Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78909.t1 | XP_024632961.1 | 74.9 | 475 | 60 | 3 | 1 | 416 | 1 | 475 | 2.10E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78909.t1 | Q9SZL8 | 27.3 | 410 | 264 | 6 | 32 | 416 | 70 | 470 | 2.1e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78909.t1 | D3YBB9 | 69.4 | 451 | 103 | 1 | 1 | 416 | 49 | 499 | 4.8e-180 | 640.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene78909.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78909.t1 | MTR_0558s0020 | 75.000 | 296 | 38 | 2 | 1 | 260 | 1 | 296 | 3.89e-157 | 445 |
| MS.gene78909.t1 | MTR_1g083640 | 70.070 | 284 | 34 | 2 | 1 | 233 | 1 | 284 | 2.60e-136 | 392 |
| MS.gene78909.t1 | MTR_8g446020 | 61.356 | 295 | 40 | 2 | 1 | 260 | 1 | 256 | 1.39e-116 | 340 |
| MS.gene78909.t1 | MTR_6g090505 | 68.776 | 237 | 39 | 1 | 65 | 266 | 1 | 237 | 1.21e-108 | 324 |
| MS.gene78909.t1 | MTR_2g014100 | 68.163 | 245 | 34 | 2 | 1 | 201 | 1 | 245 | 2.00e-107 | 317 |
| MS.gene78909.t1 | MTR_0337s0040 | 59.231 | 260 | 31 | 3 | 1 | 224 | 1 | 221 | 1.09e-90 | 273 |
| MS.gene78909.t1 | MTR_4g040430 | 69.697 | 198 | 29 | 1 | 1 | 167 | 1 | 198 | 2.57e-89 | 269 |
| MS.gene78909.t1 | MTR_3g008240 | 67.980 | 203 | 29 | 2 | 1 | 167 | 1 | 203 | 6.67e-85 | 258 |
| MS.gene78909.t1 | MTR_5g071590 | 68.939 | 132 | 28 | 2 | 1 | 119 | 1 | 132 | 2.96e-56 | 184 |
| MS.gene78909.t1 | MTR_1281s0010 | 79.208 | 101 | 21 | 0 | 19 | 119 | 1 | 101 | 4.58e-52 | 170 |
| MS.gene78909.t1 | MTR_1g055240 | 62.676 | 142 | 18 | 1 | 91 | 197 | 3 | 144 | 1.61e-51 | 170 |
| MS.gene78909.t1 | MTR_0019s0290 | 59.868 | 152 | 26 | 2 | 82 | 198 | 9 | 160 | 6.92e-51 | 169 |
| MS.gene78909.t1 | MTR_4g008820 | 85.000 | 80 | 11 | 1 | 1 | 79 | 125 | 204 | 6.50e-34 | 134 |
| MS.gene78909.t1 | MTR_6g051425 | 30.719 | 306 | 170 | 6 | 40 | 306 | 22 | 324 | 3.10e-33 | 127 |
| MS.gene78909.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 3.35e-33 | 124 |
| MS.gene78909.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 224 | 259 | 14 | 49 | 1.12e-13 | 66.2 |
| MS.gene78909.t1 | MTR_1g070355 | 25.941 | 239 | 147 | 5 | 41 | 256 | 80 | 311 | 1.37e-13 | 72.8 |
| MS.gene78909.t1 | MTR_7g074790 | 27.381 | 168 | 100 | 5 | 31 | 187 | 3 | 159 | 7.69e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78909.t1 | AT4G38180 | 27.561 | 410 | 263 | 7 | 32 | 416 | 70 | 470 | 1.03e-45 | 169 |
| MS.gene78909.t1 | AT3G06250 | 27.132 | 387 | 240 | 9 | 34 | 413 | 189 | 540 | 1.49e-38 | 148 |
| MS.gene78909.t1 | AT3G06250 | 27.132 | 387 | 240 | 9 | 34 | 413 | 189 | 540 | 1.49e-38 | 148 |
| MS.gene78909.t1 | AT3G06250 | 27.132 | 387 | 240 | 9 | 34 | 413 | 189 | 540 | 1.49e-38 | 148 |
| MS.gene78909.t1 | AT2G27110 | 26.603 | 421 | 269 | 10 | 4 | 413 | 23 | 414 | 1.91e-35 | 139 |
| MS.gene78909.t1 | AT2G27110 | 26.603 | 421 | 269 | 10 | 4 | 413 | 23 | 414 | 1.91e-35 | 139 |
| MS.gene78909.t1 | AT5G18960 | 25.815 | 399 | 253 | 11 | 24 | 413 | 200 | 564 | 3.52e-34 | 135 |
| MS.gene78909.t1 | AT5G18960 | 25.815 | 399 | 253 | 11 | 24 | 413 | 200 | 564 | 3.52e-34 | 135 |
| MS.gene78909.t1 | AT2G27110 | 31.092 | 238 | 158 | 2 | 178 | 413 | 36 | 269 | 5.19e-34 | 134 |
| MS.gene78909.t1 | AT4G15090 | 25.128 | 390 | 260 | 7 | 50 | 416 | 66 | 446 | 3.03e-31 | 127 |
| MS.gene78909.t1 | AT4G15090 | 25.128 | 390 | 260 | 7 | 50 | 416 | 66 | 446 | 3.03e-31 | 127 |
| MS.gene78909.t1 | AT4G15090 | 25.128 | 390 | 260 | 7 | 50 | 416 | 66 | 446 | 3.03e-31 | 127 |
| MS.gene78909.t1 | AT4G15090 | 25.128 | 390 | 260 | 7 | 50 | 416 | 66 | 446 | 3.03e-31 | 127 |
| MS.gene78909.t1 | AT4G15090 | 25.128 | 390 | 260 | 7 | 50 | 416 | 66 | 446 | 3.03e-31 | 127 |
| MS.gene78909.t1 | AT4G38170 | 30.594 | 219 | 141 | 4 | 200 | 415 | 24 | 234 | 2.24e-30 | 123 |
| MS.gene78909.t1 | AT5G28530 | 25.420 | 417 | 258 | 12 | 40 | 416 | 60 | 463 | 2.92e-29 | 120 |
| MS.gene78909.t1 | AT5G28530 | 25.420 | 417 | 258 | 12 | 40 | 416 | 60 | 463 | 3.11e-29 | 120 |
| MS.gene78909.t1 | AT5G28530 | 25.420 | 417 | 258 | 12 | 40 | 416 | 60 | 463 | 3.11e-29 | 120 |
| MS.gene78909.t1 | AT1G76320 | 26.042 | 384 | 249 | 11 | 50 | 413 | 12 | 380 | 1.32e-28 | 118 |
| MS.gene78909.t1 | AT1G76320 | 26.042 | 384 | 249 | 11 | 50 | 413 | 12 | 380 | 2.01e-28 | 118 |
| MS.gene78909.t1 | AT1G76320 | 26.042 | 384 | 249 | 11 | 50 | 413 | 12 | 380 | 2.17e-28 | 118 |
| MS.gene78909.t1 | AT1G76320 | 26.042 | 384 | 249 | 11 | 50 | 413 | 12 | 380 | 2.17e-28 | 118 |
| MS.gene78909.t1 | AT1G10240 | 25.686 | 401 | 251 | 11 | 49 | 416 | 62 | 448 | 3.99e-27 | 114 |
| MS.gene78909.t1 | AT1G10240 | 25.686 | 401 | 251 | 11 | 49 | 416 | 62 | 448 | 3.99e-27 | 114 |
| MS.gene78909.t1 | AT3G22170 | 22.613 | 398 | 282 | 9 | 34 | 416 | 69 | 455 | 4.10e-27 | 114 |
| MS.gene78909.t1 | AT3G22170 | 22.613 | 398 | 282 | 9 | 34 | 416 | 69 | 455 | 4.10e-27 | 114 |
| MS.gene78909.t1 | AT2G32250 | 25.613 | 367 | 214 | 8 | 25 | 375 | 30 | 353 | 8.52e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.613 | 367 | 214 | 8 | 25 | 375 | 30 | 353 | 8.52e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.613 | 367 | 214 | 8 | 25 | 375 | 30 | 353 | 9.11e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.613 | 367 | 214 | 8 | 25 | 375 | 30 | 353 | 9.11e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.613 | 367 | 214 | 8 | 25 | 375 | 30 | 353 | 9.11e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.064 | 391 | 232 | 9 | 1 | 375 | 8 | 353 | 9.68e-27 | 113 |
| MS.gene78909.t1 | AT2G32250 | 25.731 | 342 | 197 | 7 | 50 | 375 | 12 | 312 | 2.05e-26 | 112 |
| MS.gene78909.t1 | AT2G32250 | 25.731 | 342 | 197 | 7 | 50 | 375 | 12 | 312 | 2.36e-26 | 112 |
| MS.gene78909.t1 | AT1G80010 | 25.815 | 368 | 226 | 12 | 41 | 375 | 101 | 454 | 3.01e-26 | 111 |
| MS.gene78909.t1 | AT1G52520 | 24.227 | 388 | 264 | 10 | 41 | 413 | 91 | 463 | 2.66e-23 | 102 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 41 | 408 | 1.06e-21 | 98.2 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 27 | 394 | 1.15e-21 | 98.2 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 27 | 394 | 1.15e-21 | 98.2 |
| MS.gene78909.t1 | AT4G19990 | 28.390 | 236 | 162 | 4 | 184 | 416 | 106 | 337 | 1.16e-21 | 97.8 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 27 | 394 | 1.21e-21 | 97.8 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 27 | 394 | 1.65e-21 | 97.4 |
| MS.gene78909.t1 | AT4G19990 | 24.607 | 382 | 268 | 10 | 41 | 416 | 27 | 394 | 1.65e-21 | 97.4 |
Find 58 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 8.3:-55872816 | MS.gene78909:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 8.3:-55873097 | MS.gene78909:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 8.3:-55873518 | MS.gene78909:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 8.3:-55873064 | MS.gene78909:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 8.3:+55872970 | None:intergenic |
| GCCGATATTTATTGTTTGTT+TGG | 0.294260 | 8.3:+55873468 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 8.3:-55872775 | MS.gene78909:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 8.3:+55872952 | None:intergenic |
| GTATGCATTGTTCTTCAGTT+TGG | 0.356887 | 8.3:-55872676 | MS.gene78909:CDS |
| TATGCATTGTTCTTCAGTTT+GGG | 0.360129 | 8.3:-55872675 | MS.gene78909:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 8.3:-55873461 | MS.gene78909:intron |
| ACCAAACAAACAATAAATAT+CGG | 0.389395 | 8.3:-55873469 | MS.gene78909:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 8.3:+55873996 | None:intergenic |
| GACGACTCGTCAAAAGGATA+TGG | 0.397521 | 8.3:-55873672 | MS.gene78909:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 8.3:+55874235 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 8.3:-55874225 | MS.gene78909:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 8.3:-55874154 | MS.gene78909:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8.3:-55873821 | MS.gene78909:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 8.3:+55872959 | None:intergenic |
| TCAATTCCGAATGTCTTTCA+AGG | 0.447964 | 8.3:-55872917 | MS.gene78909:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 8.3:-55874071 | MS.gene78909:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 8.3:-55873791 | MS.gene78909:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 8.3:-55874300 | MS.gene78909:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 8.3:-55872885 | MS.gene78909:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 8.3:-55872721 | MS.gene78909:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 8.3:-55874105 | MS.gene78909:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.484857 | 8.3:-55873678 | MS.gene78909:CDS |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 8.3:-55874167 | MS.gene78909:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 8.3:-55874111 | MS.gene78909:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 8.3:+55873084 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 8.3:-55872774 | MS.gene78909:CDS |
| GCTAAAGAAATCAGAGGAAA+GGG | 0.497505 | 8.3:-55873972 | MS.gene78909:intron |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 8.3:+55873573 | None:intergenic |
| ATTGTTCTTCAGTTTGGGTG+AGG | 0.507113 | 8.3:-55872670 | MS.gene78909:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 8.3:+55873707 | None:intergenic |
| AGCTAAAGAAATCAGAGGAA+AGG | 0.522165 | 8.3:-55873973 | MS.gene78909:CDS |
| CGTCAAAAGGATATGGTGGC+TGG | 0.527645 | 8.3:-55873665 | MS.gene78909:CDS |
| AAAACACCTTGAAAGACATT+CGG | 0.532489 | 8.3:+55872911 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 8.3:-55874060 | MS.gene78909:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 8.3:-55874235 | MS.gene78909:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8.3:-55874059 | MS.gene78909:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 8.3:-55873759 | MS.gene78909:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 8.3:+55872939 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 8.3:-55873611 | MS.gene78909:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 8.3:-55874276 | MS.gene78909:CDS |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 8.3:-55873738 | MS.gene78909:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 8.3:-55872953 | MS.gene78909:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 8.3:-55873746 | MS.gene78909:CDS |
| GACTCGTCAAAAGGATATGG+TGG | 0.609948 | 8.3:-55873669 | MS.gene78909:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 8.3:-55874311 | MS.gene78909:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 8.3:+55872719 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 8.3:+55874011 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 8.3:-55873743 | MS.gene78909:CDS |
| GAGAAAGCTAAAGAAATCAG+AGG | 0.634632 | 8.3:-55873978 | MS.gene78909:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 8.3:-55872884 | MS.gene78909:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 8.3:-55873758 | MS.gene78909:CDS |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 8.3:-55873752 | MS.gene78909:CDS |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 8.3:-55872957 | MS.gene78909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATGTATATAAGATATAT+AGG | - | chr8.3:55873050-55873069 | MS.gene78909:CDS | 15.0% |
| !! | ACCAAACAAACAATAAATAT+CGG | - | chr8.3:55873488-55873507 | MS.gene78909:CDS | 20.0% |
| !! | ATGTATATAAGATATATAGG+TGG | - | chr8.3:55873053-55873072 | MS.gene78909:CDS | 20.0% |
| !! | ATTAAATTCTAAGTCAAGAT+AGG | + | chr8.3:55873701-55873720 | None:intergenic | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr8.3:55872846-55872865 | MS.gene78909:CDS | 20.0% |
| !! | TGTATATAAGATATATAGGT+GGG | - | chr8.3:55873054-55873073 | MS.gene78909:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr8.3:55872790-55872809 | MS.gene78909:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr8.3:55873671-55873690 | MS.gene78909:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr8.3:55874211-55874230 | MS.gene78909:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr8.3:55873643-55873662 | MS.gene78909:CDS | 20.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr8.3:55872852-55872871 | MS.gene78909:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr8.3:55873514-55873533 | None:intergenic | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr8.3:55872681-55872700 | MS.gene78909:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr8.3:55873561-55873580 | MS.gene78909:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr8.3:55874141-55874160 | MS.gene78909:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr8.3:55873663-55873682 | MS.gene78909:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr8.3:55873831-55873850 | MS.gene78909:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr8.3:55873401-55873420 | MS.gene78909:intron | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr8.3:55873402-55873421 | MS.gene78909:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr8.3:55872842-55872861 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr8.3:55873166-55873185 | MS.gene78909:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr8.3:55874215-55874234 | MS.gene78909:CDS | 25.0% |
| AAAACACCTTGAAAGACATT+CGG | + | chr8.3:55874049-55874068 | None:intergenic | 30.0% | |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr8.3:55873097-55873116 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr8.3:55872898-55872917 | MS.gene78909:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr8.3:55873496-55873515 | MS.gene78909:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr8.3:55874182-55874201 | MS.gene78909:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr8.3:55873199-55873218 | MS.gene78909:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr8.3:55874183-55874202 | MS.gene78909:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr8.3:55873876-55873895 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr8.3:55873439-55873458 | MS.gene78909:intron | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr8.3:55872725-55872744 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr8.3:55872722-55872741 | MS.gene78909:CDS | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr8.3:55873600-55873619 | MS.gene78909:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr8.3:55874097-55874116 | MS.gene78909:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+TGG | + | chr8.3:55873492-55873511 | None:intergenic | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr8.3:55872732-55872751 | MS.gene78909:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr8.3:55872897-55872916 | MS.gene78909:CDS | 30.0% | |
| TATGCATTGTTCTTCAGTTT+GGG | - | chr8.3:55874282-55874301 | MS.gene78909:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr8.3:55873367-55873386 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr8.3:55873253-55873272 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | - | chr8.3:55873790-55873809 | MS.gene78909:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr8.3:55873018-55873037 | MS.gene78909:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr8.3:55873243-55873262 | MS.gene78909:intron | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr8.3:55873990-55874009 | None:intergenic | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr8.3:55873575-55873594 | MS.gene78909:CDS | 30.0% |
| AGCTAAAGAAATCAGAGGAA+AGG | - | chr8.3:55872984-55873003 | MS.gene78909:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr8.3:55872803-55872822 | MS.gene78909:CDS | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr8.3:55872646-55872665 | MS.gene78909:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr8.3:55873136-55873155 | MS.gene78909:intron | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr8.3:55872886-55872905 | MS.gene78909:CDS | 35.0% | |
| GAGAAAGCTAAAGAAATCAG+AGG | - | chr8.3:55872979-55872998 | MS.gene78909:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr8.3:55873198-55873217 | MS.gene78909:intron | 35.0% | |
| GCTAAAGAAATCAGAGGAAA+GGG | - | chr8.3:55872985-55873004 | MS.gene78909:CDS | 35.0% | |
| GTATGCATTGTTCTTCAGTT+TGG | - | chr8.3:55874281-55874300 | MS.gene78909:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr8.3:55872923-55872942 | MS.gene78909:CDS | 35.0% | |
| TCAATTCCGAATGTCTTTCA+AGG | - | chr8.3:55874040-55874059 | MS.gene78909:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr8.3:55872964-55872983 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr8.3:55873893-55873912 | MS.gene78909:intron | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr8.3:55874065-55874084 | MS.gene78909:CDS | 35.0% |
| !! | GTCTTTCAAGGTGTTTTTCA+TGG | - | chr8.3:55874052-55874071 | MS.gene78909:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr8.3:55873936-55873955 | MS.gene78909:intron | 35.0% |
| AAGAAATCAGAGGAAAGGGT+TGG | - | chr8.3:55872989-55873008 | MS.gene78909:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr8.3:55873730-55873749 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr8.3:55872657-55872676 | MS.gene78909:CDS | 40.0% | |
| ATTGTTCTTCAGTTTGGGTG+AGG | - | chr8.3:55874287-55874306 | MS.gene78909:CDS | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr8.3:55873860-55873879 | MS.gene78909:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr8.3:55874000-55874019 | MS.gene78909:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr8.3:55873726-55873745 | MS.gene78909:CDS | 40.0% | |
| TCTAATGACGACTCGTCAAA+AGG | - | chr8.3:55873279-55873298 | MS.gene78909:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr8.3:55874001-55874020 | None:intergenic | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr8.3:55874241-55874260 | None:intergenic | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr8.3:55873581-55873600 | MS.gene78909:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr8.3:55872937-55872956 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr8.3:55873205-55873224 | MS.gene78909:intron | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr8.3:55873409-55873428 | MS.gene78909:intron | 40.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr8.3:55873346-55873365 | MS.gene78909:intron | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr8.3:55872949-55872968 | None:intergenic | 45.0% | |
| GACGACTCGTCAAAAGGATA+TGG | - | chr8.3:55873285-55873304 | MS.gene78909:intron | 45.0% | |
| GACTCGTCAAAAGGATATGG+TGG | - | chr8.3:55873288-55873307 | MS.gene78909:intron | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr8.3:55874236-55874255 | MS.gene78909:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr8.3:55873387-55873406 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr8.3:55874304-55874323 | MS.gene78909:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr8.3:55873001-55873020 | MS.gene78909:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr8.3:55874008-55874027 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr8.3:55874004-55874023 | MS.gene78909:CDS | 50.0% | |
| CGTCAAAAGGATATGGTGGC+TGG | - | chr8.3:55873292-55873311 | MS.gene78909:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr8.3:55874073-55874092 | MS.gene78909:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr8.3:55874072-55874091 | MS.gene78909:CDS | 50.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr8.3:55873211-55873230 | MS.gene78909:intron | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr8.3:55874021-55874040 | None:intergenic | 55.0% | |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr8.3:55873214-55873233 | MS.gene78909:intron | 55.0% |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr8.3:55873219-55873238 | MS.gene78909:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 55872637 | 55874342 | 55872637 | ID=MS.gene78909 |
| chr8.3 | mRNA | 55872637 | 55874342 | 55872637 | ID=MS.gene78909.t1;Parent=MS.gene78909 |
| chr8.3 | exon | 55873973 | 55874342 | 55873973 | ID=MS.gene78909.t1.exon1;Parent=MS.gene78909.t1 |
| chr8.3 | CDS | 55873973 | 55874342 | 55873973 | ID=cds.MS.gene78909.t1;Parent=MS.gene78909.t1 |
| chr8.3 | exon | 55873462 | 55873869 | 55873462 | ID=MS.gene78909.t1.exon2;Parent=MS.gene78909.t1 |
| chr8.3 | CDS | 55873462 | 55873869 | 55873462 | ID=cds.MS.gene78909.t1;Parent=MS.gene78909.t1 |
| chr8.3 | exon | 55872637 | 55873109 | 55872637 | ID=MS.gene78909.t1.exon3;Parent=MS.gene78909.t1 |
| chr8.3 | CDS | 55872637 | 55873109 | 55872637 | ID=cds.MS.gene78909.t1;Parent=MS.gene78909.t1 |
| Gene Sequence |
| Protein sequence |
