Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79060.t1 | XP_003599126.2 | 99.7 | 357 | 1 | 0 | 1 | 357 | 1 | 357 | 8.80E-197 | 696 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79060.t1 | E0X9N4 | 66.9 | 356 | 112 | 2 | 1 | 356 | 1 | 350 | 2.7e-125 | 449.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79060.t1 | G7IWL8 | 99.7 | 357 | 1 | 0 | 1 | 357 | 1 | 357 | 6.4e-197 | 696.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene79060.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79060.t1 | MTR_3g028190 | 99.720 | 357 | 1 | 0 | 1 | 357 | 1 | 357 | 0.0 | 743 |
MS.gene79060.t1 | MTR_3g028170 | 52.599 | 327 | 130 | 7 | 1 | 322 | 1 | 307 | 3.19e-101 | 307 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79060.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.17e-164 | 463 |
MS.gene79060.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.17e-164 | 463 |
MS.gene79060.t1 | AT3G08505 | 62.640 | 356 | 99 | 3 | 1 | 356 | 1 | 322 | 1.17e-164 | 463 |
Find 89 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGATGTCTTTGGCAATTA+TGG | 0.200868 | 3.1:-20352762 | None:intergenic |
TTACTTGAGCTTTGCCTTGT+AGG | 0.248432 | 3.1:-20351419 | None:intergenic |
CAGAAAGGAGTTTGTGCTTA+TGG | 0.262469 | 3.1:+20350674 | MS.gene79060:CDS |
GACAATGCTTGCATCCTTTC+CGG | 0.265577 | 3.1:+20351062 | MS.gene79060:CDS |
GCGTATCGTGTATTAGAAAT+TGG | 0.271742 | 3.1:+20351257 | MS.gene79060:CDS |
TTGCGCAGATTCTTGATTCC+AGG | 0.326851 | 3.1:-20350891 | None:intergenic |
AGGTAGCTTTGCGTCATCTT+GGG | 0.329256 | 3.1:+20352723 | MS.gene79060:CDS |
TTGTCGTTCCAAGTGTTATT+TGG | 0.331364 | 3.1:+20351359 | MS.gene79060:CDS |
CGTAGTAGTAACCCAACATT+AGG | 0.336048 | 3.1:+20351280 | MS.gene79060:CDS |
GAGGTAGCTTTGCGTCATCT+TGG | 0.340448 | 3.1:+20352722 | MS.gene79060:CDS |
CTAACATGCATTTAAGTTGA+AGG | 0.345906 | 3.1:+20352892 | MS.gene79060:CDS |
GTTGTATCACCAACATTATT+CGG | 0.348521 | 3.1:-20350547 | None:intergenic |
ATTTGTTCATTTGCTGCTGC+TGG | 0.363377 | 3.1:+20350977 | MS.gene79060:CDS |
CTTTGTAAGTTCTTTGCTCA+TGG | 0.382149 | 3.1:+20350472 | MS.gene79060:CDS |
ATATGTTCTTCTCTTTCTTC+AGG | 0.386226 | 3.1:-20351085 | None:intergenic |
TTGATTCCAGGCTTGTTCAC+TGG | 0.388041 | 3.1:-20350879 | None:intergenic |
GGCGAAGGAAACTGCCCTTT+CGG | 0.397193 | 3.1:+20352063 | MS.gene79060:CDS |
GGATGTTAATAGCACATTGC+GGG | 0.414993 | 3.1:+20351306 | MS.gene79060:CDS |
AGAGAGAAACCTGATGTCTT+TGG | 0.415002 | 3.1:-20352771 | None:intergenic |
TGATTCCAGGCTTGTTCACT+GGG | 0.416070 | 3.1:-20350878 | None:intergenic |
TTCTTCCCAGTGAACAAGCC+TGG | 0.423135 | 3.1:+20350873 | MS.gene79060:CDS |
GTTTCAGAATCGGCTGTACT+TGG | 0.435930 | 3.1:+20350782 | MS.gene79060:CDS |
ACGGCAGCTGAGCGTAAGTT+TGG | 0.437819 | 3.1:+20351205 | MS.gene79060:CDS |
GTGCTTATGGTAGTCGCTGC+AGG | 0.448946 | 3.1:+20350687 | MS.gene79060:CDS |
CTGCGCAACTTGACTTCCTA+AGG | 0.449537 | 3.1:+20350906 | MS.gene79060:CDS |
CTCATGGAGCGTGTCTGAAA+GGG | 0.457791 | 3.1:+20350488 | MS.gene79060:CDS |
TGAAACAAGGGGCTGGTGTT+CGG | 0.458109 | 3.1:-20350765 | None:intergenic |
TAACATCCATCCCTAATGTT+GGG | 0.466091 | 3.1:-20351291 | None:intergenic |
CCAGCCCCTTGTTTCAGAAT+CGG | 0.469602 | 3.1:+20350772 | MS.gene79060:CDS |
CGTCATCTTGGGGCTGCAGA+TGG | 0.471622 | 3.1:+20352734 | MS.gene79060:CDS |
TGTTCGGTTATTGAAGAAGA+TGG | 0.473750 | 3.1:-20350749 | None:intergenic |
GGAAGATGATGTTGTTCAAT+CGG | 0.474976 | 3.1:+20350928 | MS.gene79060:CDS |
CCATAATTGCCAAAGACATC+AGG | 0.475198 | 3.1:+20352762 | MS.gene79060:CDS |
GAACAACATCATCTTCCCTT+AGG | 0.486955 | 3.1:-20350922 | None:intergenic |
TTAACATCCATCCCTAATGT+TGG | 0.488690 | 3.1:-20351292 | None:intergenic |
TAAGATAGCTTGCGACAGAT+AGG | 0.489220 | 3.1:-20351334 | None:intergenic |
CGGTACCAGCTGCTTCTACA+AGG | 0.490373 | 3.1:+20352083 | MS.gene79060:CDS |
GCAGCAGCAAATGAACAAAT+CGG | 0.492646 | 3.1:-20350974 | None:intergenic |
ACATGATGCCATCAGGTTGT+CGG | 0.519944 | 3.1:+20352860 | MS.gene79060:intron |
GCTCATGGAGCGTGTCTGAA+AGG | 0.521682 | 3.1:+20350487 | MS.gene79060:CDS |
TCTCTTTCTTCAGGCCGGAA+AGG | 0.522386 | 3.1:-20351076 | None:intergenic |
AACTTAAATGCATGTTAGCA+AGG | 0.524697 | 3.1:-20352887 | None:intergenic |
CAACACCATTCGATGTAACT+CGG | 0.526387 | 3.1:-20350811 | None:intergenic |
GTTCTTCTCTTTCTTCAGGC+CGG | 0.528004 | 3.1:-20351081 | None:intergenic |
GAACAAATCGGAAGCTCAGA+AGG | 0.538088 | 3.1:-20350962 | None:intergenic |
ATTTACCTTGTAGAAGCAGC+TGG | 0.539288 | 3.1:-20352088 | None:intergenic |
TACAGCCGATTCTGAAACAA+GGG | 0.542302 | 3.1:-20350777 | None:intergenic |
GTAGTAGTAACCCAACATTA+GGG | 0.548465 | 3.1:+20351281 | MS.gene79060:CDS |
GCGTGTTCTTTCAAAGCCTA+CGG | 0.552472 | 3.1:+20351186 | MS.gene79060:CDS |
GGTAGCTTTGCGTCATCTTG+GGG | 0.557694 | 3.1:+20352724 | MS.gene79060:CDS |
TGTTCACTGGGAAGAACAAA+GGG | 0.561359 | 3.1:-20350866 | None:intergenic |
CCGATTCTGAAACAAGGGGC+TGG | 0.563910 | 3.1:-20350772 | None:intergenic |
TAGAAGCAGCTGGTACCGAA+AGG | 0.585374 | 3.1:-20352078 | None:intergenic |
TATCACCAACATTATTCGGA+GGG | 0.587301 | 3.1:-20350543 | None:intergenic |
ATATCGTGATGGCCGTCTTG+AGG | 0.591471 | 3.1:+20352700 | MS.gene79060:CDS |
AGAAGCAGCTGGTACCGAAA+GGG | 0.591507 | 3.1:-20352077 | None:intergenic |
CAAGCATTGTCTTCCACATG+AGG | 0.592492 | 3.1:-20351050 | None:intergenic |
TTGTTCACTGGGAAGAACAA+AGG | 0.593124 | 3.1:-20350867 | None:intergenic |
ATCACCAACATTATTCGGAG+GGG | 0.593920 | 3.1:-20350542 | None:intergenic |
TAGTAACCCAACATTAGGGA+TGG | 0.597655 | 3.1:+20351285 | MS.gene79060:CDS |
AATACCCGAGTTACATCGAA+TGG | 0.599856 | 3.1:+20350806 | MS.gene79060:CDS |
TATTGAAGAAGATGGAGTAG+AGG | 0.608961 | 3.1:-20350741 | None:intergenic |
GTAGCATACCAAATAACACT+TGG | 0.613633 | 3.1:-20351367 | None:intergenic |
AAGCATTGTCTTCCACATGA+GGG | 0.614385 | 3.1:-20351049 | None:intergenic |
TCGTGATGGCCGTCTTGAGG+AGG | 0.617371 | 3.1:+20352703 | MS.gene79060:CDS |
CATAAATCTCCGTGTACATG+AGG | 0.617746 | 3.1:-20351025 | None:intergenic |
AACACCATTCGATGTAACTC+GGG | 0.620122 | 3.1:-20350810 | None:intergenic |
TGCGCAACTTGACTTCCTAA+GGG | 0.626387 | 3.1:+20350907 | MS.gene79060:CDS |
GTATCACCAACATTATTCGG+AGG | 0.630350 | 3.1:-20350544 | None:intergenic |
AGCATTGTCTTCCACATGAG+GGG | 0.631001 | 3.1:-20351048 | None:intergenic |
GGAAATCATTGATACCTACA+AGG | 0.631452 | 3.1:+20351405 | MS.gene79060:CDS |
ATAATTTCGCCATGTCAAAG+AGG | 0.631521 | 3.1:+20349442 | None:intergenic |
AACTTACGCTCAGCTGCCGT+AGG | 0.632534 | 3.1:-20351202 | None:intergenic |
GGAGATTTATGCCCCTCATG+TGG | 0.636320 | 3.1:+20351037 | MS.gene79060:CDS |
TGAGGACATTGTTCCCCTCG+TGG | 0.637218 | 3.1:-20351007 | None:intergenic |
GTACAGCCGATTCTGAAACA+AGG | 0.638170 | 3.1:-20350778 | None:intergenic |
CTGCTGGAAACTGTCCACGA+GGG | 0.638932 | 3.1:+20350993 | MS.gene79060:CDS |
TGCTGGAAACTGTCCACGAG+GGG | 0.639094 | 3.1:+20350994 | MS.gene79060:CDS |
CTAATACACGATACGCAGAA+CGG | 0.640856 | 3.1:-20351250 | None:intergenic |
TCATGGAGCGTGTCTGAAAG+GGG | 0.647946 | 3.1:+20350489 | MS.gene79060:CDS |
TCTATCTTACCTCTTTGACA+TGG | 0.648394 | 3.1:-20349451 | None:intergenic |
GAACAATGTCCTCATGTACA+CGG | 0.651566 | 3.1:+20351016 | MS.gene79060:CDS |
TTGCAGCATGCATATCGTGA+TGG | 0.670081 | 3.1:+20352689 | MS.gene79060:intron |
AAATAAGCAAAAGCATCTCG+AGG | 0.674626 | 3.1:+20351120 | MS.gene79060:CDS |
GCTGCTGGAAACTGTCCACG+AGG | 0.694625 | 3.1:+20350992 | MS.gene79060:CDS |
TGGATGTTAATAGCACATTG+CGG | 0.695653 | 3.1:+20351305 | MS.gene79060:CDS |
GCTTTGAAAGAACACGCTCG+AGG | 0.700611 | 3.1:-20351180 | None:intergenic |
ACAGCCGATTCTGAAACAAG+GGG | 0.720447 | 3.1:-20350776 | None:intergenic |
GCAAAGCTACCTCCTCAAGA+CGG | 0.724386 | 3.1:-20352712 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTTGATTATTTTTTTATAT+GGG | + | chr3.1:20349515-20349534 | MS.gene79060:intron | 10.0% |
!!! | TTCTTGATTATTTTTTTATA+TGG | + | chr3.1:20349514-20349533 | MS.gene79060:intron | 10.0% |
!! | AAGTATAACATAAACTAATT+AGG | - | chr3.1:20352667-20352686 | None:intergenic | 15.0% |
!! | TAAACATCATAATTAAACTT+AGG | - | chr3.1:20352588-20352607 | None:intergenic | 15.0% |
!! | TTTATGTAATTAATTGTCTT+TGG | + | chr3.1:20350435-20350454 | MS.gene79060:intron | 15.0% |
!!! | AATAAACTAAAAACAACTTT+TGG | + | chr3.1:20351856-20351875 | MS.gene79060:intron | 15.0% |
!!! | CTTGATTATTTTTTTATATG+GGG | + | chr3.1:20349516-20349535 | MS.gene79060:intron | 15.0% |
!!! | TAGATTTTTTTTTGGATTAT+TGG | + | chr3.1:20349675-20349694 | MS.gene79060:intron | 15.0% |
!!! | TGCAAATTTTAAATATACTT+GGG | - | chr3.1:20352542-20352561 | None:intergenic | 15.0% |
!!! | TTGCAAATTTTAAATATACT+TGG | - | chr3.1:20352543-20352562 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTTTTGCAAGTT+TGG | + | chr3.1:20349908-20349927 | MS.gene79060:intron | 15.0% |
!! | AAGTTTGGTAAATAGTTATT+TGG | + | chr3.1:20349923-20349942 | MS.gene79060:intron | 20.0% |
!! | ATAACTCAATAACCATAAAT+CGG | - | chr3.1:20350595-20350614 | None:intergenic | 20.0% |
!! | ATATTAGATCATGAATCAAT+TGG | - | chr3.1:20351495-20351514 | None:intergenic | 20.0% |
!! | ATCATAATTAAACTTAGGTA+GGG | - | chr3.1:20352583-20352602 | None:intergenic | 20.0% |
!! | ATGTATTAAGTTAGTGAAAT+TGG | - | chr3.1:20352844-20352863 | None:intergenic | 20.0% |
!! | TCATGATTAAAATGAATTCA+TGG | - | chr3.1:20350312-20350331 | None:intergenic | 20.0% |
!! | TTATATCTGAGTTTATATAC+TGG | - | chr3.1:20351937-20351956 | None:intergenic | 20.0% |
!! | TTGATTATAACTCAGAAATT+AGG | + | chr3.1:20349635-20349654 | MS.gene79060:intron | 20.0% |
!! | TTTGGAAAGAAAAGTAAAAT+GGG | - | chr3.1:20352159-20352178 | None:intergenic | 20.0% |
!!! | AAAAAGTCTCTAGAATAAAA+AGG | - | chr3.1:20350248-20350267 | None:intergenic | 20.0% |
!!! | AAAAGTCTCTAGAATAAAAA+GGG | - | chr3.1:20350247-20350266 | None:intergenic | 20.0% |
!!! | AAACAATTGAAATTTGTTCA+CGG | - | chr3.1:20352279-20352298 | None:intergenic | 20.0% |
!!! | ACTATTATGTTGCTTATATT+AGG | - | chr3.1:20351663-20351682 | None:intergenic | 20.0% |
!!! | ATGCAAAGTAGATTTTTTTT+TGG | + | chr3.1:20349667-20349686 | MS.gene79060:intron | 20.0% |
!!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr3.1:20351698-20351717 | None:intergenic | 20.0% |
!!! | TTAAGTTGTTTATCCAAATA+GGG | - | chr3.1:20351697-20351716 | None:intergenic | 20.0% |
!!! | TTATAGCTTTTGAATTTTCA+CGG | + | chr3.1:20350096-20350115 | MS.gene79060:intron | 20.0% |
!!! | TTTATTCTAGAGACTTTTTA+AGG | + | chr3.1:20350249-20350268 | MS.gene79060:intron | 20.0% |
!!! | TTTTGCTGAAATGTTTATTT+TGG | + | chr3.1:20351989-20352008 | MS.gene79060:intron | 20.0% |
!!! | TTTTGGAAAGAAAAGTAAAA+TGG | - | chr3.1:20352160-20352179 | None:intergenic | 20.0% |
!!! | TTTTTTTTTCTTCAATCATG+TGG | + | chr3.1:20349596-20349615 | MS.gene79060:intron | 20.0% |
! | AAGTTAGTGAAATTGGAAAA+TGG | - | chr3.1:20352837-20352856 | None:intergenic | 25.0% |
! | AATTCAAAAGCTATAAAGAG+TGG | - | chr3.1:20350092-20350111 | None:intergenic | 25.0% |
! | AATTTGATATTTCTCCTATC+TGG | + | chr3.1:20349818-20349837 | MS.gene79060:intron | 25.0% |
! | AGGAATTGAAAGTTGAAAAT+TGG | + | chr3.1:20349875-20349894 | MS.gene79060:intron | 25.0% |
! | ATGATATAGCTTATTGAAGT+AGG | + | chr3.1:20349949-20349968 | MS.gene79060:intron | 25.0% |
! | ATGCTGAATAAGTTGTTATA+AGG | + | chr3.1:20351556-20351575 | MS.gene79060:intron | 25.0% |
! | ATTTGATATTTCTCCTATCT+GGG | + | chr3.1:20349819-20349838 | MS.gene79060:intron | 25.0% |
! | ATTTGTTCAATACCATTTGT+AGG | + | chr3.1:20352013-20352032 | MS.gene79060:intron | 25.0% |
! | CATCATAATTAAACTTAGGT+AGG | - | chr3.1:20352584-20352603 | None:intergenic | 25.0% |
! | TATGCATATGTTTATTTGAG+CGG | + | chr3.1:20350023-20350042 | MS.gene79060:intron | 25.0% |
! | TCATAATTAAACTTAGGTAG+GGG | - | chr3.1:20352582-20352601 | None:intergenic | 25.0% |
! | TGCTGAATAAGTTGTTATAA+GGG | + | chr3.1:20351557-20351576 | MS.gene79060:intron | 25.0% |
!! | AATGTCATAAAGCATCAATT+GGG | - | chr3.1:20352210-20352229 | None:intergenic | 25.0% |
!! | ACATAAAACTATCTAAGGTT+TGG | - | chr3.1:20351521-20351540 | None:intergenic | 25.0% |
!! | AGTGTTTTCATAAGTTATCT+TGG | + | chr3.1:20351821-20351840 | MS.gene79060:intron | 25.0% |
!! | ATATGCACATTTTATCAGAA+AGG | + | chr3.1:20350659-20350678 | MS.gene79060:CDS | 25.0% |
!! | CTATACGATAAGTAAAGTTT+TGG | - | chr3.1:20352177-20352196 | None:intergenic | 25.0% |
!! | TAATGTCATAAAGCATCAAT+TGG | - | chr3.1:20352211-20352230 | None:intergenic | 25.0% |
!! | TTTGAAGTTGGAATTCTATT+AGG | + | chr3.1:20349705-20349724 | MS.gene79060:intron | 25.0% |
!!! | AAAGTCTCTAGAATAAAAAG+GGG | - | chr3.1:20350246-20350265 | None:intergenic | 25.0% |
!!! | ATTGGATAAGTTTTTGAAGT+TGG | + | chr3.1:20349693-20349712 | MS.gene79060:intron | 25.0% |
AAAAGTAAAATGGGTCAAAC+AGG | - | chr3.1:20352150-20352169 | None:intergenic | 30.0% | |
AAAGAAAAGAAAACCCAGAT+AGG | - | chr3.1:20349835-20349854 | None:intergenic | 30.0% | |
AAAGTAAAATGGGTCAAACA+GGG | - | chr3.1:20352149-20352168 | None:intergenic | 30.0% | |
AACTTAAATGCATGTTAGCA+AGG | - | chr3.1:20352890-20352909 | None:intergenic | 30.0% | |
AAGACATAAATAGATGCTGT+GGG | - | chr3.1:20351456-20351475 | None:intergenic | 30.0% | |
ACAACTTATTCAGCATAGTA+TGG | - | chr3.1:20351552-20351571 | None:intergenic | 30.0% | |
ATATGTTCTTCTCTTTCTTC+AGG | - | chr3.1:20351088-20351107 | None:intergenic | 30.0% | |
ATCGACATTAATCCTTATCA+CGG | - | chr3.1:20350275-20350294 | None:intergenic | 30.0% | |
CACAGACATAAAACTATCTA+AGG | - | chr3.1:20351526-20351545 | None:intergenic | 30.0% | |
CTTTGGTCTCTATATGAAAA+AGG | - | chr3.1:20352240-20352259 | None:intergenic | 30.0% | |
GCAAACTGAATTTAGTACTT+TGG | - | chr3.1:20352257-20352276 | None:intergenic | 30.0% | |
GCTGAATAAGTTGTTATAAG+GGG | + | chr3.1:20351558-20351577 | MS.gene79060:intron | 30.0% | |
GTTGTATCACCAACATTATT+CGG | - | chr3.1:20350550-20350569 | None:intergenic | 30.0% | |
TAACCAACATTGTTGAATAC+CGG | - | chr3.1:20352345-20352364 | None:intergenic | 30.0% | |
TAATGACTGCAACTTATTTC+CGG | + | chr3.1:20352323-20352342 | MS.gene79060:intron | 30.0% | |
TGCAAATTGTTGTCAAATAG+AGG | + | chr3.1:20352426-20352445 | MS.gene79060:intron | 30.0% | |
TGCTACAAGTGAAGAAAAAA+TGG | + | chr3.1:20351384-20351403 | MS.gene79060:CDS | 30.0% | |
TTGATTAGAGCTCAGAAATT+AGG | + | chr3.1:20349855-20349874 | MS.gene79060:intron | 30.0% | |
! | CATGGTTAGAAGGTTTTTAA+CGG | + | chr3.1:20350354-20350373 | MS.gene79060:intron | 30.0% |
!! | AATTGTCTTTGGAATCTTTC+AGG | + | chr3.1:20350446-20350465 | MS.gene79060:intron | 30.0% |
!! | ATGATTTGTGTTTTCGTTTG+CGG | + | chr3.1:20350328-20350347 | MS.gene79060:intron | 30.0% |
!! | ATTGTCTTTGGAATCTTTCA+GGG | + | chr3.1:20350447-20350466 | MS.gene79060:intron | 30.0% |
ACTTAATACATGATGCCATC+AGG | + | chr3.1:20352853-20352872 | MS.gene79060:intron | 35.0% | |
AGCAAAAAGCTAGACACATT+AGG | - | chr3.1:20351976-20351995 | None:intergenic | 35.0% | |
ATTGAAGTAGGAACACAATC+AGG | + | chr3.1:20349961-20349980 | MS.gene79060:intron | 35.0% | |
CAAAGATAAGAACCAGGATA+AGG | - | chr3.1:20352798-20352817 | None:intergenic | 35.0% | |
CTTTGTAAGTTCTTTGCTCA+TGG | + | chr3.1:20350472-20350491 | MS.gene79060:CDS | 35.0% | |
GAAGACATAAATAGATGCTG+TGG | - | chr3.1:20351457-20351476 | None:intergenic | 35.0% | |
GCAAAAAGCTAGACACATTA+GGG | - | chr3.1:20351975-20351994 | None:intergenic | 35.0% | |
GCAATCAATTGACCTACAAA+TGG | - | chr3.1:20352028-20352047 | None:intergenic | 35.0% | |
GCGTATCGTGTATTAGAAAT+TGG | + | chr3.1:20351257-20351276 | MS.gene79060:CDS | 35.0% | |
GGAAATCATTGATACCTACA+AGG | + | chr3.1:20351405-20351424 | MS.gene79060:CDS | 35.0% | |
GGAAGATGATGTTGTTCAAT+CGG | + | chr3.1:20350928-20350947 | MS.gene79060:CDS | 35.0% | |
GGTACTAGTATTATCAATCG+CGG | - | chr3.1:20352521-20352540 | None:intergenic | 35.0% | |
GGTATAGCACTATAGTGTAA+GGG | + | chr3.1:20352466-20352485 | MS.gene79060:intron | 35.0% | |
GTAGCATACCAAATAACACT+TGG | - | chr3.1:20351370-20351389 | None:intergenic | 35.0% | |
GTAGTAGTAACCCAACATTA+GGG | + | chr3.1:20351281-20351300 | MS.gene79060:CDS | 35.0% | |
TAACATCCATCCCTAATGTT+GGG | - | chr3.1:20351294-20351313 | None:intergenic | 35.0% | |
TATCACCAACATTATTCGGA+GGG | - | chr3.1:20350546-20350565 | None:intergenic | 35.0% | |
TATTGAAGAAGATGGAGTAG+AGG | - | chr3.1:20350744-20350763 | None:intergenic | 35.0% | |
TGAAATGTCCAACATAGAAG+AGG | - | chr3.1:20350572-20350591 | None:intergenic | 35.0% | |
TGATACAACCTCTTCTATGT+TGG | + | chr3.1:20350561-20350580 | MS.gene79060:intron | 35.0% | |
TGGATGTTAATAGCACATTG+CGG | + | chr3.1:20351305-20351324 | MS.gene79060:CDS | 35.0% | |
TGTTCGGTTATTGAAGAAGA+TGG | - | chr3.1:20350752-20350771 | None:intergenic | 35.0% | |
TTAACATCCATCCCTAATGT+TGG | - | chr3.1:20351295-20351314 | None:intergenic | 35.0% | |
TTGAAGTAGGAACACAATCA+GGG | + | chr3.1:20349962-20349981 | MS.gene79060:intron | 35.0% | |
TTTCCGGTATTCAACAATGT+TGG | + | chr3.1:20352339-20352358 | MS.gene79060:intron | 35.0% | |
! | ACAATCAGGGTGTTAAATCT+TGG | + | chr3.1:20349975-20349994 | MS.gene79060:intron | 35.0% |
! | ATGTTGGTTATTAGCAGCTA+TGG | + | chr3.1:20352355-20352374 | MS.gene79060:intron | 35.0% |
! | ATTGTGAGTTTTCTCATGAC+TGG | + | chr3.1:20350515-20350534 | MS.gene79060:CDS | 35.0% |
! | CTTATCCTGGTTCTTATCTT+TGG | + | chr3.1:20352796-20352815 | MS.gene79060:intron | 35.0% |
! | TAGGCTCTAGTTGTTCTTTA+AGG | - | chr3.1:20352648-20352667 | None:intergenic | 35.0% |
! | TTGTCGTTCCAAGTGTTATT+TGG | + | chr3.1:20351359-20351378 | MS.gene79060:CDS | 35.0% |
!! | AAATAAGCAAAAGCATCTCG+AGG | + | chr3.1:20351120-20351139 | MS.gene79060:CDS | 35.0% |
!! | AGCATTGATATGCATGTGTA+GGG | + | chr3.1:20351599-20351618 | MS.gene79060:intron | 35.0% |
!! | TAGCATTGATATGCATGTGT+AGG | + | chr3.1:20351598-20351617 | MS.gene79060:intron | 35.0% |
!! | TTGGACATTTCACCGATTTA+TGG | + | chr3.1:20350580-20350599 | MS.gene79060:intron | 35.0% |
!!! | GATTGCAAGCATTTTGACTT+TGG | + | chr3.1:20352042-20352061 | MS.gene79060:CDS | 35.0% |
AACACCATTCGATGTAACTC+GGG | - | chr3.1:20350813-20350832 | None:intergenic | 40.0% | |
AAGCATGTGTGAGACTGTTT+GGG | - | chr3.1:20351911-20351930 | None:intergenic | 40.0% | |
AATACCCGAGTTACATCGAA+TGG | + | chr3.1:20350806-20350825 | MS.gene79060:CDS | 40.0% | |
AGAGAGAAACCTGATGTCTT+TGG | - | chr3.1:20352774-20352793 | None:intergenic | 40.0% | |
ATAAGAACAGTCTGCACACA+AGG | - | chr3.1:20350416-20350435 | None:intergenic | 40.0% | |
ATCACCAACATTATTCGGAG+GGG | - | chr3.1:20350545-20350564 | None:intergenic | 40.0% | |
ATCTTGGAAATATCTCTCCC+CGG | + | chr3.1:20349991-20350010 | MS.gene79060:intron | 40.0% | |
ATTTACCTTGTAGAAGCAGC+TGG | - | chr3.1:20352091-20352110 | None:intergenic | 40.0% | |
CAACACCATTCGATGTAACT+CGG | - | chr3.1:20350814-20350833 | None:intergenic | 40.0% | |
CAGAAAGGAGTTTGTGCTTA+TGG | + | chr3.1:20350674-20350693 | MS.gene79060:CDS | 40.0% | |
CATAAATCTCCGTGTACATG+AGG | - | chr3.1:20351028-20351047 | None:intergenic | 40.0% | |
CCATAATTGCCAAAGACATC+AGG | + | chr3.1:20352762-20352781 | MS.gene79060:CDS | 40.0% | |
CCTGATGTCTTTGGCAATTA+TGG | - | chr3.1:20352765-20352784 | None:intergenic | 40.0% | |
CGGTATAGCACTATAGTGTA+AGG | + | chr3.1:20352465-20352484 | MS.gene79060:intron | 40.0% | |
CGTAGTAGTAACCCAACATT+AGG | + | chr3.1:20351280-20351299 | MS.gene79060:CDS | 40.0% | |
CTAATACACGATACGCAGAA+CGG | - | chr3.1:20351253-20351272 | None:intergenic | 40.0% | |
GAACAACATCATCTTCCCTT+AGG | - | chr3.1:20350925-20350944 | None:intergenic | 40.0% | |
GAACAATGTCCTCATGTACA+CGG | + | chr3.1:20351016-20351035 | MS.gene79060:CDS | 40.0% | |
GCAGCAGCAAATGAACAAAT+CGG | - | chr3.1:20350977-20350996 | None:intergenic | 40.0% | |
GGATGTTAATAGCACATTGC+GGG | + | chr3.1:20351306-20351325 | MS.gene79060:CDS | 40.0% | |
GTATCACCAACATTATTCGG+AGG | - | chr3.1:20350547-20350566 | None:intergenic | 40.0% | |
TAAAATGGGTCAAACAGGGA+GGG | - | chr3.1:20352145-20352164 | None:intergenic | 40.0% | |
TAAGCATGTGTGAGACTGTT+TGG | - | chr3.1:20351912-20351931 | None:intergenic | 40.0% | |
TAGTAACCCAACATTAGGGA+TGG | + | chr3.1:20351285-20351304 | MS.gene79060:CDS | 40.0% | |
TGTTCACTGGGAAGAACAAA+GGG | - | chr3.1:20350869-20350888 | None:intergenic | 40.0% | |
TTACTTGAGCTTTGCCTTGT+AGG | - | chr3.1:20351422-20351441 | None:intergenic | 40.0% | |
TTCGTATCGCAGAACAATAG+CGG | - | chr3.1:20352401-20352420 | None:intergenic | 40.0% | |
TTGTTCACTGGGAAGAACAA+AGG | - | chr3.1:20350870-20350889 | None:intergenic | 40.0% | |
TTTGAGCGGTGAAAAACTTG+CGG | + | chr3.1:20350037-20350056 | MS.gene79060:intron | 40.0% | |
TTTGCGGAAACATGGTTAGA+AGG | + | chr3.1:20350344-20350363 | MS.gene79060:intron | 40.0% | |
! | AAGCATTGTCTTCCACATGA+GGG | - | chr3.1:20351052-20351071 | None:intergenic | 40.0% |
! | AAGTTGCAGTCATTAGCTTC+AGG | - | chr3.1:20352318-20352337 | None:intergenic | 40.0% |
! | ATTTGTTCATTTGCTGCTGC+TGG | + | chr3.1:20350977-20350996 | MS.gene79060:CDS | 40.0% |
! | GAAAATGGTCAAAGAGCACA+AGG | - | chr3.1:20352822-20352841 | None:intergenic | 40.0% |
! | GCATTGATATGCATGTGTAG+GGG | + | chr3.1:20351600-20351619 | MS.gene79060:intron | 40.0% |
! | TAAGATAGCTTGCGACAGAT+AGG | - | chr3.1:20351337-20351356 | None:intergenic | 40.0% |
! | TCTAGAATAAAAAGGGGCAC+CGG | - | chr3.1:20350240-20350259 | None:intergenic | 40.0% |
! | TGTTTTCGTTTGCGGAAACA+TGG | + | chr3.1:20350336-20350355 | MS.gene79060:intron | 40.0% |
!! | TACAGCCGATTCTGAAACAA+GGG | - | chr3.1:20350780-20350799 | None:intergenic | 40.0% |
!! | TAGACACATTAGGGCTAGTT+TGG | - | chr3.1:20351966-20351985 | None:intergenic | 40.0% |
!!! | AAGCATTTTGACTTTGGCGA+AGG | + | chr3.1:20352048-20352067 | MS.gene79060:CDS | 40.0% |
!!! | GACTTTTTAAGGCCGTGATA+AGG | + | chr3.1:20350260-20350279 | MS.gene79060:intron | 40.0% |
AAAGCCCCTCCGAATAATGT+TGG | + | chr3.1:20350538-20350557 | MS.gene79060:intron | 45.0% | |
AAGGAAATCCGACAACCTGA+TGG | - | chr3.1:20352871-20352890 | None:intergenic | 45.0% | |
AGACATGCATAGCGAGTGTT+TGG | - | chr3.1:20350166-20350185 | None:intergenic | 45.0% | |
AGACTGTTTGGGAGAGCTTA+AGG | - | chr3.1:20351900-20351919 | None:intergenic | 45.0% | |
AGCATTGTCTTCCACATGAG+GGG | - | chr3.1:20351051-20351070 | None:intergenic | 45.0% | |
ATAGCGAGTGTTTGGGAAAG+CGG | - | chr3.1:20350158-20350177 | None:intergenic | 45.0% | |
CAAGGCCAAAGATAAGAACC+AGG | - | chr3.1:20352804-20352823 | None:intergenic | 45.0% | |
GAACAAATCGGAAGCTCAGA+AGG | - | chr3.1:20350965-20350984 | None:intergenic | 45.0% | |
GACAATGCTTGCATCCTTTC+CGG | + | chr3.1:20351062-20351081 | MS.gene79060:CDS | 45.0% | |
GACATGCATAGCGAGTGTTT+GGG | - | chr3.1:20350165-20350184 | None:intergenic | 45.0% | |
GCGTGTTCTTTCAAAGCCTA+CGG | + | chr3.1:20351186-20351205 | MS.gene79060:CDS | 45.0% | |
GGTTTCTCTCTACCTTATCC+TGG | + | chr3.1:20352783-20352802 | MS.gene79060:intron | 45.0% | |
GTAAAATGGGTCAAACAGGG+AGG | - | chr3.1:20352146-20352165 | None:intergenic | 45.0% | |
GTTCAGAGTGATGCCCTATT+TGG | + | chr3.1:20351681-20351700 | MS.gene79060:intron | 45.0% | |
GTTCTTCTCTTTCTTCAGGC+CGG | - | chr3.1:20351084-20351103 | None:intergenic | 45.0% | |
GTTTCAGAATCGGCTGTACT+TGG | + | chr3.1:20350782-20350801 | MS.gene79060:CDS | 45.0% | |
TAGTGCTATACCGCTGCTAT+AGG | - | chr3.1:20352458-20352477 | None:intergenic | 45.0% | |
TCTTGGAAATATCTCTCCCC+GGG | + | chr3.1:20349992-20350011 | MS.gene79060:intron | 45.0% | |
TGCGCAACTTGACTTCCTAA+GGG | + | chr3.1:20350907-20350926 | MS.gene79060:CDS | 45.0% | |
TTGCAGCATGCATATCGTGA+TGG | + | chr3.1:20352689-20352708 | MS.gene79060:intron | 45.0% | |
TTGCGCAGATTCTTGATTCC+AGG | - | chr3.1:20350894-20350913 | None:intergenic | 45.0% | |
! | AATGCTGCTTGAATGCACGT+TGG | + | chr3.1:20350122-20350141 | MS.gene79060:intron | 45.0% |
! | ACATGATGCCATCAGGTTGT+CGG | + | chr3.1:20352860-20352879 | MS.gene79060:intron | 45.0% |
! | AGGTAGCTTTGCGTCATCTT+GGG | + | chr3.1:20352723-20352742 | MS.gene79060:CDS | 45.0% |
! | CAAGCATTGTCTTCCACATG+AGG | - | chr3.1:20351053-20351072 | None:intergenic | 45.0% |
! | GTGCTTGTGTTGTCTTGTTG+TGG | + | chr3.1:20350633-20350652 | MS.gene79060:intron | 45.0% |
! | TGATTCCAGGCTTGTTCACT+GGG | - | chr3.1:20350881-20350900 | None:intergenic | 45.0% |
! | TTGATTCCAGGCTTGTTCAC+TGG | - | chr3.1:20350882-20350901 | None:intergenic | 45.0% |
!! | ACAGCCGATTCTGAAACAAG+GGG | - | chr3.1:20350779-20350798 | None:intergenic | 45.0% |
!! | GTACAGCCGATTCTGAAACA+AGG | - | chr3.1:20350781-20350800 | None:intergenic | 45.0% |
ATATCGTGATGGCCGTCTTG+AGG | + | chr3.1:20352700-20352719 | MS.gene79060:CDS | 50.0% | |
CGGTGAAAAACTTGCGGTGA+TGG | + | chr3.1:20350043-20350062 | MS.gene79060:intron | 50.0% | |
CTCATGGAGCGTGTCTGAAA+GGG | + | chr3.1:20350488-20350507 | MS.gene79060:CDS | 50.0% | |
CTGCGCAACTTGACTTCCTA+AGG | + | chr3.1:20350906-20350925 | MS.gene79060:CDS | 50.0% | |
CTTGGAAATATCTCTCCCCG+GGG | + | chr3.1:20349993-20350012 | MS.gene79060:intron | 50.0% | |
GAGGCAATAGCCTATAGCAG+CGG | + | chr3.1:20352445-20352464 | MS.gene79060:intron | 50.0% | |
GCAAAGCTACCTCCTCAAGA+CGG | - | chr3.1:20352715-20352734 | None:intergenic | 50.0% | |
GGAGATTTATGCCCCTCATG+TGG | + | chr3.1:20351037-20351056 | MS.gene79060:CDS | 50.0% | |
TCATGGAGCGTGTCTGAAAG+GGG | + | chr3.1:20350489-20350508 | MS.gene79060:CDS | 50.0% | |
TCTCTTTCTTCAGGCCGGAA+AGG | - | chr3.1:20351079-20351098 | None:intergenic | 50.0% | |
TTCTTCCCAGTGAACAAGCC+TGG | + | chr3.1:20350873-20350892 | MS.gene79060:CDS | 50.0% | |
TTGGAAATATCTCTCCCCGG+GGG | + | chr3.1:20349994-20350013 | MS.gene79060:intron | 50.0% | |
! | AGAAGCAGCTGGTACCGAAA+GGG | - | chr3.1:20352080-20352099 | None:intergenic | 50.0% |
! | ATATGCATAGCCTTACCCCC+GGG | - | chr3.1:20350012-20350031 | None:intergenic | 50.0% |
! | CATATGCATAGCCTTACCCC+CGG | - | chr3.1:20350013-20350032 | None:intergenic | 50.0% |
! | CCAGCCCCTTGTTTCAGAAT+CGG | + | chr3.1:20350772-20350791 | MS.gene79060:CDS | 50.0% |
! | GAGGTAGCTTTGCGTCATCT+TGG | + | chr3.1:20352722-20352741 | MS.gene79060:CDS | 50.0% |
! | GGTAGCTTTGCGTCATCTTG+GGG | + | chr3.1:20352724-20352743 | MS.gene79060:CDS | 50.0% |
! | TAGAAGCAGCTGGTACCGAA+AGG | - | chr3.1:20352081-20352100 | None:intergenic | 50.0% |
! | TGAAACAAGGGGCTGGTGTT+CGG | - | chr3.1:20350768-20350787 | None:intergenic | 50.0% |
!! | GAATAAAAAGGGGCACCGGA+TGG | - | chr3.1:20350236-20350255 | None:intergenic | 50.0% |
!! | GCTTTGAAAGAACACGCTCG+AGG | - | chr3.1:20351183-20351202 | None:intergenic | 50.0% |
AACTTACGCTCAGCTGCCGT+AGG | - | chr3.1:20351205-20351224 | None:intergenic | 55.0% | |
AATATCTCTCCCCGGGGGTA+AGG | + | chr3.1:20349999-20350018 | MS.gene79060:intron | 55.0% | |
AATGGGTCAAACAGGGAGGG+AGG | - | chr3.1:20352142-20352161 | None:intergenic | 55.0% | |
ACGGCAGCTGAGCGTAAGTT+TGG | + | chr3.1:20351205-20351224 | MS.gene79060:CDS | 55.0% | |
ATGGGTCAAACAGGGAGGGA+GGG | - | chr3.1:20352141-20352160 | None:intergenic | 55.0% | |
CGGTACCAGCTGCTTCTACA+AGG | + | chr3.1:20352083-20352102 | MS.gene79060:CDS | 55.0% | |
CTGCTGGAAACTGTCCACGA+GGG | + | chr3.1:20350993-20351012 | MS.gene79060:CDS | 55.0% | |
GCTCATGGAGCGTGTCTGAA+AGG | + | chr3.1:20350487-20350506 | MS.gene79060:CDS | 55.0% | |
GGCGAAGGAAACTGCCCTTT+CGG | + | chr3.1:20352063-20352082 | MS.gene79060:CDS | 55.0% | |
GTGCTTATGGTAGTCGCTGC+AGG | + | chr3.1:20350687-20350706 | MS.gene79060:CDS | 55.0% | |
TATCCTCCCCAGATTCCACC+TGG | + | chr3.1:20350185-20350204 | MS.gene79060:intron | 55.0% | |
TGAGGACATTGTTCCCCTCG+TGG | - | chr3.1:20351010-20351029 | None:intergenic | 55.0% | |
TGCTGGAAACTGTCCACGAG+GGG | + | chr3.1:20350994-20351013 | MS.gene79060:CDS | 55.0% | |
! | TATGCATAGCCTTACCCCCG+GGG | - | chr3.1:20350011-20350030 | None:intergenic | 55.0% |
!! | CCGATTCTGAAACAAGGGGC+TGG | - | chr3.1:20350775-20350794 | None:intergenic | 55.0% |
CGTCATCTTGGGGCTGCAGA+TGG | + | chr3.1:20352734-20352753 | MS.gene79060:CDS | 60.0% | |
CTCCCACCAGGTGGAATCTG+GGG | - | chr3.1:20350194-20350213 | None:intergenic | 60.0% | |
CTCCCCAGATTCCACCTGGT+GGG | + | chr3.1:20350189-20350208 | MS.gene79060:intron | 60.0% | |
GCTCCCACCAGGTGGAATCT+GGG | - | chr3.1:20350195-20350214 | None:intergenic | 60.0% | |
GCTGCTGGAAACTGTCCACG+AGG | + | chr3.1:20350992-20351011 | MS.gene79060:CDS | 60.0% | |
TCGTGATGGCCGTCTTGAGG+AGG | + | chr3.1:20352703-20352722 | MS.gene79060:CDS | 60.0% | |
ACCTGGTGGGAGCCTCTGGT+GGG | + | chr3.1:20350202-20350221 | MS.gene79060:intron | 65.0% | |
ATGGACGAGGCTCCCACCAG+AGG | - | chr3.1:20350217-20350236 | None:intergenic | 65.0% | |
CCACCAGGTGGAATCTGGGG+AGG | - | chr3.1:20350191-20350210 | None:intergenic | 65.0% | |
CCTCCCCAGATTCCACCTGG+TGG | + | chr3.1:20350188-20350207 | MS.gene79060:intron | 65.0% | |
GGCTCCCACCAGGTGGAATC+TGG | - | chr3.1:20350196-20350215 | None:intergenic | 65.0% | |
TGGTGGGAGCCTCGTCCATC+CGG | + | chr3.1:20350218-20350237 | MS.gene79060:intron | 65.0% | |
TTCCACCTGGTGGGAGCCTC+TGG | + | chr3.1:20350198-20350217 | MS.gene79060:intron | 65.0% | |
!! | AAAGGGGCACCGGATGGACG+AGG | - | chr3.1:20350230-20350249 | None:intergenic | 65.0% |
CACCAGAGGCTCCCACCAGG+TGG | - | chr3.1:20350203-20350222 | None:intergenic | 70.0% | |
CACCTGGTGGGAGCCTCTGG+TGG | + | chr3.1:20350201-20350220 | MS.gene79060:intron | 70.0% | |
TCCCACCAGAGGCTCCCACC+AGG | - | chr3.1:20350206-20350225 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 20349453 | 20352911 | 20349453 | ID=MS.gene79060 |
chr3.1 | mRNA | 20349453 | 20352911 | 20349453 | ID=MS.gene79060.t1;Parent=MS.gene79060 |
chr3.1 | exon | 20349453 | 20349463 | 20349453 | ID=MS.gene79060.t1.exon1;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20349453 | 20349463 | 20349453 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
chr3.1 | exon | 20350468 | 20350555 | 20350468 | ID=MS.gene79060.t1.exon2;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20350468 | 20350555 | 20350468 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
chr3.1 | exon | 20350659 | 20351437 | 20350659 | ID=MS.gene79060.t1.exon3;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20350659 | 20351437 | 20350659 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
chr3.1 | exon | 20352035 | 20352104 | 20352035 | ID=MS.gene79060.t1.exon4;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20352035 | 20352104 | 20352035 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
chr3.1 | exon | 20352695 | 20352783 | 20352695 | ID=MS.gene79060.t1.exon5;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20352695 | 20352783 | 20352695 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
chr3.1 | exon | 20352875 | 20352911 | 20352875 | ID=MS.gene79060.t1.exon6;Parent=MS.gene79060.t1 |
chr3.1 | CDS | 20352875 | 20352911 | 20352875 | ID=cds.MS.gene79060.t1;Parent=MS.gene79060.t1 |
Gene Sequence |
Protein sequence |