AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78946

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78946.t1 MTR_5g029470 96.774 403 8 4 1 399 1 402 0.0 782
MS.gene78946.t1 MTR_8g066310 56.683 404 115 16 1 396 1 352 2.36e-122 358
MS.gene78946.t1 MTR_3g064840 52.968 219 65 8 198 398 256 454 2.20e-51 179
MS.gene78946.t1 MTR_1g021520 46.032 189 72 7 210 398 120 278 6.14e-37 136
MS.gene78946.t1 MTR_6g071625 76.744 86 18 1 198 281 182 267 2.62e-36 136
MS.gene78946.t1 MTR_7g069660 45.763 118 45 3 175 290 45 145 1.01e-22 98.6
MS.gene78946.t1 MTR_1g112370 48.113 106 47 4 215 314 21 124 6.54e-21 93.2
MS.gene78946.t1 MTR_0223s0040 65.517 58 20 0 215 272 17 74 8.68e-21 92.0
MS.gene78946.t1 MTR_2g023580 59.722 72 28 1 209 280 49 119 5.41e-20 88.6
MS.gene78946.t1 MTR_2g084230 68.966 58 18 0 215 272 96 153 1.07e-19 89.4
MS.gene78946.t1 MTR_2g084230 68.966 58 18 0 215 272 96 153 1.64e-19 89.7
MS.gene78946.t1 MTR_8g086410 64.062 64 22 1 215 278 108 170 3.69e-19 89.0
MS.gene78946.t1 MTR_8g086410 64.062 64 22 1 215 278 110 172 3.70e-19 89.0
MS.gene78946.t1 MTR_2g016220 58.571 70 28 1 215 284 88 156 4.53e-18 85.5
MS.gene78946.t1 MTR_2g016220 58.571 70 28 1 215 284 88 156 4.64e-18 85.5
MS.gene78946.t1 MTR_7g098250 61.905 63 24 0 210 272 256 318 1.29e-17 84.7
MS.gene78946.t1 MTR_8g086410 64.286 56 20 0 215 270 110 165 2.75e-17 83.6
MS.gene78946.t1 MTR_1g080330 63.333 60 22 0 213 272 172 231 4.52e-17 81.3
MS.gene78946.t1 MTR_1g080330 63.333 60 22 0 213 272 172 231 4.97e-17 82.4
MS.gene78946.t1 MTR_5g027440 69.811 53 16 0 217 269 26 78 8.88e-17 80.5
MS.gene78946.t1 MTR_7g115530 64.286 56 20 0 217 272 219 274 8.91e-17 80.9
MS.gene78946.t1 MTR_3g450310 58.929 56 23 0 217 272 20 75 1.02e-16 79.0
MS.gene78946.t1 MTR_7g115530 64.286 56 20 0 217 272 219 274 1.74e-16 80.1
MS.gene78946.t1 MTR_7g115530 64.286 56 20 0 217 272 219 274 2.18e-16 80.9
MS.gene78946.t1 MTR_7g115530 64.286 56 20 0 217 272 219 274 2.42e-16 80.1
MS.gene78946.t1 MTR_7g093030 52.941 68 30 1 218 285 214 279 2.76e-16 79.3
MS.gene78946.t1 MTR_2g016220 55.405 74 28 2 215 284 88 160 3.65e-16 79.7
MS.gene78946.t1 MTR_7g093030 60.000 55 22 0 218 272 214 268 5.69e-16 79.3
MS.gene78946.t1 MTR_5g041350 44.872 78 43 0 217 294 16 93 1.69e-15 77.4
MS.gene78946.t1 MTR_7g088070 61.818 55 21 0 218 272 52 106 1.93e-15 76.6
MS.gene78946.t1 MTR_7g088070 61.818 55 21 0 218 272 52 106 1.98e-15 76.3
MS.gene78946.t1 MTR_1g053835 60.000 55 22 0 218 272 260 314 2.66e-15 77.4
MS.gene78946.t1 MTR_2g027860 50.649 77 36 1 218 294 51 125 2.76e-15 76.6
MS.gene78946.t1 MTR_1g090670 58.333 60 25 0 217 276 45 104 4.81e-15 75.5
MS.gene78946.t1 MTR_2g086450 58.929 56 23 0 217 272 46 101 5.14e-15 76.3
MS.gene78946.t1 MTR_6g444980 58.929 56 23 0 217 272 36 91 6.61e-15 75.9
MS.gene78946.t1 MTR_6g444980 58.929 56 23 0 217 272 36 91 7.51e-15 75.9
MS.gene78946.t1 MTR_2g027800 50.000 74 34 1 217 287 40 113 9.20e-15 75.1
MS.gene78946.t1 MTR_7g115530 63.462 52 19 0 217 268 219 270 1.91e-14 73.9
MS.gene78946.t1 MTR_6g032990 56.140 57 25 0 217 273 43 99 2.21e-14 74.7
MS.gene78946.t1 MTR_2g027800 62.264 53 20 0 217 269 40 92 2.45e-14 73.6
MS.gene78946.t1 MTR_7g115530 66.000 50 17 0 217 266 219 268 2.64e-14 73.2
MS.gene78946.t1 MTR_4g081710 54.386 57 26 0 217 273 18 74 9.70e-14 72.0
MS.gene78946.t1 MTR_1g053830 50.909 55 27 0 218 272 20 74 5.45e-12 62.4
MS.gene78946.t1 MTR_7g068600 55.172 58 23 1 218 272 15 72 7.79e-12 65.1
MS.gene78946.t1 MTR_1g053800 52.830 53 25 0 218 270 179 231 8.24e-12 66.2
MS.gene78946.t1 MTR_7g093010 39.535 86 49 1 218 303 215 297 1.42e-11 65.9
MS.gene78946.t1 MTR_2g450070 43.210 81 39 2 213 287 210 289 2.89e-11 65.5
MS.gene78946.t1 MTR_2g450070 43.210 81 39 2 213 287 210 289 2.96e-11 65.5
MS.gene78946.t1 MTR_4g086835 51.282 78 34 2 215 290 273 348 3.36e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78946.t1 AT1G32240 53.846 416 143 14 1 397 1 386 1.20e-100 304
MS.gene78946.t1 AT1G32240 53.243 370 128 11 1 353 1 342 5.53e-92 281
MS.gene78946.t1 AT4G17695 39.130 414 140 14 1 398 1 318 1.86e-61 201
MS.gene78946.t1 AT5G16560 41.528 301 119 8 141 398 112 398 5.68e-49 171
MS.gene78946.t1 AT1G32240 61.589 151 42 7 251 397 1 139 7.69e-39 136
MS.gene78946.t1 AT5G42630 80.000 75 15 0 211 285 100 174 1.88e-35 130
MS.gene78946.t1 AT5G42630 59.016 122 43 2 211 328 100 218 4.97e-35 130
MS.gene78946.t1 AT2G38300 55.000 80 35 1 209 288 48 126 5.22e-21 93.6
MS.gene78946.t1 AT2G02060 72.222 54 15 0 216 269 29 82 5.08e-20 89.4
MS.gene78946.t1 AT2G02060 72.222 54 15 0 216 269 29 82 5.08e-20 89.4
MS.gene78946.t1 AT1G14600 66.102 59 20 0 216 274 23 81 1.05e-19 88.2
MS.gene78946.t1 AT4G04605 65.517 58 20 0 215 272 13 70 1.22e-19 87.4
MS.gene78946.t1 AT5G45580 46.087 115 53 3 217 323 8 121 1.93e-19 87.8
MS.gene78946.t1 AT5G45580 46.087 115 53 3 217 323 24 137 3.72e-19 87.4
MS.gene78946.t1 AT2G40260 62.687 67 24 1 209 275 76 141 1.58e-18 87.0
MS.gene78946.t1 AT4G04580 59.322 59 24 0 217 275 15 73 4.83e-18 81.3
MS.gene78946.t1 AT2G42660 66.071 56 19 0 217 272 51 106 8.19e-18 82.8
MS.gene78946.t1 AT4G04555 53.425 73 31 2 200 272 1 70 6.56e-17 76.3
MS.gene78946.t1 AT4G28610 65.455 55 19 0 218 272 227 281 3.58e-16 80.1
MS.gene78946.t1 AT3G12730 62.500 56 21 0 217 272 24 79 4.73e-16 77.4
MS.gene78946.t1 AT5G29000 52.778 72 34 0 218 289 233 304 1.19e-15 77.8
MS.gene78946.t1 AT2G01060 63.636 55 20 0 218 272 17 71 1.68e-15 76.6
MS.gene78946.t1 AT3G04450 56.250 64 28 0 209 272 231 294 1.80e-15 77.0
MS.gene78946.t1 AT3G04450 54.286 70 31 1 204 272 185 254 2.82e-15 77.4
MS.gene78946.t1 AT3G04450 54.286 70 31 1 204 272 185 254 2.82e-15 77.4
MS.gene78946.t1 AT3G04450 54.286 70 31 1 204 272 225 294 3.06e-15 77.4
MS.gene78946.t1 AT3G24120 62.264 53 20 0 217 269 42 94 3.07e-15 76.3
MS.gene78946.t1 AT3G24120 62.264 53 20 0 217 269 42 94 3.08e-15 76.3
MS.gene78946.t1 AT5G29000 54.545 66 30 0 218 283 190 255 3.72e-15 76.6
MS.gene78946.t1 AT5G29000 54.545 66 30 0 218 283 190 255 3.72e-15 76.6
MS.gene78946.t1 AT5G29000 54.545 66 30 0 218 283 233 298 4.92e-15 76.6
MS.gene78946.t1 AT1G79430 58.929 56 23 0 217 272 35 90 5.19e-15 76.3
MS.gene78946.t1 AT4G13640 60.377 53 21 0 217 269 38 90 1.10e-14 74.7
MS.gene78946.t1 AT4G13640 60.377 53 21 0 217 269 38 90 1.15e-14 74.3
MS.gene78946.t1 AT5G06800 50.794 63 31 0 210 272 186 248 2.53e-14 73.2
MS.gene78946.t1 AT5G18240 55.357 56 25 0 217 272 46 101 4.74e-14 73.6
MS.gene78946.t1 AT5G18240 55.357 56 25 0 217 272 46 101 4.74e-14 73.6
MS.gene78946.t1 AT5G18240 55.357 56 25 0 217 272 46 101 4.78e-14 73.6
MS.gene78946.t1 AT3G04030 53.571 56 26 0 217 272 46 101 4.82e-14 73.6
MS.gene78946.t1 AT5G18240 55.357 56 25 0 217 272 46 101 5.10e-14 73.6
MS.gene78946.t1 AT5G18240 55.357 56 25 0 217 272 46 101 5.10e-14 73.6
MS.gene78946.t1 AT3G04030 53.571 56 26 0 217 272 46 101 5.69e-14 73.6
MS.gene78946.t1 AT3G13040 46.154 104 50 3 173 272 196 297 6.22e-14 73.6
MS.gene78946.t1 AT3G13040 46.154 104 50 3 173 272 196 297 6.22e-14 73.6
MS.gene78946.t1 AT3G13040 46.154 104 50 3 173 272 196 297 6.22e-14 73.6
MS.gene78946.t1 AT2G20400 63.636 55 20 0 218 272 233 287 6.73e-14 73.2
MS.gene78946.t1 AT2G20400 63.636 55 20 0 218 272 233 287 6.89e-14 73.2
MS.gene78946.t1 AT5G06800 56.364 55 24 0 218 272 194 248 9.34e-14 72.4
MS.gene78946.t1 AT5G06800 56.364 55 24 0 218 272 194 248 9.68e-14 72.4
MS.gene78946.t1 AT2G06020 55.738 61 27 0 218 278 88 148 1.65e-13 71.2
MS.gene78946.t1 AT1G69580 50.877 57 28 0 217 273 35 91 1.05e-12 68.9
MS.gene78946.t1 AT1G69580 50.877 57 28 0 217 273 35 91 1.08e-12 68.9
MS.gene78946.t1 AT3G04030 51.786 56 26 1 217 272 46 100 1.46e-11 65.9
MS.gene78946.t1 AT2G03500 53.448 58 27 0 212 269 229 286 3.67e-11 65.1

Find 83 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTATTTCCACTATTT+TGG 0.109662 5.3:-18428694 None:intergenic
TGATCTTCCTTGCTGCTTAA+TGG 0.145751 5.3:-18430939 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5.3:-18429434 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5.3:-18433440 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5.3:-18433449 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5.3:+18433436 MS.gene78946:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5.3:+18430975 MS.gene78946:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5.3:+18432133 MS.gene78946:CDS
AGGAAATGGATTTGGGGTTT+TGG 0.258801 5.3:+18428522 MS.gene78946:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5.3:+18428477 MS.gene78946:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5.3:+18433442 MS.gene78946:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5.3:-18428479 None:intergenic
GGTGGTGTTGTTGTGGTTGA+TGG 0.280213 5.3:-18428784 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5.3:+18429106 MS.gene78946:CDS
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5.3:-18428820 None:intergenic
CACAGAAGAGGAAATGGATT+TGG 0.299354 5.3:+18428514 MS.gene78946:CDS
ACAGAAGAGGAAATGGATTT+GGG 0.314344 5.3:+18428515 MS.gene78946:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5.3:+18429436 MS.gene78946:CDS
AATCATCTTCATATTCTTGA+TGG 0.324988 5.3:+18428920 MS.gene78946:CDS
GAAGATGAAGCATACTTTCA+TGG 0.330340 5.3:-18429132 None:intergenic
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5.3:+18429481 MS.gene78946:CDS
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5.3:-18433439 None:intergenic
TTTGAATCTAAAGGCTTTGT+TGG 0.343931 5.3:-18428632 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5.3:-18433424 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5.3:-18428808 None:intergenic
CTAATTTGCAAAGACAAATC+TGG 0.371942 5.3:-18428440 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5.3:-18433374 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5.3:-18428765 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5.3:-18428842 None:intergenic
TGAAGTTGAGGGAATGATAA+AGG 0.400321 5.3:-18428878 None:intergenic
CATCATCACTTCCAAAATAG+TGG 0.402204 5.3:+18428683 MS.gene78946:CDS
AACAAACACAGAAGAGGAAA+TGG 0.404086 5.3:+18428508 MS.gene78946:CDS
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5.3:+18430990 MS.gene78946:CDS
AGTTCATCTACAAACCTATC+AGG 0.408228 5.3:+18433410 MS.gene78946:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5.3:-18428805 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5.3:-18432136 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5.3:+18430857 MS.gene78946:CDS
TTTGATGAAAAGATTGATAA+GGG 0.432631 5.3:-18428724 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5.3:+18432109 MS.gene78946:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5.3:-18428995 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5.3:+18428565 MS.gene78946:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5.3:+18430968 MS.gene78946:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5.3:-18428766 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5.3:-18428994 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5.3:-18428764 None:intergenic
TTGTTGTTAGAAATAGTAGA+AGG 0.465912 5.3:-18428956 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5.3:+18428809 MS.gene78946:CDS
TGAGGGAATGATAAAGGAGG+AGG 0.480787 5.3:-18428872 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5.3:-18428889 None:intergenic
CTTTGGTGGTGGTGTTGTTG+TGG 0.484341 5.3:-18428791 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.484429 5.3:-18429067 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5.3:+18432101 MS.gene78946:intron
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5.3:-18433472 None:intergenic
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5.3:+18430697 MS.gene78946:CDS
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5.3:+18430958 MS.gene78946:CDS
TGATTATGATTATGAAGTTG+AGG 0.522631 5.3:-18428890 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5.3:+18433455 MS.gene78946:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5.3:-18428770 None:intergenic
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5.3:+18428999 MS.gene78946:CDS
GAGGGAATGATAAAGGAGGA+GGG 0.550824 5.3:-18428871 None:intergenic
CTTGGCTTAAGCTTTGGTGG+TGG 0.552991 5.3:-18428802 None:intergenic
TGAGAGCTCCAAGGATGCGT+TGG 0.554044 5.3:+18429059 MS.gene78946:CDS
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5.3:+18429109 MS.gene78946:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5.3:-18428431 None:intergenic
TGGAAACATGCAATCTCTTG+AGG 0.562071 5.3:+18432153 MS.gene78946:CDS
GAGAACAACAAACACAGAAG+AGG 0.568948 5.3:+18428502 MS.gene78946:CDS
GGAAGTGATGATGATGAATG+AGG 0.577883 5.3:-18428673 None:intergenic
TCTTGAACTAATGGATGTGA+AGG 0.578980 5.3:+18429445 MS.gene78946:CDS
GTGTTGTTGTTTGAATCTAA+AGG 0.580441 5.3:-18428641 None:intergenic
TTGTTGGATTTGAAAGAGAG+AGG 0.584330 5.3:-18428616 None:intergenic
CAGAAGAGGAAATGGATTTG+GGG 0.591791 5.3:+18428516 MS.gene78946:CDS
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5.3:-18433471 None:intergenic
TTGGTTACATGGTAAACCAA+AGG 0.600087 5.3:+18432120 MS.gene78946:CDS
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5.3:-18433478 None:intergenic
AGTTGAGGGAATGATAAAGG+AGG 0.618652 5.3:-18428875 None:intergenic
CAATCTGATGTATACGACAA+TGG 0.619241 5.3:+18430848 MS.gene78946:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5.3:+18430685 MS.gene78946:CDS
TTAAATCCAGATGTATCGGA+CGG 0.625352 5.3:+18430663 MS.gene78946:intron
AAAGAAGCATGAGAGCTCCA+AGG 0.647856 5.3:+18429050 MS.gene78946:CDS
GATTTATCCATTAAGCAGCA+AGG 0.648761 5.3:+18430932 MS.gene78946:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5.3:+18433386 MS.gene78946:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5.3:-18428763 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5.3:-18433482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATTATCATATAGTA+TGG - chr5.3:18432588-18432607 None:intergenic 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG + chr5.3:18433228-18433247 MS.gene78946:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG + chr5.3:18430578-18430597 MS.gene78946:intron 10.0%
!!! CTTAAAAATATATTTCTTTT+TGG + chr5.3:18429167-18429186 MS.gene78946:intron 10.0%
!!! TTTTACTTCAATTTAATTAT+GGG - chr5.3:18430245-18430264 None:intergenic 10.0%
!!! TTTTTACTTCAATTTAATTA+TGG - chr5.3:18430246-18430265 None:intergenic 10.0%
!! AAAAAACAAAACAAAATGAT+AGG + chr5.3:18430282-18430301 MS.gene78946:intron 15.0%
!! AAAAGCAAATAACAATAAAT+TGG - chr5.3:18433338-18433357 None:intergenic 15.0%
!! AAAGAATATTTATATGAATG+AGG - chr5.3:18432770-18432789 None:intergenic 15.0%
!! AAGAATATTTATATGAATGA+GGG - chr5.3:18432769-18432788 None:intergenic 15.0%
!! AGAAAAAAGAAAGAAAAAAA+AGG + chr5.3:18432354-18432373 MS.gene78946:intron 15.0%
!! AGTATAAAAAAAAGGATTAT+AGG - chr5.3:18431043-18431062 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG + chr5.3:18431921-18431940 MS.gene78946:intron 15.0%
!! ATATTAATTTCAAATTCCAA+TGG + chr5.3:18429710-18429729 MS.gene78946:intron 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG - chr5.3:18429235-18429254 None:intergenic 15.0%
!! TACAAAAAAAAAATGGAAAA+GGG - chr5.3:18433287-18433306 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG - chr5.3:18431916-18431935 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG - chr5.3:18429236-18429255 None:intergenic 15.0%
!! TTACAAAAAAAAAATGGAAA+AGG - chr5.3:18433288-18433307 None:intergenic 15.0%
!! TTCTATCATATATTAATTGT+TGG + chr5.3:18430736-18430755 MS.gene78946:intron 15.0%
!! TTTATATACTTATACATTAG+AGG + chr5.3:18429670-18429689 MS.gene78946:intron 15.0%
!!! AATAACTTTTTCAAAACAAA+AGG - chr5.3:18432213-18432232 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG - chr5.3:18431731-18431750 None:intergenic 15.0%
!!! CATTTTATATTCTTTTAAGT+TGG - chr5.3:18429859-18429878 None:intergenic 15.0%
!!! GAAATATATTTTTAAGAAAG+TGG - chr5.3:18429163-18429182 None:intergenic 15.0%
!!! GTTTTATATACACAAATAAT+TGG + chr5.3:18432667-18432686 MS.gene78946:intron 15.0%
!!! TTATATAGTCATTTTCAATA+TGG - chr5.3:18432513-18432532 None:intergenic 15.0%
!! AAAAAGAAAAGCAAAACTTA+AGG - chr5.3:18432045-18432064 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+TGG - chr5.3:18433109-18433128 None:intergenic 20.0%
!! AAAGTAAAAAGCTGTTTATT+AGG - chr5.3:18429822-18429841 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG + chr5.3:18429268-18429287 MS.gene78946:intron 20.0%
!! AATTAATAACTCTTAACTAG+AGG - chr5.3:18432488-18432507 None:intergenic 20.0%
!! ATATTATTATTAGACCATCA+TGG - chr5.3:18431606-18431625 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG - chr5.3:18432890-18432909 None:intergenic 20.0%
!! GTAATTAAGCTAGAATAAAA+AGG - chr5.3:18429211-18429230 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG - chr5.3:18431856-18431875 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG - chr5.3:18432891-18432910 None:intergenic 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG - chr5.3:18429511-18429530 None:intergenic 20.0%
!! TTTGATGAAAAGATTGATAA+GGG - chr5.3:18428727-18428746 None:intergenic 20.0%
!!! AATTTTAAATCCAGATGTAT+CGG + chr5.3:18430659-18430678 MS.gene78946:intron 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG + chr5.3:18431984-18432003 MS.gene78946:intron 20.0%
!!! CATTATTATTTCCACTATTT+TGG - chr5.3:18428697-18428716 None:intergenic 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG - chr5.3:18431986-18432005 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG - chr5.3:18431742-18431761 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG - chr5.3:18429979-18429998 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG - chr5.3:18429855-18429874 None:intergenic 20.0%
!!! TTTTATAATATGCATATGCA+TGG - chr5.3:18430419-18430438 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGATA+AGG - chr5.3:18428728-18428747 None:intergenic 20.0%
! AAAATCAGTTCTTGAACTAA+TGG + chr5.3:18429436-18429455 MS.gene78946:CDS 25.0%
! AAACTCTTTATCATCATCAA+TGG + chr5.3:18428565-18428584 MS.gene78946:CDS 25.0%
! AAAGAAACCTAATTTGGATT+TGG + chr5.3:18433442-18433461 MS.gene78946:CDS 25.0%
! AAATCCAAATTAGGTTTCTT+TGG - chr5.3:18433443-18433462 None:intergenic 25.0%
! AAATTACTGTGAGTATGAAA+GGG - chr5.3:18432852-18432871 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG + chr5.3:18432460-18432479 MS.gene78946:intron 25.0%
! AATCAAGATAAGGAATGTTA+TGG + chr5.3:18430968-18430987 MS.gene78946:CDS 25.0%
! AATCATCTTCATATTCTTGA+TGG + chr5.3:18428920-18428939 MS.gene78946:CDS 25.0%
! AATCCAAATTAGGTTTCTTT+GGG - chr5.3:18433442-18433461 None:intergenic 25.0%
! AGTATATAGTATTAGAGAAC+AGG - chr5.3:18432829-18432848 None:intergenic 25.0%
! ATCAAGTGTTAATCAAGATA+AGG + chr5.3:18430958-18430977 MS.gene78946:CDS 25.0%
! ATTAAGCTAGAATAAAAAGG+AGG - chr5.3:18429208-18429227 None:intergenic 25.0%
! CAAGACAATTAGAAGAAAAA+AGG + chr5.3:18429267-18429286 MS.gene78946:intron 25.0%
! GATTATGATTATGAAGTTGA+GGG - chr5.3:18428892-18428911 None:intergenic 25.0%
! GGTTTCAAGATTTCTAATTA+TGG - chr5.3:18431857-18431876 None:intergenic 25.0%
! TAAATTACTGTGAGTATGAA+AGG - chr5.3:18432853-18432872 None:intergenic 25.0%
! TACCAAGTACCAAAAAAAAT+GGG + chr5.3:18430040-18430059 MS.gene78946:intron 25.0%
! TAGAATAAAAAGGAGGATTA+AGG - chr5.3:18429201-18429220 None:intergenic 25.0%
! TATTTATATGAATGAGGGAA+AGG - chr5.3:18432764-18432783 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG + chr5.3:18432432-18432451 MS.gene78946:intron 25.0%
! TCATTTGACTCAATTATCAA+TGG + chr5.3:18432556-18432575 MS.gene78946:intron 25.0%
! TGATTATGATTATGAAGTTG+AGG - chr5.3:18428893-18428912 None:intergenic 25.0%
! TGTAATTGGTAAATGTGAAA+AGG - chr5.3:18432430-18432449 None:intergenic 25.0%
!! ATTGATAATTGAGTCAAATG+AGG - chr5.3:18432557-18432576 None:intergenic 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG - chr5.3:18432444-18432463 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG + chr5.3:18432000-18432019 MS.gene78946:intron 25.0%
!! TCATTTAAAACAACATCGTT+AGG - chr5.3:18431273-18431292 None:intergenic 25.0%
!! TTGTTGTTAGAAATAGTAGA+AGG - chr5.3:18428959-18428978 None:intergenic 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG + chr5.3:18432278-18432297 MS.gene78946:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG + chr5.3:18432047-18432066 MS.gene78946:intron 25.0%
!!! ATATAATATAGGAGCATTCA+TGG - chr5.3:18431905-18431924 None:intergenic 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG - chr5.3:18430448-18430467 None:intergenic 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG - chr5.3:18429437-18429456 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG - chr5.3:18432190-18432209 None:intergenic 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG - chr5.3:18432189-18432208 None:intergenic 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG + chr5.3:18433343-18433362 MS.gene78946:intron 25.0%
AAAACAAAAGGCTTAACCTT+TGG - chr5.3:18432201-18432220 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG - chr5.3:18432651-18432670 None:intergenic 30.0%
AACCAACAACAACAAGTAAT+TGG + chr5.3:18428477-18428496 MS.gene78946:CDS 30.0%
AACGAGATATAGTTGCAATA+TGG - chr5.3:18431239-18431258 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG - chr5.3:18430329-18430348 None:intergenic 30.0%
AATAGAATGCACAAAATTCG+AGG - chr5.3:18430123-18430142 None:intergenic 30.0%
AATCCTATATAAATGCTGTG+TGG + chr5.3:18432965-18432984 MS.gene78946:intron 30.0%
AATTCAATGTGTTGTCGAAT+AGG - chr5.3:18433144-18433163 None:intergenic 30.0%
AGAAATATTCTCTCTGTGTT+TGG + chr5.3:18432082-18432101 MS.gene78946:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG + chr5.3:18430975-18430994 MS.gene78946:CDS 30.0%
ATAGAATGCACAAAATTCGA+GGG - chr5.3:18430122-18430141 None:intergenic 30.0%
ATAGAGATATCTCTTTCCTT+AGG + chr5.3:18431749-18431768 MS.gene78946:intron 30.0%
ATCAAAGCTTGAGATTGAAA+AGG - chr5.3:18428998-18429017 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG + chr5.3:18432246-18432265 MS.gene78946:intron 30.0%
CAACAAAAAGTTGCTATGTT+AGG + chr5.3:18430181-18430200 MS.gene78946:intron 30.0%
CAAGTAACAACTTTACTTAG+AGG + chr5.3:18430503-18430522 MS.gene78946:intron 30.0%
CACTAAGTTTCTCATTTGTT+GGG - chr5.3:18431812-18431831 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG - chr5.3:18432942-18432961 None:intergenic 30.0%
GTACCAAGTACCAAAAAAAA+TGG + chr5.3:18430039-18430058 MS.gene78946:intron 30.0%
GTGAATTCCAAATCCAAATT+AGG - chr5.3:18433452-18433471 None:intergenic 30.0%
TAAACAGGAATTCCTCTAAT+AGG - chr5.3:18428845-18428864 None:intergenic 30.0%
TATACTCTCTCAAAATCCAA+CGG - chr5.3:18431164-18431183 None:intergenic 30.0%
TATGATTAAAGGGCTAAAAG+AGG - chr5.3:18432880-18432899 None:intergenic 30.0%
TATTGCCATGCACATTATTA+TGG + chr5.3:18432322-18432341 MS.gene78946:intron 30.0%
TCAAAGCTTGAGATTGAAAA+GGG - chr5.3:18428997-18429016 None:intergenic 30.0%
TGGTAGAGAAAGGAAAAAAA+AGG - chr5.3:18430364-18430383 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG - chr5.3:18431878-18431897 None:intergenic 30.0%
TTCCTTATCTTATGCCTTAA+GGG + chr5.3:18430204-18430223 MS.gene78946:intron 30.0%
TTCTAATTATGGGACTACAA+GGG - chr5.3:18431846-18431865 None:intergenic 30.0%
TTCTTTAGTCAGATTGAAGA+TGG + chr5.3:18429592-18429611 MS.gene78946:intron 30.0%
TTGTCCTTCACAAATTCAAA+TGG + chr5.3:18432394-18432413 MS.gene78946:intron 30.0%
TTTCCAATAGAATCAACCTT+TGG - chr5.3:18432139-18432158 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG - chr5.3:18431847-18431866 None:intergenic 30.0%
! AAACCAAAGGTTGATTCTAT+TGG + chr5.3:18432133-18432152 MS.gene78946:CDS 30.0%
! ATCGATTTCTGAAAACAAGT+AGG + chr5.3:18429900-18429919 MS.gene78946:intron 30.0%
! CTAATTTGCAAAGACAAATC+TGG - chr5.3:18428443-18428462 None:intergenic 30.0%
! TATTAGACCATCATGGATTT+TGG - chr5.3:18431599-18431618 None:intergenic 30.0%
! TTTACTTCCTTTTGAACAAC+TGG - chr5.3:18431639-18431658 None:intergenic 30.0%
! TTTGAATCTAAAGGCTTTGT+TGG - chr5.3:18428635-18428654 None:intergenic 30.0%
!! GAGGGAATATTTCTACTTTT+GGG - chr5.3:18430104-18430123 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG - chr5.3:18432191-18432210 None:intergenic 30.0%
!! GTGTTGTTGTTTGAATCTAA+AGG - chr5.3:18428644-18428663 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG + chr5.3:18429405-18429424 MS.gene78946:intron 30.0%
!! TAACCTTTGGAATATAAAGG+GGG - chr5.3:18432188-18432207 None:intergenic 30.0%
!! TACAGAAGCATTTATGGTTA+TGG - chr5.3:18430442-18430461 None:intergenic 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG + chr5.3:18429406-18429425 MS.gene78946:intron 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG - chr5.3:18428482-18428501 None:intergenic 30.0%
!!! GTTGTTGTTGGTTTTGTATT+TGG - chr5.3:18428470-18428489 None:intergenic 30.0%
!!! TTAGCAAGACCCATTTTTTT+TGG - chr5.3:18430052-18430071 None:intergenic 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG + chr5.3:18433349-18433368 MS.gene78946:intron 30.0%
!!! TTTTTTTCCTTTCTCTACCA+TGG + chr5.3:18430364-18430383 MS.gene78946:intron 30.0%
AAAACAACATCGTTAGGCTT+TGG - chr5.3:18431267-18431286 None:intergenic 35.0%
AAACATTAGGCTCTTGTATG+GGG + chr5.3:18431786-18431805 MS.gene78946:intron 35.0%
AAATGAGGCAGGTTTAATAG+GGG - chr5.3:18432542-18432561 None:intergenic 35.0%
AACAAACACAGAAGAGGAAA+TGG + chr5.3:18428508-18428527 MS.gene78946:CDS 35.0%
AAGATGGTACGATTCTGATT+GGG + chr5.3:18429608-18429627 MS.gene78946:intron 35.0%
AAGCCCAAAGAAACCTAATT+TGG + chr5.3:18433436-18433455 MS.gene78946:CDS 35.0%
AGCATTCATGGAAGTTTCAA+AGG - chr5.3:18431893-18431912 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG + chr5.3:18433386-18433405 MS.gene78946:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG + chr5.3:18433410-18433429 MS.gene78946:CDS 35.0%
ATAATTGAGTCAAATGAGGC+AGG - chr5.3:18432553-18432572 None:intergenic 35.0%
ATTCCCCCTTTATATTCCAA+AGG + chr5.3:18432182-18432201 MS.gene78946:intron 35.0%
ATTCCTATATAACCACTGCA+TGG - chr5.3:18433068-18433087 None:intergenic 35.0%
ATTGAGAGAAACCCTTTCTA+AGG - chr5.3:18429739-18429758 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG + chr5.3:18431319-18431338 MS.gene78946:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG + chr5.3:18431785-18431804 MS.gene78946:intron 35.0%
CAAATGAGGCAGGTTTAATA+GGG - chr5.3:18432543-18432562 None:intergenic 35.0%
CAATCTGATGTATACGACAA+TGG + chr5.3:18430848-18430867 MS.gene78946:CDS 35.0%
CATCATCACTTCCAAAATAG+TGG + chr5.3:18428683-18428702 MS.gene78946:CDS 35.0%
CATCTCCATAATAATGTGCA+TGG - chr5.3:18432330-18432349 None:intergenic 35.0%
CTCCCTTAAACCATGAAATA+GGG + chr5.3:18430825-18430844 MS.gene78946:intron 35.0%
CTCTGTGTTTGGTTGTAATA+GGG + chr5.3:18432093-18432112 MS.gene78946:intron 35.0%
GAAGATGAAGCATACTTTCA+TGG - chr5.3:18429135-18429154 None:intergenic 35.0%
GATTTATCCATTAAGCAGCA+AGG + chr5.3:18430932-18430951 MS.gene78946:CDS 35.0%
GCACTAAGTTTCTCATTTGT+TGG - chr5.3:18431813-18431832 None:intergenic 35.0%
GCATTCATGGAAGTTTCAAA+GGG - chr5.3:18431892-18431911 None:intergenic 35.0%
GTCTAAGAAAACCAAGTTCT+TGG - chr5.3:18428823-18428842 None:intergenic 35.0%
GTGAAAACTACAGATAGAGT+AGG + chr5.3:18430685-18430704 MS.gene78946:CDS 35.0%
GTTCCTTATCTTATGCCTTA+AGG + chr5.3:18430203-18430222 MS.gene78946:intron 35.0%
TAGTATTAGAGAACAGGTAG+AGG - chr5.3:18432823-18432842 None:intergenic 35.0%
TCAAACATTAGGCTCTTGTA+TGG + chr5.3:18431784-18431803 MS.gene78946:intron 35.0%
TCAAATGAGGCAGGTTTAAT+AGG - chr5.3:18432544-18432563 None:intergenic 35.0%
TCCAATGGTTTCCTTAGAAA+GGG + chr5.3:18429725-18429744 MS.gene78946:intron 35.0%
TCTCCCTTAAACCATGAAAT+AGG + chr5.3:18430824-18430843 MS.gene78946:intron 35.0%
TCTCTGTGTTTGGTTGTAAT+AGG + chr5.3:18432092-18432111 MS.gene78946:intron 35.0%
TCTGAAAACAAGTAGGACAA+AGG + chr5.3:18429907-18429926 MS.gene78946:intron 35.0%
TGAAGTTGAGGGAATGATAA+AGG - chr5.3:18428881-18428900 None:intergenic 35.0%
TGCCCTATTTCATGGTTTAA+GGG - chr5.3:18430830-18430849 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG + chr5.3:18430663-18430682 MS.gene78946:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG + chr5.3:18429724-18429743 MS.gene78946:intron 35.0%
TTGCCCTATTTCATGGTTTA+AGG - chr5.3:18430831-18430850 None:intergenic 35.0%
TTGGTTACATGGTAAACCAA+AGG + chr5.3:18432120-18432139 MS.gene78946:CDS 35.0%
TTGTTGGATTTGAAAGAGAG+AGG - chr5.3:18428619-18428638 None:intergenic 35.0%
TTTATACTCACCTGACAAGT+GGG + chr5.3:18431320-18431339 MS.gene78946:intron 35.0%
! AACTATGAGGTAGTTTGTCT+TGG - chr5.3:18429952-18429971 None:intergenic 35.0%
! ACAGAAGAGGAAATGGATTT+GGG + chr5.3:18428515-18428534 MS.gene78946:CDS 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG - chr5.3:18432750-18432769 None:intergenic 35.0%
! ATGTGTTTGGAATGCATGAA+AGG + chr5.3:18432259-18432278 MS.gene78946:intron 35.0%
! CATTGAGTAATGATGGTGTT+TGG - chr5.3:18430322-18430341 None:intergenic 35.0%
! CTACTACTTCTTTGAAGAGT+AGG - chr5.3:18431694-18431713 None:intergenic 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG + chr5.3:18431759-18431778 MS.gene78946:intron 35.0%
! GGTTTTCTTAGACCTATTAG+AGG + chr5.3:18428830-18428849 MS.gene78946:CDS 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG + chr5.3:18431758-18431777 MS.gene78946:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG + chr5.3:18429445-18429464 MS.gene78946:CDS 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG + chr5.3:18431760-18431779 MS.gene78946:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG + chr5.3:18432260-18432279 MS.gene78946:intron 35.0%
! TTCAATCTCAAGCTTTGATG+AGG + chr5.3:18428999-18429018 MS.gene78946:CDS 35.0%
! TTTTGTGGGGTTCAAACATT+AGG + chr5.3:18431773-18431792 MS.gene78946:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr5.3:18430221-18430240 None:intergenic 35.0%
!! CGAGGGAATATTTCTACTTT+TGG - chr5.3:18430105-18430124 None:intergenic 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG + chr5.3:18429404-18429423 MS.gene78946:intron 35.0%
!!! GACCCATTTTTTTTGGTACT+TGG - chr5.3:18430045-18430064 None:intergenic 35.0%
!!! GTTGTTGGTTTTGTATTTGG+AGG - chr5.3:18428467-18428486 None:intergenic 35.0%
AAAGACAAATCTGGTTGTGC+TGG - chr5.3:18428434-18428453 None:intergenic 40.0%
AATAGGGAAGCTTGGTTACA+TGG + chr5.3:18432109-18432128 MS.gene78946:intron 40.0%
AATGAGGCAGGTTTAATAGG+GGG - chr5.3:18432541-18432560 None:intergenic 40.0%
ACATGTCAAGTCTCACTTAC+AGG + chr5.3:18429481-18429500 MS.gene78946:CDS 40.0%
AGAACAGGTAGAGGAATCAA+AGG - chr5.3:18432814-18432833 None:intergenic 40.0%
AGTTGAGGGAATGATAAAGG+AGG - chr5.3:18428878-18428897 None:intergenic 40.0%
CAAAAGAATTCCCACTTGTC+AGG - chr5.3:18431333-18431352 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG + chr5.3:18428809-18428828 MS.gene78946:CDS 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG - chr5.3:18428811-18428830 None:intergenic 40.0%
CATCAGATTGCCCTATTTCA+TGG - chr5.3:18430838-18430857 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG + chr5.3:18432707-18432726 MS.gene78946:intron 40.0%
CTCAACTTCACATGCAAACA+TGG + chr5.3:18431493-18431512 MS.gene78946:intron 40.0%
CTCTCATAGCTTAGACACTT+TGG - chr5.3:18433377-18433396 None:intergenic 40.0%
CTCTCTTCCAGTTGTTCAAA+AGG + chr5.3:18431629-18431648 MS.gene78946:intron 40.0%
CTTCACATGCAAACATGGTT+AGG + chr5.3:18431498-18431517 MS.gene78946:intron 40.0%
GAACCATGCAGTGGTTATAT+AGG + chr5.3:18433062-18433081 MS.gene78946:intron 40.0%
GAAGATGGTACGATTCTGAT+TGG + chr5.3:18429607-18429626 MS.gene78946:intron 40.0%
GAGAACAACAAACACAGAAG+AGG + chr5.3:18428502-18428521 MS.gene78946:CDS 40.0%
GAGGGAAAGGAAATTTGAGA+TGG - chr5.3:18432751-18432770 None:intergenic 40.0%
GCTCCACACAGCATTTATAT+AGG - chr5.3:18432971-18432990 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG + chr5.3:18430857-18430876 MS.gene78946:CDS 40.0%
TACTGTACAGCTGTATTTGC+AGG + chr5.3:18431136-18431155 MS.gene78946:intron 40.0%
TGAGCATCCAAAATCCATGA+TGG + chr5.3:18431589-18431608 MS.gene78946:intron 40.0%
TGCCCTTAAGGCATAAGATA+AGG - chr5.3:18430209-18430228 None:intergenic 40.0%
TGGAAACATGCAATCTCTTG+AGG + chr5.3:18432153-18432172 MS.gene78946:CDS 40.0%
TTCCTTATCTTGTGCCCTTA+GGG - chr5.3:18430081-18430100 None:intergenic 40.0%
TTGAACCCCACAAAATCCTA+AGG - chr5.3:18431768-18431787 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG + chr5.3:18432101-18432120 MS.gene78946:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG - chr5.3:18429729-18429748 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG - chr5.3:18428768-18428787 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG - chr5.3:18429805-18429824 None:intergenic 40.0%
! CACAGAAGAGGAAATGGATT+TGG + chr5.3:18428514-18428533 MS.gene78946:CDS 40.0%
! CAGAAGAGGAAATGGATTTG+GGG + chr5.3:18428516-18428535 MS.gene78946:CDS 40.0%
! CTCTCATGCTTCTTTTTGCT+GGG - chr5.3:18429045-18429064 None:intergenic 40.0%
! CTTGCTAACTTGTACCCTAA+GGG + chr5.3:18430064-18430083 MS.gene78946:intron 40.0%
! CTTTAACCATGGTTAGTCAC+AGG + chr5.3:18430390-18430409 MS.gene78946:intron 40.0%
! GGAAGTGATGATGATGAATG+AGG - chr5.3:18428676-18428695 None:intergenic 40.0%
! GGGAAAGGAAATTTGAGATG+GGG - chr5.3:18432749-18432768 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG - chr5.3:18429806-18429825 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG - chr5.3:18431589-18431608 None:intergenic 40.0%
! TCTTGCTAACTTGTACCCTA+AGG + chr5.3:18430063-18430082 MS.gene78946:intron 40.0%
! TGATCTTCCTTGCTGCTTAA+TGG - chr5.3:18430942-18430961 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG + chr5.3:18433455-18433474 MS.gene78946:CDS 40.0%
! TTTTGGATGCTCATGGTTTG+TGG - chr5.3:18431582-18431601 None:intergenic 40.0%
!! AGGAAATGGATTTGGGGTTT+TGG + chr5.3:18428522-18428541 MS.gene78946:CDS 40.0%
AAAGCTGCCATGGTAGAGAA+AGG - chr5.3:18430374-18430393 None:intergenic 45.0%
AACCATGGTTAAAGCTGCCA+TGG - chr5.3:18430384-18430403 None:intergenic 45.0%
AATACACACGCCTGCATGAA+TGG + chr5.3:18432638-18432657 MS.gene78946:intron 45.0%
ATAAATGCTGTGTGGAGCAG+TGG + chr5.3:18432973-18432992 MS.gene78946:intron 45.0%
ATAACCACTGCATGGTTCAG+TGG - chr5.3:18433060-18433079 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG - chr5.3:18429965-18429984 None:intergenic 45.0%
CAAGTTCTATAGCACTTGGC+AGG + chr5.3:18432711-18432730 MS.gene78946:intron 45.0%
GAGGGAATGATAAAGGAGGA+GGG - chr5.3:18428874-18428893 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG + chr5.3:18430697-18430716 MS.gene78946:CDS 45.0%
GTTCATGCTGTTGAGCTCTT+AGG + chr5.3:18429106-18429125 MS.gene78946:CDS 45.0%
GTTCCTTATCTTGTGCCCTT+AGG - chr5.3:18430082-18430101 None:intergenic 45.0%
TCAGTGGCTCGTAGAATCAT+TGG - chr5.3:18433044-18433063 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG - chr5.3:18433427-18433446 None:intergenic 45.0%
TGAGGGAATGATAAAGGAGG+AGG - chr5.3:18428875-18428894 None:intergenic 45.0%
TGAGTGAGTGATCAAGAGAG+AGG - chr5.3:18431477-18431496 None:intergenic 45.0%
! AAAGAAGCATGAGAGCTCCA+AGG + chr5.3:18429050-18429069 MS.gene78946:CDS 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG + chr5.3:18432719-18432738 MS.gene78946:intron 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG - chr5.3:18429946-18429965 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG - chr5.3:18428769-18428788 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG - chr5.3:18429046-18429065 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG - chr5.3:18428808-18428827 None:intergenic 45.0%
! TACCATGGCAGCTTTAACCA+TGG + chr5.3:18430379-18430398 MS.gene78946:intron 45.0%
! TACCCTAAGGGCACAAGATA+AGG + chr5.3:18430076-18430095 MS.gene78946:intron 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG - chr5.3:18429947-18429966 None:intergenic 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG - chr5.3:18428767-18428786 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG - chr5.3:18430672-18430691 None:intergenic 45.0%
!! GGAGGAGGGTTTTGATAAAC+AGG - chr5.3:18428860-18428879 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG - chr5.3:18428773-18428792 None:intergenic 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG + chr5.3:18430990-18431009 MS.gene78946:CDS 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG + chr5.3:18428535-18428554 MS.gene78946:CDS 45.0%
!! AAAAAAATAGTATAAAAAAA+AGG - chr5.3:18431051-18431070 None:intergenic 5.0%
!! AAATAAATAAGTAAATAAAA+AGG - chr5.3:18429318-18429337 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG + chr5.3:18431082-18431101 MS.gene78946:intron 5.0%
!!! AATTATTATTATTTTTTCTA+TGG + chr5.3:18429383-18429402 MS.gene78946:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG - chr5.3:18429984-18430003 None:intergenic 5.0%
!!! ATTTTATTACAAAAAAAAAA+TGG - chr5.3:18433294-18433313 None:intergenic 5.0%
CATGCTGTTGAGCTCTTAGG+TGG + chr5.3:18429109-18429128 MS.gene78946:CDS 50.0%
GCTGTATTTGCAGGAACCGT+TGG + chr5.3:18431145-18431164 MS.gene78946:intron 50.0%
GGACTACAAGGGCTTAGCTT+TGG - chr5.3:18431835-18431854 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG - chr5.3:18429070-18429089 None:intergenic 50.0%
GTGTTGCAGTTGCAAGTTGC+AGG - chr5.3:18431217-18431236 None:intergenic 50.0%
GTTGCAAGTTGCAGGAACGT+TGG - chr5.3:18431209-18431228 None:intergenic 50.0%
TGGAAGCCTGTGACTAACCA+TGG - chr5.3:18430399-18430418 None:intergenic 50.0%
! CTTGGCTTAAGCTTTGGTGG+TGG - chr5.3:18428805-18428824 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG - chr5.3:18428766-18428785 None:intergenic 50.0%
!! CTTTGGTGGTGGTGTTGTTG+TGG - chr5.3:18428794-18428813 None:intergenic 50.0%
!! GGTGGTGTTGTTGTGGTTGA+TGG - chr5.3:18428787-18428806 None:intergenic 50.0%
GTTGCAGAAGAAGCAGGGAG+AGG - chr5.3:18429800-18429819 None:intergenic 55.0%
TGAGAGCTCCAAGGATGCGT+TGG + chr5.3:18429059-18429078 MS.gene78946:CDS 55.0%
CGAGCCACTGAACCATGCAG+TGG + chr5.3:18433053-18433072 MS.gene78946:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 18428419 18433490 18428419 ID=MS.gene78946
chr5.3 mRNA 18428419 18433490 18428419 ID=MS.gene78946.t1;Parent=MS.gene78946
chr5.3 exon 18428419 18429139 18428419 ID=MS.gene78946.t1.exon1;Parent=MS.gene78946.t1
chr5.3 CDS 18428419 18429139 18428419 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
chr5.3 exon 18429426 18429502 18429426 ID=MS.gene78946.t1.exon2;Parent=MS.gene78946.t1
chr5.3 CDS 18429426 18429502 18429426 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
chr5.3 exon 18430673 18430718 18430673 ID=MS.gene78946.t1.exon3;Parent=MS.gene78946.t1
chr5.3 CDS 18430673 18430718 18430673 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
chr5.3 exon 18430846 18431011 18430846 ID=MS.gene78946.t1.exon4;Parent=MS.gene78946.t1
chr5.3 CDS 18430846 18431011 18430846 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
chr5.3 exon 18432114 18432174 18432114 ID=MS.gene78946.t1.exon5;Parent=MS.gene78946.t1
chr5.3 CDS 18432114 18432174 18432114 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
chr5.3 exon 18433362 18433490 18433362 ID=MS.gene78946.t1.exon6;Parent=MS.gene78946.t1
chr5.3 CDS 18433362 18433490 18433362 ID=cds.MS.gene78946.t1;Parent=MS.gene78946.t1
Gene Sequence

>MS.gene78946

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACAAAACCAACAACAACAAGTAATTGGAAGAGAACAACAAACACAGAAGAGGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACAACACTTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTATCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACACCACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAACCCTCCTCCTTTATCATTCCCTCAACTTCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTGCTACTACTACACCTTCTACTATTTCTAACAACAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTCCCAGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGTATGCTTCATCTTCAATTTCCACTTTCTTAAAAATATATTTCTTTTTGGTTAATTTTCCTTAATCCTCCTTTTTATTCTAGCTTAATTACACCCTTGTTTTAATTTTCTTTAACATGAAAATTTAACAAGACAATTAGAAGAAAAAAGGGTGTGAAACTTAGAAAGAGAATTTTCCTTTTTATTTACTTATTTATTTATTTTTAATTTGACTATGATATAAATTTGATTTTTTTTCTTAACTAATTATTATTATTTTTTCTATGGTGTTTGAATGTTTGCTATAGGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGGTAAACCTTAAACTCTAATTTGTCTTAATTGCATTTTGTTTATAAATAAATAATCTATCTTACTATTAAATAATTTTTTCATTGTTAAATTCTTTAGTCAGATTGAAGATGGTACGATTCTGATTGGGATTTAATGATGTTTAAATTTATATGCTACATTATTATTATTTATATACTTATACATTAGAGGAAGCAATTAAGTAATGAATATTAATTTCAAATTCCAATGGTTTCCTTAGAAAGGGTTTCTCTCAATCAAATACTTTGTGCTTCTTTTTTCTATTAGATCTGCTGCCTCTCCCTGCTTCTTCTGCAACCTAATAAACAGCTTTTTACTTTGAAGAATGAACCATCCAACTTAAAAGAATATAAAATGTAGAAAGAGAAAGAAGTACTTATCGATTTCTGAAAACAAGTAGGACAAAGGCTTATGAATCTCACCCAAGCCAAGACAAACTACCTCATAGTTCTGTCCATGCCATTAATAAAATTAGTAATAATATACTTATTTATTTTTCTTGTAAGAAATTATATTAGTACCAAGTACCAAAAAAAATGGGTCTTGCTAACTTGTACCCTAAGGGCACAAGATAAGGAACCCAAAAGTAGAAATATTCCCTCGAATTTTGTGCATTCTATTTATTGTAAACTCAAAAATTCAATTGAATGCACACATTTCAACAAAAAGTTGCTATGTTAGGTTCCTTATCTTATGCCTTAAGGGCACAAGTTAACATTTCCCATAATTAAATTGAAGTAAAAAATTAAAAAAAAAAACAAAAAAACAAAACAAAATGATAGGTTAGCATGCATGTACCAAACACCATCATTACTCAATGATCTCTTCATGCAATATGACCTTTTTTTTCCTTTCTCTACCATGGCAGCTTTAACCATGGTTAGTCACAGGCTTCCATGCATATGCATATTATAAAACCATAACCATAAATGCTTCTGTATTAGATCTTGTACTCTACTGCATATATCAATTTAATACTTGCAAGTAACAACTTTACTTAGAGGACATTAATTTCTTATTCTTGCTGCAAACTTCTTTAATTTGTTTCATTTGTTACTAATAATATGATTTAATTTTGGAAGCATATTTTTTTTTTATAAAAATTTACTTTATTCTAGCTAATGTTTATGATATGTTAATTTTAAATCCAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGTTAGTTCAAATTTTCATTCTATCATATATTAATTGTTGGAAGATTAATGAAGACTATTATGTTAATAGATAATTAACTTGCTCTTCTTTTTTCTTTTTCTTTTTTCTCCCTTAAACCATGAAATAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGTAATGCTTCTAAATCTAGTTAATTGTACCTATAATCCTTTTTTTTATACTATTTTTTTTAACAACAAAGAAATTTTTATTAAAAATGATAGGAATAAGTACAATAAATTTTTCATTAGATAGATACTGTACAGCTGTATTTGCAGGAACCGTTGGATTTTGAGAGAGTATAATCTTAATTTATCTCTCTGAATCCAACGTTCCTGCAACTTGCAACTGCAACACCATATTGCAACTATATCTCGTTCGTCTCCAAAGCCTAACGATGTTGTTTTAAATGATTAATATTGAAAAATCATAGACACATATTTATACTCACCTGACAAGTGGGAATTCTTTTGTCATGTTTTTTAAAATATTTATATTTTGTACTATGTTTTTGCAAGTCATGCATATACTAATATAAATAAAACGATTGCATGCATGTCTTATTCATAGACACATTTCTTTGTTCTTTTCTTTCCTCTCTCTTGATCACTCACTCAACTTCACATGCAAACATGGTTAGGCTCAAAAATTCACAAAAAAGAATACATCATTTCATTAGTTTGCTTTGTTTATGTCTGTCCACAAACCATGAGCATCCAAAATCCATGATGGTCTAATAATAATATATACTCTCTTCCAGTTGTTCAAAAGGAAGTAAAAAAAGTTACACACACACACACACACACACTCTCCTACTCTTCAAAGAAGTAGTAGTATTTTGTTATTTTCCAAAAATCTTCCTTAAAAAAATAGAGATATCTCTTTCCTTAGGATTTTGTGGGGTTCAAACATTAGGCTCTTGTATGGGGCCCAACAAATGAGAAACTTAGTGCCAAAGCTAAGCCCTTGTAGTCCCATAATTAGAAATCTTGAAACCAAAGCAAATATTCCCTTTGAAACTTCCATGAATGCTCCTATATTATATATAGTCATAGAATAAATGGAATATATATGATATCAATTAGAATAGCATAAACTTTATTCCAATCTTTAGAATAAGTAAAAGGCATATAAGTAAGATGGTAAAAAGATGAATTTCTTTCCTTAAGTTTTGCTTTTCTTTTTCATGGCTTCAAGTAATGAGAAATATTCTCTCTGTGTTTGGTTGTAATAGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGGTAATATATTCCCCCTTTATATTCCAAAGGTTAAGCCTTTTGTTTTGAAAAAGTTATTAAAATTATATACACAAATTTCAAAGCATGTGTTTGGAATGCATGAAAGGGATTTTTTAGAAGAAAAGGAAATACGTTTGATCTTTTTCATATTGCCATGCACATTATTATGGAGATGAATGAGAAAAAAGAAAGAAAAAAAAGGCTTTGCATAAAGCTGCTTTGTCCTTCACAAATTCAAATGGTTAGACTAGTCCTTTTCACATTTACCAATTACAAAAGGTTAAAAACGATTTGTGATGTAAAAAAGGTTCCTCTAGTTAAGAGTTATTAATTGACCATATTGAAAATGACTATATAATAGAACCCCCTATTAAACCTGCCTCATTTGACTCAATTATCAATGGTCTAGACCATACTATATGATAATTTATATAGTTGAGTCAAATTAATAAATAAATTAATAAATACACACGCCTGCATGAATGGTATAATGTTTTATATACACAAATAATTGGAAGCTATAGCACATGAACATGCAAGTTCTATAGCACTTGGCAGGCTTTTAGGTGTGCCCCATCTCAAATTTCCTTTCCCTCATTCATATAAATATTCTTTAATTATTTCTGAGTCAAATGTCCTTTGATTCCTCTACCTGTTCTCTAATACTATATACTCCCTTTCATACTCACAGTAATTTATTTTCCTCTTTTAGCCCTTTAATCATATTCTCATCATAACACAATATTTTTTCTAAGAAGTCATTGCCTTTTACTATGAGTAATGAGAGTTAAATCCTATATAAATGCTGTGTGGAGCAGTGGAAAGTAGAGTCATTTGATTTAGAGAACTTTATTGTCTTTTTAAATCCAATGATTCTACGAGCCACTGAACCATGCAGTGGTTATATAGGAATCAAATGTACGAGTTGTTGCCATTTCTTTTGAATCGTATTTTTTGAAATTAGTTCCTATTCGACAACACATTGAATTTAGATATCATTTATCTTTCTTATATGTAGCTTTTTGTTCATGATATGTCAGTTCAATGATAAGAATTTGATTTTGTAATTTTAATGGTCGTTAGTGTCACATTAATTAAAAACAATTTCTCCCTTTTCCATTTTTTTTTTGTAATAAAATAATTTATTCTGATCTTTGATACCAATTTATTGTTATTTGCTTTTTCAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>MS.gene78946.t1

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTNTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKPLDSNNNTSNNLIHHHHFQNSGNNNANNPYQSFHQNHYFQHPQPLFQHHQPQQHHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNLNHLHILDGATTTPSTISNNNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL