AlfalfaGEDB | MS.gene78806

M. sativa cultivar XinJiangDaYe / MS.gene78806

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1901363
PFAM: PF00072.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78806.t1	XP_013455021.1	88.6	219	23	1	1	219	1	217	6.60E-102	380.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78806.t1	Q8L9Y3	39.2	250	111	6	7	219	4	249	1.2e-40	167.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78806.t1	A0A072UH32	88.6	219	23	1	1	219	1	217	4.7e-102	380.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene78806.t1	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78806.t1	MTR_4g021845	88.584	219	23	1	1	219	1	217	8.56e-143	397
MS.gene78806.t1	MTR_4g021855	84.018	219	33	1	1	219	1	217	1.03e-133	378
MS.gene78806.t1	MTR_4g021760	82.727	220	35	2	1	219	1	218	1.15e-131	373
MS.gene78806.t1	MTR_4g021790	82.192	219	37	1	1	219	1	217	1.01e-129	367
MS.gene78806.t1	MTR_5g055260	60.274	219	58	5	1	219	1	190	2.41e-81	243
MS.gene78806.t1	MTR_4g023980	79.137	139	27	1	55	193	35	171	4.53e-78	232
MS.gene78806.t1	MTR_1g032570	44.813	241	100	5	10	219	11	249	8.16e-64	209
MS.gene78806.t1	MTR_3g086100	40.336	238	112	4	10	219	13	248	4.92e-54	182
MS.gene78806.t1	MTR_8g079940	40.506	237	113	4	9	219	24	258	8.79e-54	180
MS.gene78806.t1	MTR_6g045327	46.698	212	107	4	10	219	14	221	1.02e-53	177

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78806.t1	AT2G01760	39.200	250	111	6	7	219	4	249	2.98e-55	181
MS.gene78806.t1	AT1G67710	40.678	236	113	5	11	219	8	243	6.18e-50	170
MS.gene78806.t1	AT2G01760	35.252	278	111	7	7	219	4	277	2.25e-49	166
MS.gene78806.t1	AT3G16857	37.008	254	116	4	10	219	33	286	1.55e-47	166
MS.gene78806.t1	AT3G16857	37.008	254	116	4	10	219	33	286	1.92e-47	166
MS.gene78806.t1	AT4G31920	38.636	220	125	2	10	219	13	232	6.97e-46	160
MS.gene78806.t1	AT2G25180	38.136	236	116	4	10	219	13	244	3.02e-44	156
MS.gene78806.t1	AT5G58080	38.197	233	118	6	10	219	14	243	2.37e-37	137
MS.gene78806.t1	AT3G16857	37.209	215	91	6	49	219	2	216	2.15e-36	134
MS.gene78806.t1	AT5G49240	32.231	242	137	6	3	219	33	272	9.17e-36	128

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 41 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAACCTGTAAATGGC+TGG	0.535893	4.2:-80732432	None:intergenic
AAAAGAAACACATGCAAAGA+AGG	0.478150	4.2:+80732185	MS.gene78806:CDS
AAGTCATAAACATCCATGTT+TGG	0.465091	4.2:-80731784	None:intergenic
AATAAAGAATATGAAATTGT+TGG	0.416766	4.2:+80732108	MS.gene78806:CDS
AATAAATTCTTACTAATGAC+AGG	0.461511	4.2:-80731838	None:intergenic
AATGTGGGGCTTGCACATAT+TGG	0.467947	4.2:+80732010	MS.gene78806:CDS
AATTGCAATAACCTTGAGAC+CGG	0.581075	4.2:-80731462	None:intergenic
ACATCTCCTCAATAGAGTTG+AGG	0.637933	4.2:-80731502	None:intergenic
ACATGTTGCCAGCCATTTAC+AGG	0.283862	4.2:+80732424	MS.gene78806:CDS
AGAAACCGCTGATGCAGTTC+TGG	0.337779	4.2:-80732225	None:intergenic

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAACACATGCAAAGA+AGG	+	chr4.2:80732185-80732204	MS.gene78806:CDS	30.0%
AAGTCATAAACATCCATGTT+TGG	-	chr4.2:80731787-80731806	None:intergenic	30.0%
AGGAAAGAATCATACTATCA+AGG	-	chr4.2:80732272-80732291	None:intergenic	30.0%
ATATGAAATTGTTGGAAGCT+CGG	+	chr4.2:80732116-80732135	MS.gene78806:CDS	30.0%
CTTTCTTTCCAACAAATTCA+AGG	-	chr4.2:80731728-80731747	None:intergenic	30.0%
TATGAAGTCTATTGAATGTG+GGG	+	chr4.2:80731996-80732015	MS.gene78806:CDS	30.0%
AATTGCAATAACCTTGAGAC+CGG	-	chr4.2:80731465-80731484	None:intergenic	35.0%
ATCAGAAGCTGTATTGCATT+TGG	-	chr4.2:80731704-80731723	None:intergenic	35.0%
CTATATGCTGTCAATCAACT+AGG	+	chr4.2:80732246-80732265	MS.gene78806:CDS	35.0%
TAAGCCTTTGGTTGAAAAAG+AGG	+	chr4.2:80732035-80732054	MS.gene78806:CDS	35.0%

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	80731428	80732525	80731428	ID=MS.gene78806
chr4.2	mRNA	80731428	80732525	80731428	ID=MS.gene78806.t1;Parent=MS.gene78806
chr4.2	exon	80731428	80731545	80731428	ID=MS.gene78806.t1.exon1;Parent=MS.gene78806.t1
chr4.2	CDS	80731428	80731545	80731428	ID=cds.MS.gene78806.t1;Parent=MS.gene78806.t1
chr4.2	exon	80731698	80731847	80731698	ID=MS.gene78806.t1.exon2;Parent=MS.gene78806.t1
chr4.2	CDS	80731698	80731847	80731698	ID=cds.MS.gene78806.t1;Parent=MS.gene78806.t1
chr4.2	exon	80731965	80732276	80731965	ID=MS.gene78806.t1.exon3;Parent=MS.gene78806.t1
chr4.2	CDS	80731965	80732276	80731965	ID=cds.MS.gene78806.t1;Parent=MS.gene78806.t1
chr4.2	exon	80732369	80732445	80732369	ID=MS.gene78806.t1.exon4;Parent=MS.gene78806.t1
chr4.2	CDS	80732369	80732445	80732369	ID=cds.MS.gene78806.t1;Parent=MS.gene78806.t1
chr4.2	exon	80732523	80732525	80732523	ID=MS.gene78806.t1.exon5;Parent=MS.gene78806.t1
chr4.2	CDS	80732523	80732525	80732523	ID=cds.MS.gene78806.t1;Parent=MS.gene78806.t1

Gene Sequence

>MS.gene78806

ATGGCAGTTTTCACTGACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTGTCCTCAACTCTATTGAGGAGATGTGTAATCGATATCATTATCAAGGTTTGTTACTTAGTTAATTGCACCTTATTCAATTCTAAAGTTTCTACGTTCTTACTTTTATGTTTTTTCATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTCTATTCTTATGTATATTTTTATATGTTTGTTTATTTCAGTTACCAAATGCAATACAGCTTCTGATGCCTTGAATTTGTTGGAAAGAAAGGACTGTTTCGATGTAATGTTGATTGATGCTCATATGCCAAACATGGATGTTTATGACTTTGTCCAAAATGTTACCCTACAACTCAACATTCCTGTCATTAGTAAGAATTTATTCAACTTTTTCATTAAAAGTCTTTAGTTACACATTTCACATGATTTATTCATACATATGTACTTAAGAAGTGTGAACTGACATTATTATTATTTCTCTTTTGTAGTGATGGCTGTTGATTCCACAGCAAGTTCTATTATGAAGTCTATTGAATGTGGGGCTTGCACATATTGGACTAAGCCTTTGGTTGAAAAAGAGGTCAAGACCATGTGGCAACATGTAGTAAGAATTAGAAACTGTTTGACTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAAAAAATAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACATGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAACTGCATCAGCGGTTTCTATATGCTGTCAATCAACTAGGCCTTGATAGTATGATTCTTTCCTAATTACTTTTTTACTATATGCTTTGTTGCATTCTTCAACAGTTGAACTTATGTGCATGTTTTTCTCTTAATTTTCAGGGGCAACGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCGATATGAAAAAAGAACATGTTGCCAGCCATTTACAGGTTCGTTTTAGCATAAATTTTGTTGATTCTGTAAATTTGATATATTGTACCTAAGTCTAGTTGCCTAGGATTGTCAGTGA

Protein sequence

>MS.gene78806.t1

MAVFTDNPSFPAGLKVIAIDHDITVLNSIEEMCNRYHYQVTKCNTASDALNLLERKDCFDVMLIDAHMPNMDVYDFVQNVTLQLNIPVIMMAVDSTASSIMKSIECGACTYWTKPLVEKEVKTMWQHVVRIRNCLTENKEYEIVGSSVVQKNRKRGREDANASKETHAKKARLSWSPELHQRFLYAVNQLGLDRATPKKILKIMDVPDMKKEHVASHLQ