AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78932

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78932.t1 MTR_5g029680 97.410 502 13 0 1 502 1 502 0.0 1008
MS.gene78932.t1 MTR_4g077970 47.410 502 208 19 31 499 11 489 7.90e-126 376
MS.gene78932.t1 MTR_7g095680 58.009 231 93 1 9 239 26 252 5.82e-89 277
MS.gene78932.t1 MTR_1g102860 58.120 234 84 6 10 239 16 239 1.18e-82 259
MS.gene78932.t1 MTR_3g104550 56.696 224 83 4 19 240 33 244 1.03e-81 259
MS.gene78932.t1 MTR_1g061170 50.607 247 108 4 18 264 35 267 1.27e-75 245
MS.gene78932.t1 MTR_8g105780 46.125 271 128 6 32 300 22 276 1.16e-66 219
MS.gene78932.t1 MTR_1g071360 49.782 229 93 4 19 244 19 228 6.43e-66 216
MS.gene78932.t1 MTR_1g071360 49.782 229 93 4 19 244 16 225 1.14e-65 217
MS.gene78932.t1 MTR_8g087540 53.763 186 75 2 31 214 11 187 6.85e-64 213
MS.gene78932.t1 MTR_6g043060 50.711 211 90 4 32 242 22 218 1.04e-63 210
MS.gene78932.t1 MTR_2g100680 47.907 215 99 2 26 240 25 226 9.90e-63 211
MS.gene78932.t1 MTR_8g083100 50.952 210 89 4 33 242 23 218 1.30e-62 212
MS.gene78932.t1 MTR_2g100670 50.000 198 88 1 20 217 21 207 4.96e-61 202
MS.gene78932.t1 MTR_2g100670 51.042 192 83 1 26 217 135 315 7.71e-60 203
MS.gene78932.t1 MTR_6g086805 46.009 213 101 5 28 240 7 205 7.56e-55 187
MS.gene78932.t1 MTR_2g017890 44.865 185 98 2 31 215 14 194 3.59e-51 179
MS.gene78932.t1 MTR_3g101870 43.147 197 64 2 29 177 21 217 2.37e-45 163
MS.gene78932.t1 MTR_5g010680 73.404 94 25 0 30 123 22 115 8.38e-45 161
MS.gene78932.t1 MTR_4g077970 37.741 363 173 17 169 499 1 342 2.12e-44 160
MS.gene78932.t1 MTR_5g089170 46.073 191 91 2 29 207 22 212 1.25e-43 155
MS.gene78932.t1 MTR_5g017470 46.369 179 64 3 29 178 6 181 3.22e-42 152
MS.gene78932.t1 MTR_7g091370 49.342 152 75 1 29 178 19 170 5.30e-42 150
MS.gene78932.t1 MTR_1g100777 68.085 94 30 0 30 123 16 109 5.33e-42 152
MS.gene78932.t1 MTR_0020s0020 67.021 94 31 0 30 123 31 124 4.11e-40 148
MS.gene78932.t1 MTR_1g061170 43.931 173 83 4 92 264 14 172 9.71e-36 137
MS.gene78932.t1 MTR_4g088900 37.017 181 96 3 29 205 30 196 1.60e-32 124
MS.gene78932.t1 MTR_4g045757 69.355 62 19 0 28 89 10 71 4.42e-24 96.3
MS.gene78932.t1 MTR_5g047190 45.361 97 46 2 40 129 1 97 1.14e-21 90.1
MS.gene78932.t1 MTR_6g044340 32.727 165 97 4 78 242 8 158 4.62e-19 87.4
MS.gene78932.t1 MTR_2g043940 31.973 147 83 4 70 214 9 140 1.92e-16 81.3
MS.gene78932.t1 MTR_1g061170 40.625 96 52 2 169 264 1 91 3.95e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78932.t1 AT1G32330 54.028 509 168 14 9 496 11 474 1.09e-165 478
MS.gene78932.t1 AT1G32330 54.028 509 168 14 9 496 11 474 1.68e-165 477
MS.gene78932.t1 AT4G17750 49.153 531 189 15 1 501 16 495 2.20e-145 426
MS.gene78932.t1 AT5G16820 50.487 513 189 14 18 501 4 480 1.52e-137 405
MS.gene78932.t1 AT5G16820 50.487 513 189 14 18 501 4 480 1.52e-137 405
MS.gene78932.t1 AT3G02990 48.971 486 193 16 31 501 22 467 1.31e-124 372
MS.gene78932.t1 AT3G22830 57.080 226 96 1 14 239 43 267 1.35e-83 265
MS.gene78932.t1 AT2G26150 57.848 223 86 3 19 240 31 246 2.00e-82 259
MS.gene78932.t1 AT2G26150 57.848 223 86 3 19 240 31 246 2.00e-82 259
MS.gene78932.t1 AT3G51910 52.074 217 80 4 25 239 22 216 1.32e-68 221
MS.gene78932.t1 AT5G03720 46.800 250 122 3 14 263 37 275 1.03e-67 223
MS.gene78932.t1 AT5G03720 46.800 250 122 3 14 263 37 275 1.03e-67 223
MS.gene78932.t1 AT1G67970 53.125 192 82 3 32 222 19 203 9.84e-63 209
MS.gene78932.t1 AT4G13980 46.460 226 96 5 33 255 24 227 1.87e-62 211
MS.gene78932.t1 AT3G63350 46.919 211 99 2 18 226 12 211 1.19e-60 201
MS.gene78932.t1 AT5G43840 42.915 247 110 5 18 264 5 220 1.42e-59 198
MS.gene78932.t1 AT4G18880 45.540 213 107 2 25 234 8 214 4.34e-55 190
MS.gene78932.t1 AT5G45710 37.762 286 148 5 31 311 12 272 1.67e-53 184
MS.gene78932.t1 AT5G45710 37.762 286 148 5 31 311 12 272 1.67e-53 184
MS.gene78932.t1 AT3G24520 43.750 208 87 2 32 239 17 194 1.56e-52 181
MS.gene78932.t1 AT5G54070 43.519 216 101 3 32 243 71 269 4.51e-52 180
MS.gene78932.t1 AT1G46264 45.026 191 61 3 29 177 31 219 7.91e-45 161
MS.gene78932.t1 AT2G41690 42.473 186 83 2 30 195 38 219 3.81e-42 150
MS.gene78932.t1 AT2G26150 54.667 150 60 3 92 240 49 191 5.71e-42 152
MS.gene78932.t1 AT2G26150 54.667 150 60 3 92 240 49 191 5.71e-42 152
MS.gene78932.t1 AT4G11660 68.085 94 30 0 30 123 57 150 4.58e-41 151
MS.gene78932.t1 AT4G36990 56.557 122 40 1 29 150 11 119 1.37e-40 148
MS.gene78932.t1 AT5G62020 62.626 99 37 0 30 128 21 119 2.81e-40 147
MS.gene78932.t1 AT4G18870 47.727 88 46 0 32 119 146 233 3.00e-25 105
MS.gene78932.t1 AT4G18870 49.438 89 40 2 33 119 14 99 1.85e-22 97.8
MS.gene78932.t1 AT1G77570 42.222 90 49 2 33 119 27 116 1.59e-17 80.1
MS.gene78932.t1 AT4G19630 37.778 90 53 1 33 119 12 101 1.92e-13 67.8
MS.gene78932.t1 AT5G45710 24.876 201 121 5 116 311 1 176 9.57e-11 62.8
MS.gene78932.t1 AT5G45710 24.876 201 121 5 116 311 1 176 9.57e-11 62.8

Find 139 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGTTAAGCAATTCTATT+TGG 0.145481 5.3:-18648100 MS.gene78932:CDS
TCGGTGTCGGCGCCGGTATT+TGG 0.178029 5.3:+18651715 None:intergenic
AAAATTTCAAACAGGGTTTC+AGG 0.206273 5.3:-18649156 MS.gene78932:intron
CCAACAACAGTTTCGTTGTT+TGG 0.230125 5.3:-18651599 MS.gene78932:CDS
TGTGTAGAAGTCGGCAAATT+TGG 0.235613 5.3:-18648980 MS.gene78932:CDS
TGAGGTACAGATAGAATTTC+AGG 0.240310 5.3:+18648368 None:intergenic
CGAGACAGATGATGGATTTA+TGG 0.242553 5.3:-18648189 MS.gene78932:CDS
TCACCAATCAAGTAATTATC+AGG 0.249130 5.3:+18648542 None:intergenic
CATAGATGATTAAATTCTTT+TGG 0.258523 5.3:+18647920 None:intergenic
ACCTCAAAATCCTCTGGATT+TGG 0.271461 5.3:+18648059 None:intergenic
CAAAAGGTCCCTAGCGAATT+CGG 0.275635 5.3:+18651569 None:intergenic
TGGATCATTACCCATTGATT+TGG 0.296226 5.3:-18648153 MS.gene78932:CDS
TTTGCTGTTTCATTCATCAT+AGG 0.311359 5.3:+18648626 None:intergenic
CAACAACAGTTTCGTTGTTT+GGG 0.319788 5.3:-18651598 MS.gene78932:CDS
CGGTGTCGGCGCCGGTATTT+GGG 0.322223 5.3:+18651716 None:intergenic
CAACAGATGCGATAGTTTCA+TGG 0.344788 5.3:-18651629 MS.gene78932:CDS
AACCCTGATAATTACTTGAT+TGG 0.346275 5.3:-18648545 MS.gene78932:CDS
GTCGTTGCTCCATTCCTTGA+AGG 0.347154 5.3:+18648840 None:intergenic
GTGTAGAAGTCGGCAAATTT+GGG 0.362865 5.3:-18648979 MS.gene78932:CDS
TATACCTGAAGACAATTATA+TGG 0.363191 5.3:-18648216 MS.gene78932:CDS
ACCAGGGCTTTGGACGGCTT+TGG 0.378818 5.3:+18648793 None:intergenic
TTTGCAAATTCCCAACGATC+TGG 0.381736 5.3:+18649124 None:intergenic
TCTGGTACTGAAGGTATATC+AGG 0.389774 5.3:+18648263 None:intergenic
TCTGCTCTGTTAGTTGATCC+AGG 0.390931 5.3:+18647964 None:intergenic
CAAATTTGGGCTTGAGGAAG+AGG 0.394429 5.3:-18648966 MS.gene78932:CDS
ACTCAAATTCCAGTGTCAAC+AGG 0.398893 5.3:-18648422 MS.gene78932:CDS
TTTGTTAAGCAATTCTATTT+GGG 0.398896 5.3:-18648099 MS.gene78932:CDS
GAGCAAAGAAACCAGGGCTT+TGG 0.405473 5.3:+18648783 None:intergenic
TGCTAAGGAAGATCATGAAA+TGG 0.411880 5.3:-18648598 MS.gene78932:CDS
GAGGTGCAGCCAACAGAAAA+TGG 0.412142 5.3:-18648008 MS.gene78932:CDS
TATTTAACAATTTGTCCATC+AGG 0.412857 5.3:+18648653 None:intergenic
GGAGCCATATAATTGTCTTC+AGG 0.427662 5.3:+18648212 None:intergenic
GCTTGAAGAACTTCGGCAAA+AGG 0.436166 5.3:+18651553 None:intergenic
AACAACAAAATGACAGCAAT+AGG 0.448374 5.3:-18648751 MS.gene78932:CDS
GAAACTATCGCATCTGTTGA+AGG 0.449248 5.3:+18651633 None:intergenic
TGCAGCCAACAGAAAATGGC+TGG 0.460415 5.3:-18648004 MS.gene78932:CDS
TGAAAGACAATCCAAATCAA+TGG 0.461549 5.3:+18648142 None:intergenic
GGCGCGTTCGCGTTTAGCAT+CGG 0.464774 5.3:+18651696 None:intergenic
GATGGAGCAAGCGGCGGAAG+TGG 0.466736 5.3:-18651759 MS.gene78932:CDS
ACAATGGTTCAGCGCCTTCA+AGG 0.468085 5.3:-18648854 MS.gene78932:CDS
GCTGAACCATTGTTTGCAGC+TGG 0.470479 5.3:+18648864 None:intergenic
GAAGGTTGACCCAGATCGTT+GGG 0.471844 5.3:-18649134 MS.gene78932:CDS
CCATGGTCATACTCAACAAC+AGG 0.472356 5.3:-18649041 MS.gene78932:CDS
CGTTGGGAATTTGCAAATGA+GGG 0.474986 5.3:-18649118 MS.gene78932:CDS
GCTAAGGAAGATCATGAAAT+GGG 0.481953 5.3:-18648597 MS.gene78932:CDS
GGCGGAAGTGGCGGCGGAGA+GGG 0.482090 5.3:-18651747 MS.gene78932:CDS
ATGTTGACCTCAAAATCCTC+TGG 0.485435 5.3:+18648053 None:intergenic
GAAAGACAATCCAAATCAAT+GGG 0.486613 5.3:+18648143 None:intergenic
GCCAAAGCCGTCCAAAGCCC+TGG 0.488993 5.3:-18648794 MS.gene78932:CDS
CGGCGGAAGTGGCGGCGGAG+AGG 0.492052 5.3:-18651748 MS.gene78932:CDS
ATAACATCTGCTTGAGAAGT+CGG 0.493923 5.3:+18648290 None:intergenic
TGGCTGCACCTCATTCCCTC+TGG 0.494605 5.3:+18648019 None:intergenic
CCAAACAACGAAACTGTTGT+TGG 0.495551 5.3:+18651599 None:intergenic
TTTAGCATCGGTGTCGGCGC+CGG 0.495901 5.3:+18651708 None:intergenic
CGAAATATCCAGAGGGAATG+AGG 0.497477 5.3:-18648027 MS.gene78932:CDS
CCTTGAGTCCCTGTTGACAC+TGG 0.498243 5.3:+18648413 None:intergenic
AAAAGGTCCCTAGCGAATTC+GGG 0.501028 5.3:+18651570 None:intergenic
TAACATCTGCTTGAGAAGTC+GGG 0.501630 5.3:+18648291 None:intergenic
GGGACCCACCCGAATTCGCT+AGG 0.503998 5.3:-18651578 MS.gene78932:CDS
AGCTCTACAAGCTGGAACTC+GGG 0.505067 5.3:-18648485 MS.gene78932:CDS
GCAAGCGGCGGAAGTGGCGG+CGG 0.507070 5.3:-18651753 MS.gene78932:CDS
CATAAATCCATCATCTGTCT+CGG 0.507108 5.3:+18648190 None:intergenic
CAAATCATCAATGTCTGCAC+CGG 0.507465 5.3:+18648118 None:intergenic
TCGTTGGGAATTTGCAAATG+AGG 0.508434 5.3:-18649119 MS.gene78932:CDS
CTGCTCTGTTAGTTGATCCA+GGG 0.508669 5.3:+18647965 None:intergenic
GGAGCAAGCGGCGGAAGTGG+CGG 0.510221 5.3:-18651756 MS.gene78932:CDS
TGAGTAGACTGCACTGAAGA+TGG 0.510797 5.3:+18648440 None:intergenic
TTCGCGTTTAGCATCGGTGT+CGG 0.511333 5.3:+18651702 None:intergenic
TTTATGGATCCGAGTTCACT+TGG 0.511418 5.3:-18648173 MS.gene78932:CDS
TTGCAAATTCCCAACGATCT+GGG 0.513798 5.3:+18649125 None:intergenic
TTGTTATGCTTGAAGAACTT+CGG 0.516006 5.3:+18651546 None:intergenic
TCTGCAAATGTTATGAAGGA+TGG 0.520402 5.3:-18648335 MS.gene78932:CDS
GGCTTTGGACGGCTTTGGCA+AGG 0.521460 5.3:+18648798 None:intergenic
GGTTCAGCGCCTTCAAGGAA+TGG 0.521472 5.3:-18648849 MS.gene78932:CDS
GGATCAACTAACAGAGCAGA+TGG 0.526736 5.3:-18647961 MS.gene78932:CDS
ATGGCTCCCGAGACAGATGA+TGG 0.528224 5.3:-18648197 MS.gene78932:CDS
GGAAGGTTGACCCAGATCGT+TGG 0.529784 5.3:-18649135 MS.gene78932:CDS
TAGCTCTACAAGCTGGAACT+CGG 0.530135 5.3:-18648486 MS.gene78932:CDS
TGTTTGCAGCTGGCCGTCAG+TGG 0.533443 5.3:+18648874 None:intergenic
CAAGAATTCTCCGAAATGGA+TGG 0.537798 5.3:-18651777 None:intergenic
AACAATTTGTCCATCAGGAG+GGG 0.543951 5.3:+18648658 None:intergenic
ATAAATCCATCATCTGTCTC+GGG 0.544485 5.3:+18648191 None:intergenic
GGACAATAATACTCAGCCCC+TGG 0.544550 5.3:-18647982 MS.gene78932:CDS
CTCAAATTCCAGTGTCAACA+GGG 0.545676 5.3:-18648421 MS.gene78932:CDS
TAACAATTTGTCCATCAGGA+GGG 0.546075 5.3:+18648657 None:intergenic
GGGTTCAACCACCCAAATAC+CGG 0.548137 5.3:-18651727 MS.gene78932:CDS
GAGCAAGCTACCCCTCCTGA+TGG 0.552465 5.3:-18648668 MS.gene78932:CDS
GCTACTACTGTCCATTGCAC+TGG 0.552846 5.3:+18648505 None:intergenic
GATAATTACTTGATTGGTGA+TGG 0.554314 5.3:-18648539 MS.gene78932:CDS
TGCTCTGTTAGTTGATCCAG+GGG 0.555861 5.3:+18647966 None:intergenic
CTACTGTCCATTGCACTGGA+TGG 0.557158 5.3:+18648509 None:intergenic
ATGGACAGAGTTCATCAGTA+GGG 0.560915 5.3:-18649006 MS.gene78932:CDS
TTTGCAGATGCTGCAGCTTG+AGG 0.562895 5.3:+18648350 None:intergenic
AAACAGCAAAAGCAATGCTA+AGG 0.565264 5.3:-18648613 MS.gene78932:CDS
CCAGTGTCAACAGGGACTCA+AGG 0.569636 5.3:-18648413 MS.gene78932:CDS
TTTCAAACAGGGTTTCAGGA+AGG 0.570624 5.3:-18649152 MS.gene78932:intron
GGTAATGATCCAAGTGAACT+CGG 0.570835 5.3:+18648164 None:intergenic
GATTTGGATTGTCTTTCACC+CGG 0.577390 5.3:-18648137 MS.gene78932:CDS
GGCTTGAGGAAGAGGTTGAG+AGG 0.577943 5.3:-18648958 MS.gene78932:CDS
GGCACAATCTCTGGTACTGA+AGG 0.579818 5.3:+18648254 None:intergenic
TTAACAATTTGTCCATCAGG+AGG 0.580490 5.3:+18648656 None:intergenic
CACCAATCAAGTAATTATCA+GGG 0.580602 5.3:+18648543 None:intergenic
AGCATCTGCAAATGTTATGA+AGG 0.585668 5.3:-18648339 MS.gene78932:CDS
TGTCGGCGCCGGTATTTGGG+TGG 0.587096 5.3:+18651719 None:intergenic
AGGTCCCTAGCGAATTCGGG+TGG 0.590111 5.3:+18651573 None:intergenic
TACTTCACCATCCAGTGCAA+TGG 0.590271 5.3:-18648516 MS.gene78932:CDS
CATGGACAGAGTTCATCAGT+AGG 0.591063 5.3:-18649007 MS.gene78932:CDS
ACAAACTGAGCAAAGAAACC+AGG 0.596219 5.3:+18648776 None:intergenic
GGACCCACCCGAATTCGCTA+GGG 0.598350 5.3:-18651577 MS.gene78932:CDS
TGTTGAGTATGACCATGGGC+AGG 0.599305 5.3:+18649046 None:intergenic
CAACAGGCTCAGCAACCGCA+TGG 0.606577 5.3:-18649025 MS.gene78932:CDS
AAAGAAACCAGGGCTTTGGA+CGG 0.607667 5.3:+18648787 None:intergenic
AGTCGGCAAATTTGGGCTTG+AGG 0.610170 5.3:-18648972 MS.gene78932:CDS
TTCTCATGCAAGAGCTTGTG+AGG 0.613430 5.3:-18648916 MS.gene78932:CDS
ACAGTAGTAGCTCTACAAGC+TGG 0.613534 5.3:-18648493 MS.gene78932:CDS
GTAGGGGCATGTGTAGAAGT+CGG 0.619207 5.3:-18648989 MS.gene78932:CDS
CAGCAGCAACAAACCACTGA+CGG 0.620232 5.3:-18648887 MS.gene78932:CDS
TCCGAAATGGATGGAGCAAG+CGG 0.623140 5.3:-18651768 None:intergenic
AAGCGTCGGCTCAAGCAGGA+TGG 0.626260 5.3:-18648707 MS.gene78932:CDS
AAATCATCAATGTCTGCACC+GGG 0.630153 5.3:+18648119 None:intergenic
TTTGAGCAAAACTTATGACA+TGG 0.634177 5.3:-18651664 MS.gene78932:CDS
GCAGCCAACAGAAAATGGCT+GGG 0.636582 5.3:-18648003 MS.gene78932:CDS
GATCAACTAACAGAGCAGAT+GGG 0.641177 5.3:-18647960 MS.gene78932:CDS
CTCGGGAGTAACTCTTCAAG+AGG 0.645660 5.3:-18648468 MS.gene78932:CDS
TGACGGCCAGCTGCAAACAA+TGG 0.646370 5.3:-18648870 MS.gene78932:CDS
CCTGTTGTTGAGTATGACCA+TGG 0.647258 5.3:+18649041 None:intergenic
ACATTGACGAAATATCCAGA+GGG 0.657011 5.3:-18648034 MS.gene78932:CDS
TGGACAGAGTTCATCAGTAG+GGG 0.659673 5.3:-18649005 MS.gene78932:CDS
TCTGCAAACTCCAAATCCAG+AGG 0.662021 5.3:-18648069 MS.gene78932:CDS
AGTCGAAGAAAACCTGCCCA+TGG 0.665848 5.3:-18649058 MS.gene78932:CDS
CAAACTGAGCAAAGAAACCA+GGG 0.668272 5.3:+18648777 None:intergenic
GGTCCCTAGCGAATTCGGGT+GGG 0.673393 5.3:+18651574 None:intergenic
CTGTTGTTGAGTATGACCAT+GGG 0.673452 5.3:+18649042 None:intergenic
AACATTGACGAAATATCCAG+AGG 0.685850 5.3:-18648035 MS.gene78932:CDS
GAAATGGATGGAGCAAGCGG+CGG 0.687946 5.3:-18651765 MS.gene78932:CDS
GAGCAAAACTTATGACATGG+TGG 0.697463 5.3:-18651661 MS.gene78932:CDS
GTAGACTGCACTGAAGATGG+AGG 0.697646 5.3:+18648443 None:intergenic
ACTGATGAACTCTGTCCATG+CGG 0.724135 5.3:+18649010 None:intergenic
TTATTGAAAGATTCTACACG+CGG 0.735179 5.3:+18648569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAAAATTGAAAAATGT+AGG + chr5.3:18649389-18649408 None:intergenic 15.0%
!!! AGTATTTTTCTTATAATTTG+AGG - chr5.3:18649681-18649700 MS.gene78932:intron 15.0%
!! AAAAAAAATGATTGTGAGAA+TGG + chr5.3:18648698-18648717 None:intergenic 20.0%
!! AAAAAAATGATTGTGAGAAT+GGG + chr5.3:18648697-18648716 None:intergenic 20.0%
!! CAATTAAAATGAAAGAGATA+GGG - chr5.3:18648958-18648977 MS.gene78932:CDS 20.0%
!! CATTGTATATTCAATATCAA+AGG - chr5.3:18649156-18649175 MS.gene78932:intron 20.0%
!! TATATATATTGTAGTATGCA+AGG - chr5.3:18649181-18649200 MS.gene78932:intron 20.0%
!! TCAATTAAAATGAAAGAGAT+AGG - chr5.3:18648957-18648976 MS.gene78932:CDS 20.0%
!! TTATGGAAAATAAACTTTCT+TGG - chr5.3:18650049-18650068 MS.gene78932:intron 20.0%
!! TTCCTATAAAATTTCAAACA+GGG - chr5.3:18650528-18650547 MS.gene78932:intron 20.0%
!! TTTCCTATAAAATTTCAAAC+AGG - chr5.3:18650527-18650546 MS.gene78932:intron 20.0%
!! TTTGTTAAGCAATTCTATTT+GGG - chr5.3:18651592-18651611 MS.gene78932:CDS 20.0%
!!! AAAACTTTAGCTTTTTGTTA+TGG - chr5.3:18650032-18650051 MS.gene78932:intron 20.0%
!!! AAAGTGTTTAATTTACTTTG+TGG - chr5.3:18648339-18648358 MS.gene78932:CDS 20.0%
!!! AAGTGTTTAATTTACTTTGT+GGG - chr5.3:18648340-18648359 MS.gene78932:CDS 20.0%
!!! ATCTCTTTCATTTTAATTGA+AGG + chr5.3:18648957-18648976 None:intergenic 20.0%
!!! ATTATTATGAAGAGGATTTT+AGG - chr5.3:18649218-18649237 MS.gene78932:intron 20.0%
!!! ATTTGTTAAGCAATTCTATT+TGG - chr5.3:18651591-18651610 MS.gene78932:CDS 20.0%
!!! ATTTTATAGGAAAAATAGTC+AGG + chr5.3:18650520-18650539 None:intergenic 20.0%
!!! ATTTTGTTTGATTTGAGTTT+TGG - chr5.3:18648245-18648264 MS.gene78932:CDS 20.0%
!!! TCTCACAATCATTTTTTTTT+GGG - chr5.3:18648699-18648718 MS.gene78932:CDS 20.0%
!!! TGATGTTTTTGTTAATTTGT+GGG - chr5.3:18648381-18648400 MS.gene78932:CDS 20.0%
!!! TTATTATGAAGAGGATTTTA+GGG - chr5.3:18649219-18649238 MS.gene78932:intron 20.0%
!!! TTCTCACAATCATTTTTTTT+TGG - chr5.3:18648698-18648717 MS.gene78932:CDS 20.0%
!!! TTGATGTTTTTGTTAATTTG+TGG - chr5.3:18648380-18648399 MS.gene78932:CDS 20.0%
! AAAAAGAGAGAAGACAATTA+AGG + chr5.3:18650414-18650433 None:intergenic 25.0%
! AATGTAGTTTATGATACGAT+AGG - chr5.3:18649501-18649520 MS.gene78932:intron 25.0%
! AGTAAATTTCCTTACTTTCA+CGG + chr5.3:18648930-18648949 None:intergenic 25.0%
! ATGACACTAAATGATAAAGA+GGG + chr5.3:18648743-18648762 None:intergenic 25.0%
! ATTGATTGTATCAAAACACT+AGG - chr5.3:18649843-18649862 MS.gene78932:intron 25.0%
! CTTTATTGTCAACTTAGTTA+AGG + chr5.3:18650156-18650175 None:intergenic 25.0%
! GATACAGTATGTATTCAATT+TGG - chr5.3:18649458-18649477 MS.gene78932:intron 25.0%
! GATATTGAATATACAATGCA+TGG + chr5.3:18649154-18649173 None:intergenic 25.0%
! GCTTTATAATTAACTGCTTT+AGG - chr5.3:18649552-18649571 MS.gene78932:intron 25.0%
! GTTAAGGTTCAAAAGATAAA+TGG + chr5.3:18650140-18650159 None:intergenic 25.0%
! GTTAATCAGTTACTTGATTA+TGG - chr5.3:18649119-18649138 MS.gene78932:CDS 25.0%
! TAAAATATCAGCACTCAATT+TGG - chr5.3:18650253-18650272 MS.gene78932:intron 25.0%
! TATACCTGAAGACAATTATA+TGG - chr5.3:18651475-18651494 MS.gene78932:intron 25.0%
! TATGATAAATTCATAGCAAG+TGG + chr5.3:18649823-18649842 None:intergenic 25.0%
! TATTTAACAATTTGTCCATC+AGG + chr5.3:18651041-18651060 None:intergenic 25.0%
! TCCTATTATCCTCTTAAAAA+AGG + chr5.3:18649789-18649808 None:intergenic 25.0%
! TTTGATCTATGATTATACTG+TGG - chr5.3:18648408-18648427 MS.gene78932:CDS 25.0%
!! AGTGTTTAATTTACTTTGTG+GGG - chr5.3:18648341-18648360 MS.gene78932:CDS 25.0%
!! GATTTTTGAACTGTTTGTTT+TGG - chr5.3:18648467-18648486 MS.gene78932:CDS 25.0%
!! GGTATATCAAGAATACTTTT+AGG + chr5.3:18651461-18651480 None:intergenic 25.0%
!! TCATAAGTTTTGCTCAAAAA+CGG + chr5.3:18648025-18648044 None:intergenic 25.0%
!! TTTTGTAAGAAGAATGATGA+AGG - chr5.3:18649401-18649420 MS.gene78932:intron 25.0%
!!! AACCCTGTTTGAAATTTTAT+AGG + chr5.3:18650533-18650552 None:intergenic 25.0%
!!! CTCACAATCATTTTTTTTTG+GGG - chr5.3:18648700-18648719 MS.gene78932:CDS 25.0%
!!! TCCTTTTTTAAGAGGATAAT+AGG - chr5.3:18649785-18649804 MS.gene78932:intron 25.0%
!!! TCGAAAGTTGTGTTTTTTTA+TGG - chr5.3:18650473-18650492 MS.gene78932:intron 25.0%
!!! TGTTTTGGTGAAATATAATG+AGG - chr5.3:18648482-18648501 MS.gene78932:CDS 25.0%
AAAATTTCAAACAGGGTTTC+AGG - chr5.3:18650535-18650554 MS.gene78932:intron 30.0%
AACAACAAAATGACAGCAAT+AGG - chr5.3:18650940-18650959 MS.gene78932:intron 30.0%
AACCCTGATAATTACTTGAT+TGG - chr5.3:18651146-18651165 MS.gene78932:intron 30.0%
AGTTGACAATAAAGAGATAG+TGG - chr5.3:18650162-18650181 MS.gene78932:intron 30.0%
ATCACATCACTATCAAATGT+GGG + chr5.3:18648801-18648820 None:intergenic 30.0%
ATCTGAATTGTGGTTATAAG+GGG - chr5.3:18648819-18648838 MS.gene78932:CDS 30.0%
ATGCCAATAACAAAATCAAC+TGG + chr5.3:18649907-18649926 None:intergenic 30.0%
ATTAAGGATGTGCAACAATA+TGG + chr5.3:18650398-18650417 None:intergenic 30.0%
CAATAAGCTATGTGTATCAA+TGG + chr5.3:18650093-18650112 None:intergenic 30.0%
CACCAATCAAGTAATTATCA+GGG + chr5.3:18651151-18651170 None:intergenic 30.0%
CATGACACTAAATGATAAAG+AGG + chr5.3:18648744-18648763 None:intergenic 30.0%
CCTAGTGAATTATTATGAAG+AGG - chr5.3:18649210-18649229 MS.gene78932:intron 30.0%
CCTCTTCATAATAATTCACT+AGG + chr5.3:18649213-18649232 None:intergenic 30.0%
CTCTTTATCATTTAGTGTCA+TGG - chr5.3:18648742-18648761 MS.gene78932:CDS 30.0%
GAAAGACAATCCAAATCAAT+GGG + chr5.3:18651551-18651570 None:intergenic 30.0%
GATAATTACTTGATTGGTGA+TGG - chr5.3:18651152-18651171 MS.gene78932:intron 30.0%
GATCTGAATTGTGGTTATAA+GGG - chr5.3:18648818-18648837 MS.gene78932:CDS 30.0%
GCTTAAAAGTAAGAATGCAA+CGG + chr5.3:18649660-18649679 None:intergenic 30.0%
GGATGTGTATATAACAACAT+AGG - chr5.3:18649522-18649541 MS.gene78932:intron 30.0%
GTTTCCTTCTTTCAAAAGAA+TGG - chr5.3:18648998-18649017 MS.gene78932:CDS 30.0%
TAAAATGAAAGAGATAGGGT+GGG - chr5.3:18648962-18648981 MS.gene78932:CDS 30.0%
TAGTATTACACACTCAATTC+TGG + chr5.3:18650354-18650373 None:intergenic 30.0%
TATAGGAAAAATAGTCAGGA+AGG + chr5.3:18650516-18650535 None:intergenic 30.0%
TCACCAATCAAGTAATTATC+AGG + chr5.3:18651152-18651171 None:intergenic 30.0%
TGAAAGACAATCCAAATCAA+TGG + chr5.3:18651552-18651571 None:intergenic 30.0%
TGATCTGAATTGTGGTTATA+AGG - chr5.3:18648817-18648836 MS.gene78932:CDS 30.0%
TGCCAATAACAAAATCAACT+GGG + chr5.3:18649906-18649925 None:intergenic 30.0%
TTAAAATGAAAGAGATAGGG+TGG - chr5.3:18648961-18648980 MS.gene78932:CDS 30.0%
TTATTGAAAGATTCTACACG+CGG + chr5.3:18651125-18651144 None:intergenic 30.0%
TTGTTATGCTTGAAGAACTT+CGG + chr5.3:18648148-18648167 None:intergenic 30.0%
TTTGAGCAAAACTTATGACA+TGG - chr5.3:18648027-18648046 MS.gene78932:CDS 30.0%
! ATGTTTTATCGAACCCATAA+AGG + chr5.3:18650298-18650317 None:intergenic 30.0%
! CTTCTTTCTCACTCTTTTAA+CGG - chr5.3:18648215-18648234 MS.gene78932:CDS 30.0%
! TTATACTGTGGATGTTGATT+TGG - chr5.3:18648420-18648439 MS.gene78932:CDS 30.0%
! TTTCTGGACATAAGACTTTT+GGG - chr5.3:18650212-18650231 MS.gene78932:intron 30.0%
!! AATTAACTGCTTTAGGAAGA+TGG - chr5.3:18649559-18649578 MS.gene78932:intron 30.0%
!! AGAATTATTTGCTATGAAGC+TGG - chr5.3:18649249-18649268 MS.gene78932:intron 30.0%
!! CTATCCATTCTTTTGAAAGA+AGG + chr5.3:18649005-18649024 None:intergenic 30.0%
!! GGATGTTGATTTGGTTTAAT+GGG - chr5.3:18648429-18648448 MS.gene78932:CDS 30.0%
!! TGGATGTTGATTTGGTTTAA+TGG - chr5.3:18648428-18648447 MS.gene78932:CDS 30.0%
!! TTTGCTGTTTCATTCATCAT+AGG + chr5.3:18651068-18651087 None:intergenic 30.0%
!! TTTGTTATTGGCATTCGTTA+AGG - chr5.3:18649913-18649932 MS.gene78932:intron 30.0%
!!! ACTACATTTTTCAAGAAACG+AGG + chr5.3:18649489-18649508 None:intergenic 30.0%
AAACAGCAAAAGCAATGCTA+AGG - chr5.3:18651078-18651097 MS.gene78932:intron 35.0%
AACATTGACGAAATATCCAG+AGG - chr5.3:18651656-18651675 MS.gene78932:CDS 35.0%
ACATTGACGAAATATCCAGA+GGG - chr5.3:18651657-18651676 MS.gene78932:CDS 35.0%
ACTTTCTTGGATTCAACTTC+TGG - chr5.3:18650062-18650081 MS.gene78932:intron 35.0%
AGCATCTGCAAATGTTATGA+AGG - chr5.3:18651352-18651371 MS.gene78932:intron 35.0%
ATAAATCCATCATCTGTCTC+GGG + chr5.3:18651503-18651522 None:intergenic 35.0%
ATAACATCTGCTTGAGAAGT+CGG + chr5.3:18651404-18651423 None:intergenic 35.0%
ATATCAGCACTCAATTTGGT+TGG - chr5.3:18650257-18650276 MS.gene78932:intron 35.0%
ATGTGCAACAATATGGCTAA+AGG + chr5.3:18650391-18650410 None:intergenic 35.0%
ATTCAATACGCCAAAATGGT+GGG - chr5.3:18649714-18649733 MS.gene78932:intron 35.0%
CAACAACAGTTTCGTTGTTT+GGG - chr5.3:18648093-18648112 MS.gene78932:CDS 35.0%
CATAAATCCATCATCTGTCT+CGG + chr5.3:18651504-18651523 None:intergenic 35.0%
GACTGGTATACATCCTTTAT+GGG - chr5.3:18650282-18650301 MS.gene78932:intron 35.0%
GATCACATCACTATCAAATG+TGG + chr5.3:18648802-18648821 None:intergenic 35.0%
GCTAAGGAAGATCATGAAAT+GGG - chr5.3:18651094-18651113 MS.gene78932:intron 35.0%
GTATGAACTTTGCAATGATG+TGG - chr5.3:18649581-18649600 MS.gene78932:intron 35.0%
GTTAAACTGATATGCAGAGA+AGG + chr5.3:18650010-18650029 None:intergenic 35.0%
TAACAATTTGTCCATCAGGA+GGG + chr5.3:18651037-18651056 None:intergenic 35.0%
TAGTGATGTGATCTGAATTG+TGG - chr5.3:18648809-18648828 MS.gene78932:CDS 35.0%
TATAATGAGGAGTGGAAAGA+TGG - chr5.3:18648495-18648514 MS.gene78932:CDS 35.0%
TATCAGCACTCAATTTGGTT+GGG - chr5.3:18650258-18650277 MS.gene78932:intron 35.0%
TCTGAATTGTGGTTATAAGG+GGG - chr5.3:18648820-18648839 MS.gene78932:CDS 35.0%
TCTGCAAATGTTATGAAGGA+TGG - chr5.3:18651356-18651375 MS.gene78932:intron 35.0%
TGACAAAGAAAGCTATTCTC+AGG - chr5.3:18649097-18649116 MS.gene78932:CDS 35.0%
TGACTGGTATACATCCTTTA+TGG - chr5.3:18650281-18650300 MS.gene78932:intron 35.0%
TGAGGTACAGATAGAATTTC+AGG + chr5.3:18651326-18651345 None:intergenic 35.0%
TGCTAAGGAAGATCATGAAA+TGG - chr5.3:18651093-18651112 MS.gene78932:intron 35.0%
TGGTGAAATATAATGAGGAG+TGG - chr5.3:18648487-18648506 MS.gene78932:CDS 35.0%
TGTTCAGGAAACTAGTAGAT+TGG + chr5.3:18649942-18649961 None:intergenic 35.0%
TTAACAATTTGTCCATCAGG+AGG + chr5.3:18651038-18651057 None:intergenic 35.0%
! ATACTTTTAGGCACAATCTC+TGG + chr5.3:18651449-18651468 None:intergenic 35.0%
! TAAGTTTTGCTCAAAAACGG+TGG + chr5.3:18648022-18648041 None:intergenic 35.0%
! TGGATCATTACCCATTGATT+TGG - chr5.3:18651538-18651557 MS.gene78932:CDS 35.0%
!! AGCCCAGTTGATTTTGTTAT+TGG - chr5.3:18649901-18649920 MS.gene78932:intron 35.0%
!! ATTTGCTATGAAGCTGGTAT+TGG - chr5.3:18649255-18649274 MS.gene78932:intron 35.0%
!! GCATGTTTTTATGTAGCATG+AGG - chr5.3:18649634-18649653 MS.gene78932:intron 35.0%
!! GTTTCTGGACATAAGACTTT+TGG - chr5.3:18650211-18650230 MS.gene78932:intron 35.0%
!! TGATTTGGTGTGGTTGAATT+AGG - chr5.3:18648870-18648889 MS.gene78932:CDS 35.0%
!!! AATTTCAGGTTTTTCTGCTG+AGG + chr5.3:18651312-18651331 None:intergenic 35.0%
!!! ATTTCAGGTTTTTCTGCTGA+GGG + chr5.3:18651311-18651330 None:intergenic 35.0%
!!! TGAGTGCTGATATTTTACTC+AGG + chr5.3:18650250-18650269 None:intergenic 35.0%
AAATCATCAATGTCTGCACC+GGG + chr5.3:18651575-18651594 None:intergenic 40.0%
AACAATTTGTCCATCAGGAG+GGG + chr5.3:18651036-18651055 None:intergenic 40.0%
AATTCTTCCCTCTTCAAACC+TGG - chr5.3:18650328-18650347 MS.gene78932:intron 40.0%
ACAAACTGAGCAAAGAAACC+AGG + chr5.3:18650918-18650937 None:intergenic 40.0%
ACCTCAAAATCCTCTGGATT+TGG + chr5.3:18651635-18651654 None:intergenic 40.0%
ACGCCTTCCATTAGAAATGT+CGG + chr5.3:18648541-18648560 None:intergenic 40.0%
ACTCAAATTCCAGTGTCAAC+AGG - chr5.3:18651269-18651288 MS.gene78932:intron 40.0%
ATGGACAGAGTTCATCAGTA+GGG - chr5.3:18650685-18650704 MS.gene78932:intron 40.0%
ATGTTGACCTCAAAATCCTC+TGG + chr5.3:18651641-18651660 None:intergenic 40.0%
CAAACTGAGCAAAGAAACCA+GGG + chr5.3:18650917-18650936 None:intergenic 40.0%
CAAATCATCAATGTCTGCAC+CGG + chr5.3:18651576-18651595 None:intergenic 40.0%
CAACAGATGCGATAGTTTCA+TGG - chr5.3:18648062-18648081 MS.gene78932:CDS 40.0%
CATCTAGTTGCTGACAATGT+AGG + chr5.3:18649059-18649078 None:intergenic 40.0%
CATTCAATACGCCAAAATGG+TGG - chr5.3:18649713-18649732 MS.gene78932:intron 40.0%
CCAAACAACGAAACTGTTGT+TGG + chr5.3:18648095-18648114 None:intergenic 40.0%
CCAACAACAGTTTCGTTGTT+TGG - chr5.3:18648092-18648111 MS.gene78932:CDS 40.0%
CGTTGGGAATTTGCAAATGA+GGG - chr5.3:18650573-18650592 MS.gene78932:intron 40.0%
CTACATTGTCAGCAACTAGA+TGG - chr5.3:18649057-18649076 MS.gene78932:CDS 40.0%
CTAGTTTCCTGAACACTCTT+GGG - chr5.3:18649947-18649966 MS.gene78932:intron 40.0%
CTCAAATTCCAGTGTCAACA+GGG - chr5.3:18651270-18651289 MS.gene78932:intron 40.0%
CTGCATTCAATACGCCAAAA+TGG - chr5.3:18649710-18649729 MS.gene78932:intron 40.0%
CTGTTGTTGAGTATGACCAT+GGG + chr5.3:18650652-18650671 None:intergenic 40.0%
GAAACTATCGCATCTGTTGA+AGG + chr5.3:18648061-18648080 None:intergenic 40.0%
GAGCAAAACTTATGACATGG+TGG - chr5.3:18648030-18648049 MS.gene78932:CDS 40.0%
GATCAACTAACAGAGCAGAT+GGG - chr5.3:18651731-18651750 MS.gene78932:CDS 40.0%
GATTTGGATTGTCTTTCACC+CGG - chr5.3:18651554-18651573 MS.gene78932:CDS 40.0%
GGAGCCATATAATTGTCTTC+AGG + chr5.3:18651482-18651501 None:intergenic 40.0%
GGTAATGATCCAAGTGAACT+CGG + chr5.3:18651530-18651549 None:intergenic 40.0%
GTGTAGAAGTCGGCAAATTT+GGG - chr5.3:18650712-18650731 MS.gene78932:intron 40.0%
TAACATCTGCTTGAGAAGTC+GGG + chr5.3:18651403-18651422 None:intergenic 40.0%
TAGTTGCTGACAATGTAGGA+GGG + chr5.3:18649055-18649074 None:intergenic 40.0%
TCAACTGAACCGTGAAAGTA+AGG - chr5.3:18648918-18648937 MS.gene78932:CDS 40.0%
TCGTTGGGAATTTGCAAATG+AGG - chr5.3:18650572-18650591 MS.gene78932:intron 40.0%
TGTGTAGAAGTCGGCAAATT+TGG - chr5.3:18650711-18650730 MS.gene78932:intron 40.0%
TTACTTTCACGGTTCAGTTG+AGG + chr5.3:18648919-18648938 None:intergenic 40.0%
TTGCAAATTCCCAACGATCT+GGG + chr5.3:18650569-18650588 None:intergenic 40.0%
TTTATGGATCCGAGTTCACT+TGG - chr5.3:18651518-18651537 MS.gene78932:CDS 40.0%
TTTCAAACAGGGTTTCAGGA+AGG - chr5.3:18650539-18650558 MS.gene78932:intron 40.0%
TTTGCAAATTCCCAACGATC+TGG + chr5.3:18650570-18650589 None:intergenic 40.0%
! AATCAACTGGGCTTTTCACA+AGG + chr5.3:18649894-18649913 None:intergenic 40.0%
! ACTAGTTTCCTGAACACTCT+TGG - chr5.3:18649946-18649965 MS.gene78932:intron 40.0%
! ATGGTTTTCTTCGAGTGGAA+TGG - chr5.3:18648761-18648780 MS.gene78932:CDS 40.0%
! CTGAAGTCAACAAAAAGCGT+CGG - chr5.3:18650970-18650989 MS.gene78932:intron 40.0%
! GTGTTGCTCAATTTATCCTC+AGG - chr5.3:18650184-18650203 MS.gene78932:intron 40.0%
! TCCAAATCCAGAGGATTTTG+AGG - chr5.3:18651631-18651650 MS.gene78932:CDS 40.0%
! TCTGGTACTGAAGGTATATC+AGG + chr5.3:18651431-18651450 None:intergenic 40.0%
! TGCAAATGAGGGCTTTTTGA+GGG - chr5.3:18650584-18650603 MS.gene78932:intron 40.0%
! TTGCAAATGAGGGCTTTTTG+AGG - chr5.3:18650583-18650602 MS.gene78932:intron 40.0%
! TTTCTAATGGAAGGCGTATC+CGG - chr5.3:18648544-18648563 MS.gene78932:CDS 40.0%
!! CGAGACAGATGATGGATTTA+TGG - chr5.3:18651502-18651521 MS.gene78932:intron 40.0%
!! TGGACATAAGACTTTTGGGA+TGG - chr5.3:18650216-18650235 MS.gene78932:intron 40.0%
!!! TTTCAGGTTTTTCTGCTGAG+GGG + chr5.3:18651310-18651329 None:intergenic 40.0%
AAAAGGTCCCTAGCGAATTC+GGG + chr5.3:18648124-18648143 None:intergenic 45.0%
AATTCTGGCCAGGTTTGAAG+AGG + chr5.3:18650339-18650358 None:intergenic 45.0%
ACACTGAACAAGACAAGGAC+AGG + chr5.3:18648655-18648674 None:intergenic 45.0%
ACTAAAGCTCCTGCAAATGC+AGG + chr5.3:18649754-18649773 None:intergenic 45.0%
ACTCAATTTGGTTGGGTGAC+TGG - chr5.3:18650265-18650284 MS.gene78932:intron 45.0%
ACTGATGAACTCTGTCCATG+CGG + chr5.3:18650684-18650703 None:intergenic 45.0%
AGCACCACCGACATTTCTAA+TGG - chr5.3:18648531-18648550 MS.gene78932:CDS 45.0%
ATCCGGTATCTGACATGTGT+CGG - chr5.3:18648561-18648580 MS.gene78932:CDS 45.0%
ATTCTGGCCAGGTTTGAAGA+GGG + chr5.3:18650338-18650357 None:intergenic 45.0%
CAAAAGGTCCCTAGCGAATT+CGG + chr5.3:18648125-18648144 None:intergenic 45.0%
CAAATTTGGGCTTGAGGAAG+AGG - chr5.3:18650725-18650744 MS.gene78932:intron 45.0%
CAACTAGATGGAGCAGAAGA+GGG - chr5.3:18649069-18649088 MS.gene78932:CDS 45.0%
CACTGAACAAGACAAGGACA+GGG + chr5.3:18648654-18648673 None:intergenic 45.0%
CACTGACACTGAACAAGACA+AGG + chr5.3:18648660-18648679 None:intergenic 45.0%
CATGGACAGAGTTCATCAGT+AGG - chr5.3:18650684-18650703 MS.gene78932:intron 45.0%
CCACACCAAATCAGTGTGTA+CGG + chr5.3:18648863-18648882 None:intergenic 45.0%
CCACCGACATTTCTAATGGA+AGG - chr5.3:18648535-18648554 MS.gene78932:CDS 45.0%
CCATGGTCATACTCAACAAC+AGG - chr5.3:18650650-18650669 MS.gene78932:intron 45.0%
CCTCTTAAAAAAGGACAGCC+CGG + chr5.3:18649780-18649799 None:intergenic 45.0%
CCTGTTGTTGAGTATGACCA+TGG + chr5.3:18650653-18650672 None:intergenic 45.0%
CCTTCCATTAGAAATGTCGG+TGG + chr5.3:18648538-18648557 None:intergenic 45.0%
CGAAATATCCAGAGGGAATG+AGG - chr5.3:18651664-18651683 MS.gene78932:CDS 45.0%
CTAGTTGCTGACAATGTAGG+AGG + chr5.3:18649056-18649075 None:intergenic 45.0%
CTGCTCTGTTAGTTGATCCA+GGG + chr5.3:18651729-18651748 None:intergenic 45.0%
GCTTGAAGAACTTCGGCAAA+AGG + chr5.3:18648141-18648160 None:intergenic 45.0%
GGATCAACTAACAGAGCAGA+TGG - chr5.3:18651730-18651749 MS.gene78932:CDS 45.0%
GTTCAGTGTCAGTGCTTCAT+AGG - chr5.3:18648666-18648685 MS.gene78932:CDS 45.0%
TACTTCACCATCCAGTGCAA+TGG - chr5.3:18651175-18651194 MS.gene78932:intron 45.0%
TCTGCAAACTCCAAATCCAG+AGG - chr5.3:18651622-18651641 MS.gene78932:CDS 45.0%
TCTGCTCTGTTAGTTGATCC+AGG + chr5.3:18651730-18651749 None:intergenic 45.0%
TGAGTAGACTGCACTGAAGA+TGG + chr5.3:18651254-18651273 None:intergenic 45.0%
TGCTCTGTTAGTTGATCCAG+GGG + chr5.3:18651728-18651747 None:intergenic 45.0%
TGGACAGAGTTCATCAGTAG+GGG - chr5.3:18650686-18650705 MS.gene78932:intron 45.0%
TTACACACTCAATTCTGGCC+AGG + chr5.3:18650349-18650368 None:intergenic 45.0%
TTATCCTCAGGCTCAGTTTC+TGG - chr5.3:18650196-18650215 MS.gene78932:intron 45.0%
TTCTCATGCAAGAGCTTGTG+AGG - chr5.3:18650775-18650794 MS.gene78932:intron 45.0%
TTCTTCGAGTGGAATGGTGA+CGG - chr5.3:18648767-18648786 MS.gene78932:CDS 45.0%
! ACAGTAGTAGCTCTACAAGC+TGG - chr5.3:18651198-18651217 MS.gene78932:intron 45.0%
! GTGTCATGGTTTTCTTCGAG+TGG - chr5.3:18648756-18648775 MS.gene78932:CDS 45.0%
! GTTTTGCTCAAAAACGGTGG+CGG + chr5.3:18648019-18648038 None:intergenic 45.0%
! TAGCTCTACAAGCTGGAACT+CGG - chr5.3:18651205-18651224 MS.gene78932:intron 45.0%
!! AAAGAAACCAGGGCTTTGGA+CGG + chr5.3:18650907-18650926 None:intergenic 45.0%
!! AAATGTCGGTGGTGCTACAA+AGG + chr5.3:18648527-18648546 None:intergenic 45.0%
!! AATGTCGGTGGTGCTACAAA+GGG + chr5.3:18648526-18648545 None:intergenic 45.0%
!! GCAAATGAGGGCTTTTTGAG+GGG - chr5.3:18650585-18650604 MS.gene78932:intron 45.0%
!! TTGTCCCAGCCATTTTCTGT+TGG + chr5.3:18651695-18651714 None:intergenic 45.0%
AAACGTGTCCCTCGCAATAC+AGG + chr5.3:18649282-18649301 None:intergenic 50.0%
AACGTGTCCCTCGCAATACA+GGG + chr5.3:18649281-18649300 None:intergenic 50.0%
ACAATGGTTCAGCGCCTTCA+AGG - chr5.3:18650837-18650856 MS.gene78932:intron 50.0%
AGCTCTACAAGCTGGAACTC+GGG - chr5.3:18651206-18651225 MS.gene78932:intron 50.0%
AGGACAGGGTACATCAACGA+TGG + chr5.3:18648640-18648659 None:intergenic 50.0%
AGTCGAAGAAAACCTGCCCA+TGG - chr5.3:18650633-18650652 MS.gene78932:intron 50.0%
AGTCGGCAAATTTGGGCTTG+AGG - chr5.3:18650719-18650738 MS.gene78932:intron 50.0%
ATGTCCAGAAACTGAGCCTG+AGG + chr5.3:18650203-18650222 None:intergenic 50.0%
CAAATCAGTGTGTACGGCGA+AGG + chr5.3:18648857-18648876 None:intergenic 50.0%
CACCGACACATGTCAGATAC+CGG + chr5.3:18648566-18648585 None:intergenic 50.0%
CAGCAGCAACAAACCACTGA+CGG - chr5.3:18650804-18650823 MS.gene78932:intron 50.0%
CTACTGTCCATTGCACTGGA+TGG + chr5.3:18651185-18651204 None:intergenic 50.0%
CTCGGGAGTAACTCTTCAAG+AGG - chr5.3:18651223-18651242 MS.gene78932:intron 50.0%
GAAGGTTGACCCAGATCGTT+GGG - chr5.3:18650557-18650576 MS.gene78932:intron 50.0%
GAGCAAAGAAACCAGGGCTT+TGG + chr5.3:18650911-18650930 None:intergenic 50.0%
GAGGTGCAGCCAACAGAAAA+TGG - chr5.3:18651683-18651702 MS.gene78932:CDS 50.0%
GCAACTAGATGGAGCAGAAG+AGG - chr5.3:18649068-18649087 MS.gene78932:CDS 50.0%
GCAGCCAACAGAAAATGGCT+GGG - chr5.3:18651688-18651707 MS.gene78932:CDS 50.0%
GCTACTACTGTCCATTGCAC+TGG + chr5.3:18651189-18651208 None:intergenic 50.0%
GCTGAACCATTGTTTGCAGC+TGG + chr5.3:18650830-18650849 None:intergenic 50.0%
GGACAATAATACTCAGCCCC+TGG - chr5.3:18651709-18651728 MS.gene78932:CDS 50.0%
GGGTTCAACCACCCAAATAC+CGG - chr5.3:18647964-18647983 MS.gene78932:CDS 50.0%
GTAGACTGCACTGAAGATGG+AGG + chr5.3:18651251-18651270 None:intergenic 50.0%
GTCGTTGCTCCATTCCTTGA+AGG + chr5.3:18650854-18650873 None:intergenic 50.0%
TGCAGCCAACAGAAAATGGC+TGG - chr5.3:18651687-18651706 MS.gene78932:CDS 50.0%
TGTGGTTATAAGGGGGAGAC+AGG - chr5.3:18648827-18648846 MS.gene78932:CDS 50.0%
TGTTGAGTATGACCATGGGC+AGG + chr5.3:18650648-18650667 None:intergenic 50.0%
TTCCTGAACACTCTTGGGTG+TGG - chr5.3:18649952-18649971 MS.gene78932:intron 50.0%
TTTGCAGATGCTGCAGCTTG+AGG + chr5.3:18651344-18651363 None:intergenic 50.0%
! CTTCGCCGTACACACTGATT+TGG - chr5.3:18648855-18648874 MS.gene78932:CDS 50.0%
! GGCACAATCTCTGGTACTGA+AGG + chr5.3:18651440-18651459 None:intergenic 50.0%
! GTAGGGGCATGTGTAGAAGT+CGG - chr5.3:18650702-18650721 MS.gene78932:intron 50.0%
! GTATTGGCCCTGTATTGCGA+GGG - chr5.3:18649271-18649290 MS.gene78932:intron 50.0%
! TTGCAGGAGCTTTAGTGCAC+CGG - chr5.3:18649758-18649777 MS.gene78932:intron 50.0%
!! CCGTACACACTGATTTGGTG+TGG - chr5.3:18648860-18648879 MS.gene78932:CDS 50.0%
!! TTCCACACCCAAGAGTGTTC+AGG + chr5.3:18649957-18649976 None:intergenic 50.0%
!! TTCGCGTTTAGCATCGGTGT+CGG + chr5.3:18647992-18648011 None:intergenic 50.0%
!!! CCGGGCTGTCCTTTTTTAAG+AGG - chr5.3:18649777-18649796 MS.gene78932:intron 50.0%
ATGGCTCCCGAGACAGATGA+TGG - chr5.3:18651494-18651513 MS.gene78932:intron 55.0%
CAAATGCAGGATCCGGGAAG+GGG + chr5.3:18649741-18649760 None:intergenic 55.0%
CCAGTGTCAACAGGGACTCA+AGG - chr5.3:18651278-18651297 MS.gene78932:intron 55.0%
CCTTGAGTCCCTGTTGACAC+TGG + chr5.3:18651281-18651300 None:intergenic 55.0%
CTCCTGCAAATGCAGGATCC+GGG + chr5.3:18649747-18649766 None:intergenic 55.0%
GCAAATGCAGGATCCGGGAA+GGG + chr5.3:18649742-18649761 None:intergenic 55.0%
GCTCCTGCAAATGCAGGATC+CGG + chr5.3:18649748-18649767 None:intergenic 55.0%
GGAAGGTTGACCCAGATCGT+TGG - chr5.3:18650556-18650575 MS.gene78932:intron 55.0%
GGCTTGAGGAAGAGGTTGAG+AGG - chr5.3:18650733-18650752 MS.gene78932:intron 55.0%
GGTTCAGCGCCTTCAAGGAA+TGG - chr5.3:18650842-18650861 MS.gene78932:intron 55.0%
TGACGGCCAGCTGCAAACAA+TGG - chr5.3:18650821-18650840 MS.gene78932:intron 55.0%
TGCAAATGCAGGATCCGGGA+AGG + chr5.3:18649743-18649762 None:intergenic 55.0%
TTCCCGGATCCTGCATTTGC+AGG - chr5.3:18649742-18649761 MS.gene78932:intron 55.0%
! AAAATGGTGGGACCCCTTCC+CGG - chr5.3:18649726-18649745 MS.gene78932:intron 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG - chr5.3:18649759-18649778 MS.gene78932:intron 55.0%
!! CAAAAAGCGTCGGCTCAAGC+AGG - chr5.3:18650980-18650999 MS.gene78932:intron 55.0%
!! GGTATTGGCCCTGTATTGCG+AGG - chr5.3:18649270-18649289 MS.gene78932:intron 55.0%
AGGTCCCTAGCGAATTCGGG+TGG + chr5.3:18648121-18648140 None:intergenic 60.0%
CAACAGGCTCAGCAACCGCA+TGG - chr5.3:18650666-18650685 MS.gene78932:intron 60.0%
GAGCAAGCTACCCCTCCTGA+TGG - chr5.3:18651023-18651042 MS.gene78932:intron 60.0%
GGACCCACCCGAATTCGCTA+GGG - chr5.3:18648114-18648133 MS.gene78932:CDS 60.0%
GGCGCGTTCGCGTTTAGCAT+CGG + chr5.3:18647998-18648017 None:intergenic 60.0%
GGTCCCTAGCGAATTCGGGT+GGG + chr5.3:18648120-18648139 None:intergenic 60.0%
TGGCTGCACCTCATTCCCTC+TGG + chr5.3:18651675-18651694 None:intergenic 60.0%
TGTTTGCAGCTGGCCGTCAG+TGG + chr5.3:18650820-18650839 None:intergenic 60.0%
! GGGAAGGGGTCCCACCATTT+TGG + chr5.3:18649727-18649746 None:intergenic 60.0%
!! AAGCGTCGGCTCAAGCAGGA+TGG - chr5.3:18650984-18651003 MS.gene78932:intron 60.0%
!! ACCAGGGCTTTGGACGGCTT+TGG + chr5.3:18650901-18650920 None:intergenic 60.0%
!! GGCTTTGGACGGCTTTGGCA+AGG + chr5.3:18650896-18650915 None:intergenic 60.0%
!! TTTAGCATCGGTGTCGGCGC+CGG + chr5.3:18647986-18648005 None:intergenic 60.0%
GATGGAGCAAGCGGCGGAAG+TGG - chr5.3:18647932-18647951 MS.gene78932:CDS 65.0%
GCCAAAGCCGTCCAAAGCCC+TGG - chr5.3:18650897-18650916 MS.gene78932:intron 65.0%
GGGACCCACCCGAATTCGCT+AGG - chr5.3:18648113-18648132 MS.gene78932:CDS 65.0%
!! CGGTGTCGGCGCCGGTATTT+GGG + chr5.3:18647978-18647997 None:intergenic 65.0%
!! TCGGTGTCGGCGCCGGTATT+TGG + chr5.3:18647979-18647998 None:intergenic 65.0%
!! TGTCGGCGCCGGTATTTGGG+TGG + chr5.3:18647975-18647994 None:intergenic 65.0%
GGAGCAAGCGGCGGAAGTGG+CGG - chr5.3:18647935-18647954 MS.gene78932:CDS 70.0%
GCAAGCGGCGGAAGTGGCGG+CGG - chr5.3:18647938-18647957 MS.gene78932:CDS 75.0%
GGCGGAAGTGGCGGCGGAGA+GGG - chr5.3:18647944-18647963 MS.gene78932:CDS 75.0%
! CGGCGGAAGTGGCGGCGGAG+AGG - chr5.3:18647943-18647962 MS.gene78932:CDS 80.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 18647929 18651784 18647929 ID=MS.gene78932
chr5.3 mRNA 18647929 18651784 18647929 ID=MS.gene78932.t1;Parent=MS.gene78932
chr5.3 exon 18651512 18651784 18651512 ID=MS.gene78932.t1.exon1;Parent=MS.gene78932.t1
chr5.3 CDS 18651512 18651784 18651512 ID=cds.MS.gene78932.t1;Parent=MS.gene78932.t1
chr5.3 exon 18647929 18649164 18647929 ID=MS.gene78932.t1.exon2;Parent=MS.gene78932.t1
chr5.3 CDS 18647929 18649164 18647929 ID=cds.MS.gene78932.t1;Parent=MS.gene78932.t1
Gene Sequence

>MS.gene78932

ATGGATGGAGCAAGCGGCGGAAGTGGCGGCGGAGAGGGTTCAACCACCCAAATACCGGCGCCGACACCGATGCTAAACGCGAACGCGCCGCCACCGTTTTTGAGCAAAACTTATGACATGGTGGATGATCCTTCAACAGATGCGATAGTTTCATGGAGCGCAACCAACAACAGTTTCGTTGTTTGGGACCCACCCGAATTCGCTAGGGACCTTTTGCCGAAGTTCTTCAAGCATAACAATTTCTCAAGCTTTGTGAGACAGTTGAATACTTATGTGTGTTCTCTTTCTTCTTTCTCACTCTTTTAACGGTTATTCTATTTTGTTTGATTTGAGTTTTGGATTTGAAGTGATTAGTGATTTTTTCTGTGAATTAGTAACTCTTTTGATGATGTTTTAATTTGAATTAGAATAAAGTGTTTAATTTACTTTGTGGGGTTTTGATTTGAATATTTTGATGTTTTTGTTAATTTGTGGGTAAGTTTGATCTATGATTATACTGTGGATGTTGATTTGGTTTAATGGGTTGTATGCAAAATTTGATTTTTGAACTGTTTGTTTTGGTGAAATATAATGAGGAGTGGAAAGATGGTTTCACCCTTTGTAGCACCACCGACATTTCTAATGGAAGGCGTATCCGGTATCTGACATGTGTCGGTGTGACACTACACATGATTACATTCAATTAATTCACTTTTCTCAAAAAATTTACCATCGTTGATGTACCCTGTCCTTGTCTTGTTCAGTGTCAGTGCTTCATAGGTTTCACCCATTCTCACAATCATTTTTTTTTGGGGATTTGTTAAGCTCTAGTCCCTCTTTATCATTTAGTGTCATGGTTTTCTTCGAGTGGAATGGTGACGGTTGAGAGTCCCACATTTGATAGTGATGTGATCTGAATTGTGGTTATAAGGGGGAGACAGGACAACCTTCGCCGTACACACTGATTTGGTGTGGTTGAATTAGGTCTAAACGAAATTGTATGAGCAGCCTCAACTGAACCGTGAAAGTAAGGAAATTTACTTTAGCCTTCAATTAAAATGAAAGAGATAGGGTGGGAATTATTGTTTTTGTTTCCTTCTTTCAAAAGAATGGATAGACTGTAAAAATCAAATTTAATATTTTACCCTCCTACATTGTCAGCAACTAGATGGAGCAGAAGAGGGAAATTTGACAAAGAAAGCTATTCTCAGGTTAATCAGTTACTTGATTATGGTTTATTGATCCATGCATTGTATATTCAATATCAAAGGCGTATATATATTGTAGTATGCAAGGTATAAACCTAGTGAATTATTATGAAGAGGATTTTAGGGTTCTTAGAGAATTATTTGCTATGAAGCTGGTATTGGCCCTGTATTGCGAGGGACACGTTTATGTCTTCTGCTCAGCAACTCAAACAATTTATATGAAGCGAGAGCTTTCAAAGTACTGCTATCAGTATAATGACTATATTATGTCCTACATTTTTCAATTTTTGTAAGAAGAATGATGAAGGTGACTTATGATGCATAGACTCAAAATGAGTATCAGATACAGTATGTATTCAATTTGGTGATACCTCGTTTCTTGAAAAATGTAGTTTATGATACGATAGGATGTGTATATAACAACATAGGCTTCTGTGCTTTATAATTAACTGCTTTAGGAAGATGGTATGAACTTTGCAATGATGTGGAATTGATCAGTTACTATAGCTGCATAGAATGCATGTTTTTATGTAGCATGAGGCCGTTGCATTCTTACTTTTAAGCTAGTATTTTTCTTATAATTTGAGGATAAGACTGCATTCAATACGCCAAAATGGTGGGACCCCTTCCCGGATCCTGCATTTGCAGGAGCTTTAGTGCACCGGGCTGTCCTTTTTTAAGAGGATAATAGGAATGTAATGTAGCCACTTGCTATGAATTTATCATAATTGATTGTATCAAAACACTAGGACAGCAATAAGTTCTGTTCTGTTTTCCTTGTGAAAAGCCCAGTTGATTTTGTTATTGGCATTCGTTAAGGATTCCAATCTACTAGTTTCCTGAACACTCTTGGGTGTGGAATGAGTATTTTTTTTTTTTGTTAGTTTCTAACCTTCTCTGCATATCAGTTTAACACAAAACTTTAGCTTTTTGTTATGGAAAATAAACTTTCTTGGATTCAACTTCTGGCAAATCCATTGATACACATAGCTTATTGATGTGAGCTGCATTACTTCATATTCCATTTATCTTTTGAACCTTAACTAAGTTGACAATAAAGAGATAGTGGTGTTGCTCAATTTATCCTCAGGCTCAGTTTCTGGACATAAGACTTTTGGGATGGCATGTCTACCTGAGTAAAATATCAGCACTCAATTTGGTTGGGTGACTGGTATACATCCTTTATGGGTTCGATAAAACATCTGCATCTCAAATTCTTCCCTCTTCAAACCTGGCCAGAATTGAGTGTGTAATACTACAGCTTTCTTGTATCCTTTAGCCATATTGTTGCACATCCTTAATTGTCTTCTCTCTTTTTAGTTTGTTTGTGTATGAGTCTTTTTGTGTTTTATATAACTCGAAAGTTGTGTTTTTTTATGGTGTGTTTGATTTGACATCCTTCCTGACTATTTTTCCTATAAAATTTCAAACAGGGTTTCAGGAAGGTTGACCCAGATCGTTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCAATTGCTTAAGAGTATTAGTCGAAGAAAACCTGCCCATGGTCATACTCAACAACAGGCTCAGCAACCGCATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGCAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTTCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGACGGCCAGCTGCAAACAATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCCGTCCAAAGCCCTGGTTTCTTTGCTCAGTTTGTGCAACAACAAAATGACAGCAATAGGCGCATTACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGATGGTATTGCTGAAACAACAGAGCAAGCTACCCCTCCTGATGGACAAATTGTTAAATATCAACCTATGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCGCGTGTAGAATCTTTCAATAAAAACCCTGATAATTACTTGATTGGTGATGGTACTTCACCATCCAGTGCAATGGACAGTAGTAGCTCTACAAGCTGGAACTCGGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTACTCAAATTCCAGTGTCAACAGGGACTCAAGGACACATCCCCTCAGCAGAAAAACCTGAAATTCTATCTGTACCTCAAGCTGCAGCATCTGCAAATGTTATGAAGGATGGAACACATGCAGCATCGACTATCCCGACTTCTCAAGCAGATGTTATAATGCCTGATATACCTTCAGTACCAGAGATTGTGCCTAAAAGTATTCTTGATATACCTGAAGACAATTATATGGCTCCCGAGACAGATGATGGATTTATGGATCCGAGTTCACTTGGATCATTACCCATTGATTTGGATTGTCTTTCACCCGGTGCAGACATTGATGATTTGTTAAGCAATTCTATTTGGGATGATCTTCTGCAAACTCCAAATCCAGAGGATTTTGAGGTCAACATTGACGAAATATCCAGAGGGAATGAGGTGCAGCCAACAGAAAATGGCTGGGACAATAATACTCAGCCCCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGATGCCAAAAGAATTTAA
Protein sequence

>MS.gene78932.t1

MDGASGGSGGGEGSTTQIPAPTPMLNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQATPPDGQIVKYQPMMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSSSSTSWNSGVTLQEVPPSSVQSTQIPVSTGTQGHIPSAEKPEILSVPQAAASANVMKDGTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPEDNYMAPETDDGFMDPSSLGSLPIDLDCLSPGADIDDLLSNSIWDDLLQTPNPEDFEVNIDEISRGNEVQPTENGWDNNTQPLDQLTEQMGLLSSDAKRI