Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79059.t1 | RHN66168.1 | 99.5 | 382 | 2 | 0 | 1 | 382 | 1 | 382 | 3.70E-206 | 727.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79059.t1 | E0X9N4 | 54.9 | 319 | 129 | 7 | 1 | 307 | 1 | 316 | 1.1e-73 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79059.t1 | G7IWL7 | 99.5 | 382 | 2 | 0 | 1 | 382 | 1 | 382 | 2.7e-206 | 727.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79059.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79059.t1 | MTR_3g028170 | 97.320 | 485 | 8 | 2 | 1 | 484 | 1 | 481 | 0.0 | 978 |
| MS.gene79059.t1 | MTR_3g028190 | 53.191 | 329 | 125 | 8 | 1 | 307 | 1 | 322 | 1.53e-107 | 324 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79059.t1 | AT3G08505 | 50.482 | 311 | 127 | 7 | 1 | 307 | 1 | 288 | 3.58e-99 | 301 |
| MS.gene79059.t1 | AT3G08505 | 50.482 | 311 | 127 | 7 | 1 | 307 | 1 | 288 | 3.58e-99 | 301 |
| MS.gene79059.t1 | AT3G08505 | 50.482 | 311 | 127 | 7 | 1 | 307 | 1 | 288 | 3.58e-99 | 301 |
Find 107 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAAGAGGCCATGGTTTC+TGG | 0.092914 | 3.1:+20342009 | MS.gene79059:CDS |
| AAGCCATCAGAATGTAAATT+TGG | 0.151196 | 3.1:+20338361 | MS.gene79059:CDS |
| ATGCTAAAGTAGCATCAAAT+TGG | 0.241620 | 3.1:+20337993 | MS.gene79059:CDS |
| CCTGCATCCTACTGATAAAA+AGG | 0.246259 | 3.1:+20338225 | MS.gene79059:CDS |
| GTTTCTGGGATAGATGATTT+TGG | 0.250360 | 3.1:+20342024 | MS.gene79059:CDS |
| CAGAAAGGGTCTTGTGCTTA+TGG | 0.259648 | 3.1:+20337881 | MS.gene79059:CDS |
| GATTCGCTGGCTGGCGGTTC+AGG | 0.263297 | 3.1:+20341823 | MS.gene79059:CDS |
| AGCATCATCTTCAGCATCTA+TGG | 0.292528 | 3.1:+20337940 | MS.gene79059:CDS |
| TTTGAGGACTTGTGACAAAA+AGG | 0.300862 | 3.1:+20338261 | MS.gene79059:CDS |
| GCTCTTGGGATGGATGCTTT+TGG | 0.301364 | 3.1:+20341928 | MS.gene79059:CDS |
| TTGTCATTCCAAGTGGTATT+TGG | 0.301592 | 3.1:+20338524 | MS.gene79059:CDS |
| TGGCGGTTCAGGTCCTTGTT+TGG | 0.314287 | 3.1:+20341834 | MS.gene79059:CDS |
| GGCGGTTCAGGTCCTTGTTT+GGG | 0.319796 | 3.1:+20341835 | MS.gene79059:CDS |
| GGAAATGGAAATTGTCCATT+TGG | 0.321258 | 3.1:+20338731 | MS.gene79059:CDS |
| TCGTCATCGTCATCGTCATC+AGG | 0.347305 | 3.1:-20341952 | None:intergenic |
| ATGCAAGAGGCCATGGCTCT+TGG | 0.356930 | 3.1:+20341913 | MS.gene79059:CDS |
| CAGAAAGCATGATCACATTC+TGG | 0.360354 | 3.1:-20338391 | None:intergenic |
| TATGATAGTTTGCGGCAAAC+AGG | 0.366308 | 3.1:-20338499 | None:intergenic |
| GAAATGGAAATTGTCCATTT+GGG | 0.373127 | 3.1:+20338732 | MS.gene79059:CDS |
| CGATTTCCATTGCAGAGGTT+GGG | 0.374375 | 3.1:-20338447 | None:intergenic |
| CCCTTTACGCCACGCTTGTC+AGG | 0.376758 | 3.1:-20338043 | None:intergenic |
| CCTGACAAGCGTGGCGTAAA+GGG | 0.379956 | 3.1:+20338043 | MS.gene79059:CDS |
| GTTTGTCATGTATCCGCAAT+TGG | 0.381206 | 3.1:+20338413 | MS.gene79059:CDS |
| AAATTTACATTCTGATGGCT+TGG | 0.402203 | 3.1:-20338359 | None:intergenic |
| TGCAAGAGGCCATGGTTTCT+GGG | 0.408782 | 3.1:+20342010 | MS.gene79059:CDS |
| AATTTACATTCTGATGGCTT+GGG | 0.409156 | 3.1:-20338358 | None:intergenic |
| TGCAAGAGGCCATGGCTCTT+GGG | 0.417374 | 3.1:+20341914 | MS.gene79059:CDS |
| AATGATGATGCATTCTCATA+TGG | 0.418914 | 3.1:+20342095 | MS.gene79059:CDS |
| TCAATTCCATGAAAATCATC+AGG | 0.425647 | 3.1:-20342048 | None:intergenic |
| AGCCATCAGAATGTAAATTT+GGG | 0.430807 | 3.1:+20338362 | MS.gene79059:CDS |
| ACCTGACAAGCGTGGCGTAA+AGG | 0.437739 | 3.1:+20338042 | MS.gene79059:CDS |
| GATAATGCCATCATCTCAAA+TGG | 0.443626 | 3.1:-20341799 | None:intergenic |
| AAAATCTCACCATGTCCAAC+AGG | 0.444234 | 3.1:+20336898 | None:intergenic |
| CCGATTTCCATTGCAGAGGT+TGG | 0.450187 | 3.1:-20338448 | None:intergenic |
| GATTCAGACGATGAGGATGA+TGG | 0.450779 | 3.1:+20341865 | MS.gene79059:CDS |
| CCAACCTCTGCAATGGAAAT+CGG | 0.452415 | 3.1:+20338448 | MS.gene79059:CDS |
| TTTGCTCTTATTATCAGAAA+GGG | 0.457240 | 3.1:+20337867 | MS.gene79059:CDS |
| ACATGTCATGCATATCGAAA+TGG | 0.462288 | 3.1:-20341693 | None:intergenic |
| TGCTGCTATGCAAGAGGCCA+TGG | 0.469668 | 3.1:+20341906 | MS.gene79059:CDS |
| ATTTGCTCTTATTATCAGAA+AGG | 0.469932 | 3.1:+20337866 | MS.gene79059:CDS |
| TGCTAAAGTAGCATCAAATT+GGG | 0.470480 | 3.1:+20337994 | MS.gene79059:CDS |
| GGGTTTACAACGCAAGCATC+AGG | 0.478209 | 3.1:+20338063 | MS.gene79059:CDS |
| AACCCAAATTTACATTCTGA+TGG | 0.489492 | 3.1:-20338364 | None:intergenic |
| GCATTATCAGATTCGCTGGC+TGG | 0.489570 | 3.1:+20341814 | MS.gene79059:CDS |
| AATGGATCCATTTGAGATGA+TGG | 0.491467 | 3.1:+20341792 | MS.gene79059:CDS |
| GATTTCCATTGCAGAGGTTG+GGG | 0.493235 | 3.1:-20338446 | None:intergenic |
| TAGAAACAGCTAGCCCCAAA+TGG | 0.494880 | 3.1:-20338746 | None:intergenic |
| GGCTGCTATGCAAGAGGCCA+TGG | 0.495488 | 3.1:+20342002 | MS.gene79059:CDS |
| TGGTCTAGCACTACCAGTAC+TGG | 0.497170 | 3.1:-20338107 | None:intergenic |
| TGTCTCCATGTGTATGAGCC+AGG | 0.499940 | 3.1:-20341640 | None:intergenic |
| TCCTCATCGTCTGAATCAAA+AGG | 0.507460 | 3.1:-20341859 | None:intergenic |
| GAAGGAACCTTTGTAACCTT+CGG | 0.509713 | 3.1:-20338019 | None:intergenic |
| AGGGCAGGTTCTCACTGTAT+TGG | 0.515799 | 3.1:-20338479 | None:intergenic |
| GATGGCATTATCAGATTCGC+TGG | 0.519486 | 3.1:+20341810 | MS.gene79059:CDS |
| TAGTTTGCGGCAAACAGGGC+AGG | 0.521329 | 3.1:-20338494 | None:intergenic |
| TGACAAAATATGATAGTTTG+CGG | 0.523339 | 3.1:-20338507 | None:intergenic |
| TTCAGATTCTGCTGTGCATG+TGG | 0.531316 | 3.1:+20337964 | MS.gene79059:CDS |
| AAAATCTGAGTCCCTCATGA+TGG | 0.533480 | 3.1:-20341761 | None:intergenic |
| TGGGGCTAGCTGTTTCTACA+AGG | 0.535393 | 3.1:+20338751 | MS.gene79059:CDS |
| ATTCAGACGATGAGGATGAT+GGG | 0.536703 | 3.1:+20341866 | MS.gene79059:CDS |
| GCGCGAGGCGTATGTTTGAA+AGG | 0.542739 | 3.1:+20337538 | MS.gene79059:CDS |
| TTTGCTGCTGCCAACTGCCC+CGG | 0.543300 | 3.1:+20338151 | MS.gene79059:CDS |
| TTTCAGCATACAGTGAAGCC+TGG | 0.555178 | 3.1:+20341622 | MS.gene79059:intron |
| ATGATAGTTTGCGGCAAACA+GGG | 0.556192 | 3.1:-20338498 | None:intergenic |
| GATATCAAAGCTGCATCCAT+AGG | 0.558891 | 3.1:-20342072 | None:intergenic |
| TCAAATTGCTGCTATGCAAG+AGG | 0.561508 | 3.1:+20341900 | MS.gene79059:CDS |
| AGAACATCCACCGGGGCAGT+TGG | 0.563489 | 3.1:-20338161 | None:intergenic |
| TGGTATTTGGTTTACTACAA+AGG | 0.568402 | 3.1:+20338537 | MS.gene79059:CDS |
| AGCATCAAATTGGGTTCCGA+AGG | 0.575611 | 3.1:+20338003 | MS.gene79059:CDS |
| TGCGTTGAGGTGGTGGCCTG+CGG | 0.577755 | 3.1:-20341663 | None:intergenic |
| TAGTGCCCCAACCTCTGCAA+TGG | 0.580807 | 3.1:+20338441 | MS.gene79059:CDS |
| TTTCGATATGCATGACATGT+TGG | 0.582133 | 3.1:+20341696 | MS.gene79059:CDS |
| TCGAATGGCTGCTATGCAAG+AGG | 0.583412 | 3.1:+20341996 | MS.gene79059:CDS |
| AAGATGATGCTTGAGAAGCT+CGG | 0.587317 | 3.1:-20337928 | None:intergenic |
| AGAGGCCATGGCTCTTGGGA+TGG | 0.587677 | 3.1:+20341918 | MS.gene79059:CDS |
| GGTCTTGTGCTTATGGTAGT+CGG | 0.588927 | 3.1:+20337888 | MS.gene79059:CDS |
| TTGGGTTCCGAAGGTTACAA+AGG | 0.589756 | 3.1:+20338012 | MS.gene79059:CDS |
| ACGCCACGCTTGTCAGGTGA+AGG | 0.590498 | 3.1:-20338037 | None:intergenic |
| GGTGGATGTTCTCGTATTCA+CGG | 0.596225 | 3.1:+20338172 | MS.gene79059:CDS |
| AGCATCCATCCCAAGAGCCA+TGG | 0.600499 | 3.1:-20341923 | None:intergenic |
| ATCATCTATCCCAGAAACCA+TGG | 0.600753 | 3.1:-20342019 | None:intergenic |
| TGAATACGAGAACATCCACC+GGG | 0.602886 | 3.1:-20338169 | None:intergenic |
| CGTCATCGTCATCGTCATCA+GGG | 0.603521 | 3.1:-20341951 | None:intergenic |
| TTATCAGATTCGCTGGCTGG+CGG | 0.606192 | 3.1:+20341817 | MS.gene79059:CDS |
| GCTGCTGCCAACTGCCCCGG+TGG | 0.606750 | 3.1:+20338154 | MS.gene79059:CDS |
| TGAAGCCTGGCTCATACACA+TGG | 0.611090 | 3.1:+20341635 | MS.gene79059:CDS |
| AAATGGAAATTGTCCATTTG+GGG | 0.614806 | 3.1:+20338733 | MS.gene79059:CDS |
| GATGTCGGTGAATCCAGTAC+TGG | 0.616230 | 3.1:+20338094 | MS.gene79059:CDS |
| ATAACTACAAGGCAAACTGC+AGG | 0.617185 | 3.1:+20338581 | MS.gene79059:CDS |
| CATGACATGTTGGATGTGCT+CGG | 0.619477 | 3.1:+20341706 | MS.gene79059:CDS |
| CATCAGGACTCTACCGATGT+CGG | 0.621122 | 3.1:+20338079 | MS.gene79059:CDS |
| GTAGTAAACCAAATACCACT+TGG | 0.621876 | 3.1:-20338532 | None:intergenic |
| GGAAATTATTGATAACTACA+AGG | 0.622897 | 3.1:+20338570 | MS.gene79059:CDS |
| GAATCAAAAGGACCCAAACA+AGG | 0.628395 | 3.1:-20341847 | None:intergenic |
| GGGCACTACTACGCCAATTG+CGG | 0.634177 | 3.1:-20338426 | None:intergenic |
| GTGAATACGAGAACATCCAC+CGG | 0.635675 | 3.1:-20338170 | None:intergenic |
| AGTACTGGATTCACCGACAT+CGG | 0.635922 | 3.1:-20338092 | None:intergenic |
| GGTGAGGTTGATCTATCAAG+TGG | 0.638628 | 3.1:+20341727 | MS.gene79059:CDS |
| ACTACCGATTTCCATTGCAG+AGG | 0.647818 | 3.1:-20338452 | None:intergenic |
| TGAGATTTACCTGTTGGACA+TGG | 0.648362 | 3.1:-20336907 | None:intergenic |
| CATACACATGGAGACACCGC+AGG | 0.651112 | 3.1:+20341647 | MS.gene79059:CDS |
| CAATTCCATGAAAATCATCA+GGG | 0.655793 | 3.1:-20342047 | None:intergenic |
| GTTCCTTCACCTGACAAGCG+TGG | 0.671133 | 3.1:+20338034 | MS.gene79059:CDS |
| TGACGATGACGATGACGATG+AGG | 0.681637 | 3.1:+20341957 | MS.gene79059:CDS |
| AGAAGAAGATGAAGATTACG+AGG | 0.692698 | 3.1:+20342125 | MS.gene79059:CDS |
| CATGTTGGATGTGCTCGGTG+AGG | 0.698239 | 3.1:+20341711 | MS.gene79059:CDS |
| GAATACGAGAACATCCACCG+GGG | 0.861616 | 3.1:-20338168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAATTTAATTAAAA+GGG | + | chr3.1:20341398-20341417 | MS.gene79059:intron | 0.0% |
| !! | TTTATAAAAATTTAATTAAA+AGG | + | chr3.1:20341397-20341416 | MS.gene79059:intron | 0.0% |
| !!! | ATTTTTAAAATTTAATTTTT+AGG | + | chr3.1:20337262-20337281 | MS.gene79059:intron | 0.0% |
| !!! | TTTTTAAAATTTAATTTTTA+GGG | + | chr3.1:20337263-20337282 | MS.gene79059:intron | 0.0% |
| !!! | TTTAGGTTAATTTAATTTTA+GGG | + | chr3.1:20337214-20337233 | MS.gene79059:intron | 10.0% |
| !! | AACAACATAAATAATCAAAT+GGG | - | chr3.1:20337046-20337065 | None:intergenic | 15.0% |
| !! | AATGCTATTACAATATTAAA+CGG | - | chr3.1:20340510-20340529 | None:intergenic | 15.0% |
| !! | TAACAACATAAATAATCAAA+TGG | - | chr3.1:20337047-20337066 | None:intergenic | 15.0% |
| !! | TATATTTATATTGTTCTTAC+TGG | + | chr3.1:20337823-20337842 | MS.gene79059:intron | 15.0% |
| !! | TCTCAAAAACTAATATAAAA+TGG | - | chr3.1:20341559-20341578 | None:intergenic | 15.0% |
| !! | TTACTAGTATAATACATTAT+TGG | + | chr3.1:20340396-20340415 | MS.gene79059:intron | 15.0% |
| !!! | ATCAAACATATTTTCAAAAA+TGG | - | chr3.1:20339776-20339795 | None:intergenic | 15.0% |
| !!! | GTTTAGGTTAATTTAATTTT+AGG | + | chr3.1:20337213-20337232 | MS.gene79059:intron | 15.0% |
| !!! | TTTTAGAAAAAAATTACCAA+GGG | - | chr3.1:20341372-20341391 | None:intergenic | 15.0% |
| !!! | TTTTATATTAGTTTTTGAGA+TGG | + | chr3.1:20341559-20341578 | MS.gene79059:intron | 15.0% |
| !! | AAATATAAAAGAAAGAGAGA+TGG | - | chr3.1:20338779-20338798 | None:intergenic | 20.0% |
| !! | AAATTCTGTTTGTAAATGTT+AGG | + | chr3.1:20337350-20337369 | MS.gene79059:intron | 20.0% |
| !! | AATCTCATCTAAAAAACTAA+AGG | + | chr3.1:20340174-20340193 | MS.gene79059:intron | 20.0% |
| !! | AATCTGAAAGGAAAAAAAAT+AGG | - | chr3.1:20338686-20338705 | None:intergenic | 20.0% |
| !! | ATATAAAGTAGAAAACACAT+TGG | - | chr3.1:20337808-20337827 | None:intergenic | 20.0% |
| !! | ATATAATACATATGTGTGTA+CGG | - | chr3.1:20339377-20339396 | None:intergenic | 20.0% |
| !! | ATCACGAATATAAATCATAT+TGG | - | chr3.1:20339903-20339922 | None:intergenic | 20.0% |
| !! | ATTAAAATAATACTGGTAGT+GGG | + | chr3.1:20340449-20340468 | MS.gene79059:intron | 20.0% |
| !! | ATTTCGGATTAAAATAATAC+TGG | + | chr3.1:20340442-20340461 | MS.gene79059:intron | 20.0% |
| !! | CCTAAAATACTATGAAATAT+CGG | + | chr3.1:20341468-20341487 | MS.gene79059:intron | 20.0% |
| !! | CTAAAATACTATGAAATATC+GGG | + | chr3.1:20341469-20341488 | MS.gene79059:intron | 20.0% |
| !! | GAAAAATATTATTAAGTCAG+TGG | + | chr3.1:20340544-20340563 | MS.gene79059:intron | 20.0% |
| !! | GTAAATGTAAATATTGTCTT+TGG | + | chr3.1:20341521-20341540 | MS.gene79059:intron | 20.0% |
| !! | TAAATTTACGAATTGTTTCA+GGG | + | chr3.1:20337501-20337520 | MS.gene79059:intron | 20.0% |
| !! | TAATATAAAATGGATATGCA+AGG | - | chr3.1:20341549-20341568 | None:intergenic | 20.0% |
| !! | TATTACTACTTGTCTTTAAT+TGG | + | chr3.1:20339497-20339516 | MS.gene79059:intron | 20.0% |
| !! | TATTATACTAGTAACCTATA+GGG | - | chr3.1:20340390-20340409 | None:intergenic | 20.0% |
| !! | TATTTCTTATTCTTAGAAGT+AGG | + | chr3.1:20339046-20339065 | MS.gene79059:intron | 20.0% |
| !! | TTAAATTTACGAATTGTTTC+AGG | + | chr3.1:20337500-20337519 | MS.gene79059:intron | 20.0% |
| !!! | AAACATATTTTCAAAAATGG+AGG | - | chr3.1:20339773-20339792 | None:intergenic | 20.0% |
| !!! | AACATATTTTCAAAAATGGA+GGG | - | chr3.1:20339772-20339791 | None:intergenic | 20.0% |
| !!! | AGCACATATATTTTTTCAAA+GGG | + | chr3.1:20340769-20340788 | MS.gene79059:intron | 20.0% |
| !!! | AGTAATTGAAGATTATTTCT+TGG | + | chr3.1:20337430-20337449 | MS.gene79059:intron | 20.0% |
| !!! | AGTTTACATTTTTTTCTTAC+AGG | + | chr3.1:20339311-20339330 | MS.gene79059:intron | 20.0% |
| !!! | ATATTTCTAAACTATCTTGT+TGG | - | chr3.1:20341099-20341118 | None:intergenic | 20.0% |
| !!! | ATTTTCACAAATTATCACTT+TGG | + | chr3.1:20337718-20337737 | MS.gene79059:intron | 20.0% |
| !!! | CAAGTTCTTTTACAAATTTT+AGG | - | chr3.1:20339262-20339281 | None:intergenic | 20.0% |
| !!! | CTTTAATTTAGAATATGGAT+TGG | + | chr3.1:20339090-20339109 | MS.gene79059:intron | 20.0% |
| !!! | GTATTATTTTAATCCGAAAT+TGG | - | chr3.1:20340442-20340461 | None:intergenic | 20.0% |
| !!! | GTTTACATTTTTTTCTTACA+GGG | + | chr3.1:20339312-20339331 | MS.gene79059:intron | 20.0% |
| !!! | GTTTTAGAAAAAAATTACCA+AGG | - | chr3.1:20341373-20341392 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTTATATTTTCCT+TGG | + | chr3.1:20338783-20338802 | MS.gene79059:intron | 20.0% |
| !!! | TTACAAAACAAATTTTCATG+TGG | - | chr3.1:20338130-20338149 | None:intergenic | 20.0% |
| !!! | TTTACATTTTTTTCTTACAG+GGG | + | chr3.1:20339313-20339332 | MS.gene79059:intron | 20.0% |
| ! | AATTATTAAGCGTGAATGTT+TGG | + | chr3.1:20338641-20338660 | MS.gene79059:intron | 25.0% |
| ! | AATTTATATGGCTATATGGA+TGG | - | chr3.1:20338921-20338940 | None:intergenic | 25.0% |
| ! | ACCATCAAAATTATCTTCAA+AGG | + | chr3.1:20340258-20340277 | MS.gene79059:intron | 25.0% |
| ! | ACTAGTATTTAGTGGTTTAT+AGG | - | chr3.1:20339833-20339852 | None:intergenic | 25.0% |
| ! | AGAAATAGTTTCTTCAATCT+TGG | + | chr3.1:20339677-20339696 | MS.gene79059:intron | 25.0% |
| ! | AGGAAAAAGAAAATCATTTG+AGG | + | chr3.1:20338245-20338264 | MS.gene79059:CDS | 25.0% |
| ! | ATACATTATTGGAATAATGC+TGG | + | chr3.1:20340407-20340426 | MS.gene79059:intron | 25.0% |
| ! | ATATTATTAAGTCAGTGGTT+AGG | + | chr3.1:20340549-20340568 | MS.gene79059:intron | 25.0% |
| ! | ATGCTGTGGAAATTAAATAT+GGG | - | chr3.1:20339600-20339619 | None:intergenic | 25.0% |
| ! | ATTGATCAACTAGTATTTAG+TGG | - | chr3.1:20339841-20339860 | None:intergenic | 25.0% |
| ! | ATTGGCATTTATTGAAAGAA+AGG | - | chr3.1:20339166-20339185 | None:intergenic | 25.0% |
| ! | ATTTGCTCTTATTATCAGAA+AGG | + | chr3.1:20337866-20337885 | MS.gene79059:CDS | 25.0% |
| ! | CAAATCAATGATTAGGATTA+AGG | + | chr3.1:20340073-20340092 | MS.gene79059:intron | 25.0% |
| ! | CAAATTTCAACATTCTGTAT+TGG | - | chr3.1:20339184-20339203 | None:intergenic | 25.0% |
| ! | GATCTATAGATCTAGTAAAA+TGG | - | chr3.1:20339572-20339591 | None:intergenic | 25.0% |
| ! | GATTAAAATAATACTGGTAG+TGG | + | chr3.1:20340448-20340467 | MS.gene79059:intron | 25.0% |
| ! | GGATAATTTATATGGCTATA+TGG | - | chr3.1:20338925-20338944 | None:intergenic | 25.0% |
| ! | GTATTATACTAGTAACCTAT+AGG | - | chr3.1:20340391-20340410 | None:intergenic | 25.0% |
| ! | TATAGTCAACCAAAATTTGT+AGG | + | chr3.1:20340359-20340378 | MS.gene79059:intron | 25.0% |
| ! | TGACAAAATATGATAGTTTG+CGG | - | chr3.1:20338510-20338529 | None:intergenic | 25.0% |
| ! | TGTAATAGCATTCTTTATTC+TGG | + | chr3.1:20340518-20340537 | MS.gene79059:intron | 25.0% |
| ! | TTAAAAGGGGAAAACAAATT+AGG | + | chr3.1:20341412-20341431 | MS.gene79059:intron | 25.0% |
| ! | TTTGCTCTTATTATCAGAAA+GGG | + | chr3.1:20337867-20337886 | MS.gene79059:CDS | 25.0% |
| !! | AATCAGTTCTTTTTCTGTTT+AGG | + | chr3.1:20337197-20337216 | MS.gene79059:intron | 25.0% |
| !! | AGAATTTTATTCCATCATGA+GGG | + | chr3.1:20341750-20341769 | MS.gene79059:CDS | 25.0% |
| !! | AGATTGAAGAAACTATTTCT+AGG | - | chr3.1:20339677-20339696 | None:intergenic | 25.0% |
| !! | CCGATATTTCATAGTATTTT+AGG | - | chr3.1:20341471-20341490 | None:intergenic | 25.0% |
| !! | CTTAATCCTAATCATTGATT+TGG | - | chr3.1:20340075-20340094 | None:intergenic | 25.0% |
| !! | GGAAATTATTGATAACTACA+AGG | + | chr3.1:20338570-20338589 | MS.gene79059:CDS | 25.0% |
| !! | TACAAAGTTATGATTTTGTC+AGG | - | chr3.1:20341259-20341278 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTTTTATCAGT+AGG | - | chr3.1:20338235-20338254 | None:intergenic | 25.0% |
| !! | TGTTTATTACGTAGTGTTTT+TGG | + | chr3.1:20341053-20341072 | MS.gene79059:intron | 25.0% |
| !!! | ACAAATTTTGGTTGACTATA+GGG | - | chr3.1:20340359-20340378 | None:intergenic | 25.0% |
| !!! | ACAATTTGTTAATCTGAATG+TGG | - | chr3.1:20340706-20340725 | None:intergenic | 25.0% |
| !!! | AGAGTTTAATGTTTTTCGAA+TGG | + | chr3.1:20341981-20342000 | MS.gene79059:CDS | 25.0% |
| !!! | ATTTTTTTGTCTCATGTAGT+AGG | + | chr3.1:20339430-20339449 | MS.gene79059:intron | 25.0% |
| !!! | GAGCACATATATTTTTTCAA+AGG | + | chr3.1:20340768-20340787 | MS.gene79059:intron | 25.0% |
| !!! | GATAATTTTGATGGTTTCTT+TGG | - | chr3.1:20340253-20340272 | None:intergenic | 25.0% |
| !!! | TACAAATTTTGGTTGACTAT+AGG | - | chr3.1:20340360-20340379 | None:intergenic | 25.0% |
| !!! | TCCTTTGAAGATAATTTTGA+TGG | - | chr3.1:20340262-20340281 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTTTGCAATTT+AGG | + | chr3.1:20336996-20337015 | MS.gene79059:intron | 25.0% |
| !!! | TTGTTAATCTTGTTGTTTGA+TGG | + | chr3.1:20337061-20337080 | MS.gene79059:intron | 25.0% |
| AAATGGAAATTGTCCATTTG+GGG | + | chr3.1:20338733-20338752 | MS.gene79059:CDS | 30.0% | |
| AAATTAAAGCCCCCATAAAA+GGG | - | chr3.1:20339079-20339098 | None:intergenic | 30.0% | |
| AAATTTACATTCTGATGGCT+TGG | - | chr3.1:20338362-20338381 | None:intergenic | 30.0% | |
| AACAACATCTACAAGGATTT+GGG | - | chr3.1:20338954-20338973 | None:intergenic | 30.0% | |
| AACAGAAAAAAGACCAAAGA+GGG | + | chr3.1:20340868-20340887 | MS.gene79059:intron | 30.0% | |
| AACCCAAATTTACATTCTGA+TGG | - | chr3.1:20338367-20338386 | None:intergenic | 30.0% | |
| AAGCCATCAGAATGTAAATT+TGG | + | chr3.1:20338361-20338380 | MS.gene79059:CDS | 30.0% | |
| AATTTACATTCTGATGGCTT+GGG | - | chr3.1:20338361-20338380 | None:intergenic | 30.0% | |
| AGAACTAATCCAACAAAGAA+AGG | - | chr3.1:20338892-20338911 | None:intergenic | 30.0% | |
| AGCCATCAGAATGTAAATTT+GGG | + | chr3.1:20338362-20338381 | MS.gene79059:CDS | 30.0% | |
| ATAAGTCAACAACATCTACA+AGG | - | chr3.1:20338961-20338980 | None:intergenic | 30.0% | |
| ATAGTTTCTTCAATCTTGGT+TGG | + | chr3.1:20339681-20339700 | MS.gene79059:intron | 30.0% | |
| ATGATAGAATAGTGTGTAAG+TGG | - | chr3.1:20340152-20340171 | None:intergenic | 30.0% | |
| ATGCTAAAGTAGCATCAAAT+TGG | + | chr3.1:20337993-20338012 | MS.gene79059:CDS | 30.0% | |
| ATTCAAAAGCTCAAACAGAT+TGG | - | chr3.1:20339653-20339672 | None:intergenic | 30.0% | |
| CAATGTCCAAATCAATGATT+AGG | + | chr3.1:20340066-20340085 | MS.gene79059:intron | 30.0% | |
| CAATTCCATGAAAATCATCA+GGG | - | chr3.1:20342050-20342069 | None:intergenic | 30.0% | |
| CACTACGTAATAAACACAAT+AGG | - | chr3.1:20341049-20341068 | None:intergenic | 30.0% | |
| GAAATGGAAATTGTCCATTT+GGG | + | chr3.1:20338732-20338751 | MS.gene79059:CDS | 30.0% | |
| GATGCTGTGGAAATTAAATA+TGG | - | chr3.1:20339601-20339620 | None:intergenic | 30.0% | |
| GTTGATCAATAGAGAGAAAA+CGG | + | chr3.1:20339851-20339870 | MS.gene79059:intron | 30.0% | |
| TAAATTAAAGCCCCCATAAA+AGG | - | chr3.1:20339080-20339099 | None:intergenic | 30.0% | |
| TACTACAAAGGAAGAAAAAC+AGG | + | chr3.1:20338549-20338568 | MS.gene79059:CDS | 30.0% | |
| TCAACCAAAATTTGTAGGTA+TGG | + | chr3.1:20340364-20340383 | MS.gene79059:intron | 30.0% | |
| TCAATTCCATGAAAATCATC+AGG | - | chr3.1:20342051-20342070 | None:intergenic | 30.0% | |
| TCTGATGAGAAAAATCACAT+TGG | - | chr3.1:20337567-20337586 | None:intergenic | 30.0% | |
| TGCTAAAGTAGCATCAAATT+GGG | + | chr3.1:20337994-20338013 | MS.gene79059:CDS | 30.0% | |
| TGCTGTGGAAATTAAATATG+GGG | - | chr3.1:20339599-20339618 | None:intergenic | 30.0% | |
| TGGAAACAAGTACTATCATA+TGG | + | chr3.1:20340798-20340817 | MS.gene79059:intron | 30.0% | |
| TTACTACACATTGGAATACA+TGG | - | chr3.1:20339993-20340012 | None:intergenic | 30.0% | |
| TTAGGTTATGGTAGTTTCTA+GGG | + | chr3.1:20340567-20340586 | MS.gene79059:intron | 30.0% | |
| TTAGTGGTTTATAGGAGTAA+TGG | - | chr3.1:20339825-20339844 | None:intergenic | 30.0% | |
| TTCAAAAGCTCAAACAGATT+GGG | - | chr3.1:20339652-20339671 | None:intergenic | 30.0% | |
| TTGATCAATAGAGAGAAAAC+GGG | + | chr3.1:20339852-20339871 | MS.gene79059:intron | 30.0% | |
| TTGCAATCAATCAATCTGAA+AGG | - | chr3.1:20338698-20338717 | None:intergenic | 30.0% | |
| ! | AAAGTTATGATTTTGTCAGG+TGG | - | chr3.1:20341256-20341275 | None:intergenic | 30.0% |
| ! | AATGATGATGCATTCTCATA+TGG | + | chr3.1:20342095-20342114 | MS.gene79059:CDS | 30.0% |
| ! | GAGAATTTTATTCCATCATG+AGG | + | chr3.1:20341749-20341768 | MS.gene79059:CDS | 30.0% |
| ! | TAGGTTTCTTTCCCTTTTAT+GGG | + | chr3.1:20339065-20339084 | MS.gene79059:intron | 30.0% |
| ! | TCATATTTTGTCATTCCAAG+TGG | + | chr3.1:20338517-20338536 | MS.gene79059:CDS | 30.0% |
| ! | TGATTTTTCTCATCAGAGAA+AGG | + | chr3.1:20337570-20337589 | MS.gene79059:CDS | 30.0% |
| ! | TGCAATTTAGGTTTCAAAAG+AGG | + | chr3.1:20337008-20337027 | MS.gene79059:intron | 30.0% |
| ! | TGGTATTTGGTTTACTACAA+AGG | + | chr3.1:20338537-20338556 | MS.gene79059:CDS | 30.0% |
| ! | TTGATGGTTTCTTTGGATTT+GGG | - | chr3.1:20340246-20340265 | None:intergenic | 30.0% |
| ! | TTTGATGGTTTCTTTGGATT+TGG | - | chr3.1:20340247-20340266 | None:intergenic | 30.0% |
| ! | TTTTCATGGAATTGATCCTA+TGG | + | chr3.1:20342056-20342075 | MS.gene79059:CDS | 30.0% |
| !!! | AAACATTTTGACTCTGGAAA+TGG | + | chr3.1:20338716-20338735 | MS.gene79059:CDS | 30.0% |
| !!! | AAGGAGTTTTAAGAAGTTCA+AGG | - | chr3.1:20340599-20340618 | None:intergenic | 30.0% |
| !!! | ATTTTTTCAAAGGGTGAGTA+TGG | + | chr3.1:20340778-20340797 | MS.gene79059:intron | 30.0% |
| !!! | ATTTTTTTCTTACAGGGGAT+GGG | + | chr3.1:20339318-20339337 | MS.gene79059:intron | 30.0% |
| AATTCTTGCAGCATACACAA+CGG | - | chr3.1:20338625-20338644 | None:intergenic | 35.0% | |
| ACAACATCTACAAGGATTTG+GGG | - | chr3.1:20338953-20338972 | None:intergenic | 35.0% | |
| ACAGAAAAAAGACCAAAGAG+GGG | + | chr3.1:20340869-20340888 | MS.gene79059:intron | 35.0% | |
| ACATGTCATGCATATCGAAA+TGG | - | chr3.1:20341696-20341715 | None:intergenic | 35.0% | |
| AGAAGAAGATGAAGATTACG+AGG | + | chr3.1:20342125-20342144 | MS.gene79059:CDS | 35.0% | |
| AGATGAAATAAGAGATGCTG+TGG | - | chr3.1:20339614-20339633 | None:intergenic | 35.0% | |
| ATACATGGAGCATAGAAAGT+AGG | - | chr3.1:20339978-20339997 | None:intergenic | 35.0% | |
| ATGAAGTGAAGACAATAGGA+AGG | - | chr3.1:20340842-20340861 | None:intergenic | 35.0% | |
| ATGATAATCAAGCTTGACCA+AGG | - | chr3.1:20338803-20338822 | None:intergenic | 35.0% | |
| CAACAAAGAAAGGAAAAGCA+TGG | - | chr3.1:20338882-20338901 | None:intergenic | 35.0% | |
| CAACAACATCTACAAGGATT+TGG | - | chr3.1:20338955-20338974 | None:intergenic | 35.0% | |
| GAAAGTAGGGAATGTAATTG+AGG | - | chr3.1:20339964-20339983 | None:intergenic | 35.0% | |
| GAACAGAAAAAAGACCAAAG+AGG | + | chr3.1:20340867-20340886 | MS.gene79059:intron | 35.0% | |
| GAATAGTGTGTAAGTGGTAA+AGG | - | chr3.1:20340146-20340165 | None:intergenic | 35.0% | |
| GAGAAACGATCGAAGAAAAA+AGG | - | chr3.1:20336937-20336956 | None:intergenic | 35.0% | |
| GATAATGCCATCATCTCAAA+TGG | - | chr3.1:20341802-20341821 | None:intergenic | 35.0% | |
| GATGTATTCGTTTGACCAAA+TGG | - | chr3.1:20340675-20340694 | None:intergenic | 35.0% | |
| GATTATTTAATCCAGATGCG+TGG | - | chr3.1:20338993-20339012 | None:intergenic | 35.0% | |
| GGAAATGGAAATTGTCCATT+TGG | + | chr3.1:20338731-20338750 | MS.gene79059:CDS | 35.0% | |
| GGGAGAACGGATAATTTATA+TGG | - | chr3.1:20338933-20338952 | None:intergenic | 35.0% | |
| GTAAAATGGTGAATGTGACA+AGG | - | chr3.1:20339558-20339577 | None:intergenic | 35.0% | |
| GTAGTAAACCAAATACCACT+TGG | - | chr3.1:20338535-20338554 | None:intergenic | 35.0% | |
| GTATTCCAATGTGTAGTAAC+TGG | + | chr3.1:20339994-20340013 | MS.gene79059:intron | 35.0% | |
| GTGAATATCTTTCACCTCAT+AGG | + | chr3.1:20339206-20339225 | MS.gene79059:intron | 35.0% | |
| GTTAGGTTATGGTAGTTTCT+AGG | + | chr3.1:20340566-20340585 | MS.gene79059:intron | 35.0% | |
| TACATGGAGCATAGAAAGTA+GGG | - | chr3.1:20339977-20339996 | None:intergenic | 35.0% | |
| TATTGGAATAATGCTGGTAG+TGG | + | chr3.1:20340413-20340432 | MS.gene79059:intron | 35.0% | |
| TGAAACTACTTGGAAGATCT+TGG | - | chr3.1:20339534-20339553 | None:intergenic | 35.0% | |
| TGAAGTGAAGACAATAGGAA+GGG | - | chr3.1:20340841-20340860 | None:intergenic | 35.0% | |
| TGTCATGAAGTGAAGACAAT+AGG | - | chr3.1:20340846-20340865 | None:intergenic | 35.0% | |
| TTAAGTCAGTGGTTAGGTTA+TGG | + | chr3.1:20340555-20340574 | MS.gene79059:intron | 35.0% | |
| TTCTTCCAGTTACTACACAT+TGG | - | chr3.1:20340002-20340021 | None:intergenic | 35.0% | |
| TTGGCTGAAAATGATACTAG+AGG | + | chr3.1:20340936-20340955 | MS.gene79059:intron | 35.0% | |
| TTGTCATTCCAAGTGGTATT+TGG | + | chr3.1:20338524-20338543 | MS.gene79059:CDS | 35.0% | |
| TTTCGATATGCATGACATGT+TGG | + | chr3.1:20341696-20341715 | MS.gene79059:CDS | 35.0% | |
| TTTGAGGACTTGTGACAAAA+AGG | + | chr3.1:20338261-20338280 | MS.gene79059:CDS | 35.0% | |
| ! | AATGGATCCATTTGAGATGA+TGG | + | chr3.1:20341792-20341811 | MS.gene79059:CDS | 35.0% |
| ! | AGGTTTCTTTCCCTTTTATG+GGG | + | chr3.1:20339066-20339085 | MS.gene79059:intron | 35.0% |
| ! | CATGCTTTTCCTTTCTTTGT+TGG | + | chr3.1:20338880-20338899 | MS.gene79059:intron | 35.0% |
| ! | CCATACCTGCAAAATTTTGT+GGG | - | chr3.1:20340336-20340355 | None:intergenic | 35.0% |
| ! | GGGGGCTTTAATTTAGAATA+TGG | + | chr3.1:20339085-20339104 | MS.gene79059:intron | 35.0% |
| ! | GTAGGTTTCTTTCCCTTTTA+TGG | + | chr3.1:20339064-20339083 | MS.gene79059:intron | 35.0% |
| ! | TAAGCTTTTACCCACCAAAT+GGG | + | chr3.1:20340283-20340302 | MS.gene79059:intron | 35.0% |
| ! | TGGTTTATAGGAGTAATGGA+CGG | - | chr3.1:20339821-20339840 | None:intergenic | 35.0% |
| ! | TTAAGCTTTTACCCACCAAA+TGG | + | chr3.1:20340282-20340301 | MS.gene79059:intron | 35.0% |
| ! | TTTTGTGATCCATGAGTTGT+TGG | + | chr3.1:20340913-20340932 | MS.gene79059:intron | 35.0% |
| !! | CAAAAAGGAAAAGTACCTTC+TGG | + | chr3.1:20338276-20338295 | MS.gene79059:CDS | 35.0% |
| !! | GACACACTTGTTTTTCCATT+TGG | + | chr3.1:20340657-20340676 | MS.gene79059:intron | 35.0% |
| !! | GGTCTACTAGACTTGTTAAT+GGG | + | chr3.1:20340304-20340323 | MS.gene79059:intron | 35.0% |
| !! | GTCTACTAGACTTGTTAATG+GGG | + | chr3.1:20340305-20340324 | MS.gene79059:intron | 35.0% |
| !!! | ACGTAGTGTTTTTGGTGATA+GGG | + | chr3.1:20341061-20341080 | MS.gene79059:intron | 35.0% |
| !!! | AGGGACTCAGATTTTTTTGA+GGG | + | chr3.1:20341769-20341788 | MS.gene79059:CDS | 35.0% |
| !!! | CATTTTTTTCTTACAGGGGA+TGG | + | chr3.1:20339317-20339336 | MS.gene79059:intron | 35.0% |
| !!! | CTCAGATTTTTTTGAGGGAA+TGG | + | chr3.1:20341774-20341793 | MS.gene79059:CDS | 35.0% |
| !!! | GATTGCAAACATTTTGACTC+TGG | + | chr3.1:20338710-20338729 | MS.gene79059:CDS | 35.0% |
| !!! | GTTTCTGGGATAGATGATTT+TGG | + | chr3.1:20342024-20342043 | MS.gene79059:CDS | 35.0% |
| !!! | TACGTAGTGTTTTTGGTGAT+AGG | + | chr3.1:20341060-20341079 | MS.gene79059:intron | 35.0% |
| AAAATCTGAGTCCCTCATGA+TGG | - | chr3.1:20341764-20341783 | None:intergenic | 40.0% | |
| AAGATGATGCTTGAGAAGCT+CGG | - | chr3.1:20337931-20337950 | None:intergenic | 40.0% | |
| AAGCATCAACAACAGTGTAG+GGG | - | chr3.1:20341149-20341168 | None:intergenic | 40.0% | |
| AATAGGAAGGGTCTGGATAT+AGG | - | chr3.1:20340829-20340848 | None:intergenic | 40.0% | |
| ACAAGCATCAACAACAGTGT+AGG | - | chr3.1:20341151-20341170 | None:intergenic | 40.0% | |
| ACAAGTCTAGTAGACCCATT+TGG | - | chr3.1:20340300-20340319 | None:intergenic | 40.0% | |
| ACTCATTCTCAGATCACTCA+TGG | - | chr3.1:20340981-20341000 | None:intergenic | 40.0% | |
| AGCATCATCTTCAGCATCTA+TGG | + | chr3.1:20337940-20337959 | MS.gene79059:CDS | 40.0% | |
| ATAACTACAAGGCAAACTGC+AGG | + | chr3.1:20338581-20338600 | MS.gene79059:CDS | 40.0% | |
| ATCATCTATCCCAGAAACCA+TGG | - | chr3.1:20342022-20342041 | None:intergenic | 40.0% | |
| ATTCAGACGATGAGGATGAT+GGG | + | chr3.1:20341866-20341885 | MS.gene79059:CDS | 40.0% | |
| ATTTGTAGGTATGGCCCTAT+AGG | + | chr3.1:20340373-20340392 | MS.gene79059:intron | 40.0% | |
| CAACTAGCGACTCTGTATTA+GGG | - | chr3.1:20340113-20340132 | None:intergenic | 40.0% | |
| CAAGCATCAACAACAGTGTA+GGG | - | chr3.1:20341150-20341169 | None:intergenic | 40.0% | |
| CAATGCGTCATAACTCAAAG+AGG | - | chr3.1:20340203-20340222 | None:intergenic | 40.0% | |
| CCTGCATCCTACTGATAAAA+AGG | + | chr3.1:20338225-20338244 | MS.gene79059:CDS | 40.0% | |
| CTCATAGGAAGATGATGTAG+AGG | + | chr3.1:20339221-20339240 | MS.gene79059:intron | 40.0% | |
| CTCTACATCATCTTCCTATG+AGG | - | chr3.1:20339223-20339242 | None:intergenic | 40.0% | |
| GAAGGAACCTTTGTAACCTT+CGG | - | chr3.1:20338022-20338041 | None:intergenic | 40.0% | |
| GAATCAAAAGGACCCAAACA+AGG | - | chr3.1:20341850-20341869 | None:intergenic | 40.0% | |
| GATATCAAAGCTGCATCCAT+AGG | - | chr3.1:20342075-20342094 | None:intergenic | 40.0% | |
| GTGACAAGGATGAAACTACT+TGG | - | chr3.1:20339544-20339563 | None:intergenic | 40.0% | |
| GTTTGTCATGTATCCGCAAT+TGG | + | chr3.1:20338413-20338432 | MS.gene79059:CDS | 40.0% | |
| TATCACTTTGGTCGATGTGT+CGG | + | chr3.1:20337730-20337749 | MS.gene79059:intron | 40.0% | |
| TCAAATTGCTGCTATGCAAG+AGG | + | chr3.1:20341900-20341919 | MS.gene79059:CDS | 40.0% | |
| TCCTCATCGTCTGAATCAAA+AGG | - | chr3.1:20341862-20341881 | None:intergenic | 40.0% | |
| TGAGTTATGACGCATTGCAT+TGG | + | chr3.1:20340206-20340225 | MS.gene79059:intron | 40.0% | |
| TGTTTAACTGCCCTGTGTTT+CGG | - | chr3.1:20341326-20341345 | None:intergenic | 40.0% | |
| ! | AGGGCCATACCTACAAATTT+TGG | - | chr3.1:20340371-20340390 | None:intergenic | 40.0% |
| ! | AGTCACCCACAAAATTTTGC+AGG | + | chr3.1:20340328-20340347 | MS.gene79059:intron | 40.0% |
| ! | ATGATAGTTTGCGGCAAACA+GGG | - | chr3.1:20338501-20338520 | None:intergenic | 40.0% |
| ! | CAGAAAGCATGATCACATTC+TGG | - | chr3.1:20338394-20338413 | None:intergenic | 40.0% |
| ! | CCCACAAAATTTTGCAGGTA+TGG | + | chr3.1:20340333-20340352 | MS.gene79059:intron | 40.0% |
| ! | CCTTTTTATCAGTAGGATGC+AGG | - | chr3.1:20338228-20338247 | None:intergenic | 40.0% |
| ! | GCCATACCTGCAAAATTTTG+TGG | - | chr3.1:20340337-20340356 | None:intergenic | 40.0% |
| ! | GGTTTCTTTCCCTTTTATGG+GGG | + | chr3.1:20339067-20339086 | MS.gene79059:intron | 40.0% |
| ! | GTAGTAGGCAAGTGGTATTT+TGG | + | chr3.1:20339445-20339464 | MS.gene79059:intron | 40.0% |
| ! | GTGAACGATTGTTGTTCAGT+TGG | - | chr3.1:20339355-20339374 | None:intergenic | 40.0% |
| ! | GTTATGATTTTGTCAGGTGG+AGG | - | chr3.1:20341253-20341272 | None:intergenic | 40.0% |
| ! | TATGATAGTTTGCGGCAAAC+AGG | - | chr3.1:20338502-20338521 | None:intergenic | 40.0% |
| ! | TTTGGCCCTGATGATTTTCA+TGG | + | chr3.1:20342042-20342061 | MS.gene79059:CDS | 40.0% |
| !! | AACACCTCATGGACTAGATA+AGG | + | chr3.1:20341342-20341361 | MS.gene79059:intron | 40.0% |
| !! | CTGGTAGTGGAAACCAATTT+CGG | + | chr3.1:20340426-20340445 | MS.gene79059:intron | 40.0% |
| !! | GCAAGTGGTATTTTGGACTT+TGG | + | chr3.1:20339452-20339471 | MS.gene79059:intron | 40.0% |
| !! | GGGTCTACTAGACTTGTTAA+TGG | + | chr3.1:20340303-20340322 | MS.gene79059:intron | 40.0% |
| !! | GGTTGATGAGATTTACCTGT+TGG | - | chr3.1:20336916-20336935 | None:intergenic | 40.0% |
| !! | GTTTCGGGTGGACTAAATAA+TGG | - | chr3.1:20341310-20341329 | None:intergenic | 40.0% |
| !! | TAACACTGATTTCCCCTCTT+TGG | - | chr3.1:20340884-20340903 | None:intergenic | 40.0% |
| !! | TCCTTTTGATTCAGACGATG+AGG | + | chr3.1:20341858-20341877 | MS.gene79059:CDS | 40.0% |
| !! | TTATAGGAGTAATGGACGGA+GGG | - | chr3.1:20339817-20339836 | None:intergenic | 40.0% |
| !! | TTTATAGGAGTAATGGACGG+AGG | - | chr3.1:20339818-20339837 | None:intergenic | 40.0% |
| !!! | AAATGGTTTTGTCTGCGTTG+AGG | - | chr3.1:20341679-20341698 | None:intergenic | 40.0% |
| !!! | GAGGGACTCAGATTTTTTTG+AGG | + | chr3.1:20341768-20341787 | MS.gene79059:CDS | 40.0% |
| AGCATCAAATTGGGTTCCGA+AGG | + | chr3.1:20338003-20338022 | MS.gene79059:CDS | 45.0% | |
| AGTCTAGTAGACCCATTTGG+TGG | - | chr3.1:20340297-20340316 | None:intergenic | 45.0% | |
| ATCAACAACAGTGTAGGGGA+GGG | - | chr3.1:20341145-20341164 | None:intergenic | 45.0% | |
| ATTTAGTCCACCCGAAACAC+AGG | + | chr3.1:20341312-20341331 | MS.gene79059:intron | 45.0% | |
| CACAAACACAGACACCAGAA+AGG | - | chr3.1:20337771-20337790 | None:intergenic | 45.0% | |
| CATGACATGTTGGATGTGCT+CGG | + | chr3.1:20341706-20341725 | MS.gene79059:CDS | 45.0% | |
| CCAACCTCTGCAATGGAAAT+CGG | + | chr3.1:20338448-20338467 | MS.gene79059:CDS | 45.0% | |
| CGATTTCCATTGCAGAGGTT+GGG | - | chr3.1:20338450-20338469 | None:intergenic | 45.0% | |
| CTACAAGGATTTGGGGAGAA+CGG | - | chr3.1:20338946-20338965 | None:intergenic | 45.0% | |
| GATGGCATTATCAGATTCGC+TGG | + | chr3.1:20341810-20341829 | MS.gene79059:CDS | 45.0% | |
| GATTCAGACGATGAGGATGA+TGG | + | chr3.1:20341865-20341884 | MS.gene79059:CDS | 45.0% | |
| GATTTCCATTGCAGAGGTTG+GGG | - | chr3.1:20338449-20338468 | None:intergenic | 45.0% | |
| GCAACTAGCGACTCTGTATT+AGG | - | chr3.1:20340114-20340133 | None:intergenic | 45.0% | |
| GGACAAGTTGCTAAAGCTTG+TGG | - | chr3.1:20339145-20339164 | None:intergenic | 45.0% | |
| GGTGGATGTTCTCGTATTCA+CGG | + | chr3.1:20338172-20338191 | MS.gene79059:CDS | 45.0% | |
| GTCTAGTAGACCCATTTGGT+GGG | - | chr3.1:20340296-20340315 | None:intergenic | 45.0% | |
| GTGAATACGAGAACATCCAC+CGG | - | chr3.1:20338173-20338192 | None:intergenic | 45.0% | |
| GTGATCCATGAGTTGTTGGT+TGG | + | chr3.1:20340917-20340936 | MS.gene79059:intron | 45.0% | |
| GTTTAACTGCCCTGTGTTTC+GGG | - | chr3.1:20341325-20341344 | None:intergenic | 45.0% | |
| TAGAAACAGCTAGCCCCAAA+TGG | - | chr3.1:20338749-20338768 | None:intergenic | 45.0% | |
| TCATTCCCAAGTAGCTCAGT+TGG | - | chr3.1:20340639-20340658 | None:intergenic | 45.0% | |
| TGAAGACAATAGGAAGGGTC+TGG | - | chr3.1:20340836-20340855 | None:intergenic | 45.0% | |
| TGAATACGAGAACATCCACC+GGG | - | chr3.1:20338172-20338191 | None:intergenic | 45.0% | |
| TGCAACATACACTAGCCAGT+AGG | - | chr3.1:20339709-20339728 | None:intergenic | 45.0% | |
| TGCTCCTTATCTAGTCCATG+AGG | - | chr3.1:20341349-20341368 | None:intergenic | 45.0% | |
| TGTCTCATGTAGTAGGCAAG+TGG | + | chr3.1:20339437-20339456 | MS.gene79059:intron | 45.0% | |
| TTCAGATTCTGCTGTGCATG+TGG | + | chr3.1:20337964-20337983 | MS.gene79059:CDS | 45.0% | |
| TTCAGCCAACCAACAACTCA+TGG | - | chr3.1:20340925-20340944 | None:intergenic | 45.0% | |
| TTGGAAGATCTTGGAGACGA+TGG | - | chr3.1:20339525-20339544 | None:intergenic | 45.0% | |
| TTGGGTTCCGAAGGTTACAA+AGG | + | chr3.1:20338012-20338031 | MS.gene79059:CDS | 45.0% | |
| TTTAGTCCACCCGAAACACA+GGG | + | chr3.1:20341313-20341332 | MS.gene79059:intron | 45.0% | |
| TTTCAGCATACAGTGAAGCC+TGG | + | chr3.1:20341622-20341641 | MS.gene79059:intron | 45.0% | |
| ! | ACACTCGTAGCTTTACACGT+TGG | - | chr3.1:20340735-20340754 | None:intergenic | 45.0% |
| ! | AGTACTGGATTCACCGACAT+CGG | - | chr3.1:20338095-20338114 | None:intergenic | 45.0% |
| ! | ATGATTTTGTCAGGTGGAGG+TGG | - | chr3.1:20341250-20341269 | None:intergenic | 45.0% |
| ! | CAGAAAGGGTCTTGTGCTTA+TGG | + | chr3.1:20337881-20337900 | MS.gene79059:CDS | 45.0% |
| ! | GGTCTTGTGCTTATGGTAGT+CGG | + | chr3.1:20337888-20337907 | MS.gene79059:CDS | 45.0% |
| ! | GGTGAGGTTGATCTATCAAG+TGG | + | chr3.1:20341727-20341746 | MS.gene79059:CDS | 45.0% |
| ! | GTGTCGGTGATTAGAGGTAT+CGG | - | chr3.1:20337664-20337683 | None:intergenic | 45.0% |
| ! | TAGTGGGTAAGAGTGGAAGT+AGG | + | chr3.1:20340465-20340484 | MS.gene79059:intron | 45.0% |
| !! | ACTACCGATTTCCATTGCAG+AGG | - | chr3.1:20338455-20338474 | None:intergenic | 45.0% |
| !! | ATACTGGTAGTGGGTAAGAG+TGG | + | chr3.1:20340458-20340477 | MS.gene79059:intron | 45.0% |
| !! | ATGGAAGGTGTCTGGAAACA+AGG | - | chr3.1:20341222-20341241 | None:intergenic | 45.0% |
| !! | GTTTGCAAGTTTTATGCGCG+AGG | + | chr3.1:20337523-20337542 | MS.gene79059:CDS | 45.0% |
| !! | TATAGGAGTAATGGACGGAG+GGG | - | chr3.1:20339816-20339835 | None:intergenic | 45.0% |
| !! | TGGAAGGTGTCTGGAAACAA+GGG | - | chr3.1:20341221-20341240 | None:intergenic | 45.0% |
| !!! | AGTGTTTTTGGTGATAGGGC+AGG | + | chr3.1:20341065-20341084 | MS.gene79059:intron | 45.0% |
| !!! | CGCTGTTTTTCAAAGCCAGA+AGG | - | chr3.1:20338294-20338313 | None:intergenic | 45.0% |
| !!! | CTGATGGCTTGGGTTTTGAA+AGG | - | chr3.1:20338351-20338370 | None:intergenic | 45.0% |
| !! | TATAAAAATTTAATTAAAAG+GGG | + | chr3.1:20341399-20341418 | MS.gene79059:intron | 5.0% |
| AGGGCAGGTTCTCACTGTAT+TGG | - | chr3.1:20338482-20338501 | None:intergenic | 50.0% | |
| ATGCAAGAGGCCATGGTTTC+TGG | + | chr3.1:20342009-20342028 | MS.gene79059:CDS | 50.0% | |
| CAGGGCAGTTAAACACCTCA+TGG | + | chr3.1:20341331-20341350 | MS.gene79059:intron | 50.0% | |
| CATCAACAACAGTGTAGGGG+AGG | - | chr3.1:20341146-20341165 | None:intergenic | 50.0% | |
| CATCAGGACTCTACCGATGT+CGG | + | chr3.1:20338079-20338098 | MS.gene79059:CDS | 50.0% | |
| CCGATTTCCATTGCAGAGGT+TGG | - | chr3.1:20338451-20338470 | None:intergenic | 50.0% | |
| CGTCATCGTCATCGTCATCA+GGG | - | chr3.1:20341954-20341973 | None:intergenic | 50.0% | |
| GAATACGAGAACATCCACCG+GGG | - | chr3.1:20338171-20338190 | None:intergenic | 50.0% | |
| GATGTCGGTGAATCCAGTAC+TGG | + | chr3.1:20338094-20338113 | MS.gene79059:CDS | 50.0% | |
| GCATTATCAGATTCGCTGGC+TGG | + | chr3.1:20341814-20341833 | MS.gene79059:CDS | 50.0% | |
| GGGTTTACAACGCAAGCATC+AGG | + | chr3.1:20338063-20338082 | MS.gene79059:CDS | 50.0% | |
| GTCGTTGTCAGTGTCCTTTC+TGG | + | chr3.1:20337754-20337773 | MS.gene79059:intron | 50.0% | |
| GTTTCGGTAGGCTAGGACAA+TGG | - | chr3.1:20341183-20341202 | None:intergenic | 50.0% | |
| TCAACAACAGTGTAGGGGAG+GGG | - | chr3.1:20341144-20341163 | None:intergenic | 50.0% | |
| TCCCAAGTAGCTCAGTTGGT+GGG | - | chr3.1:20340635-20340654 | None:intergenic | 50.0% | |
| TCGAATGGCTGCTATGCAAG+AGG | + | chr3.1:20341996-20342015 | MS.gene79059:CDS | 50.0% | |
| TCGTCATCGTCATCGTCATC+AGG | - | chr3.1:20341955-20341974 | None:intergenic | 50.0% | |
| TGAAGCCTGGCTCATACACA+TGG | + | chr3.1:20341635-20341654 | MS.gene79059:CDS | 50.0% | |
| TGACGATGACGATGACGATG+AGG | + | chr3.1:20341957-20341976 | MS.gene79059:CDS | 50.0% | |
| TGCAAGAGGCCATGGTTTCT+GGG | + | chr3.1:20342010-20342029 | MS.gene79059:CDS | 50.0% | |
| TGCTTGTTCAGCAGCTAGCT+AGG | + | chr3.1:20341014-20341033 | MS.gene79059:intron | 50.0% | |
| TGGTCTAGCACTACCAGTAC+TGG | - | chr3.1:20338110-20338129 | None:intergenic | 50.0% | |
| TGTCTCCATGTGTATGAGCC+AGG | - | chr3.1:20341643-20341662 | None:intergenic | 50.0% | |
| TTCCCAAGTAGCTCAGTTGG+TGG | - | chr3.1:20340636-20340655 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTGGAAACAAGGG+TGG | - | chr3.1:20341218-20341237 | None:intergenic | 50.0% |
| ! | AGTGTCGTGTCGGTGATTAG+AGG | - | chr3.1:20337670-20337689 | None:intergenic | 50.0% |
| ! | ATGACGCATTGCATTGGCGA+TGG | + | chr3.1:20340212-20340231 | MS.gene79059:intron | 50.0% |
| ! | ATTTTGTCAGGTGGAGGTGG+TGG | - | chr3.1:20341247-20341266 | None:intergenic | 50.0% |
| ! | CAATCTTGGTTGGTGCCTAC+TGG | + | chr3.1:20339691-20339710 | MS.gene79059:intron | 50.0% |
| ! | GCTCTTGGGATGGATGCTTT+TGG | + | chr3.1:20341928-20341947 | MS.gene79059:CDS | 50.0% |
| ! | TTATCAGATTCGCTGGCTGG+CGG | + | chr3.1:20341817-20341836 | MS.gene79059:CDS | 50.0% |
| ! | TTTTGTCTGCGTTGAGGTGG+TGG | - | chr3.1:20341673-20341692 | None:intergenic | 50.0% |
| !! | CGGGTGGACTAAATAATGGC+AGG | - | chr3.1:20341306-20341325 | None:intergenic | 50.0% |
| !! | GACTAGATAAGGAGCACCCT+TGG | + | chr3.1:20341353-20341372 | MS.gene79059:intron | 50.0% |
| !! | TAGCTCAGTTGGTGGGCTAA+GGG | - | chr3.1:20340628-20340647 | None:intergenic | 50.0% |
| !! | TGGGGCTAGCTGTTTCTACA+AGG | + | chr3.1:20338751-20338770 | MS.gene79059:CDS | 50.0% |
| !!! | TGGTTTTGTCTGCGTTGAGG+TGG | - | chr3.1:20341676-20341695 | None:intergenic | 50.0% |
| ACCTGACAAGCGTGGCGTAA+AGG | + | chr3.1:20338042-20338061 | MS.gene79059:CDS | 55.0% | |
| AGCATCCATCCCAAGAGCCA+TGG | - | chr3.1:20341926-20341945 | None:intergenic | 55.0% | |
| AGCCCACCAACTGAGCTACT+TGG | + | chr3.1:20340630-20340649 | MS.gene79059:intron | 55.0% | |
| ATGCAAGAGGCCATGGCTCT+TGG | + | chr3.1:20341913-20341932 | MS.gene79059:CDS | 55.0% | |
| CACACGAGTCAGTGTCGTGT+CGG | - | chr3.1:20337680-20337699 | None:intergenic | 55.0% | |
| CATACACATGGAGACACCGC+AGG | + | chr3.1:20341647-20341666 | MS.gene79059:CDS | 55.0% | |
| CCTGACAAGCGTGGCGTAAA+GGG | + | chr3.1:20338043-20338062 | MS.gene79059:CDS | 55.0% | |
| GCCCACCAACTGAGCTACTT+GGG | + | chr3.1:20340631-20340650 | MS.gene79059:intron | 55.0% | |
| GCGCGAGGCGTATGTTTGAA+AGG | + | chr3.1:20337538-20337557 | MS.gene79059:CDS | 55.0% | |
| GGGCACTACTACGCCAATTG+CGG | - | chr3.1:20338429-20338448 | None:intergenic | 55.0% | |
| GTTCCTTCACCTGACAAGCG+TGG | + | chr3.1:20338034-20338053 | MS.gene79059:CDS | 55.0% | |
| TAACTGCCCTGTGTTTCGGG+TGG | - | chr3.1:20341322-20341341 | None:intergenic | 55.0% | |
| TAGTGCCCCAACCTCTGCAA+TGG | + | chr3.1:20338441-20338460 | MS.gene79059:CDS | 55.0% | |
| TCGGTAGGCTAGGACAATGG+TGG | - | chr3.1:20341180-20341199 | None:intergenic | 55.0% | |
| TGCAAGAGGCCATGGCTCTT+GGG | + | chr3.1:20341914-20341933 | MS.gene79059:CDS | 55.0% | |
| TGCTGCTATGCAAGAGGCCA+TGG | + | chr3.1:20341906-20341925 | MS.gene79059:CDS | 55.0% | |
| TGGCGGTTCAGGTCCTTGTT+TGG | + | chr3.1:20341834-20341853 | MS.gene79059:CDS | 55.0% | |
| ! | CATGTTGGATGTGCTCGGTG+AGG | + | chr3.1:20341711-20341730 | MS.gene79059:CDS | 55.0% |
| ! | GGCGGTTCAGGTCCTTGTTT+GGG | + | chr3.1:20341835-20341854 | MS.gene79059:CDS | 55.0% |
| ! | TAGTTTGCGGCAAACAGGGC+AGG | - | chr3.1:20338497-20338516 | None:intergenic | 55.0% |
| !! | AGTAATGGACGGAGGGGTGA+TGG | - | chr3.1:20339810-20339829 | None:intergenic | 55.0% |
| !! | GGTGGGCTAAGGGACATCAA+AGG | - | chr3.1:20340618-20340637 | None:intergenic | 55.0% |
| !! | GTAGCTCAGTTGGTGGGCTA+AGG | - | chr3.1:20340629-20340648 | None:intergenic | 55.0% |
| !! | TGGTGGTGATGGAAGGTGTC+TGG | - | chr3.1:20341230-20341249 | None:intergenic | 55.0% |
| ACGCCACGCTTGTCAGGTGA+AGG | - | chr3.1:20338040-20338059 | None:intergenic | 60.0% | |
| AGAACATCCACCGGGGCAGT+TGG | - | chr3.1:20338164-20338183 | None:intergenic | 60.0% | |
| AGAGGCCATGGCTCTTGGGA+TGG | + | chr3.1:20341918-20341937 | MS.gene79059:CDS | 60.0% | |
| AGGGGAGGGGCAAACAAGGT+TGG | - | chr3.1:20341131-20341150 | None:intergenic | 60.0% | |
| ATGCGCGCTAACCACGCATC+TGG | + | chr3.1:20338979-20338998 | MS.gene79059:intron | 60.0% | |
| CCCTTTACGCCACGCTTGTC+AGG | - | chr3.1:20338046-20338065 | None:intergenic | 60.0% | |
| GGCTGCTATGCAAGAGGCCA+TGG | + | chr3.1:20342002-20342021 | MS.gene79059:CDS | 60.0% | |
| GGGGAGGGGCAAACAAGGTT+GGG | - | chr3.1:20341130-20341149 | None:intergenic | 60.0% | |
| GTGTAGGGGAGGGGCAAACA+AGG | - | chr3.1:20341135-20341154 | None:intergenic | 60.0% | |
| TTTGCTGCTGCCAACTGCCC+CGG | + | chr3.1:20338151-20338170 | MS.gene79059:CDS | 60.0% | |
| ! | TCAGGTGGAGGTGGTGGTGA+TGG | - | chr3.1:20341241-20341260 | None:intergenic | 60.0% |
| !! | GTGGAGGTGGTGGTGATGGA+AGG | - | chr3.1:20341237-20341256 | None:intergenic | 60.0% |
| ! | GATTCGCTGGCTGGCGGTTC+AGG | + | chr3.1:20341823-20341842 | MS.gene79059:CDS | 65.0% |
| ! | TGCGTTGAGGTGGTGGCCTG+CGG | - | chr3.1:20341666-20341685 | None:intergenic | 65.0% |
| GCTGCTGCCAACTGCCCCGG+TGG | + | chr3.1:20338154-20338173 | MS.gene79059:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 20336909 | 20342179 | 20336909 | ID=MS.gene79059 |
| chr3.1 | mRNA | 20336909 | 20342179 | 20336909 | ID=MS.gene79059.t1;Parent=MS.gene79059 |
| chr3.1 | exon | 20336909 | 20336919 | 20336909 | ID=MS.gene79059.t1.exon1;Parent=MS.gene79059.t1 |
| chr3.1 | CDS | 20336909 | 20336919 | 20336909 | ID=cds.MS.gene79059.t1;Parent=MS.gene79059.t1 |
| chr3.1 | exon | 20337522 | 20337606 | 20337522 | ID=MS.gene79059.t1.exon2;Parent=MS.gene79059.t1 |
| chr3.1 | CDS | 20337522 | 20337606 | 20337522 | ID=cds.MS.gene79059.t1;Parent=MS.gene79059.t1 |
| chr3.1 | exon | 20337866 | 20338602 | 20337866 | ID=MS.gene79059.t1.exon3;Parent=MS.gene79059.t1 |
| chr3.1 | CDS | 20337866 | 20338602 | 20337866 | ID=cds.MS.gene79059.t1;Parent=MS.gene79059.t1 |
| chr3.1 | exon | 20338703 | 20338772 | 20338703 | ID=MS.gene79059.t1.exon4;Parent=MS.gene79059.t1 |
| chr3.1 | CDS | 20338703 | 20338772 | 20338703 | ID=cds.MS.gene79059.t1;Parent=MS.gene79059.t1 |
| chr3.1 | exon | 20341628 | 20342179 | 20341628 | ID=MS.gene79059.t1.exon5;Parent=MS.gene79059.t1 |
| chr3.1 | CDS | 20341628 | 20342179 | 20341628 | ID=cds.MS.gene79059.t1;Parent=MS.gene79059.t1 |
| Gene Sequence |
| Protein sequence |
