AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79037

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79037.t1 MTR_6g007647 99.303 287 2 0 1 287 1 287 0.0 587
MS.gene79037.t1 MTR_6g007647 99.209 253 2 0 35 287 1 253 0.0 514
MS.gene79037.t1 MTR_5g038280 45.022 231 83 7 39 231 51 275 2.79e-45 155
MS.gene79037.t1 MTR_4g107650 38.869 283 113 9 1 228 1 278 1.38e-44 154
MS.gene79037.t1 MTR_8g469430 70.297 101 30 0 63 163 85 185 4.96e-42 146
MS.gene79037.t1 MTR_8g468210 52.482 141 55 3 22 162 44 172 1.91e-39 139
MS.gene79037.t1 MTR_8g089895 52.113 142 55 1 32 173 32 160 1.29e-38 138
MS.gene79037.t1 MTR_6g011610 62.162 111 41 1 52 162 82 191 2.81e-38 136
MS.gene79037.t1 MTR_6g011610 62.162 111 41 1 52 162 63 172 3.81e-38 135
MS.gene79037.t1 MTR_5g039000 57.031 128 47 1 43 162 45 172 6.13e-38 135
MS.gene79037.t1 MTR_3g080100 61.404 114 42 1 52 163 3 116 1.03e-36 130
MS.gene79037.t1 MTR_3g086790 62.264 106 40 0 66 171 59 164 1.30e-36 132
MS.gene79037.t1 MTR_3g080100 59.664 119 46 1 47 163 37 155 2.32e-36 130
MS.gene79037.t1 MTR_7g103340 58.824 102 35 1 66 167 62 156 6.28e-32 118
MS.gene79037.t1 MTR_7g010020 56.250 112 45 2 52 162 67 175 4.81e-31 117
MS.gene79037.t1 MTR_1g061660 55.882 102 38 1 66 167 58 152 1.04e-29 112
MS.gene79037.t1 MTR_8g026960 54.255 94 43 0 71 164 38 131 3.95e-29 111
MS.gene79037.t1 MTR_3g092150 57.143 91 39 0 69 159 40 130 1.51e-28 110
MS.gene79037.t1 MTR_5g019650 47.748 111 56 1 67 175 53 163 1.03e-22 94.0
MS.gene79037.t1 MTR_5g019680 48.182 110 48 2 67 174 53 155 3.99e-22 92.0
MS.gene79037.t1 MTR_1g017090 50.000 104 45 1 64 167 127 223 6.24e-21 90.5
MS.gene79037.t1 MTR_4g100550 48.148 108 47 2 52 159 107 205 6.29e-21 90.1
MS.gene79037.t1 MTR_4g084750 43.089 123 58 3 64 186 62 172 1.44e-19 84.7
MS.gene79037.t1 MTR_5g013010 40.260 154 88 3 54 205 125 276 1.70e-19 86.7
MS.gene79037.t1 MTR_4g097600 50.538 93 39 1 67 159 127 212 3.42e-19 85.5
MS.gene79037.t1 MTR_8g006705 50.538 93 39 1 67 159 146 231 4.33e-19 85.5
MS.gene79037.t1 MTR_7g093430 42.500 120 69 0 61 180 154 273 6.34e-19 85.1
MS.gene79037.t1 MTR_5g014890 49.462 93 40 1 67 159 123 208 2.14e-18 83.2
MS.gene79037.t1 MTR_2g061030 42.105 114 66 0 67 180 200 313 4.10e-18 83.2
MS.gene79037.t1 MTR_3g103590 42.593 108 61 1 67 174 145 251 8.63e-18 82.0
MS.gene79037.t1 MTR_1g054285 40.833 120 71 0 61 180 148 267 1.07e-17 81.6
MS.gene79037.t1 MTR_4g126900 47.778 90 40 1 70 159 91 173 2.35e-17 79.3
MS.gene79037.t1 MTR_5g013010 55.385 65 27 1 54 118 125 187 8.55e-14 69.3
MS.gene79037.t1 MTR_2g038625 43.011 93 46 1 67 159 82 167 2.44e-13 68.2
MS.gene79037.t1 MTR_2g038580 43.011 93 46 1 67 159 82 167 2.44e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79037.t1 AT3G01470 57.143 287 100 8 1 281 1 270 2.20e-97 287
MS.gene79037.t1 AT5G65310 60.909 110 43 0 64 173 51 160 2.20e-38 137
MS.gene79037.t1 AT5G65310 60.909 110 43 0 64 173 69 178 2.87e-38 137
MS.gene79037.t1 AT2G22430 68.367 98 31 0 66 163 61 158 3.69e-38 137
MS.gene79037.t1 AT4G40060 49.315 146 67 1 53 191 45 190 5.23e-38 136
MS.gene79037.t1 AT1G69780 50.355 141 62 2 56 188 72 212 7.57e-38 135
MS.gene79037.t1 AT5G15150 70.213 94 28 0 66 159 114 207 1.06e-37 135
MS.gene79037.t1 AT3G01220 65.979 97 33 0 66 162 86 182 1.58e-35 129
MS.gene79037.t1 AT1G27045 62.000 100 38 0 67 166 25 124 6.26e-33 119
MS.gene79037.t1 AT1G27045 62.000 100 38 0 67 166 25 124 6.26e-33 119
MS.gene79037.t1 AT1G27045 62.000 100 38 0 67 166 17 116 6.98e-33 119
MS.gene79037.t1 AT1G27045 62.000 100 38 0 67 166 68 167 8.04e-33 120
MS.gene79037.t1 AT1G26960 47.297 148 69 3 29 173 36 177 1.43e-32 120
MS.gene79037.t1 AT2G46680 51.961 102 49 0 68 169 33 134 6.91e-31 116
MS.gene79037.t1 AT1G27045 62.766 94 35 0 67 160 68 161 8.52e-31 116
MS.gene79037.t1 AT3G61890 53.684 95 44 0 70 164 33 127 2.02e-30 114
MS.gene79037.t1 AT2G46680 55.556 90 40 0 68 157 33 122 2.97e-29 112
MS.gene79037.t1 AT4G36740 56.701 97 35 1 67 163 55 144 9.25e-28 107
MS.gene79037.t1 AT4G36740 56.701 97 35 1 67 163 56 145 9.57e-28 107
MS.gene79037.t1 AT5G03790 55.914 93 34 1 67 159 77 162 5.35e-26 102
MS.gene79037.t1 AT5G03790 53.465 101 40 1 67 167 77 170 5.99e-26 102
MS.gene79037.t1 AT2G18550 54.639 97 37 1 67 163 61 150 7.05e-26 102
MS.gene79037.t1 AT5G66700 49.524 105 46 1 67 164 71 175 2.46e-24 98.6
MS.gene79037.t1 AT2G36610 45.902 122 43 3 66 179 70 176 3.28e-24 97.1
MS.gene79037.t1 AT5G53980 45.455 99 54 0 58 156 2 100 3.11e-20 85.5
MS.gene79037.t1 AT4G17460 47.115 104 48 1 56 159 124 220 5.06e-19 85.1
MS.gene79037.t1 AT2G22800 38.710 124 73 1 58 178 101 224 5.61e-19 84.7
MS.gene79037.t1 AT5G06710 42.500 120 69 0 61 180 184 303 9.39e-19 85.1
MS.gene79037.t1 AT5G47370 44.348 115 52 2 50 159 108 215 2.23e-18 83.6
MS.gene79037.t1 AT2G01430 47.115 104 45 2 56 156 125 221 2.36e-18 83.2
MS.gene79037.t1 AT4G37790 44.231 104 51 1 56 159 115 211 2.27e-17 80.5
MS.gene79037.t1 AT3G60390 47.917 96 43 1 64 159 159 247 4.05e-17 80.5
MS.gene79037.t1 AT2G44910 48.387 93 41 1 67 159 163 248 4.21e-17 80.5
MS.gene79037.t1 AT4G16780 46.237 93 43 1 67 159 129 214 4.78e-17 79.7
MS.gene79037.t1 AT2G01430 52.239 67 29 1 56 119 125 191 1.36e-14 71.6
MS.gene79037.t1 AT1G70920 46.237 93 43 1 67 159 69 154 3.60e-14 70.1
MS.gene79037.t1 AT1G70920 46.591 88 47 0 67 154 39 126 3.98e-14 69.3
MS.gene79037.t1 AT5G06710 56.897 58 25 0 61 118 184 241 3.77e-13 68.6
MS.gene79037.t1 AT1G73360 34.653 101 50 2 66 164 32 118 5.59e-11 63.5

Find 72 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGAAGCTTCTCATTTA+AGG 0.097700 6.2:-3109224 None:intergenic
AACATGAACATGCTGTTTCT+TGG 0.235472 6.2:+3107073 MS.gene79037:CDS
ATCCTAGTTTCTTGGCCAAC+TGG 0.259750 6.2:-3108391 None:intergenic
TCTGATTGAACTCTTTCAAT+AGG 0.332216 6.2:-3109466 None:intergenic
TTTCTTGGAAATGCTGATCT+TGG 0.335848 6.2:+3107088 MS.gene79037:CDS
GTGGATGACCACATGAGTTC+TGG 0.344344 6.2:+3109334 MS.gene79037:CDS
TCAGTGCCTCTCCCTCTTCA+TGG 0.347311 6.2:-3109561 None:intergenic
AGGTTGCAATCCTAGTTTCT+TGG 0.355925 6.2:-3108399 None:intergenic
AACATATGATTCCATTACTA+AGG 0.392206 6.2:+3108526 MS.gene79037:CDS
GGAATCATATGTTGAAAGTA+GGG 0.419448 6.2:-3108516 None:intergenic
TTCAGAACCGTAGGGCTAGA+TGG 0.424104 6.2:+3108441 MS.gene79037:CDS
GTGAGGCGGCGCTTCTTCTC+CGG 0.438471 6.2:-3107811 None:intergenic
GAAGATGATGGGAGTGATGA+TGG 0.439088 6.2:+3109490 MS.gene79037:CDS
TGGAATCATATGTTGAAAGT+AGG 0.440148 6.2:-3108517 None:intergenic
TGTTGAAAGTAGGGAATCAT+AGG 0.441815 6.2:-3108507 None:intergenic
TTTCTCATTCTCCTTAGTAA+TGG 0.443693 6.2:-3108537 None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG 0.452751 6.2:+3108417 MS.gene79037:CDS
AAGAGGGAGAGGCACTGAAT+TGG 0.468712 6.2:+3109566 MS.gene79037:CDS
TCCTAGTTTCTTGGCCAACT+GGG 0.472188 6.2:-3108390 None:intergenic
AGGGAGAGGCACTGAATTGG+TGG 0.476724 6.2:+3109569 MS.gene79037:CDS
TCCTCATCATACAGTTCATC+CGG 0.477560 6.2:-3107769 None:intergenic
TGAGCTATGTCCACTGGAAG+TGG 0.478436 6.2:-3109295 None:intergenic
GTTCAATCAGAGGAAGATGA+TGG 0.478448 6.2:+3109478 MS.gene79037:CDS
ACTAGGATTGCAACCTAGGC+AGG 0.478866 6.2:+3108406 MS.gene79037:CDS
AGAAACTAGGATTGCAACCT+AGG 0.487565 6.2:+3108402 MS.gene79037:CDS
CTGTATGGTTTCAGAACCGT+AGG 0.504508 6.2:+3108432 MS.gene79037:CDS
CACATGAGTTCTGGAAGCGT+TGG 0.505249 6.2:+3109343 MS.gene79037:CDS
TTTGATTCTTCTGCTTGTCG+TGG 0.507243 6.2:+3107046 MS.gene79037:CDS
ACCCAGTTGGCCAAGAAACT+AGG 0.526542 6.2:+3108389 MS.gene79037:CDS
AACAATGACACCAACGACAC+GGG 0.527406 6.2:-3109392 None:intergenic
TTGATTCTTCTGCTTGTCGT+GGG 0.527464 6.2:+3107047 MS.gene79037:CDS
TGATGAATAGGTACATATGT+TGG 0.530364 6.2:+3108322 MS.gene79037:intron
CATCCAGCATAGTTGTCAGC+TGG 0.530440 6.2:-3109436 None:intergenic
TTGTCTTCCATCTAGCCCTA+CGG 0.531725 6.2:-3108448 None:intergenic
TTTCCAGCTGACAACTATGC+TGG 0.536407 6.2:+3109433 MS.gene79037:CDS
GCGCCGCCTCACTTCCGAGC+AGG 0.539627 6.2:+3107822 MS.gene79037:CDS
AAGATGATGGGAGTGATGAT+GGG 0.542417 6.2:+3109491 MS.gene79037:CDS
GGAAGGTCAATGATGAGCAT+GGG 0.542750 6.2:+3107712 MS.gene79037:intron
TTCAATCAGAGGAAGATGAT+GGG 0.547251 6.2:+3109479 MS.gene79037:CDS
AAAATCTGAGCTATGTCCAC+TGG 0.550742 6.2:-3109301 None:intergenic
AGGAAGGTCAATGATGAGCA+TGG 0.567797 6.2:+3107711 MS.gene79037:intron
GAGACCTTTCTTTAGCTCAC+CGG 0.569954 6.2:+3107750 MS.gene79037:CDS
CAACAATGACACCAACGACA+CGG 0.575613 6.2:-3109393 None:intergenic
AACCATACAGCCACCTGCCT+AGG 0.579439 6.2:-3108419 None:intergenic
TATGTTGGAGAAGAGCTTTG+AGG 0.579800 6.2:+3108337 MS.gene79037:CDS
AGGCAAGAAACCAACCTGCT+CGG 0.580249 6.2:-3107836 None:intergenic
GGGAGAGGCACTGAATTGGT+GGG 0.586237 6.2:+3109570 MS.gene79037:CDS
TCATCCGGTGAGCTAAAGAA+AGG 0.588529 6.2:-3107754 None:intergenic
ACATAACCATGAAGAGGGAG+AGG 0.603541 6.2:+3109555 MS.gene79037:CDS
AACCAACCTGCTCGGAAGTG+AGG 0.608175 6.2:-3107828 None:intergenic
GAAAGCTGATCCACTTCCAG+TGG 0.611490 6.2:+3109285 MS.gene79037:CDS
AGAACAAACTTGAGCCAGAG+AGG 0.615094 6.2:+3108363 MS.gene79037:CDS
CAACCTGCTCGGAAGTGAGG+CGG 0.622855 6.2:-3107825 None:intergenic
GAAGGTCAATGATGAGCATG+GGG 0.623217 6.2:+3107713 MS.gene79037:CDS
ACAATGACACCAACGACACG+GGG 0.624556 6.2:-3109391 None:intergenic
GCCAGAGAGGAAAACCCAGT+TGG 0.627216 6.2:+3108376 MS.gene79037:CDS
TGAGCAACATAACCATGAAG+AGG 0.628182 6.2:+3109549 MS.gene79037:CDS
GAATGAGAAACTCAAATCTG+AGG 0.629755 6.2:+3108550 MS.gene79037:CDS
GGAGAGGCACTGAATTGGTG+GGG 0.631899 6.2:+3109571 MS.gene79037:CDS
AAGCGTTGGAAGTGCAGTGG+TGG 0.633588 6.2:+3109357 MS.gene79037:CDS
CAACGCTTCCAGAACTCATG+TGG 0.634732 6.2:-3109342 None:intergenic
GAGCAACATAACCATGAAGA+GGG 0.640168 6.2:+3109550 MS.gene79037:CDS
ACCGGATGAACTGTATGATG+AGG 0.641946 6.2:+3107768 MS.gene79037:CDS
TGACAACTATGCTGGATGTG+TGG 0.645273 6.2:+3109441 MS.gene79037:CDS
GTACTACGAAGAACAGTCAC+CGG 0.657008 6.2:+3107792 MS.gene79037:CDS
AGGATTGCAACCTAGGCAGG+TGG 0.665303 6.2:+3108409 MS.gene79037:CDS
TGGAAGCGTTGGAAGTGCAG+TGG 0.670661 6.2:+3109354 MS.gene79037:CDS
ATGATGGGAGTGATGATGGG+AGG 0.679048 6.2:+3109494 MS.gene79037:CDS
TATTGAAAGAGTTCAATCAG+AGG 0.686434 6.2:+3109468 MS.gene79037:CDS
TGTATGGTTTCAGAACCGTA+GGG 0.689319 6.2:+3108433 MS.gene79037:CDS
CAATGACACCAACGACACGG+GGG 0.756439 6.2:-3109390 None:intergenic
AAGGTCAATGATGAGCATGG+GGG 0.757009 6.2:+3107714 MS.gene79037:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATCAAATGTTTTTAA+TGG + chr6.2:3108628-3108647 MS.gene79037:intron 10.0%
!! TACAAACACTAATAAATAAA+TGG - chr6.2:3108078-3108097 None:intergenic 15.0%
!! AATATAGTGTAGAATCTTAT+GGG - chr6.2:3108956-3108975 None:intergenic 20.0%
!! ATATATGCAAATTGAGAATT+TGG + chr6.2:3108742-3108761 MS.gene79037:intron 20.0%
!! ATTAGTGTTATGCATTAAAA+AGG + chr6.2:3108779-3108798 MS.gene79037:intron 20.0%
!! TAATATAGTGTAGAATCTTA+TGG - chr6.2:3108957-3108976 None:intergenic 20.0%
!! TACAATCCAAAAAAACAAAA+TGG - chr6.2:3107155-3107174 None:intergenic 20.0%
!!! AATCAAATGTTTTTAATGGT+CGG + chr6.2:3108632-3108651 MS.gene79037:intron 20.0%
!!! CTTAATCTATTGAGTTTTTA+TGG + chr6.2:3107127-3107146 MS.gene79037:intron 20.0%
!!! GATTTGATTTGATTTGATTT+GGG + chr6.2:3107383-3107402 MS.gene79037:intron 20.0%
!!! TGATTTGATTTGATTTGATT+TGG + chr6.2:3107387-3107406 MS.gene79037:intron 20.0%
!!! TGTTTATTAGTTTTAGTGAT+TGG + chr6.2:3108117-3108136 MS.gene79037:intron 20.0%
!!! TTGATTTGAGTTTTTGTTAA+AGG + chr6.2:3107476-3107495 MS.gene79037:intron 20.0%
!!! TTTTTTGGATTGTAAATTGT+TGG + chr6.2:3107161-3107180 MS.gene79037:intron 20.0%
! AAACATATCCAAATTCATTC+AGG - chr6.2:3107863-3107882 None:intergenic 25.0%
! AAATTGTCTGTCAAAAGTTA+TGG + chr6.2:3108817-3108836 MS.gene79037:intron 25.0%
! AACATATGATTCCATTACTA+AGG + chr6.2:3108526-3108545 MS.gene79037:CDS 25.0%
! AATTGTCTGTCAAAAGTTAT+GGG + chr6.2:3108818-3108837 MS.gene79037:intron 25.0%
! ACCATAAAATAGTTAACAAG+TGG + chr6.2:3109148-3109167 MS.gene79037:intron 25.0%
! TGTTAAGAATGGTATTTGTT+TGG + chr6.2:3107209-3107228 MS.gene79037:intron 25.0%
! TTTGTGATTAACTAACTTTG+TGG + chr6.2:3108297-3108316 MS.gene79037:intron 25.0%
!!! AAATTGTTGGTTTTGTTGTT+TGG + chr6.2:3107174-3107193 MS.gene79037:intron 25.0%
!!! ACTAATGCGTTTTTTAAAAG+AGG + chr6.2:3109111-3109130 MS.gene79037:intron 25.0%
!!! ATGGTACCATTTTGTTTTTT+TGG + chr6.2:3107146-3107165 MS.gene79037:intron 25.0%
!!! CTAATGCGTTTTTTAAAAGA+GGG + chr6.2:3109112-3109131 MS.gene79037:intron 25.0%
!!! GAATTTTTTTGAATGAAAGC+AGG + chr6.2:3107691-3107710 MS.gene79037:intron 25.0%
!!! GAGATTTTCTTTTTTTGGTT+AGG + chr6.2:3107356-3107375 MS.gene79037:intron 25.0%
!!! TAATGCGTTTTTTAAAAGAG+GGG + chr6.2:3109113-3109132 MS.gene79037:intron 25.0%
!!! TCCACTTGTTAACTATTTTA+TGG - chr6.2:3109152-3109171 None:intergenic 25.0%
!!! TTAGTTTTAGTGATTGGTTA+AGG + chr6.2:3108123-3108142 MS.gene79037:intron 25.0%
!!! TTGATTTTATGAGTTGAGTT+AGG + chr6.2:3107314-3107333 MS.gene79037:intron 25.0%
!!! TTGCTTTGTTTTGTTAAGAA+TGG + chr6.2:3107198-3107217 MS.gene79037:intron 25.0%
!!! TTTGATTTGATTTGGGTTTT+TGG + chr6.2:3107395-3107414 MS.gene79037:intron 25.0%
AAATTTCCACTTACCAAAGA+AGG + chr6.2:3108902-3108921 MS.gene79037:intron 30.0%
AACTTGAAGCTTCTCATTTA+AGG - chr6.2:3109227-3109246 None:intergenic 30.0%
AACTTTGTGGTTTGATGAAT+AGG + chr6.2:3108310-3108329 MS.gene79037:intron 30.0%
AAGAATGGTATTTGTTTGGA+TGG + chr6.2:3107213-3107232 MS.gene79037:intron 30.0%
ACTTGATCGTGTATCAAATT+TGG + chr6.2:3107429-3107448 MS.gene79037:intron 30.0%
ATGCAATATGTGTGAAAATG+AGG + chr6.2:3107998-3108017 MS.gene79037:intron 30.0%
CTTGATCGTGTATCAAATTT+GGG + chr6.2:3107430-3107449 MS.gene79037:intron 30.0%
GGAATCATATGTTGAAAGTA+GGG - chr6.2:3108519-3108538 None:intergenic 30.0%
TATTGAAAGAGTTCAATCAG+AGG + chr6.2:3109468-3109487 MS.gene79037:CDS 30.0%
TCTGATTGAACTCTTTCAAT+AGG - chr6.2:3109469-3109488 None:intergenic 30.0%
TCTGTATAGGATAGAATTAG+TGG + chr6.2:3108849-3108868 MS.gene79037:intron 30.0%
TGATGAATAGGTACATATGT+TGG + chr6.2:3108322-3108341 MS.gene79037:intron 30.0%
TGCAATATGTGTGAAAATGA+GGG + chr6.2:3107999-3108018 MS.gene79037:intron 30.0%
TGGAATCATATGTTGAAAGT+AGG - chr6.2:3108520-3108539 None:intergenic 30.0%
TTTCTCATTCTCCTTAGTAA+TGG - chr6.2:3108540-3108559 None:intergenic 30.0%
! TGGAAATTTGCTTCTTATGA+TGG - chr6.2:3108891-3108910 None:intergenic 30.0%
! TTCGCATAGTTACTTTGAAA+AGG - chr6.2:3109038-3109057 None:intergenic 30.0%
! TTTTGTTAAAGGAAGCAACT+TGG + chr6.2:3107487-3107506 MS.gene79037:intron 30.0%
!! AAATGTTTTTAATGGTCGGA+CGG + chr6.2:3108636-3108655 MS.gene79037:intron 30.0%
!! TTTTAAAAGAGGGGTATGAA+AGG + chr6.2:3109122-3109141 MS.gene79037:intron 30.0%
!!! TTTTTTGAATGAAAGCAGGA+AGG + chr6.2:3107695-3107714 MS.gene79037:intron 30.0%
AAAACGAGTGTAAATTGACG+AGG + chr6.2:3107655-3107674 MS.gene79037:intron 35.0%
ACTTACCAAAGAAGGTGATT+AGG + chr6.2:3108910-3108929 MS.gene79037:intron 35.0%
ATATCCAAATTCATTCAGGC+AGG - chr6.2:3107859-3107878 None:intergenic 35.0%
ATCTCTCTCATCAATCTAGT+TGG - chr6.2:3108260-3108279 None:intergenic 35.0%
ATGGTATTTGTTTGGATGGT+TGG + chr6.2:3107217-3107236 MS.gene79037:intron 35.0%
CTTGGTTGTGCATCAAAATT+TGG + chr6.2:3107505-3107524 MS.gene79037:intron 35.0%
GAATGAGAAACTCAAATCTG+AGG + chr6.2:3108550-3108569 MS.gene79037:CDS 35.0%
TAATCACCTTCTTTGGTAAG+TGG - chr6.2:3108911-3108930 None:intergenic 35.0%
TAGTGTAGAATCTTATGGGT+AGG - chr6.2:3108952-3108971 None:intergenic 35.0%
TATTTGTTTGGATGGTTGGT+GGG + chr6.2:3107221-3107240 MS.gene79037:intron 35.0%
TGTTGAAAGTAGGGAATCAT+AGG - chr6.2:3108510-3108529 None:intergenic 35.0%
TTCAATCAGAGGAAGATGAT+GGG + chr6.2:3109479-3109498 MS.gene79037:CDS 35.0%
TTTCTTGGAAATGCTGATCT+TGG + chr6.2:3107088-3107107 MS.gene79037:CDS 35.0%
! ATGAGTTGAGTTAGGTCTTA+TGG + chr6.2:3107322-3107341 MS.gene79037:intron 35.0%
! ATGGGTTTGAGTTTCTGTAT+AGG + chr6.2:3108836-3108855 MS.gene79037:intron 35.0%
! CAACATGTTGACTATTTCAC+AGG + chr6.2:3109195-3109214 MS.gene79037:intron 35.0%
! GATTGGTTAAGGAGAAGTTT+AGG + chr6.2:3108134-3108153 MS.gene79037:intron 35.0%
! GGTGGGAGATTTTCTTTTTT+TGG + chr6.2:3107351-3107370 MS.gene79037:intron 35.0%
! TCAGCTTTCTTTTCTGACAA+AGG - chr6.2:3109274-3109293 None:intergenic 35.0%
!! AACATGAACATGCTGTTTCT+TGG + chr6.2:3107073-3107092 MS.gene79037:CDS 35.0%
AAAATCTGAGCTATGTCCAC+TGG - chr6.2:3109304-3109323 None:intergenic 40.0%
AGAAACTAGGATTGCAACCT+AGG + chr6.2:3108402-3108421 MS.gene79037:CDS 40.0%
AGGTGATTAGGAGCTATCAA+AGG + chr6.2:3108922-3108941 MS.gene79037:intron 40.0%
AGGTTGCAATCCTAGTTTCT+TGG - chr6.2:3108402-3108421 None:intergenic 40.0%
GAGCAACATAACCATGAAGA+GGG + chr6.2:3109550-3109569 MS.gene79037:CDS 40.0%
GGTGACTGAAAATTTCCAGT+AGG + chr6.2:3108178-3108197 MS.gene79037:intron 40.0%
GTATTTGTTTGGATGGTTGG+TGG + chr6.2:3107220-3107239 MS.gene79037:intron 40.0%
GTTCAATCAGAGGAAGATGA+TGG + chr6.2:3109478-3109497 MS.gene79037:CDS 40.0%
TAGCTCCTAATCACCTTCTT+TGG - chr6.2:3108918-3108937 None:intergenic 40.0%
TATGTTGGAGAAGAGCTTTG+AGG + chr6.2:3108337-3108356 MS.gene79037:CDS 40.0%
TCCTCATCATACAGTTCATC+CGG - chr6.2:3107772-3107791 None:intergenic 40.0%
TGAGCAACATAACCATGAAG+AGG + chr6.2:3109549-3109568 MS.gene79037:CDS 40.0%
TGATTAGGAGCTATCAAAGG+AGG + chr6.2:3108925-3108944 MS.gene79037:intron 40.0%
TGGTTAAGGAGAAGTTTAGG+TGG + chr6.2:3108137-3108156 MS.gene79037:intron 40.0%
TGTATGGTTTCAGAACCGTA+GGG + chr6.2:3108433-3108452 MS.gene79037:CDS 40.0%
TTATGCTGAACACCTTCACT+CGG - chr6.2:3107289-3107308 None:intergenic 40.0%
TTGATTCTTCTGCTTGTCGT+GGG + chr6.2:3107047-3107066 MS.gene79037:CDS 40.0%
TTTGATTCTTCTGCTTGTCG+TGG + chr6.2:3107046-3107065 MS.gene79037:CDS 40.0%
! AGCTCAGATTTTCAGCATCA+AGG + chr6.2:3109312-3109331 MS.gene79037:CDS 40.0%
! AGTTAGGTCTTATGGACAGA+TGG + chr6.2:3107330-3107349 MS.gene79037:intron 40.0%
! CATGTTGACTATTTCACAGG+TGG + chr6.2:3109198-3109217 MS.gene79037:intron 40.0%
! GAAATTTTCAGTCACCAGAG+AGG - chr6.2:3108174-3108193 None:intergenic 40.0%
! TAAAAGAGGGGTATGAAAGG+TGG + chr6.2:3109125-3109144 MS.gene79037:intron 40.0%
! TCAGATTTTCAGCATCAAGG+TGG + chr6.2:3109315-3109334 MS.gene79037:CDS 40.0%
!! AAAGGCTTTTTCTTCACACC+AGG - chr6.2:3109020-3109039 None:intergenic 40.0%
!! AAGATGATGGGAGTGATGAT+GGG + chr6.2:3109491-3109510 MS.gene79037:CDS 40.0%
!! AATGCTGATCTTGGTTTTCG+AGG + chr6.2:3107097-3107116 MS.gene79037:CDS 40.0%
AACAATGACACCAACGACAC+GGG - chr6.2:3109395-3109414 None:intergenic 45.0%
AAGGTCAATGATGAGCATGG+GGG + chr6.2:3107714-3107733 MS.gene79037:CDS 45.0%
ACATAACCATGAAGAGGGAG+AGG + chr6.2:3109555-3109574 MS.gene79037:CDS 45.0%
ACCGGATGAACTGTATGATG+AGG + chr6.2:3107768-3107787 MS.gene79037:CDS 45.0%
AGAACAAACTTGAGCCAGAG+AGG + chr6.2:3108363-3108382 MS.gene79037:CDS 45.0%
AGGAAGGTCAATGATGAGCA+TGG + chr6.2:3107711-3107730 MS.gene79037:intron 45.0%
ATCCTAGTTTCTTGGCCAAC+TGG - chr6.2:3108394-3108413 None:intergenic 45.0%
CAACAATGACACCAACGACA+CGG - chr6.2:3109396-3109415 None:intergenic 45.0%
CACACACAACTGAGAAGTTC+AGG + chr6.2:3107256-3107275 MS.gene79037:intron 45.0%
CTCAGTTGTGTGTGAGTTTC+AGG - chr6.2:3107250-3107269 None:intergenic 45.0%
CTGTATGGTTTCAGAACCGT+AGG + chr6.2:3108432-3108451 MS.gene79037:CDS 45.0%
CTTGCCTGCCTGAATGAATT+TGG + chr6.2:3107852-3107871 MS.gene79037:intron 45.0%
GAAGGTCAATGATGAGCATG+GGG + chr6.2:3107713-3107732 MS.gene79037:CDS 45.0%
GGAAGGTCAATGATGAGCAT+GGG + chr6.2:3107712-3107731 MS.gene79037:intron 45.0%
GTACTACGAAGAACAGTCAC+CGG + chr6.2:3107792-3107811 MS.gene79037:CDS 45.0%
TAGGATCGAGTAAGACTGGT+TGG + chr6.2:3108197-3108216 MS.gene79037:intron 45.0%
TATGCTGAACACCTTCACTC+GGG - chr6.2:3107288-3107307 None:intergenic 45.0%
TCAGTCACCAGAGAGGATTT+GGG - chr6.2:3108167-3108186 None:intergenic 45.0%
TCATCCGGTGAGCTAAAGAA+AGG - chr6.2:3107757-3107776 None:intergenic 45.0%
TCCTAGTTTCTTGGCCAACT+GGG - chr6.2:3108393-3108412 None:intergenic 45.0%
TGACAACTATGCTGGATGTG+TGG + chr6.2:3109441-3109460 MS.gene79037:CDS 45.0%
TTCAGTCACCAGAGAGGATT+TGG - chr6.2:3108168-3108187 None:intergenic 45.0%
TTGTCTTCCATCTAGCCCTA+CGG - chr6.2:3108451-3108470 None:intergenic 45.0%
TTTCCAGCTGACAACTATGC+TGG + chr6.2:3109433-3109452 MS.gene79037:CDS 45.0%
! AGGATCGAGTAAGACTGGTT+GGG + chr6.2:3108198-3108217 MS.gene79037:intron 45.0%
! AGGTCTTATGGACAGATGGT+GGG + chr6.2:3107334-3107353 MS.gene79037:intron 45.0%
! CTTTTTCTTCACACCAGGTG+GGG - chr6.2:3109015-3109034 None:intergenic 45.0%
! GAGACCTTTCTTTAGCTCAC+CGG + chr6.2:3107750-3107769 MS.gene79037:CDS 45.0%
! TAGGTCTTATGGACAGATGG+TGG + chr6.2:3107333-3107352 MS.gene79037:intron 45.0%
!! GAAGATGATGGGAGTGATGA+TGG + chr6.2:3109490-3109509 MS.gene79037:CDS 45.0%
!! GCTTTTTCTTCACACCAGGT+GGG - chr6.2:3109016-3109035 None:intergenic 45.0%
ACAATGACACCAACGACACG+GGG - chr6.2:3109394-3109413 None:intergenic 50.0%
ACCCAGTTGGCCAAGAAACT+AGG + chr6.2:3108389-3108408 MS.gene79037:CDS 50.0%
ACTAGGATTGCAACCTAGGC+AGG + chr6.2:3108406-3108425 MS.gene79037:CDS 50.0%
AGGCAAGAAACCAACCTGCT+CGG - chr6.2:3107839-3107858 None:intergenic 50.0%
CAACGCTTCCAGAACTCATG+TGG - chr6.2:3109345-3109364 None:intergenic 50.0%
CATCCAGCATAGTTGTCAGC+TGG - chr6.2:3109439-3109458 None:intergenic 50.0%
CCAGTAGGATCGAGTAAGAC+TGG + chr6.2:3108193-3108212 MS.gene79037:intron 50.0%
CCAGTCTTACTCGATCCTAC+TGG - chr6.2:3108196-3108215 None:intergenic 50.0%
GAAAGCTGATCCACTTCCAG+TGG + chr6.2:3109285-3109304 MS.gene79037:CDS 50.0%
GTGGATGACCACATGAGTTC+TGG + chr6.2:3109334-3109353 MS.gene79037:CDS 50.0%
TCAATGATGAGCATGGGGGA+AGG + chr6.2:3107718-3107737 MS.gene79037:CDS 50.0%
TGAGCTATGTCCACTGGAAG+TGG - chr6.2:3109298-3109317 None:intergenic 50.0%
TGGAGAACCCAAATCCTCTC+TGG + chr6.2:3108157-3108176 MS.gene79037:intron 50.0%
TTCAGAACCGTAGGGCTAGA+TGG + chr6.2:3108441-3108460 MS.gene79037:CDS 50.0%
!! AAGAGGGAGAGGCACTGAAT+TGG + chr6.2:3109566-3109585 MS.gene79037:CDS 50.0%
!! ATGATGGGAGTGATGATGGG+AGG + chr6.2:3109494-3109513 MS.gene79037:CDS 50.0%
!! CACATGAGTTCTGGAAGCGT+TGG + chr6.2:3109343-3109362 MS.gene79037:CDS 50.0%
!! GGCTTTTTCTTCACACCAGG+TGG - chr6.2:3109017-3109036 None:intergenic 50.0%
AACCAACCTGCTCGGAAGTG+AGG - chr6.2:3107831-3107850 None:intergenic 55.0%
AACCATACAGCCACCTGCCT+AGG - chr6.2:3108422-3108441 None:intergenic 55.0%
AACCTAGGCAGGTGGCTGTA+TGG + chr6.2:3108417-3108436 MS.gene79037:CDS 55.0%
AGGATTGCAACCTAGGCAGG+TGG + chr6.2:3108409-3108428 MS.gene79037:CDS 55.0%
CAATGACACCAACGACACGG+GGG - chr6.2:3109393-3109412 None:intergenic 55.0%
GCATGGGGGAAGGCTCAAAA+AGG + chr6.2:3107728-3107747 MS.gene79037:CDS 55.0%
GCCAGAGAGGAAAACCCAGT+TGG + chr6.2:3108376-3108395 MS.gene79037:CDS 55.0%
TCAGGTTCGAACCCGAGTGA+AGG + chr6.2:3107274-3107293 MS.gene79037:intron 55.0%
TCAGTGCCTCTCCCTCTTCA+TGG - chr6.2:3109564-3109583 None:intergenic 55.0%
! CATCTGTTCTGAACCCCACC+TGG + chr6.2:3108999-3109018 MS.gene79037:intron 55.0%
! GCCAACTGGGTTTTCCTCTC+TGG - chr6.2:3108380-3108399 None:intergenic 55.0%
!! AAGCGTTGGAAGTGCAGTGG+TGG + chr6.2:3109357-3109376 MS.gene79037:CDS 55.0%
!! AGGGAGAGGCACTGAATTGG+TGG + chr6.2:3109569-3109588 MS.gene79037:CDS 55.0%
!! GGAGAGGCACTGAATTGGTG+GGG + chr6.2:3109571-3109590 MS.gene79037:CDS 55.0%
!! GGGAGAGGCACTGAATTGGT+GGG + chr6.2:3109570-3109589 MS.gene79037:CDS 55.0%
!! TGGAAGCGTTGGAAGTGCAG+TGG + chr6.2:3109354-3109373 MS.gene79037:CDS 55.0%
CAACCTGCTCGGAAGTGAGG+CGG - chr6.2:3107828-3107847 None:intergenic 60.0%
CGCCTCACTTCCGAGCAGGT+TGG + chr6.2:3107826-3107845 MS.gene79037:intron 65.0%
GAGAGTAGCCCCCGTGTCGT+TGG + chr6.2:3109382-3109401 MS.gene79037:CDS 65.0%
GTGAGGCGGCGCTTCTTCTC+CGG - chr6.2:3107814-3107833 None:intergenic 65.0%
GCGCCGCCTCACTTCCGAGC+AGG + chr6.2:3107822-3107841 MS.gene79037:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 3107025 3109615 3107025 ID=MS.gene79037
chr6.2 mRNA 3107025 3109615 3107025 ID=MS.gene79037.t1;Parent=MS.gene79037
chr6.2 exon 3107025 3107118 3107025 ID=MS.gene79037.t1.exon1;Parent=MS.gene79037.t1
chr6.2 CDS 3107025 3107118 3107025 ID=cds.MS.gene79037.t1;Parent=MS.gene79037.t1
chr6.2 exon 3107713 3107843 3107713 ID=MS.gene79037.t1.exon2;Parent=MS.gene79037.t1
chr6.2 CDS 3107713 3107843 3107713 ID=cds.MS.gene79037.t1;Parent=MS.gene79037.t1
chr6.2 exon 3108332 3108571 3108332 ID=MS.gene79037.t1.exon3;Parent=MS.gene79037.t1
chr6.2 CDS 3108332 3108571 3108332 ID=cds.MS.gene79037.t1;Parent=MS.gene79037.t1
chr6.2 exon 3109217 3109615 3109217 ID=MS.gene79037.t1.exon4;Parent=MS.gene79037.t1
chr6.2 CDS 3109217 3109615 3109217 ID=cds.MS.gene79037.t1;Parent=MS.gene79037.t1
Gene Sequence

>MS.gene79037

ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGTATTTTTCTTAATCTATTGAGTTTTTATGGTACCATTTTGTTTTTTTGGATTGTAAATTGTTGGTTTTGTTGTTTGGTTTGCTTTGTTTTGTTAAGAATGGTATTTGTTTGGATGGTTGGTGGGACACCTGAAACTCACACACAACTGAGAAGTTCAGGTTCGAACCCGAGTGAAGGTGTTCAGCATAACAGTATTGATTTTATGAGTTGAGTTAGGTCTTATGGACAGATGGTGGGAGATTTTCTTTTTTTGGTTAGGAAAAGATTTGATTTGATTTGATTTGATTTGGGTTTTTGGTAAAAGAAGCAACTTGATCGTGTATCAAATTTGGGCACACAAAAAAAGAAGATATGATTTGATTTGAGTTTTTGTTAAAGGAAGCAACTTGGTTGTGCATCAAAATTTGGCTATGAGAAATAATGAATTAGAATTTTTCTCTCTTTTTTTTTAAAAAATTTTGTTTTTTGTTTATGATTTTGTGTTTGTAAGTGTTATGATTTGTGATATAGATGTTGTTTGAAGTGTTTGATGTAGAAAACGAGTGTAAATTGACGAGGTTGTTAATTTTTTGAATTTTTTTGAATGAAAGCAGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTTGGTTTCTTGCCTGCCTGAATGAATTTGGATATGTTTTTCATTATCTTGTGCTGATACTCTAACTATGAAAGAATCTATATTAATTTTTGTCAATTTTTCTCGTCAGCAATTAGTCTCACGTCTAATATGATATGTGTTTAGCTTTTAATTAATGCAATATGTGTGAAAATGAGGGTTGACTTTCAATAGCAATTTGATTTTGTAGTCATCAATTGATTGATTTTGAAACCATTTATTTATTAGTGTTTGTATATCAAAACTACATGTACTTGTTTATTAGTTTTAGTGATTGGTTAAGGAGAAGTTTAGGTGGAGAACCCAAATCCTCTCTGGTGACTGAAAATTTCCAGTAGGATCGAGTAAGACTGGTTGGGATATAATGATAATATTTGTACAAGTATTATATTCAACCAACTAGATTGATGAGAGAGATATTACATGATATTAGTTTTTGTGATTAACTAACTTTGTGGTTTGATGAATAGGTACATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGGTATTTAACTACATATGTATTGTATAATCAAATGTGTGCATTTATAGTAGTTACGATTAAAATCAAATGTTTTTAATGGTCGGACGGTTATGATTGATCGACAACGTAAAAAAATTGTATATAAATTAAGTACTGTACTATTACTATTATTAGTTAGATTTTGTTATGCTATATATGCAAATTGAGAATTTGGTGAAGTCTGAAATGATTAGTGTTATGCATTAAAAAGGTAATGAATAGAATATAAATTGTCTGTCAAAAGTTATGGGTTTGAGTTTCTGTATAGGATAGAATTAGTGGCTTTACAATCAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTAGGAGCTATCAAAGGAGGTCCTACCCATAAGATTCTACACTATATTAATCACATACTAACAAAGAGTAGCATCTGTTCTGAACCCCACCTGGTGTGAAGAAAAAGCCTTTTCAAAGTAACTATGCGAATATACTTTTCTAGAGTTCTAAAAATATGCTTAAAACTTCATTTTGTGATAAAGACTAATGCGTTTTTTAAAAGAGGGGTATGAAAGGTGGACCATAAAATAGTTAACAAGTGGAAATTGAAGTATTGATTATCTTAACAACATGTTGACTATTTCACAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA
Protein sequence

>MS.gene79037.t1

MESGRLYFDSSACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA