AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79009

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79009.t1 MTR_7g096610 92.411 224 16 1 1 223 1 224 1.15e-151 420
MS.gene79009.t1 MTR_1g070205 68.586 191 50 5 8 194 12 196 9.81e-88 259
MS.gene79009.t1 MTR_7g096530 70.755 106 31 0 3 108 9 114 4.35e-52 167
MS.gene79009.t1 MTR_5g080470 54.422 147 63 2 2 145 1 146 5.75e-50 161
MS.gene79009.t1 MTR_8g036085 68.932 103 32 0 8 110 23 125 6.68e-48 157
MS.gene79009.t1 MTR_1g070220 67.308 104 34 0 5 108 12 115 3.41e-46 152
MS.gene79009.t1 MTR_7g074990 68.317 101 32 0 8 108 20 120 9.04e-46 152
MS.gene79009.t1 MTR_8g036105 63.208 106 39 0 5 110 15 120 2.36e-45 150
MS.gene79009.t1 MTR_6g027710 61.111 108 42 0 7 114 39 146 2.80e-43 145
MS.gene79009.t1 MTR_7g075230 62.185 119 40 4 6 122 10 125 3.48e-42 142
MS.gene79009.t1 MTR_3g071590 43.243 148 81 2 1 148 1 145 1.71e-34 120
MS.gene79009.t1 MTR_5g083230 44.375 160 74 5 4 162 2 147 1.43e-33 119
MS.gene79009.t1 MTR_6g027700 53.465 101 47 0 8 108 7 107 8.02e-33 118
MS.gene79009.t1 MTR_4g083680 50.943 106 51 1 4 109 11 115 1.92e-31 113
MS.gene79009.t1 MTR_7g033800 54.082 98 44 1 5 102 8 104 5.33e-31 112
MS.gene79009.t1 MTR_3g031660 42.581 155 82 6 4 157 2 150 6.17e-31 112
MS.gene79009.t1 MTR_5g083010 48.624 109 54 2 5 113 8 114 7.57e-31 112
MS.gene79009.t1 MTR_3g452660 49.123 114 57 1 2 115 1 113 1.28e-30 114
MS.gene79009.t1 MTR_2g068760 53.000 100 46 1 4 103 9 107 1.83e-30 110
MS.gene79009.t1 MTR_4g105170 55.208 96 42 1 7 102 10 104 2.47e-30 111
MS.gene79009.t1 MTR_5g083960 51.456 103 47 2 7 108 38 138 3.76e-30 110
MS.gene79009.t1 MTR_3g077240 54.167 96 43 1 7 102 9 103 8.88e-30 109
MS.gene79009.t1 MTR_3g094690 53.465 101 44 2 7 106 46 144 2.42e-29 110
MS.gene79009.t1 MTR_5g017950 50.000 110 54 1 1 110 1 109 4.39e-29 111
MS.gene79009.t1 MTR_3g071420 47.573 103 53 1 5 107 11 112 6.02e-29 107
MS.gene79009.t1 MTR_6g005070 51.020 98 47 1 5 102 6 102 8.18e-29 105
MS.gene79009.t1 MTR_3g073690 46.364 110 58 1 1 110 2 110 1.91e-28 106
MS.gene79009.t1 MTR_3g094690 53.465 101 43 3 7 106 46 143 1.34e-27 105
MS.gene79009.t1 MTR_2g093310 49.485 97 48 1 7 103 32 127 1.38e-27 104
MS.gene79009.t1 MTR_6g005080 48.544 103 51 2 1 102 2 103 5.32e-27 101
MS.gene79009.t1 MTR_4g060950 51.020 98 46 2 7 103 23 119 3.06e-25 98.2
MS.gene79009.t1 MTR_1g095850 49.474 95 47 1 9 103 73 166 2.69e-24 96.7
MS.gene79009.t1 MTR_5g075020 53.398 103 45 2 7 108 42 142 3.19e-24 96.3
MS.gene79009.t1 MTR_5g075020 53.398 103 45 2 7 108 46 146 5.80e-24 95.9
MS.gene79009.t1 MTR_8g040900 52.874 87 40 1 2 88 1 86 5.72e-23 93.2
MS.gene79009.t1 MTR_5g093010 40.157 127 69 3 9 135 6 125 6.95e-23 90.5
MS.gene79009.t1 MTR_7g028905 41.346 104 60 1 7 110 4 106 5.10e-22 87.4
MS.gene79009.t1 MTR_8g079660 35.577 104 66 1 8 111 8 110 1.43e-16 76.6
MS.gene79009.t1 MTR_8g079620 38.462 104 63 1 8 111 8 110 2.79e-16 75.5
MS.gene79009.t1 MTR_2g100020 33.645 107 70 1 4 110 15 120 6.63e-16 75.1
MS.gene79009.t1 MTR_8g017090 35.294 102 65 1 9 110 13 113 7.05e-16 75.1
MS.gene79009.t1 MTR_4g107450 35.238 105 67 1 4 108 6 109 1.54e-15 74.3
MS.gene79009.t1 MTR_8g079580 35.294 102 64 2 8 108 8 108 1.90e-14 70.1
MS.gene79009.t1 MTR_6g011200 40.000 85 47 3 9 90 10 93 1.99e-13 67.8
MS.gene79009.t1 MTR_6g011230 33.019 106 67 2 9 111 12 116 1.59e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79009.t1 AT3G58190 78.814 118 23 1 8 123 11 128 4.39e-67 206
MS.gene79009.t1 AT2G42440 71.756 131 35 1 2 130 1 131 2.49e-65 202
MS.gene79009.t1 AT2G31310 59.859 142 56 1 2 143 1 141 8.10e-57 179
MS.gene79009.t1 AT2G42430 70.093 107 32 0 4 110 11 117 1.52e-50 164
MS.gene79009.t1 AT4G00210 56.061 132 57 1 3 133 6 137 3.54e-48 158
MS.gene79009.t1 AT5G06080 66.355 107 36 0 2 108 1 107 2.64e-47 154
MS.gene79009.t1 AT3G03760 68.627 102 32 0 7 108 50 151 2.62e-46 154
MS.gene79009.t1 AT2G45420 71.000 100 29 0 11 110 40 139 9.94e-46 153
MS.gene79009.t1 AT4G00220 67.000 100 33 0 11 110 20 119 7.70e-43 144
MS.gene79009.t1 AT2G45410 59.130 115 44 2 11 122 19 133 6.82e-41 138
MS.gene79009.t1 AT3G27650 55.208 96 42 1 7 102 38 132 1.08e-30 111
MS.gene79009.t1 AT2G30130 50.000 118 55 3 2 118 1 115 2.67e-30 111
MS.gene79009.t1 AT5G63090 39.572 187 90 6 7 193 10 173 3.76e-30 110
MS.gene79009.t1 AT5G63090 39.572 187 90 6 7 193 10 173 3.76e-30 110
MS.gene79009.t1 AT5G63090 39.572 187 90 6 7 193 10 173 3.76e-30 110
MS.gene79009.t1 AT5G63090 39.572 187 90 6 7 193 10 173 3.76e-30 110
MS.gene79009.t1 AT1G07900 51.546 97 46 1 7 103 32 127 1.55e-28 106
MS.gene79009.t1 AT3G11090 48.077 104 53 1 5 108 8 110 2.08e-28 105
MS.gene79009.t1 AT1G31320 51.087 92 44 1 4 95 9 99 2.23e-28 105
MS.gene79009.t1 AT1G16530 46.610 118 60 3 7 122 13 129 5.70e-28 104
MS.gene79009.t1 AT2G28500 51.546 97 46 1 7 103 54 149 9.45e-28 105
MS.gene79009.t1 AT5G66870 49.541 109 54 1 2 110 1 108 3.55e-27 105
MS.gene79009.t1 AT2G30340 49.515 103 49 2 7 108 52 152 1.08e-26 103
MS.gene79009.t1 AT2G30340 49.515 103 49 2 7 108 51 151 1.19e-26 103
MS.gene79009.t1 AT2G23660 47.059 102 53 1 7 108 4 104 6.27e-25 100
MS.gene79009.t1 AT2G23660 47.059 102 53 1 7 108 4 104 6.27e-25 100
MS.gene79009.t1 AT2G23660 47.059 102 53 1 7 108 4 104 6.27e-25 100
MS.gene79009.t1 AT3G50510 42.478 113 64 1 2 114 6 117 6.87e-25 97.4
MS.gene79009.t1 AT3G50510 42.478 113 64 1 2 114 6 117 6.87e-25 97.4
MS.gene79009.t1 AT3G26660 44.211 95 52 1 9 103 6 99 2.54e-24 93.6
MS.gene79009.t1 AT3G26620 44.211 95 52 1 9 103 6 99 5.10e-24 92.8
MS.gene79009.t1 AT1G65620 54.651 86 38 1 3 88 4 88 1.17e-23 94.4
MS.gene79009.t1 AT1G65620 54.651 86 38 1 3 88 4 88 1.17e-23 94.4
MS.gene79009.t1 AT1G65620 54.651 86 38 1 3 88 4 88 1.17e-23 94.4
MS.gene79009.t1 AT1G65620 54.651 86 38 1 3 88 4 88 1.17e-23 94.4
MS.gene79009.t1 AT1G65620 54.651 86 38 1 3 88 4 88 1.17e-23 94.4
MS.gene79009.t1 AT2G40470 52.427 103 46 2 7 108 19 119 1.65e-23 94.0
MS.gene79009.t1 AT2G40470 52.427 103 46 2 7 108 44 144 2.97e-23 93.6
MS.gene79009.t1 AT3G13850 36.441 118 65 3 9 118 37 152 2.49e-16 75.9
MS.gene79009.t1 AT1G72980 34.286 105 68 1 4 108 9 112 1.30e-14 70.5
MS.gene79009.t1 AT5G35900 36.275 102 64 1 9 110 6 106 3.88e-14 68.9
MS.gene79009.t1 AT1G06280 38.158 76 46 1 9 84 25 99 4.31e-13 66.2
MS.gene79009.t1 AT3G47870 34.831 89 57 1 4 92 32 119 1.02e-12 66.6

Find 47 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTAATGAGAAGAATTT+TGG 0.142515 5.2:-26919877 MS.gene79009:CDS
AGACTTCAAGATCCAATTTA+TGG 0.150762 5.2:-26920494 MS.gene79009:CDS
CCTTATGAATAGCTGCAAAA+TGG 0.260543 5.2:+26920612 None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG 0.262535 5.2:+26919774 None:intergenic
TTTCCAAAATTCTTCTCATT+AGG 0.268066 5.2:+26919874 None:intergenic
TTCCAAAATTCTTCTCATTA+GGG 0.280730 5.2:+26919875 None:intergenic
GCAGCTATTCATAAGGTCTT+TGG 0.287235 5.2:-26920605 MS.gene79009:CDS
TGGGCAACAGAACCATAAAT+TGG 0.301569 5.2:+26920482 None:intergenic
CTCATGGATCTAAACCCTAT+TGG 0.344271 5.2:-26919709 MS.gene79009:CDS
ATTGGAAACTATGAAAATTC+AGG 0.345302 5.2:-26919691 MS.gene79009:CDS
TTTCCTCCTCAAGAATTTGC+AGG 0.357584 5.2:+26920688 None:intergenic
ATGAGATGCTTTCTTCCAAT+AGG 0.363922 5.2:+26919665 None:intergenic
TGAAAATTCAGGAACCCTAT+TGG 0.376897 5.2:-26919680 MS.gene79009:CDS
AATGGGTAGCACTTTGTTCA+TGG 0.389795 5.2:+26920630 None:intergenic
ACGGCCATGATGACTGGTTC+TGG 0.395558 5.2:-26920725 None:intergenic
CTGTCGTTGCATGTTGTCAT+AGG 0.398706 5.2:+26919603 None:intergenic
TTGAGGAGGAAATGTGTTAG+AGG 0.402110 5.2:-26920677 MS.gene79009:CDS
TGAGATGCTTTCTTCCAATA+GGG 0.428947 5.2:+26919666 None:intergenic
TCTTGAGGGAGAATATTAGT+AGG 0.429657 5.2:+26919850 None:intergenic
CTTATGAATAGCTGCAAAAT+GGG 0.434815 5.2:+26920613 None:intergenic
ATTCTTACGGCCATGATGAC+TGG 0.446907 5.2:-26920731 None:intergenic
TGTTGTTGATGAGAGATTAG+TGG 0.463491 5.2:+26919759 None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG 0.463884 5.2:-26919837 MS.gene79009:CDS
CTTTGTTCATGGCAAAAGTA+AGG 0.479437 5.2:+26920641 None:intergenic
CAACAACACAATATTACAAT+GGG 0.480559 5.2:-26919744 MS.gene79009:CDS
CAAATTAGCCACTTACTGAT+AGG 0.482945 5.2:+26919576 None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG 0.494488 5.2:-26920713 MS.gene79009:CDS
GAGATGAACAAACCTGTTGT+TGG 0.499408 5.2:+26920447 None:intergenic
TCTTCAAAGTTGGTTCCAGA+TGG 0.523638 5.2:-26919827 MS.gene79009:CDS
AACCAACTTTGAAGATCTTG+AGG 0.528680 5.2:+26919835 None:intergenic
GCTTCACAACGATCAGTCAC+AGG 0.531664 5.2:+26920548 None:intergenic
TGGGACTACAAACACTCTCA+TGG 0.531675 5.2:-26919725 MS.gene79009:CDS
TTAGTGGAAGAAGAGAAATC+GGG 0.531706 5.2:+26919775 None:intergenic
ACCAACTTTGAAGATCTTGA+GGG 0.534056 5.2:+26919836 None:intergenic
GTGGAGCCTGCAAATTCTTG+AGG 0.534107 5.2:-26920694 MS.gene79009:CDS
AAGAAATTGAGAACACATGC+TGG 0.541655 5.2:+26919798 None:intergenic
ATGAACAAACCTGTTGTTGG+AGG 0.558332 5.2:+26920450 None:intergenic
AGAACCAGAACCAGTCATCA+TGG 0.567393 5.2:+26920721 None:intergenic
TCAACAACACAATATTACAA+TGG 0.569747 5.2:-26919745 MS.gene79009:CDS
TGAGAGAACAAGCAGCTCAA+AGG 0.584503 5.2:-26919924 MS.gene79009:CDS
AAGAATTTGCAGGCTCCACA+AGG 0.586151 5.2:+26920698 None:intergenic
CAGTCACAGGGAGGTGTGCG+AGG 0.596818 5.2:+26920561 None:intergenic
TGAACAAACCTGTTGTTGGA+GGG 0.625529 5.2:+26920451 None:intergenic
GAGCCTGCAAATTCTTGAGG+AGG 0.637179 5.2:-26920691 MS.gene79009:CDS
CTTCACAACGATCAGTCACA+GGG 0.652040 5.2:+26920549 None:intergenic
ATGACAACATGCAACGACAG+TGG 0.657106 5.2:-26919600 MS.gene79009:CDS
CACAACGATCAGTCACAGGG+AGG 0.754403 5.2:+26920552 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTTGTAATAAAATTT+TGG - chr5.2:26920246-26920265 MS.gene79009:intron 10.0%
!!! ACTCTTTTTTATATATAAAC+TGG + chr5.2:26920018-26920037 None:intergenic 15.0%
!!! AATTTTCATAGTTTCCAATA+GGG + chr5.2:26920615-26920634 None:intergenic 20.0%
! ATTGGAAACTATGAAAATTC+AGG - chr5.2:26920616-26920635 MS.gene79009:CDS 25.0%
! CAACAACACAATATTACAAT+GGG - chr5.2:26920563-26920582 MS.gene79009:CDS 25.0%
! TCAACAACACAATATTACAA+TGG - chr5.2:26920562-26920581 MS.gene79009:CDS 25.0%
! TTCCAAAATTCTTCTCATTA+GGG + chr5.2:26920435-26920454 None:intergenic 25.0%
! TTTCCAAAATTCTTCTCATT+AGG + chr5.2:26920436-26920455 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG + chr5.2:26920616-26920635 None:intergenic 25.0%
!! TATATTTGACAAAAGCATGA+TGG - chr5.2:26920138-26920157 MS.gene79009:intron 25.0%
!! TATGTCATGTTGATTGTATT+AGG + chr5.2:26920070-26920089 None:intergenic 25.0%
!!! ACTAATTAACAAGAGTATCA+AGG - chr5.2:26919967-26919986 MS.gene79009:intron 25.0%
!!! AGGTCTTACTATTGATTTTT+TGG + chr5.2:26920050-26920069 None:intergenic 25.0%
!!! CTAATTAACAAGAGTATCAA+GGG - chr5.2:26919968-26919987 MS.gene79009:intron 25.0%
AGACTTCAAGATCCAATTTA+TGG - chr5.2:26919813-26919832 MS.gene79009:CDS 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG + chr5.2:26920536-26920555 None:intergenic 30.0%
ATTCGTGCAGTAAATACAAT+TGG - chr5.2:26920203-26920222 MS.gene79009:intron 30.0%
CTTATGAATAGCTGCAAAAT+GGG + chr5.2:26919697-26919716 None:intergenic 30.0%
TTCTTCTTCATGATCTTTGT+AGG - chr5.2:26920330-26920349 MS.gene79009:intron 30.0%
TTGTATTTACTGCACGAATT+TGG + chr5.2:26920202-26920221 None:intergenic 30.0%
! AACCCTAATGAGAAGAATTT+TGG - chr5.2:26920430-26920449 MS.gene79009:intron 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG + chr5.2:26920419-26920438 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG + chr5.2:26920420-26920439 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG + chr5.2:26920421-26920440 None:intergenic 30.0%
AAGAAATTGAGAACACATGC+TGG + chr5.2:26920512-26920531 None:intergenic 35.0%
AATGTAAGCGTATACCATCT+AGG + chr5.2:26919907-26919926 None:intergenic 35.0%
ATGAGATGCTTTCTTCCAAT+AGG + chr5.2:26920645-26920664 None:intergenic 35.0%
ATGTAAGCGTATACCATCTA+GGG + chr5.2:26919906-26919925 None:intergenic 35.0%
CCTTATGAATAGCTGCAAAA+TGG + chr5.2:26919698-26919717 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG - chr5.2:26919890-26919909 MS.gene79009:CDS 35.0%
CTTTGTTCATGGCAAAAGTA+AGG + chr5.2:26919669-26919688 None:intergenic 35.0%
GGGTACTCCAGTTTATATAA+GGG - chr5.2:26919988-26920007 MS.gene79009:intron 35.0%
TCTTGAGGGAGAATATTAGT+AGG + chr5.2:26920460-26920479 None:intergenic 35.0%
TGAAAATTCAGGAACCCTAT+TGG - chr5.2:26920627-26920646 MS.gene79009:CDS 35.0%
TGAGATGCTTTCTTCCAATA+GGG + chr5.2:26920644-26920663 None:intergenic 35.0%
TTAGTGGAAGAAGAGAAATC+GGG + chr5.2:26920535-26920554 None:intergenic 35.0%
TTCTTCATGATCTTTGTAGG+TGG - chr5.2:26920333-26920352 MS.gene79009:intron 35.0%
TTGTTGGAGGGCAAAAATAT+GGG + chr5.2:26919847-26919866 None:intergenic 35.0%
! AACCAACTTTGAAGATCTTG+AGG + chr5.2:26920475-26920494 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG + chr5.2:26920474-26920493 None:intergenic 35.0%
! AGGGTACTCCAGTTTATATA+AGG - chr5.2:26919987-26920006 MS.gene79009:intron 35.0%
! CCATTTTGCAGCTATTCATA+AGG - chr5.2:26919695-26919714 MS.gene79009:CDS 35.0%
! TGGAGTACCCTTATATAAAC+TGG + chr5.2:26919998-26920017 None:intergenic 35.0%
! TGTTGTTGATGAGAGATTAG+TGG + chr5.2:26920551-26920570 None:intergenic 35.0%
AATGGGTAGCACTTTGTTCA+TGG + chr5.2:26919680-26919699 None:intergenic 40.0%
ATGAACAAACCTGTTGTTGG+AGG + chr5.2:26919860-26919879 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG - chr5.2:26920598-26920617 MS.gene79009:CDS 40.0%
GAGATGAACAAACCTGTTGT+TGG + chr5.2:26919863-26919882 None:intergenic 40.0%
GCAGCTATTCATAAGGTCTT+TGG - chr5.2:26919702-26919721 MS.gene79009:CDS 40.0%
GTTGTTGGAGGGCAAAAATA+TGG + chr5.2:26919848-26919867 None:intergenic 40.0%
TACAGTCCAAATATGTGCCA+AGG + chr5.2:26920114-26920133 None:intergenic 40.0%
TCCCTCAAGATCTTCAAAGT+TGG - chr5.2:26920470-26920489 MS.gene79009:CDS 40.0%
TGAACAAACCTGTTGTTGGA+GGG + chr5.2:26919859-26919878 None:intergenic 40.0%
TGGGCAACAGAACCATAAAT+TGG + chr5.2:26919828-26919847 None:intergenic 40.0%
TGTAAGCCTTGGCACATATT+TGG - chr5.2:26920105-26920124 MS.gene79009:intron 40.0%
TTGAGGAGGAAATGTGTTAG+AGG - chr5.2:26919630-26919649 MS.gene79009:CDS 40.0%
TTGGTGTATTGTTGATGCAC+TGG - chr5.2:26920222-26920241 MS.gene79009:intron 40.0%
TTTCCTCCTCAAGAATTTGC+AGG + chr5.2:26919622-26919641 None:intergenic 40.0%
! ACAAAAGCATGATGGCATCA+AGG - chr5.2:26920146-26920165 MS.gene79009:intron 40.0%
! ACATGCTGGAATTTTCCATC+TGG + chr5.2:26920498-26920517 None:intergenic 40.0%
! TACATGAGCACTGTGTTGAT+TGG - chr5.2:26920285-26920304 MS.gene79009:intron 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG - chr5.2:26920480-26920499 MS.gene79009:CDS 40.0%
!! TATTTTTGCCCTCCAACAAC+AGG - chr5.2:26919848-26919867 MS.gene79009:CDS 40.0%
AAGAATTTGCAGGCTCCACA+AGG + chr5.2:26919612-26919631 None:intergenic 45.0%
ATGACAACATGCAACGACAG+TGG - chr5.2:26920707-26920726 MS.gene79009:CDS 45.0%
CGATGTCAATCTGTAAGCCT+TGG - chr5.2:26920094-26920113 MS.gene79009:intron 45.0%
CTGTCGTTGCATGTTGTCAT+AGG + chr5.2:26920707-26920726 None:intergenic 45.0%
CTTCACAACGATCAGTCACA+GGG + chr5.2:26919761-26919780 None:intergenic 45.0%
TGAGAGAACAAGCAGCTCAA+AGG - chr5.2:26920383-26920402 MS.gene79009:intron 45.0%
TGGGACTACAAACACTCTCA+TGG - chr5.2:26920582-26920601 MS.gene79009:CDS 45.0%
GAGCCTGCAAATTCTTGAGG+AGG - chr5.2:26919616-26919635 MS.gene79009:CDS 50.0%
GCTTCACAACGATCAGTCAC+AGG + chr5.2:26919762-26919781 None:intergenic 50.0%
GTGGAGCCTGCAAATTCTTG+AGG - chr5.2:26919613-26919632 MS.gene79009:CDS 50.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG - chr5.2:26919594-26919613 MS.gene79009:CDS 50.0%
CACAACGATCAGTCACAGGG+AGG + chr5.2:26919758-26919777 None:intergenic 55.0%
! CAGTCACAGGGAGGTGTGCG+AGG + chr5.2:26919749-26919768 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 26919588 26920741 26919588 ID=MS.gene79009
chr5.2 mRNA 26919588 26920741 26919588 ID=MS.gene79009.t1;Parent=MS.gene79009
chr5.2 exon 26920460 26920741 26920460 ID=MS.gene79009.t1.exon1;Parent=MS.gene79009.t1
chr5.2 CDS 26920460 26920741 26920460 ID=cds.MS.gene79009.t1;Parent=MS.gene79009.t1
chr5.2 exon 26919588 26919977 26919588 ID=MS.gene79009.t1.exon2;Parent=MS.gene79009.t1
chr5.2 CDS 26919588 26919977 26919588 ID=cds.MS.gene79009.t1;Parent=MS.gene79009.t1
Gene Sequence

>MS.gene79009

ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGGAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAAGTGCTACCCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTCATGTTTCAAAGCTCCTCGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGTTCTGTTGCCCATATTTTTGCCCTCCAACAACAGGTTTGTTCATCTCTCGTGATCTTAAACTGAAAACCCTAGATGGTATACGCTTACATTTTTTTTCTTCATAATTGCAAAGAAGAATTTAAATTAATTAACTAATTAACAAGAGTATCAAGGGTACTCCAGTTTATATAAGGGTACTCCAGTTTATATATAAAAAAGAGTCTACAACGACCAAAAAATCAATAGTAAGACCTAATACAATCAACATGACATAAACACGATGTCAATCTGTAAGCCTTGGCACATATTTGGACTGTATAAATATATTTGACAAAAGCATGATGGCATCAAGGTTTTGTTTAAGATTCAAAGTGTAGTTTTTGCCAAATTCGTGCAGTAAATACAATTGGTGTATTGTTGATGCACTGGTTTTAGTTTGTAATAAAATTTTGGCTATTAAAGAAAAAAATACATGAGCACTGTGTTGATTGGTCAATTTACTAATAAATGCATTTTCTTCTTCATGATCTTTGTAGGTGGTCAATTTGCAAGCACAGCTAGCTTTTCTGAGAGAACAAGCAGCTCAAAGGTGTCTCAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAATTTTGGAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCAGCATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTACAATGGGACTACAAACACTCTCATGGATCTAAACCCTATTGGAAACTATGAAAATTCAGGAACCCTATTGGAAGAAAGCATCTCATCATTTTCTACTTTTGATGAGCGATGTAATAATTCAATGTCCTATGACAACATGCAACGACAGTGGACCTATCAGTAA
Protein sequence

>MS.gene79009.t1

MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQSATHFAAIHKVFGASHVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGSVAHIFALQQQVVNLQAQLAFLREQAAQRCLNAPNSENPNEKNFGKPTNILPQDLQSWFQMENSSMCSQFLPDFSSSTNLSSTTQYYNGTTNTLMDLNPIGNYENSGTLLEESISSFSTFDERCNNSMSYDNMQRQWTYQ