Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78786.t1 | AES71377.2 | 69 | 232 | 44 | 2 | 39 | 242 | 879 | 1110 | 1.10E-78 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78786.t1 | P31542 | 90.0 | 30 | 3 | 0 | 22 | 51 | 159 | 188 | 6.4e-06 | 52.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78786.t1 | G7J3P4 | 69.0 | 232 | 44 | 2 | 39 | 242 | 892 | 1123 | 8.1e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78786.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78786.t1 | MTR_3g073320 | 69.828 | 232 | 42 | 3 | 39 | 242 | 879 | 1110 | 1.98e-97 | 310 |
| MS.gene78786.t1 | MTR_3g073320 | 69.828 | 232 | 42 | 3 | 39 | 242 | 892 | 1123 | 2.17e-97 | 309 |
| MS.gene78786.t1 | MTR_8g005245 | 68.000 | 100 | 19 | 2 | 111 | 199 | 158 | 255 | 3.07e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 879 | 1087 | 7.18e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 852 | 1060 | 7.19e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 879 | 1087 | 7.25e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 879 | 1087 | 7.56e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 829 | 1037 | 8.10e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 829 | 1037 | 8.50e-38 | 140 |
| MS.gene78786.t1 | AT1G77800 | 39.906 | 213 | 102 | 5 | 52 | 242 | 810 | 1018 | 8.67e-38 | 140 |
Find 51 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCATCTGCCATAAATAAT+TGG | 0.197244 | 5.1:+40104830 | MS.gene78786:CDS |
| TGGCTTCTCCCAATTATTTA+TGG | 0.197593 | 5.1:-40104839 | None:intergenic |
| GGCAGATGGCCCAGAACTTC+TGG | 0.261026 | 5.1:-40104818 | None:intergenic |
| GATCTATTGTCCAGAAGTTC+TGG | 0.291520 | 5.1:+40104808 | MS.gene78786:CDS |
| TCCGCGTGCCGAGAGAGTTT+TGG | 0.296686 | 5.1:+40103849 | MS.gene78786:CDS |
| CATCGCCGCGAGAGCACTTC+TGG | 0.315808 | 5.1:-40103024 | None:intergenic |
| GCACATTCTACAACAAAATA+TGG | 0.320317 | 5.1:-40104859 | None:intergenic |
| GCCAAGATCAGATATTTCTA+AGG | 0.321311 | 5.1:+40104557 | MS.gene78786:intron |
| AACTCTAGAAAGAGTCTCTT+TGG | 0.352202 | 5.1:-40104490 | None:intergenic |
| GTCTCTTTGGCACGGGGCAT+TGG | 0.373676 | 5.1:-40104477 | None:intergenic |
| GCTCTTTGTGGTGGTACTAC+TGG | 0.402180 | 5.1:+40104880 | MS.gene78786:CDS |
| TTGAAGTTGGATGCCTTAAG+TGG | 0.416921 | 5.1:+40104432 | MS.gene78786:CDS |
| CCTTGCAACCAGAGCATAGT+AGG | 0.420383 | 5.1:-40104635 | None:intergenic |
| CTGTTAATTGGAAGGGGCAG+TGG | 0.432063 | 5.1:+40103799 | MS.gene78786:intron |
| CGGGGCATTGGCTGAGAACA+TGG | 0.461925 | 5.1:-40104465 | None:intergenic |
| AATCTCCTGGGGCAAACTCT+TGG | 0.470177 | 5.1:-40104250 | None:intergenic |
| GCCATCTGCCATAAATAATT+GGG | 0.472144 | 5.1:+40104831 | MS.gene78786:CDS |
| TGGACCAGTCCGCCCACTTA+AGG | 0.473529 | 5.1:-40104445 | None:intergenic |
| TCCCAATTATTTATGGCAGA+TGG | 0.474546 | 5.1:-40104832 | None:intergenic |
| GAAATTGCAAAAGAAGTAAG+TGG | 0.476640 | 5.1:-40104356 | None:intergenic |
| ATAAAACACATCAACAAAGA+TGG | 0.489693 | 5.1:+40104274 | MS.gene78786:CDS |
| CAGAAGTGCTCTCGCGGCGA+TGG | 0.493289 | 5.1:+40103025 | MS.gene78786:CDS |
| CCTACTATGCTCTGGTTGCA+AGG | 0.501390 | 5.1:+40104635 | MS.gene78786:CDS |
| GTTGTAGAATGTGCTCTTTG+TGG | 0.503308 | 5.1:+40104868 | MS.gene78786:CDS |
| ATCTATTGTCCAGAAGTTCT+GGG | 0.505690 | 5.1:+40104809 | MS.gene78786:CDS |
| CAACCAGAGCATAGTAGGAT+AGG | 0.511552 | 5.1:-40104630 | None:intergenic |
| TGTTGCCAAGAGTTTGCCCC+AGG | 0.516719 | 5.1:+40104245 | MS.gene78786:CDS |
| CTTGATCTTAGAGAGGCAAC+AGG | 0.517782 | 5.1:+40104324 | MS.gene78786:CDS |
| AGAAAGAGTCTCTTTGGCAC+GGG | 0.519668 | 5.1:-40104484 | None:intergenic |
| TTGGAGGAAGCTCGTCAACT+TGG | 0.522024 | 5.1:+40103880 | MS.gene78786:CDS |
| AATCCTATCCTACTATGCTC+TGG | 0.524276 | 5.1:+40104627 | MS.gene78786:CDS |
| CGTAGTGTGAAAGAAACAAC+CGG | 0.529590 | 5.1:+40104760 | MS.gene78786:CDS |
| GATGCCTTAAGTGGGCGGAC+TGG | 0.545894 | 5.1:+40104441 | MS.gene78786:CDS |
| TAAAACACATCAACAAAGAT+GGG | 0.548679 | 5.1:+40104275 | MS.gene78786:CDS |
| TGAGAGTTCCAAAACTCTCT+CGG | 0.572947 | 5.1:-40103857 | None:intergenic |
| GCCGCGAGAGCACTTCTGGC+CGG | 0.573681 | 5.1:-40103020 | None:intergenic |
| TGAAAGAAACAACCGGTCCA+TGG | 0.575404 | 5.1:+40104767 | MS.gene78786:CDS |
| TAGAAAGAGTCTCTTTGGCA+CGG | 0.583734 | 5.1:-40104485 | None:intergenic |
| GCGCTATCTCTTCATGCAGC+CGG | 0.588002 | 5.1:+40103001 | None:intergenic |
| GTAGAATGTGCTCTTTGTGG+TGG | 0.598700 | 5.1:+40104871 | MS.gene78786:CDS |
| TCCAAAACTCTCTCGGCACG+CGG | 0.613662 | 5.1:-40103850 | None:intergenic |
| GCCGGCCAGAAGTGCTCTCG+CGG | 0.619458 | 5.1:+40103019 | MS.gene78786:CDS |
| TGAAGTTGGATGCCTTAAGT+GGG | 0.620620 | 5.1:+40104433 | MS.gene78786:CDS |
| TAATTCACAGTACCATGGAC+CGG | 0.621024 | 5.1:-40104779 | None:intergenic |
| AGTTGGATGCCTTAAGTGGG+CGG | 0.629952 | 5.1:+40104436 | MS.gene78786:CDS |
| ACATCAACAAAGATGGGATG+CGG | 0.631395 | 5.1:+40104281 | MS.gene78786:CDS |
| ATATCTGCTTGATCTTAGAG+AGG | 0.651787 | 5.1:+40104317 | MS.gene78786:CDS |
| GAAAGAGTCTCTTTGGCACG+GGG | 0.656351 | 5.1:-40104483 | None:intergenic |
| TCACATAATTCACAGTACCA+TGG | 0.665195 | 5.1:-40104784 | None:intergenic |
| GATCTTAGAGAGGCAACAGG+AGG | 0.685846 | 5.1:+40104327 | MS.gene78786:CDS |
| CAAAATACTGAAAAGCAGAG+TGG | 0.687038 | 5.1:-40103064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTCTTTCAAATTTA+TGG | + | chr5.1:40103591-40103610 | MS.gene78786:intron | 10.0% |
| !!! | ATCATATTTTTACTGTTATA+CGG | - | chr5.1:40104399-40104418 | None:intergenic | 15.0% |
| !!! | TATTGTTGTGATTTTTTAAT+AGG | + | chr5.1:40103093-40103112 | MS.gene78786:intron | 15.0% |
| !! | AATCAAATATCAAACCAAAA+TGG | - | chr5.1:40103355-40103374 | None:intergenic | 20.0% |
| !! | CAATACAAAATTAACCAAAA+AGG | - | chr5.1:40103194-40103213 | None:intergenic | 20.0% |
| !! | TATATATTCCAAACATAACT+TGG | + | chr5.1:40103993-40104012 | MS.gene78786:intron | 20.0% |
| !! | TGAATTATAATTTATGCTCT+TGG | + | chr5.1:40103627-40103646 | MS.gene78786:intron | 20.0% |
| !!! | CAAATTTATGGATTGTATTT+TGG | + | chr5.1:40103603-40103622 | MS.gene78786:intron | 20.0% |
| !!! | TAATTTTGTATCGATGAAAT+TGG | + | chr5.1:40103312-40103331 | MS.gene78786:intron | 20.0% |
| !!! | TGTAAGTTTAAAATTGAACA+TGG | - | chr5.1:40104174-40104193 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATTCATTGAAGT+TGG | + | chr5.1:40104419-40104438 | MS.gene78786:CDS | 20.0% |
| !!! | TTTTCTAATTTCAGAAAACT+TGG | + | chr5.1:40104215-40104234 | MS.gene78786:intron | 20.0% |
| ! | AACCATGAAAAACTAATAAG+GGG | - | chr5.1:40104712-40104731 | None:intergenic | 25.0% |
| ! | ACAACCATGAAAAACTAATA+AGG | - | chr5.1:40104714-40104733 | None:intergenic | 25.0% |
| ! | AGAGAAATAAATGCATGAAA+TGG | - | chr5.1:40104681-40104700 | None:intergenic | 25.0% |
| ! | ATAAAACACATCAACAAAGA+TGG | + | chr5.1:40104274-40104293 | MS.gene78786:CDS | 25.0% |
| ! | ATTAACAGCATAAAATGACT+TGG | - | chr5.1:40103787-40103806 | None:intergenic | 25.0% |
| ! | CAACCATGAAAAACTAATAA+GGG | - | chr5.1:40104713-40104732 | None:intergenic | 25.0% |
| ! | TAAAACACATCAACAAAGAT+GGG | + | chr5.1:40104275-40104294 | MS.gene78786:CDS | 25.0% |
| ! | TAATCACTATGAAACTACAA+AGG | - | chr5.1:40103407-40103426 | None:intergenic | 25.0% |
| !! | ATTTTATGCTGTTAATTGGA+AGG | + | chr5.1:40103791-40103810 | MS.gene78786:intron | 25.0% |
| !! | TCTTCTAATTAATCTGAAGT+TGG | + | chr5.1:40104128-40104147 | MS.gene78786:intron | 25.0% |
| !! | TTTAGAGAGAAAATCCATTT+TGG | + | chr5.1:40103338-40103357 | MS.gene78786:intron | 25.0% |
| !! | TTTTATGCTGTTAATTGGAA+GGG | + | chr5.1:40103792-40103811 | MS.gene78786:intron | 25.0% |
| !!! | AGCTTTTTTGTTGTGATTTT+CGG | + | chr5.1:40103736-40103755 | MS.gene78786:intron | 25.0% |
| !!! | AGTCATTTTATGCTGTTAAT+TGG | + | chr5.1:40103787-40103806 | MS.gene78786:intron | 25.0% |
| !!! | GTTGTGATTTTTTAATAGGT+GGG | + | chr5.1:40103097-40103116 | MS.gene78786:intron | 25.0% |
| !!! | TATTAGTTTTTCATGGTTGT+AGG | + | chr5.1:40104714-40104733 | MS.gene78786:intron | 25.0% |
| !!! | TGTTGTGATTTTTTAATAGG+TGG | + | chr5.1:40103096-40103115 | MS.gene78786:intron | 25.0% |
| !!! | TTCAGTATTTTGCTTTTGAA+TGG | + | chr5.1:40103556-40103575 | MS.gene78786:intron | 25.0% |
| AAGTTGGCATTATCAATTGT+TGG | + | chr5.1:40104144-40104163 | MS.gene78786:intron | 30.0% | |
| AGCATGCAAAACAATCAAAA+TGG | - | chr5.1:40103503-40103522 | None:intergenic | 30.0% | |
| AGCTTCGTCATAGAAATATT+CGG | + | chr5.1:40104524-40104543 | MS.gene78786:intron | 30.0% | |
| AGTTGGCATTATCAATTGTT+GGG | + | chr5.1:40104145-40104164 | MS.gene78786:intron | 30.0% | |
| GAAATTGCAAAAGAAGTAAG+TGG | - | chr5.1:40104359-40104378 | None:intergenic | 30.0% | |
| GCACATTCTACAACAAAATA+TGG | - | chr5.1:40104862-40104881 | None:intergenic | 30.0% | |
| GCATGCAAAACAATCAAAAT+GGG | - | chr5.1:40103502-40103521 | None:intergenic | 30.0% | |
| TCCTTAGAAATATCTGATCT+TGG | - | chr5.1:40104561-40104580 | None:intergenic | 30.0% | |
| TTTATGCTGTTAATTGGAAG+GGG | + | chr5.1:40103793-40103812 | MS.gene78786:intron | 30.0% | |
| ! | ATGTGTTTTATCAATCTCCT+GGG | - | chr5.1:40104265-40104284 | None:intergenic | 30.0% |
| ! | CCATCAAACTATCTAAAACA+AGG | - | chr5.1:40103663-40103682 | None:intergenic | 30.0% |
| !!! | ACTGGTTTGTATCTCTTTTA+TGG | + | chr5.1:40103447-40103466 | MS.gene78786:intron | 30.0% |
| !!! | ATTTTGATTGTTTTGCATGC+TGG | + | chr5.1:40103502-40103521 | MS.gene78786:intron | 30.0% |
| !!! | CCTTGTTTTAGATAGTTTGA+TGG | + | chr5.1:40103660-40103679 | MS.gene78786:intron | 30.0% |
| !!! | TTCCCCTTATTAGTTTTTCA+TGG | + | chr5.1:40104707-40104726 | MS.gene78786:intron | 30.0% |
| ACAAAGGTTCGATTACGAAA+TGG | - | chr5.1:40103391-40103410 | None:intergenic | 35.0% | |
| ATAAATGCATGAAATGGACC+AGG | - | chr5.1:40104675-40104694 | None:intergenic | 35.0% | |
| ATATCTGCTTGATCTTAGAG+AGG | + | chr5.1:40104317-40104336 | MS.gene78786:CDS | 35.0% | |
| ATCACACTCCAAGTTATGTT+TGG | - | chr5.1:40104004-40104023 | None:intergenic | 35.0% | |
| ATCTATTGTCCAGAAGTTCT+GGG | + | chr5.1:40104809-40104828 | MS.gene78786:CDS | 35.0% | |
| CAAAATACTGAAAAGCAGAG+TGG | - | chr5.1:40103067-40103086 | None:intergenic | 35.0% | |
| GCCATCTGCCATAAATAATT+GGG | + | chr5.1:40104831-40104850 | MS.gene78786:CDS | 35.0% | |
| TAAATGCATGAAATGGACCA+GGG | - | chr5.1:40104674-40104693 | None:intergenic | 35.0% | |
| TCACATAATTCACAGTACCA+TGG | - | chr5.1:40104787-40104806 | None:intergenic | 35.0% | |
| TCCCAATTATTTATGGCAGA+TGG | - | chr5.1:40104835-40104854 | None:intergenic | 35.0% | |
| TGGCTTCTCCCAATTATTTA+TGG | - | chr5.1:40104842-40104861 | None:intergenic | 35.0% | |
| ! | AACTCTAGAAAGAGTCTCTT+TGG | - | chr5.1:40104493-40104512 | None:intergenic | 35.0% |
| ! | GATGTGTTTTATCAATCTCC+TGG | - | chr5.1:40104266-40104285 | None:intergenic | 35.0% |
| ! | GCCAAGATCAGATATTTCTA+AGG | + | chr5.1:40104557-40104576 | MS.gene78786:intron | 35.0% |
| ! | GCTTTTGAATGGTTCATGTT+TGG | + | chr5.1:40103567-40103586 | MS.gene78786:intron | 35.0% |
| ! | GGTGAAAGACAAAACCTTTT+TGG | + | chr5.1:40103177-40103196 | MS.gene78786:intron | 35.0% |
| ! | TGTGTTTTATCAATCTCCTG+GGG | - | chr5.1:40104264-40104283 | None:intergenic | 35.0% |
| ! | TTGTTGTGATTTTCGGAACA+TGG | + | chr5.1:40103743-40103762 | MS.gene78786:intron | 35.0% |
| ! | TTTTTCATGGTTGTAGGTTG+CGG | + | chr5.1:40104720-40104739 | MS.gene78786:intron | 35.0% |
| AACATCTTTACCTTCTGAGC+AGG | + | chr5.1:40103156-40103175 | MS.gene78786:intron | 40.0% | |
| AAGGTTCGATTACGAAATGG+AGG | - | chr5.1:40103388-40103407 | None:intergenic | 40.0% | |
| AATCCTATCCTACTATGCTC+TGG | + | chr5.1:40104627-40104646 | MS.gene78786:CDS | 40.0% | |
| ACATCAACAAAGATGGGATG+CGG | + | chr5.1:40104281-40104300 | MS.gene78786:CDS | 40.0% | |
| ACCAGTTCAGTGAGTAGAAA+AGG | - | chr5.1:40103433-40103452 | None:intergenic | 40.0% | |
| CAGGAAGAAGTTGCAAAAAG+AGG | + | chr5.1:40104051-40104070 | MS.gene78786:intron | 40.0% | |
| CCAGTTCAGTGAGTAGAAAA+GGG | - | chr5.1:40103432-40103451 | None:intergenic | 40.0% | |
| CGTAGTGTGAAAGAAACAAC+CGG | + | chr5.1:40104760-40104779 | MS.gene78786:CDS | 40.0% | |
| GATCTATTGTCCAGAAGTTC+TGG | + | chr5.1:40104808-40104827 | MS.gene78786:CDS | 40.0% | |
| GGCCATCTGCCATAAATAAT+TGG | + | chr5.1:40104830-40104849 | MS.gene78786:CDS | 40.0% | |
| GTTGTAGAATGTGCTCTTTG+TGG | + | chr5.1:40104868-40104887 | MS.gene78786:CDS | 40.0% | |
| TAATTCACAGTACCATGGAC+CGG | - | chr5.1:40104782-40104801 | None:intergenic | 40.0% | |
| TAGAAAGAGTCTCTTTGGCA+CGG | - | chr5.1:40104488-40104507 | None:intergenic | 40.0% | |
| TGAAGTTGGATGCCTTAAGT+GGG | + | chr5.1:40104433-40104452 | MS.gene78786:CDS | 40.0% | |
| TGAGAGTTCCAAAACTCTCT+CGG | - | chr5.1:40103860-40103879 | None:intergenic | 40.0% | |
| TTGAAGTTGGATGCCTTAAG+TGG | + | chr5.1:40104432-40104451 | MS.gene78786:CDS | 40.0% | |
| !!! | AGTTTTGGAACTCTCATTGG+AGG | + | chr5.1:40103864-40103883 | MS.gene78786:CDS | 40.0% |
| !!! | GAGAGTTTTGGAACTCTCAT+TGG | + | chr5.1:40103861-40103880 | MS.gene78786:CDS | 40.0% |
| AGAAAGAGTCTCTTTGGCAC+GGG | - | chr5.1:40104487-40104506 | None:intergenic | 45.0% | |
| CAACCAGAGCATAGTAGGAT+AGG | - | chr5.1:40104633-40104652 | None:intergenic | 45.0% | |
| CTTGATCTTAGAGAGGCAAC+AGG | + | chr5.1:40104324-40104343 | MS.gene78786:CDS | 45.0% | |
| GTAGAATGTGCTCTTTGTGG+TGG | + | chr5.1:40104871-40104890 | MS.gene78786:CDS | 45.0% | |
| TGAAAGAAACAACCGGTCCA+TGG | + | chr5.1:40104767-40104786 | MS.gene78786:CDS | 45.0% | |
| TTGTCTTTCACCTGCTCAGA+AGG | - | chr5.1:40103169-40103188 | None:intergenic | 45.0% | |
| ! | CCCTTTTCTACTCACTGAAC+TGG | + | chr5.1:40103429-40103448 | MS.gene78786:intron | 45.0% |
| ! | GTGGTACTACTGGTGCTTTT+AGG | + | chr5.1:40104890-40104909 | MS.gene78786:CDS | 45.0% |
| ! | TGCTCTGGTTGCAAGGTTTT+AGG | + | chr5.1:40104642-40104661 | MS.gene78786:intron | 45.0% |
| ! | TTTTCAGCATAGACTGCTGC+AGG | + | chr5.1:40104032-40104051 | MS.gene78786:intron | 45.0% |
| !!! | AAGGTTTTAGGACTCATCCC+TGG | + | chr5.1:40104654-40104673 | MS.gene78786:intron | 45.0% |
| AATCTCCTGGGGCAAACTCT+TGG | - | chr5.1:40104253-40104272 | None:intergenic | 50.0% | |
| AGTTGGATGCCTTAAGTGGG+CGG | + | chr5.1:40104436-40104455 | MS.gene78786:CDS | 50.0% | |
| CCTACTATGCTCTGGTTGCA+AGG | + | chr5.1:40104635-40104654 | MS.gene78786:CDS | 50.0% | |
| CCTTGCAACCAGAGCATAGT+AGG | - | chr5.1:40104638-40104657 | None:intergenic | 50.0% | |
| CTGTTAATTGGAAGGGGCAG+TGG | + | chr5.1:40103799-40103818 | MS.gene78786:intron | 50.0% | |
| GAAAGAGTCTCTTTGGCACG+GGG | - | chr5.1:40104486-40104505 | None:intergenic | 50.0% | |
| GATCTTAGAGAGGCAACAGG+AGG | + | chr5.1:40104327-40104346 | MS.gene78786:CDS | 50.0% | |
| GCTCTTTGTGGTGGTACTAC+TGG | + | chr5.1:40104880-40104899 | MS.gene78786:CDS | 50.0% | |
| TTGGAGGAAGCTCGTCAACT+TGG | + | chr5.1:40103880-40103899 | MS.gene78786:CDS | 50.0% | |
| TCCAAAACTCTCTCGGCACG+CGG | - | chr5.1:40103853-40103872 | None:intergenic | 55.0% | |
| TGTTGCCAAGAGTTTGCCCC+AGG | + | chr5.1:40104245-40104264 | MS.gene78786:CDS | 55.0% | |
| GATGCCTTAAGTGGGCGGAC+TGG | + | chr5.1:40104441-40104460 | MS.gene78786:CDS | 60.0% | |
| GGCAGATGGCCCAGAACTTC+TGG | - | chr5.1:40104821-40104840 | None:intergenic | 60.0% | |
| GTCTCTTTGGCACGGGGCAT+TGG | - | chr5.1:40104480-40104499 | None:intergenic | 60.0% | |
| TGGACCAGTCCGCCCACTTA+AGG | - | chr5.1:40104448-40104467 | None:intergenic | 60.0% | |
| ! | TCCGCGTGCCGAGAGAGTTT+TGG | + | chr5.1:40103849-40103868 | MS.gene78786:CDS | 60.0% |
| !! | CGGGGCATTGGCTGAGAACA+TGG | - | chr5.1:40104468-40104487 | None:intergenic | 60.0% |
| !! | CAGAAGTGCTCTCGCGGCGA+TGG | + | chr5.1:40103025-40103044 | MS.gene78786:CDS | 65.0% |
| !! | CATCGCCGCGAGAGCACTTC+TGG | - | chr5.1:40103027-40103046 | None:intergenic | 65.0% |
| !! | GCCGCGAGAGCACTTCTGGC+CGG | - | chr5.1:40103023-40103042 | None:intergenic | 70.0% |
| !! | GCCGGCCAGAAGTGCTCTCG+CGG | + | chr5.1:40103019-40103038 | MS.gene78786:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 40103014 | 40104915 | 40103014 | ID=MS.gene78786 |
| chr5.1 | mRNA | 40103014 | 40104915 | 40103014 | ID=MS.gene78786.t1;Parent=MS.gene78786 |
| chr5.1 | exon | 40103014 | 40103078 | 40103014 | ID=MS.gene78786.t1.exon1;Parent=MS.gene78786.t1 |
| chr5.1 | CDS | 40103014 | 40103078 | 40103014 | ID=cds.MS.gene78786.t1;Parent=MS.gene78786.t1 |
| chr5.1 | exon | 40103813 | 40103901 | 40103813 | ID=MS.gene78786.t1.exon2;Parent=MS.gene78786.t1 |
| chr5.1 | CDS | 40103813 | 40103901 | 40103813 | ID=cds.MS.gene78786.t1;Parent=MS.gene78786.t1 |
| chr5.1 | exon | 40104229 | 40104529 | 40104229 | ID=MS.gene78786.t1.exon3;Parent=MS.gene78786.t1 |
| chr5.1 | CDS | 40104229 | 40104529 | 40104229 | ID=cds.MS.gene78786.t1;Parent=MS.gene78786.t1 |
| chr5.1 | exon | 40104563 | 40104656 | 40104563 | ID=MS.gene78786.t1.exon4;Parent=MS.gene78786.t1 |
| chr5.1 | CDS | 40104563 | 40104656 | 40104563 | ID=cds.MS.gene78786.t1;Parent=MS.gene78786.t1 |
| chr5.1 | exon | 40104736 | 40104915 | 40104736 | ID=MS.gene78786.t1.exon5;Parent=MS.gene78786.t1 |
| chr5.1 | CDS | 40104736 | 40104915 | 40104736 | ID=cds.MS.gene78786.t1;Parent=MS.gene78786.t1 |
| Gene Sequence |
| Protein sequence |
