Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78756.t1 | XP_024634520.1 | 62.6 | 744 | 140 | 3 | 3 | 609 | 12 | 754 | 1.80E-253 | 885.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78756.t1 | Q9SZL8 | 28.5 | 585 | 261 | 11 | 18 | 451 | 59 | 637 | 1.7e-63 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78756.t1 | A0A2Z6P1T9 | 62.1 | 731 | 141 | 1 | 14 | 608 | 5 | 735 | 1.4e-247 | 865.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78756.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78756.t1 | MTR_6g048540 | 85.470 | 117 | 17 | 0 | 423 | 539 | 106 | 222 | 5.42e-64 | 211 |
| MS.gene78756.t1 | MTR_6g048540 | 95.876 | 97 | 4 | 0 | 1 | 97 | 1 | 97 | 3.32e-59 | 198 |
| MS.gene78756.t1 | MTR_0734s0010 | 45.078 | 193 | 101 | 2 | 415 | 607 | 1 | 188 | 1.55e-47 | 165 |
| MS.gene78756.t1 | MTR_0853s0010 | 52.083 | 144 | 68 | 1 | 19 | 162 | 16 | 158 | 7.62e-45 | 157 |
| MS.gene78756.t1 | MTR_1g019850 | 51.852 | 162 | 64 | 2 | 3 | 164 | 51 | 198 | 2.62e-44 | 158 |
| MS.gene78756.t1 | MTR_3g020080 | 48.667 | 150 | 54 | 4 | 240 | 383 | 3 | 135 | 1.27e-29 | 114 |
| MS.gene78756.t1 | MTR_4g035820 | 24.661 | 369 | 242 | 10 | 21 | 365 | 68 | 424 | 1.14e-20 | 96.7 |
| MS.gene78756.t1 | MTR_8g466860 | 84.615 | 39 | 6 | 0 | 254 | 292 | 80 | 118 | 1.66e-15 | 73.6 |
| MS.gene78756.t1 | MTR_8g465780 | 30.380 | 158 | 97 | 4 | 261 | 415 | 1 | 148 | 3.60e-13 | 68.6 |
| MS.gene78756.t1 | MTR_2g024230 | 53.704 | 54 | 25 | 0 | 28 | 81 | 90 | 143 | 3.84e-12 | 65.1 |
| MS.gene78756.t1 | MTR_6g022070 | 32.609 | 138 | 92 | 1 | 218 | 354 | 30 | 167 | 6.62e-12 | 67.8 |
| MS.gene78756.t1 | MTR_2g098880 | 29.197 | 137 | 76 | 4 | 27 | 156 | 72 | 194 | 1.74e-11 | 65.5 |
| MS.gene78756.t1 | MTR_2g098880 | 29.197 | 137 | 76 | 4 | 27 | 156 | 60 | 182 | 2.01e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78756.t1 | AT4G38180 | 39.095 | 243 | 148 | 0 | 209 | 451 | 395 | 637 | 4.06e-57 | 206 |
| MS.gene78756.t1 | AT4G38180 | 34.615 | 208 | 113 | 9 | 18 | 209 | 59 | 259 | 9.92e-24 | 106 |
| MS.gene78756.t1 | AT4G38170 | 32.416 | 327 | 215 | 2 | 209 | 531 | 160 | 484 | 4.44e-52 | 187 |
| MS.gene78756.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 197 | 484 | 2.50e-48 | 180 |
| MS.gene78756.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 342 | 629 | 4.49e-48 | 181 |
| MS.gene78756.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 342 | 629 | 4.49e-48 | 181 |
| MS.gene78756.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene78756.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene78756.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene78756.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene78756.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene78756.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.12e-38 | 151 |
| MS.gene78756.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.51e-38 | 151 |
| MS.gene78756.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.51e-38 | 151 |
| MS.gene78756.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.75e-38 | 150 |
| MS.gene78756.t1 | AT3G22170 | 32.627 | 236 | 158 | 1 | 212 | 447 | 383 | 617 | 9.38e-37 | 147 |
| MS.gene78756.t1 | AT3G22170 | 26.222 | 225 | 127 | 10 | 6 | 211 | 42 | 246 | 3.66e-12 | 70.1 |
| MS.gene78756.t1 | AT3G22170 | 32.627 | 236 | 158 | 1 | 212 | 447 | 383 | 617 | 9.38e-37 | 147 |
| MS.gene78756.t1 | AT3G22170 | 26.222 | 225 | 127 | 10 | 6 | 211 | 42 | 246 | 3.66e-12 | 70.1 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.39e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.39e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 287 | 573 | 1.56e-36 | 146 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 287 | 573 | 1.68e-36 | 145 |
| MS.gene78756.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.72e-36 | 145 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 6.93e-35 | 141 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 6.93e-35 | 141 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 264 | 501 | 7.15e-35 | 140 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.28e-35 | 140 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.28e-35 | 140 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.64e-35 | 140 |
| MS.gene78756.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 335 | 572 | 9.22e-35 | 140 |
| MS.gene78756.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene78756.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene78756.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene78756.t1 | AT5G18960 | 30.420 | 286 | 185 | 3 | 220 | 501 | 503 | 778 | 3.00e-33 | 136 |
| MS.gene78756.t1 | AT5G18960 | 30.420 | 286 | 185 | 3 | 220 | 501 | 503 | 778 | 3.00e-33 | 136 |
| MS.gene78756.t1 | AT1G52520 | 31.183 | 279 | 170 | 7 | 191 | 449 | 363 | 639 | 6.12e-32 | 132 |
| MS.gene78756.t1 | AT1G80010 | 28.016 | 257 | 163 | 6 | 212 | 449 | 409 | 662 | 1.01e-26 | 115 |
| MS.gene78756.t1 | AT1G10240 | 27.458 | 295 | 173 | 7 | 235 | 511 | 399 | 670 | 1.42e-25 | 112 |
| MS.gene78756.t1 | AT1G10240 | 26.776 | 183 | 111 | 4 | 25 | 191 | 45 | 220 | 2.01e-13 | 73.9 |
| MS.gene78756.t1 | AT1G10240 | 27.458 | 295 | 173 | 7 | 235 | 511 | 399 | 670 | 1.42e-25 | 112 |
| MS.gene78756.t1 | AT1G10240 | 26.776 | 183 | 111 | 4 | 25 | 191 | 45 | 220 | 2.01e-13 | 73.9 |
| MS.gene78756.t1 | AT5G28530 | 29.187 | 209 | 142 | 2 | 239 | 447 | 355 | 557 | 7.72e-18 | 87.8 |
| MS.gene78756.t1 | AT5G28530 | 29.187 | 209 | 142 | 2 | 239 | 447 | 418 | 620 | 1.49e-17 | 87.0 |
| MS.gene78756.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 355 | 553 | 2.37e-17 | 86.3 |
| MS.gene78756.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 418 | 616 | 4.70e-17 | 85.5 |
| MS.gene78756.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 418 | 616 | 4.70e-17 | 85.5 |
| MS.gene78756.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 47 | 171 | 1.02e-11 | 65.9 |
| MS.gene78756.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 47 | 171 | 1.02e-11 | 65.9 |
| MS.gene78756.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 59 | 183 | 1.23e-11 | 65.9 |
Find 87 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCTTGTTGAACAGTTTA+AGG | 0.134754 | 5.1:-41297767 | MS.gene78756:CDS |
| ATGTCAACTGTTTGAATATT+TGG | 0.186130 | 5.1:-41296588 | MS.gene78756:CDS |
| TTTAAGTTCTCGCTTGAAAA+TGG | 0.195510 | 5.1:+41297153 | None:intergenic |
| CCCATCCTTCTTTCTTCCTT+TGG | 0.210149 | 5.1:+41296148 | None:intergenic |
| GGGATTCAGCTTTCTCTAAT+AGG | 0.233911 | 5.1:-41297699 | MS.gene78756:CDS |
| GAACTTAAAAGTTGCATTCA+TGG | 0.260689 | 5.1:-41297139 | MS.gene78756:CDS |
| TGTCAACTGTTTGAATATTT+GGG | 0.293427 | 5.1:-41296587 | MS.gene78756:CDS |
| AGATGAATGGAAGCGTTTAA+TGG | 0.328762 | 5.1:-41297092 | MS.gene78756:CDS |
| TAGCCTGATTTGTGTCATCT+TGG | 0.357525 | 5.1:+41297965 | None:intergenic |
| GATATTGTGTAGACATATAT+TGG | 0.363885 | 5.1:-41296564 | MS.gene78756:CDS |
| GGATTCAGCTTTCTCTAATA+GGG | 0.365034 | 5.1:-41297698 | MS.gene78756:CDS |
| GGGGTACAACGGAAGGTAAT+TGG | 0.367395 | 5.1:-41297888 | MS.gene78756:CDS |
| AAGAAGGATGCATGTTCAAC+AGG | 0.368503 | 5.1:-41296402 | MS.gene78756:CDS |
| TTTAATGGTTGAGTATAATC+TGG | 0.372730 | 5.1:-41297077 | MS.gene78756:CDS |
| TGGTGATGGAATTTCTCCTT+TGG | 0.376539 | 5.1:-41296261 | MS.gene78756:CDS |
| TTCTTCCTTTGGTTTGTGCT+TGG | 0.378150 | 5.1:+41296159 | None:intergenic |
| CTTTCTCTAATAGGGATTGT+TGG | 0.393553 | 5.1:-41297690 | MS.gene78756:CDS |
| AATAAATTTGATTGACATCC+TGG | 0.396334 | 5.1:+41296231 | None:intergenic |
| GTTGAACAGTTTAAGGAAGA+AGG | 0.402857 | 5.1:-41297760 | MS.gene78756:CDS |
| GAAAACAATGAATGGCTTCA+AGG | 0.415447 | 5.1:-41297055 | MS.gene78756:CDS |
| AAAACCGAAAAGAGCTATCT+TGG | 0.417824 | 5.1:-41298040 | MS.gene78756:CDS |
| GAACAGCCAGAACTCACTAT+TGG | 0.421931 | 5.1:-41296191 | MS.gene78756:CDS |
| TAAATAGTGAACCTTGTAAT+GGG | 0.426162 | 5.1:-41298149 | MS.gene78756:CDS |
| ATCTCATGAAAATATTTCAA+TGG | 0.427085 | 5.1:-41298196 | MS.gene78756:CDS |
| TTCTCCTTTGGAATCTAGCC+AGG | 0.428333 | 5.1:-41296249 | MS.gene78756:CDS |
| GGGTTTCCAATAGTGAGTTC+TGG | 0.429369 | 5.1:+41296185 | None:intergenic |
| AATTCACTTCTATTATAAAC+CGG | 0.443437 | 5.1:+41297004 | None:intergenic |
| CTTTGGTTTGTGCTTGGCGT+GGG | 0.443719 | 5.1:+41296165 | None:intergenic |
| TCTTGCAAGTTCTGCTGTTG+TGG | 0.446841 | 5.1:+41296024 | None:intergenic |
| AAGCTTCACTTACTGTTACA+AGG | 0.461078 | 5.1:-41297909 | MS.gene78756:CDS |
| AAGAGTTCATCTTCTCGAAC+CGG | 0.461559 | 5.1:-41297937 | MS.gene78756:CDS |
| AATCCAAGATGACACAAATC+AGG | 0.464191 | 5.1:-41297968 | MS.gene78756:CDS |
| TTTAATTCCTCGCCAACATT+CGG | 0.464350 | 5.1:+41298168 | None:intergenic |
| ATTTGTGTTAAAATTTGAAA+AGG | 0.469070 | 5.1:-41296894 | MS.gene78756:CDS |
| TCTCATGAAAATATTTCAAT+GGG | 0.469484 | 5.1:-41298195 | MS.gene78756:CDS |
| TACAATGTTTCGAAGATGAA+TGG | 0.470517 | 5.1:-41297105 | MS.gene78756:CDS |
| AGTAAGTGAAGCTTTACAAC+CGG | 0.474121 | 5.1:+41297918 | None:intergenic |
| TTGGTAATATTGCAAGCAAA+AGG | 0.478299 | 5.1:-41296545 | MS.gene78756:CDS |
| TTAAATAGTGAACCTTGTAA+TGG | 0.482835 | 5.1:-41298150 | MS.gene78756:CDS |
| TAATTATTGCAAACAGAGAC+AGG | 0.484710 | 5.1:-41297608 | MS.gene78756:intron |
| GGAGAAATTCCATCACCAAC+AGG | 0.484890 | 5.1:+41296266 | None:intergenic |
| TTGAATTCCATCCCATTACA+AGG | 0.486817 | 5.1:+41298138 | None:intergenic |
| TCAAATTTACCTGTTGGTGA+TGG | 0.490672 | 5.1:-41296275 | MS.gene78756:CDS |
| CGAAGTAGGAATTTAGATGT+TGG | 0.494361 | 5.1:-41297649 | MS.gene78756:CDS |
| CCTTTGGTTTGTGCTTGGCG+TGG | 0.499884 | 5.1:+41296164 | None:intergenic |
| ATAATCTGGAAAACAATGAA+TGG | 0.501263 | 5.1:-41297063 | MS.gene78756:CDS |
| AAGAAATCAAATTTACCTGT+TGG | 0.505747 | 5.1:-41296281 | MS.gene78756:CDS |
| TTGAACAGTTTAAGGAAGAA+GGG | 0.512879 | 5.1:-41297759 | MS.gene78756:CDS |
| GGCGCTTGATAGCCGCTTAG+CGG | 0.513168 | 5.1:-41296873 | MS.gene78756:CDS |
| AGCTTCACTTACTGTTACAA+GGG | 0.522791 | 5.1:-41297908 | MS.gene78756:CDS |
| CCAAAGGAAGAAAGAAGGAT+GGG | 0.526798 | 5.1:-41296148 | MS.gene78756:CDS |
| ATCTTGGTATGTTCTAATGA+AGG | 0.531078 | 5.1:-41298024 | MS.gene78756:CDS |
| AGAAAGAAGATTAAAAGAGA+AGG | 0.533498 | 5.1:-41296704 | MS.gene78756:CDS |
| TCAATGGGATCTCCGAATGT+TGG | 0.534987 | 5.1:-41298180 | MS.gene78756:CDS |
| GACACAAAGATTGCTAAATG+TGG | 0.536676 | 5.1:-41296611 | MS.gene78756:CDS |
| TAGTGAACCTTGTAATGGGA+TGG | 0.536929 | 5.1:-41298145 | MS.gene78756:CDS |
| TCTTCGAAACATTGTATACT+CGG | 0.550021 | 5.1:+41297112 | None:intergenic |
| ACAAACCAAAGGAAGAAAGA+AGG | 0.551427 | 5.1:-41296153 | MS.gene78756:CDS |
| ACCAAAGGAAGAAAGAAGGA+TGG | 0.552890 | 5.1:-41296149 | MS.gene78756:CDS |
| AAAACAATGAATGGCTTCAA+GGG | 0.554540 | 5.1:-41297054 | MS.gene78756:CDS |
| GTCAACTGTTTGAATATTTG+GGG | 0.555701 | 5.1:-41296586 | MS.gene78756:CDS |
| CGCTGCAAAATGAAATGACT+AGG | 0.557513 | 5.1:+41296509 | None:intergenic |
| TCAAAACTTGAGGTGCATGC+TGG | 0.558360 | 5.1:-41296794 | MS.gene78756:CDS |
| AAGGAAGAAGGGATACCGAC+AGG | 0.558573 | 5.1:-41297748 | MS.gene78756:CDS |
| TATCAGAGCATCATGGATAC+CGG | 0.562826 | 5.1:-41297023 | MS.gene78756:CDS |
| AGTTGATCTTGCTGAAGACT+CGG | 0.563370 | 5.1:-41296366 | MS.gene78756:CDS |
| CAATGATCATAACCATGCTA+TGG | 0.573210 | 5.1:-41297848 | MS.gene78756:CDS |
| CAATCAAATTTATTTGTCAG+AGG | 0.576100 | 5.1:-41296222 | MS.gene78756:CDS |
| TACAACATGGTCAAAACTTG+AGG | 0.581192 | 5.1:-41296804 | MS.gene78756:CDS |
| CTTCCTTAAACTGTTCAACA+AGG | 0.583874 | 5.1:+41297764 | None:intergenic |
| CCACGCCAAGCACAAACCAA+AGG | 0.586137 | 5.1:-41296164 | MS.gene78756:CDS |
| TATATAGTATCAGAGCATCA+TGG | 0.587463 | 5.1:-41297030 | MS.gene78756:CDS |
| CAAAGGAAGAAAGAAGGATG+GGG | 0.594217 | 5.1:-41296147 | MS.gene78756:CDS |
| TACTGTTACAAGGGGTACAA+CGG | 0.611755 | 5.1:-41297899 | MS.gene78756:CDS |
| GCTTCACTTACTGTTACAAG+GGG | 0.617495 | 5.1:-41297907 | MS.gene78756:CDS |
| CAAAATTGCAGATTCAAGAG+TGG | 0.619428 | 5.1:-41296113 | MS.gene78756:CDS |
| TGTCATGAGTGTGGTGCACA+TGG | 0.635601 | 5.1:-41296047 | MS.gene78756:CDS |
| AGTAATGGATGCTAATGATG+TGG | 0.639172 | 5.1:-41298223 | None:intergenic |
| GGGATCTCCGAATGTTGGCG+AGG | 0.653176 | 5.1:-41298175 | MS.gene78756:CDS |
| TGTCAAAAGTTCTAACAACA+AGG | 0.663183 | 5.1:-41297992 | MS.gene78756:CDS |
| ACATCCTGGCTAGATTCCAA+AGG | 0.665285 | 5.1:+41296245 | None:intergenic |
| GTTACAAGGGGTACAACGGA+AGG | 0.671387 | 5.1:-41297895 | MS.gene78756:CDS |
| AAACTCGGAGGTTTACAACA+TGG | 0.673994 | 5.1:-41296817 | MS.gene78756:CDS |
| ATGAAAGTAAGCATAAAACT+CGG | 0.678069 | 5.1:-41296832 | MS.gene78756:CDS |
| TGGACTAAGGATGCTAACAA+AGG | 0.678940 | 5.1:-41296485 | MS.gene78756:CDS |
| AAAGTAAGCATAAAACTCGG+AGG | 0.714539 | 5.1:-41296829 | MS.gene78756:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.715894 | 5.1:-41296056 | MS.gene78756:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGTTAAAATTTGAAA+AGG | - | chr5.1:41297329-41297348 | MS.gene78756:intron | 15.0% |
| !!! | AATTTATTTGCTAGAAAAAT+TGG | - | chr5.1:41296136-41296155 | MS.gene78756:CDS | 15.0% |
| !! | AATTCACTTCTATTATAAAC+CGG | + | chr5.1:41297222-41297241 | None:intergenic | 20.0% |
| !! | ATCTCATGAAAATATTTCAA+TGG | - | chr5.1:41296027-41296046 | MS.gene78756:CDS | 20.0% |
| !! | TCTCATGAAAATATTTCAAT+GGG | - | chr5.1:41296028-41296047 | MS.gene78756:CDS | 20.0% |
| !!! | CATTACCAATCAATTTTATT+TGG | - | chr5.1:41296823-41296842 | MS.gene78756:CDS | 20.0% |
| !!! | TCGAATGATAAATTTTTTCT+GGG | - | chr5.1:41296684-41296703 | MS.gene78756:CDS | 20.0% |
| !!! | TTGCTACAATTTTCAATAAT+GGG | - | chr5.1:41296503-41296522 | MS.gene78756:CDS | 20.0% |
| ! | AAGAAATCAAATTTACCTGT+TGG | - | chr5.1:41297942-41297961 | MS.gene78756:CDS | 25.0% |
| ! | AATAAATTTGATTGACATCC+TGG | + | chr5.1:41297995-41298014 | None:intergenic | 25.0% |
| ! | AGAAAGAAGATTAAAAGAGA+AGG | - | chr5.1:41297519-41297538 | MS.gene78756:intron | 25.0% |
| ! | ATAATCTGGAAAACAATGAA+TGG | - | chr5.1:41297160-41297179 | MS.gene78756:CDS | 25.0% |
| ! | ATATGAAAAAACTTCGAAGT+AGG | - | chr5.1:41296560-41296579 | MS.gene78756:CDS | 25.0% |
| ! | ATGAAAGTAAGCATAAAACT+CGG | - | chr5.1:41297391-41297410 | MS.gene78756:intron | 25.0% |
| ! | ATGAGATGTCATAAAAAGAT+GGG | - | chr5.1:41296421-41296440 | MS.gene78756:CDS | 25.0% |
| ! | ATGTCAACTGTTTGAATATT+TGG | - | chr5.1:41297635-41297654 | MS.gene78756:CDS | 25.0% |
| ! | CAATCAAATTTATTTGTCAG+AGG | - | chr5.1:41298001-41298020 | MS.gene78756:CDS | 25.0% |
| ! | CACAACCAAATAAAATTGAT+TGG | + | chr5.1:41296831-41296850 | None:intergenic | 25.0% |
| ! | GATATTGTGTAGACATATAT+TGG | - | chr5.1:41297659-41297678 | MS.gene78756:CDS | 25.0% |
| ! | TAAATAGTGAACCTTGTAAT+GGG | - | chr5.1:41296074-41296093 | MS.gene78756:CDS | 25.0% |
| ! | TATGAGATGTCATAAAAAGA+TGG | - | chr5.1:41296420-41296439 | MS.gene78756:CDS | 25.0% |
| ! | TGTCAACTGTTTGAATATTT+GGG | - | chr5.1:41297636-41297655 | MS.gene78756:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+TGG | - | chr5.1:41296073-41296092 | MS.gene78756:CDS | 25.0% |
| ! | TTTAATGGTTGAGTATAATC+TGG | - | chr5.1:41297146-41297165 | MS.gene78756:CDS | 25.0% |
| !! | GTTGCTACAATTTTCAATAA+TGG | - | chr5.1:41296502-41296521 | MS.gene78756:CDS | 25.0% |
| !! | TCATATAAGACACACTTTTA+GGG | + | chr5.1:41296405-41296424 | None:intergenic | 25.0% |
| !! | TGCTACAATTTTCAATAATG+GGG | - | chr5.1:41296504-41296523 | MS.gene78756:CDS | 25.0% |
| !!! | AATAGAAGTGAATTTTTTGC+TGG | - | chr5.1:41297228-41297247 | MS.gene78756:intron | 25.0% |
| !!! | AGTAATTTTGATGATCAAAC+TGG | - | chr5.1:41297783-41297802 | MS.gene78756:CDS | 25.0% |
| !!! | ATAGAAGTGAATTTTTTGCT+GGG | - | chr5.1:41297229-41297248 | MS.gene78756:intron | 25.0% |
| !!! | CTCGAATGATAAATTTTTTC+TGG | - | chr5.1:41296683-41296702 | MS.gene78756:CDS | 25.0% |
| !!! | GCACTTCAAAAATTTTAAGA+AGG | - | chr5.1:41297805-41297824 | MS.gene78756:CDS | 25.0% |
| !!! | TTTGCTAGAAAAATTGGTTT+TGG | - | chr5.1:41296142-41296161 | MS.gene78756:CDS | 25.0% |
| AAAACAATGAATGGCTTCAA+GGG | - | chr5.1:41297169-41297188 | MS.gene78756:CDS | 30.0% | |
| AAATGACATCTCCAAATTGT+TGG | + | chr5.1:41296735-41296754 | None:intergenic | 30.0% | |
| AGATTAGCATACCAACAATT+TGG | - | chr5.1:41296721-41296740 | MS.gene78756:CDS | 30.0% | |
| ATCTTGGTATGTTCTAATGA+AGG | - | chr5.1:41296199-41296218 | MS.gene78756:CDS | 30.0% | |
| GAACTTAAAAGTTGCATTCA+TGG | - | chr5.1:41297084-41297103 | MS.gene78756:CDS | 30.0% | |
| GATCAAGATTTAGCTATGAA+AGG | - | chr5.1:41296946-41296965 | MS.gene78756:CDS | 30.0% | |
| GTCAACTGTTTGAATATTTG+GGG | - | chr5.1:41297637-41297656 | MS.gene78756:CDS | 30.0% | |
| TAATTATTGCAAACAGAGAC+AGG | - | chr5.1:41296615-41296634 | MS.gene78756:CDS | 30.0% | |
| TACAATGTTTCGAAGATGAA+TGG | - | chr5.1:41297118-41297137 | MS.gene78756:CDS | 30.0% | |
| TCTTCGAAACATTGTATACT+CGG | + | chr5.1:41297114-41297133 | None:intergenic | 30.0% | |
| TGATCAGTTATGACAGATTT+GGG | + | chr5.1:41296931-41296950 | None:intergenic | 30.0% | |
| TGATTATTCAATCCAACGAA+CGG | + | chr5.1:41296805-41296824 | None:intergenic | 30.0% | |
| TTGAACAGTTTAAGGAAGAA+GGG | - | chr5.1:41296464-41296483 | MS.gene78756:CDS | 30.0% | |
| TTGATCAGTTATGACAGATT+TGG | + | chr5.1:41296932-41296951 | None:intergenic | 30.0% | |
| ! | CTCATATAAGACACACTTTT+AGG | + | chr5.1:41296406-41296425 | None:intergenic | 30.0% |
| ! | TAGAACTTTTGACAAGATGT+TGG | + | chr5.1:41296225-41296244 | None:intergenic | 30.0% |
| ! | TATATAGTATCAGAGCATCA+TGG | - | chr5.1:41297193-41297212 | MS.gene78756:intron | 30.0% |
| ! | TGCTTTATTACAAGATGAGT+CGG | - | chr5.1:41296849-41296868 | MS.gene78756:CDS | 30.0% |
| ! | TGTCAAAAGTTCTAACAACA+AGG | - | chr5.1:41296231-41296250 | MS.gene78756:CDS | 30.0% |
| ! | TTGGTAATATTGCAAGCAAA+AGG | - | chr5.1:41297678-41297697 | MS.gene78756:CDS | 30.0% |
| ! | TTTAAGTTCTCGCTTGAAAA+TGG | + | chr5.1:41297073-41297092 | None:intergenic | 30.0% |
| !! | GTTGTTTGAAACTTTTCTTG+AGG | - | chr5.1:41296888-41296907 | MS.gene78756:CDS | 30.0% |
| !!! | GTACTTGTTGGTTTTATATG+TGG | + | chr5.1:41296767-41296786 | None:intergenic | 30.0% |
| !!! | TAAATATGAGCTAGCTTTTC+AGG | + | chr5.1:41297039-41297058 | None:intergenic | 30.0% |
| AAAACCGAAAAGAGCTATCT+TGG | - | chr5.1:41296183-41296202 | MS.gene78756:CDS | 35.0% | |
| AAAGTAAGCATAAAACTCGG+AGG | - | chr5.1:41297394-41297413 | MS.gene78756:intron | 35.0% | |
| AAGCTTCACTTACTGTTACA+AGG | - | chr5.1:41296314-41296333 | MS.gene78756:CDS | 35.0% | |
| AATCCAAGATGACACAAATC+AGG | - | chr5.1:41296255-41296274 | MS.gene78756:CDS | 35.0% | |
| ACAAACCAAAGGAAGAAAGA+AGG | - | chr5.1:41298070-41298089 | MS.gene78756:CDS | 35.0% | |
| AGATGTCATAAAAAGATGGG+TGG | - | chr5.1:41296424-41296443 | MS.gene78756:CDS | 35.0% | |
| AGCTTCACTTACTGTTACAA+GGG | - | chr5.1:41296315-41296334 | MS.gene78756:CDS | 35.0% | |
| AGTAAGTGAAGCTTTACAAC+CGG | + | chr5.1:41296308-41296327 | None:intergenic | 35.0% | |
| ATTATTCAATCCAACGAACG+GGG | + | chr5.1:41296803-41296822 | None:intergenic | 35.0% | |
| CAAAATTGCAGATTCAAGAG+TGG | - | chr5.1:41298110-41298129 | MS.gene78756:CDS | 35.0% | |
| CAATGATCATAACCATGCTA+TGG | - | chr5.1:41296375-41296394 | MS.gene78756:CDS | 35.0% | |
| CGAAGTAGGAATTTAGATGT+TGG | - | chr5.1:41296574-41296593 | MS.gene78756:CDS | 35.0% | |
| CTTCCTTAAACTGTTCAACA+AGG | + | chr5.1:41296462-41296481 | None:intergenic | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | - | chr5.1:41296533-41296552 | MS.gene78756:CDS | 35.0% | |
| GAAAACAATGAATGGCTTCA+AGG | - | chr5.1:41297168-41297187 | MS.gene78756:CDS | 35.0% | |
| GACACAAAGATTGCTAAATG+TGG | - | chr5.1:41297612-41297631 | MS.gene78756:CDS | 35.0% | |
| GATTATTCAATCCAACGAAC+GGG | + | chr5.1:41296804-41296823 | None:intergenic | 35.0% | |
| GGATTCAGCTTTCTCTAATA+GGG | - | chr5.1:41296525-41296544 | MS.gene78756:CDS | 35.0% | |
| GTTGAACAGTTTAAGGAAGA+AGG | - | chr5.1:41296463-41296482 | MS.gene78756:CDS | 35.0% | |
| TACAACATGGTCAAAACTTG+AGG | - | chr5.1:41297419-41297438 | MS.gene78756:intron | 35.0% | |
| TTGAATTCCATCCCATTACA+AGG | + | chr5.1:41296088-41296107 | None:intergenic | 35.0% | |
| TTTAATTCCTCGCCAACATT+CGG | + | chr5.1:41296058-41296077 | None:intergenic | 35.0% | |
| ! | ACTTTTCTTGAGGCAATGAA+TGG | - | chr5.1:41296898-41296917 | MS.gene78756:CDS | 35.0% |
| ! | AGTCGGAACGTTCTTTTATA+TGG | - | chr5.1:41296866-41296885 | MS.gene78756:CDS | 35.0% |
| ! | ATTGTAGCAACTTTTCCTGT+CGG | + | chr5.1:41296493-41296512 | None:intergenic | 35.0% |
| ! | CATACCAAGATAGCTCTTTT+CGG | + | chr5.1:41296190-41296209 | None:intergenic | 35.0% |
| ! | TCAAATTTACCTGTTGGTGA+TGG | - | chr5.1:41297948-41297967 | MS.gene78756:CDS | 35.0% |
| !! | AAGCCTTGTTGAACAGTTTA+AGG | - | chr5.1:41296456-41296475 | MS.gene78756:CDS | 35.0% |
| !! | AGATGAATGGAAGCGTTTAA+TGG | - | chr5.1:41297131-41297150 | MS.gene78756:CDS | 35.0% |
| AAACTCGGAGGTTTACAACA+TGG | - | chr5.1:41297406-41297425 | MS.gene78756:intron | 40.0% | |
| AAGAAGGATGCATGTTCAAC+AGG | - | chr5.1:41297821-41297840 | MS.gene78756:CDS | 40.0% | |
| AAGAGTTCATCTTCTCGAAC+CGG | - | chr5.1:41296286-41296305 | MS.gene78756:CDS | 40.0% | |
| ACCAAAGGAAGAAAGAAGGA+TGG | - | chr5.1:41298074-41298093 | MS.gene78756:CDS | 40.0% | |
| AGTTGATCTTGCTGAAGACT+CGG | - | chr5.1:41297857-41297876 | MS.gene78756:CDS | 40.0% | |
| CAAAGGAAGAAAGAAGGATG+GGG | - | chr5.1:41298076-41298095 | MS.gene78756:CDS | 40.0% | |
| CCAAAGGAAGAAAGAAGGAT+GGG | - | chr5.1:41298075-41298094 | MS.gene78756:CDS | 40.0% | |
| CGCTGCAAAATGAAATGACT+AGG | + | chr5.1:41297717-41297736 | None:intergenic | 40.0% | |
| CTTAGCGGTAGAAAAAAGAG+AGG | - | chr5.1:41297365-41297384 | MS.gene78756:intron | 40.0% | |
| GCTTCACTTACTGTTACAAG+GGG | - | chr5.1:41296316-41296335 | MS.gene78756:CDS | 40.0% | |
| GGGATTCAGCTTTCTCTAAT+AGG | - | chr5.1:41296524-41296543 | MS.gene78756:CDS | 40.0% | |
| TGGACTAAGGATGCTAACAA+AGG | - | chr5.1:41297738-41297757 | MS.gene78756:CDS | 40.0% | |
| TTCGAGAATCTTCATCGCAT+TGG | + | chr5.1:41296669-41296688 | None:intergenic | 40.0% | |
| ! | AAAGGGCATACTGTACTTGT+TGG | + | chr5.1:41296779-41296798 | None:intergenic | 40.0% |
| ! | AGAAAAGCATGTCATGAGTG+TGG | - | chr5.1:41298167-41298186 | MS.gene78756:CDS | 40.0% |
| ! | GTCATTTCATTTTGCAGCGT+TGG | - | chr5.1:41297718-41297737 | MS.gene78756:CDS | 40.0% |
| ! | TACTGTTACAAGGGGTACAA+CGG | - | chr5.1:41296324-41296343 | MS.gene78756:CDS | 40.0% |
| ! | TAGCCTGATTTGTGTCATCT+TGG | + | chr5.1:41296261-41296280 | None:intergenic | 40.0% |
| ! | TAGTGAACCTTGTAATGGGA+TGG | - | chr5.1:41296078-41296097 | MS.gene78756:CDS | 40.0% |
| ! | TATCAGAGCATCATGGATAC+CGG | - | chr5.1:41297200-41297219 | MS.gene78756:intron | 40.0% |
| !! | TGGTGATGGAATTTCTCCTT+TGG | - | chr5.1:41297962-41297981 | MS.gene78756:CDS | 40.0% |
| !! | TTCTTCCTTTGGTTTGTGCT+TGG | + | chr5.1:41298067-41298086 | None:intergenic | 40.0% |
| !!! | CTCTTTTTTCTACCGCTAAG+CGG | + | chr5.1:41297365-41297384 | None:intergenic | 40.0% |
| !!! | TTTTAGGGCTAACCATAGCA+TGG | + | chr5.1:41296390-41296409 | None:intergenic | 40.0% |
| ACATCCTGGCTAGATTCCAA+AGG | + | chr5.1:41297981-41298000 | None:intergenic | 45.0% | |
| CCCATCCTTCTTTCTTCCTT+TGG | + | chr5.1:41298078-41298097 | None:intergenic | 45.0% | |
| GAACAGCCAGAACTCACTAT+TGG | - | chr5.1:41298032-41298051 | MS.gene78756:CDS | 45.0% | |
| GGAGAAATTCCATCACCAAC+AGG | + | chr5.1:41297960-41297979 | None:intergenic | 45.0% | |
| GGGTTTCCAATAGTGAGTTC+TGG | + | chr5.1:41298041-41298060 | None:intergenic | 45.0% | |
| TCAAAACTTGAGGTGCATGC+TGG | - | chr5.1:41297429-41297448 | MS.gene78756:intron | 45.0% | |
| TCAATGGGATCTCCGAATGT+TGG | - | chr5.1:41296043-41296062 | MS.gene78756:CDS | 45.0% | |
| TCTTGCAAGTTCTGCTGTTG+TGG | + | chr5.1:41298202-41298221 | None:intergenic | 45.0% | |
| !! | CATTTTGCAGCGTTGGACTA+AGG | - | chr5.1:41297725-41297744 | MS.gene78756:CDS | 45.0% |
| !! | TTCTCCTTTGGAATCTAGCC+AGG | - | chr5.1:41297974-41297993 | MS.gene78756:CDS | 45.0% |
| AAGGAAGAAGGGATACCGAC+AGG | - | chr5.1:41296475-41296494 | MS.gene78756:CDS | 50.0% | |
| AATCCAACGAACGGGGCAAA+GGG | + | chr5.1:41296796-41296815 | None:intergenic | 50.0% | |
| GCCTCTGCTTGTGGCATATT+CGG | - | chr5.1:41297004-41297023 | MS.gene78756:CDS | 50.0% | |
| GGGGTACAACGGAAGGTAAT+TGG | - | chr5.1:41296335-41296354 | MS.gene78756:CDS | 50.0% | |
| TCCGAATATGCCACAAGCAG+AGG | + | chr5.1:41297008-41297027 | None:intergenic | 50.0% | |
| TGTCATGAGTGTGGTGCACA+TGG | - | chr5.1:41298176-41298195 | MS.gene78756:CDS | 50.0% | |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | + | chr5.1:41296991-41297010 | None:intergenic | 50.0% |
| ! | GTTACAAGGGGTACAACGGA+AGG | - | chr5.1:41296328-41296347 | MS.gene78756:CDS | 50.0% |
| !! | CTTTGGTTTGTGCTTGGCGT+GGG | + | chr5.1:41298061-41298080 | None:intergenic | 50.0% |
| CAATCCAACGAACGGGGCAA+AGG | + | chr5.1:41296797-41296816 | None:intergenic | 55.0% | |
| CCACGCCAAGCACAAACCAA+AGG | - | chr5.1:41298059-41298078 | MS.gene78756:CDS | 55.0% | |
| CTAGACATCGCCTCTGCTTG+TGG | - | chr5.1:41296995-41297014 | MS.gene78756:CDS | 55.0% | |
| !! | CCTTTGGTTTGTGCTTGGCG+TGG | + | chr5.1:41298062-41298081 | None:intergenic | 55.0% |
| ATGCCCTTTGCCCCGTTCGT+TGG | - | chr5.1:41296790-41296809 | MS.gene78756:CDS | 60.0% | |
| GGGATCTCCGAATGTTGGCG+AGG | - | chr5.1:41296048-41296067 | MS.gene78756:CDS | 60.0% | |
| ! | GGCGCTTGATAGCCGCTTAG+CGG | - | chr5.1:41297350-41297369 | MS.gene78756:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 41296004 | 41298241 | 41296004 | ID=MS.gene78756 |
| chr5.1 | mRNA | 41296004 | 41298241 | 41296004 | ID=MS.gene78756.t1;Parent=MS.gene78756 |
| chr5.1 | exon | 41297609 | 41298241 | 41297609 | ID=MS.gene78756.t1.exon1;Parent=MS.gene78756.t1 |
| chr5.1 | CDS | 41297609 | 41298241 | 41297609 | ID=cds.MS.gene78756.t1;Parent=MS.gene78756.t1 |
| chr5.1 | exon | 41296004 | 41297200 | 41296004 | ID=MS.gene78756.t1.exon2;Parent=MS.gene78756.t1 |
| chr5.1 | CDS | 41296004 | 41297200 | 41296004 | ID=cds.MS.gene78756.t1;Parent=MS.gene78756.t1 |
| Gene Sequence |
| Protein sequence |
