AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79208

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79208.t1 MTR_2g093960 35.632 174 96 5 104 268 37 203 3.87e-27 110
MS.gene79208.t1 MTR_8g017210 35.897 156 92 3 104 259 67 214 1.06e-26 110
MS.gene79208.t1 MTR_4g059870 35.897 156 93 4 104 259 43 191 3.91e-26 108
MS.gene79208.t1 MTR_2g099990 35.256 156 93 3 104 259 51 198 4.29e-25 105
MS.gene79208.t1 MTR_1g112270 34.228 149 90 3 111 259 56 196 1.21e-24 104
MS.gene79208.t1 MTR_1g112270 34.228 149 90 3 111 259 67 207 1.30e-24 104
MS.gene79208.t1 MTR_1g094115 34.899 149 89 3 111 259 59 199 2.49e-24 103
MS.gene79208.t1 MTR_1g016010 35.099 151 91 3 109 259 51 194 3.06e-23 99.8
MS.gene79208.t1 MTR_2g090745 35.570 149 88 4 111 259 19 159 2.85e-22 97.1
MS.gene79208.t1 MTR_2g099990 36.496 137 79 3 123 259 1 129 2.97e-22 96.7
MS.gene79208.t1 MTR_1g094115 35.878 131 76 3 129 259 60 182 6.90e-21 93.6
MS.gene79208.t1 MTR_1g093095 35.220 159 86 6 130 278 117 268 3.89e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79208.t1 AT1G34370 59.394 165 61 2 113 271 19 183 3.31e-70 220
MS.gene79208.t1 AT1G34370 59.394 165 61 2 113 271 229 393 3.96e-69 224
MS.gene79208.t1 AT1G34370 59.394 165 61 2 113 271 229 393 3.96e-69 224
MS.gene79208.t1 AT5G22890 58.125 160 61 1 113 266 202 361 2.84e-66 213
MS.gene79208.t1 AT5G66730 37.821 156 89 3 104 259 37 184 1.89e-27 112
MS.gene79208.t1 AT5G44160 35.897 156 92 4 104 259 42 189 4.68e-27 110
MS.gene79208.t1 AT5G44160 36.424 151 88 4 109 259 8 150 8.31e-27 109
MS.gene79208.t1 AT1G03840 37.086 151 87 4 109 259 51 193 1.30e-26 110
MS.gene79208.t1 AT3G45260 35.256 156 94 3 104 259 44 192 4.52e-26 107
MS.gene79208.t1 AT3G45260 35.256 156 94 3 104 259 44 192 4.52e-26 107
MS.gene79208.t1 AT1G03840 36.913 149 86 4 111 259 51 191 5.20e-26 108
MS.gene79208.t1 AT5G03150 35.065 154 93 4 106 259 60 206 5.43e-26 108
MS.gene79208.t1 AT5G60470 35.294 153 92 3 104 256 49 194 5.73e-26 107
MS.gene79208.t1 AT5G60470 35.294 153 92 3 104 256 45 190 6.00e-26 107
MS.gene79208.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene79208.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene79208.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene79208.t1 AT5G60470 35.616 146 87 3 111 256 47 185 4.13e-25 105
MS.gene79208.t1 AT3G50700 35.897 156 92 3 104 259 39 186 1.33e-24 103
MS.gene79208.t1 AT3G13810 34.503 171 98 4 109 279 61 217 1.83e-24 103
MS.gene79208.t1 AT3G13810 34.503 171 98 4 109 279 75 231 2.02e-24 103
MS.gene79208.t1 AT3G13810 34.503 171 98 4 109 279 80 236 2.09e-24 103
MS.gene79208.t1 AT3G13810 34.503 171 98 4 109 279 80 236 2.09e-24 103
MS.gene79208.t1 AT2G02070 34.591 159 94 5 101 259 56 204 2.43e-24 103
MS.gene79208.t1 AT2G02070 34.591 159 94 5 101 259 56 204 2.43e-24 103
MS.gene79208.t1 AT1G14580 33.775 151 92 4 109 259 63 205 5.57e-24 102
MS.gene79208.t1 AT1G14580 33.775 151 92 4 109 259 63 205 5.57e-24 102
MS.gene79208.t1 AT4G02670 36.424 151 89 3 109 259 65 208 6.78e-24 101
MS.gene79208.t1 AT4G02670 36.424 151 89 3 109 259 63 206 6.84e-24 101
MS.gene79208.t1 AT1G14580 33.775 151 92 4 109 259 77 219 7.72e-24 102
MS.gene79208.t1 AT3G13810 34.320 169 97 4 111 279 83 237 1.18e-23 101
MS.gene79208.t1 AT3G13810 34.320 169 97 4 111 279 69 223 1.23e-23 101
MS.gene79208.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.70e-23 101
MS.gene79208.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.70e-23 101
MS.gene79208.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.70e-23 101
MS.gene79208.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.70e-23 101
MS.gene79208.t1 AT1G51220 36.747 166 89 8 130 291 180 333 1.43e-22 96.7
MS.gene79208.t1 AT3G20880 35.220 159 95 6 130 284 258 412 2.20e-22 97.1
MS.gene79208.t1 AT1G25250 36.913 149 87 4 109 256 43 185 1.19e-21 94.7
MS.gene79208.t1 AT1G25250 36.913 149 87 4 109 256 20 162 1.26e-21 94.4
MS.gene79208.t1 AT1G34790 37.725 167 94 8 121 281 137 299 1.65e-21 93.2
MS.gene79208.t1 AT2G01940 36.842 152 82 6 109 256 54 195 5.89e-21 93.2
MS.gene79208.t1 AT1G08290 34.375 160 94 6 130 282 182 337 1.32e-20 91.3
MS.gene79208.t1 AT1G68130 37.500 152 81 6 109 256 51 192 1.59e-20 92.0
MS.gene79208.t1 AT2G02080 32.847 137 84 3 123 259 1 129 4.36e-20 90.9
MS.gene79208.t1 AT2G02080 32.847 137 84 3 123 259 1 129 4.36e-20 90.9
MS.gene79208.t1 AT3G57670 31.658 199 118 7 109 293 189 383 2.44e-19 88.2
MS.gene79208.t1 AT1G13290 33.333 174 107 6 95 263 69 238 8.26e-19 85.5
MS.gene79208.t1 AT2G01940 37.143 140 74 6 109 244 54 183 2.58e-18 85.5

Find 95 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGCTTTGATGAAATTT+TGG 0.092891 3.1:-70130452 MS.gene79208:CDS
GAAGAGTTCTTTCATGATTT+TGG 0.097161 3.1:-70130487 MS.gene79208:CDS
TGGGTAGTGTGATGGGAATC+TGG 0.233101 3.1:+70131372 None:intergenic
GGACGACGACGCACGGTTAA+AGG 0.268870 3.1:+70130901 None:intergenic
TTTGCTGTGGATGAAGTATC+TGG 0.296757 3.1:+70131352 None:intergenic
GAAGAATTATTCGATGCTTT+CGG 0.349953 3.1:-70130734 MS.gene79208:CDS
TCGAGTAAAGATGATGAAAT+TGG 0.358576 3.1:-70130517 MS.gene79208:CDS
TCTAGGAAGGATAAGTTGTT+TGG 0.372634 3.1:-70130646 MS.gene79208:CDS
GAGGGCGGCGGCGTTGACTA+TGG 0.385405 3.1:+70131158 None:intergenic
GGTGGAGGACGGCAAAGATT+TGG 0.403975 3.1:+70131184 None:intergenic
AACGCCGCCGCCCTCGTTCA+CGG 0.407246 3.1:-70131150 MS.gene79208:CDS
TGTTGGAAGATGAGGAGAAA+GGG 0.407870 3.1:-70130585 MS.gene79208:CDS
GGACATGTTGCTTTGTTTGA+GGG 0.416752 3.1:-70130625 MS.gene79208:CDS
CGAAGCGGAACTTGAGGGTC+GGG 0.417024 3.1:+70131315 None:intergenic
AAAGGCTTCGCTAAAGCTTC+CGG 0.425013 3.1:+70130919 None:intergenic
CGGTTCTCGTGTCCGTTTGA+AGG 0.428660 3.1:-70130874 MS.gene79208:CDS
GGAATCTTCCACGGCGGTGA+GGG 0.432442 3.1:+70131080 None:intergenic
GAGCGTTGGTGGTGATGGAT+TGG 0.440346 3.1:+70131241 None:intergenic
TGCCGCATATCTCGCAGAAA+TGG 0.442862 3.1:+70131007 None:intergenic
GAATGAAGATCCTATGGAAA+TGG 0.446675 3.1:-70130542 MS.gene79208:CDS
TGGACATGTTGCTTTGTTTG+AGG 0.450086 3.1:-70130626 MS.gene79208:CDS
GAAATTCAAAGCATTGAAAT+CGG 0.454219 3.1:-70130827 MS.gene79208:CDS
TCCGCTTCGGAATCTATCCT+TGG 0.455820 3.1:-70131301 MS.gene79208:CDS
TCAAGCGCGACGCGAATCTC+CGG 0.460817 3.1:-70130978 MS.gene79208:CDS
CGGATTTGAAGAGTCATATG+AGG 0.460927 3.1:-70130714 MS.gene79208:CDS
GATTCCGAAGCGGAACTTGA+GGG 0.464978 3.1:+70131310 None:intergenic
AGCGTTGGTGGTGATGGATT+GGG 0.484580 3.1:+70131242 None:intergenic
GAATCTTCCACGGCGGTGAG+GGG 0.490348 3.1:+70131081 None:intergenic
GGGTAGTGTGATGGGAATCT+GGG 0.490735 3.1:+70131373 None:intergenic
AAGTATCTGGGTAGTGTGAT+GGG 0.491876 3.1:+70131365 None:intergenic
GAGCTCCACAATTTCGCAAT+CGG 0.498272 3.1:+70131059 None:intergenic
CTAAGTGGAAGTGTTCTTGT+GGG 0.500097 3.1:-70130678 MS.gene79208:CDS
GACAGGAGCGTTGGTGGTGA+TGG 0.501841 3.1:+70131236 None:intergenic
CGTGTGCTCTCATGTGCATC+CGG 0.503672 3.1:+70130959 None:intergenic
TTACTCGATGCCATTTCCAT+AGG 0.504832 3.1:+70130532 None:intergenic
GTGTGATGGGAATCTGGGTT+CGG 0.507152 3.1:+70131378 None:intergenic
TGGATTGGGACAGGAAGGTT+CGG 0.516488 3.1:+70131256 None:intergenic
TGGTGGTGATGGATTGGGAC+AGG 0.519067 3.1:+70131247 None:intergenic
AATCTTCCACGGCGGTGAGG+GGG 0.520341 3.1:+70131082 None:intergenic
TTTCTGTTACATCCTTCAAA+CGG 0.521111 3.1:+70130862 None:intergenic
AGATTCCGATTGCGAAATTG+TGG 0.528555 3.1:-70131064 MS.gene79208:CDS
TGAGGAGAATGAAGATCCTA+TGG 0.533388 3.1:-70130548 MS.gene79208:CDS
TAAAGATGATGAAATTGGTA+TGG 0.536892 3.1:-70130512 MS.gene79208:CDS
AGATTACACGAATACATCTT+CGG 0.537959 3.1:+70130766 None:intergenic
GGCACCGTGAACGAGGGCGG+CGG 0.540085 3.1:+70131146 None:intergenic
TTCTGCGAGATATGCGGCAA+AGG 0.541688 3.1:-70131003 MS.gene79208:CDS
GTTAATTGATCATTGCTGAC+AGG 0.542229 3.1:+70131219 None:intergenic
CCGACCCTCAAGTTCCGCTT+CGG 0.543888 3.1:-70131314 MS.gene79208:CDS
GAGGACGGCAAAGATTTGGT+TGG 0.549075 3.1:+70131188 None:intergenic
GTGTGAAGACTCATTTCAAG+AGG 0.550074 3.1:-70130798 MS.gene79208:CDS
GAAGCGGAACTTGAGGGTCG+GGG 0.550186 3.1:+70131316 None:intergenic
ATTGCTGACAGGAGCGTTGG+TGG 0.551289 3.1:+70131230 None:intergenic
CGGAATCTTCCACGGCGGTG+AGG 0.555882 3.1:+70131079 None:intergenic
AGATTCCGAAGCGGAACTTG+AGG 0.557075 3.1:+70131309 None:intergenic
GGCAAAGATTTGGTTGGAGA+CGG 0.557743 3.1:+70131194 None:intergenic
TCATCTTCCAACATAACAGC+AGG 0.563199 3.1:+70130595 None:intergenic
AGGGAAGCAAGTTGTTGCTG+AGG 0.563220 3.1:-70130566 MS.gene79208:CDS
AAGCGGAACTTGAGGGTCGG+GGG 0.565688 3.1:+70131317 None:intergenic
GAAGTATCTGGGTAGTGTGA+TGG 0.565886 3.1:+70131364 None:intergenic
AAAGGTGATGGAGGAGAAGA+CGG 0.568206 3.1:+70131122 None:intergenic
AATTGTGGAGCTCGACGCCA+TGG 0.568707 3.1:-70131049 MS.gene79208:CDS
ATCATTGCTGACAGGAGCGT+TGG 0.573157 3.1:+70131227 None:intergenic
ATGTTGGAAGATGAGGAGAA+AGG 0.574571 3.1:-70130586 MS.gene79208:CDS
TGCTGTTATGTTGGAAGATG+AGG 0.574860 3.1:-70130593 MS.gene79208:CDS
TCATATGCCTGCTGTTATGT+TGG 0.575110 3.1:-70130602 MS.gene79208:CDS
AGACGGAGGCACCGTGAACG+AGG 0.577760 3.1:+70131139 None:intergenic
CGGATGCACATGAGAGCACA+CGG 0.577893 3.1:-70130958 MS.gene79208:CDS
AACGGACACGAGAACCGTGT+TGG 0.584128 3.1:+70130880 None:intergenic
TTCGCAATCGGAATCTTCCA+CGG 0.585611 3.1:+70131071 None:intergenic
CGGCGGCGTTGACTATGGTA+TGG 0.588110 3.1:+70131163 None:intergenic
GGCAATGTGGTGAGTCTAAG+TGG 0.591829 3.1:-70130693 MS.gene79208:CDS
GTTGTTGTTGACTGAATCAA+AGG 0.592805 3.1:+70131104 None:intergenic
GGTGATGGATTGGGACAGGA+AGG 0.593615 3.1:+70131251 None:intergenic
ATGTTCAGCTAGCAATTCCA+TGG 0.594022 3.1:+70131032 None:intergenic
TTGCTGTGGATGAAGTATCT+GGG 0.597399 3.1:+70131353 None:intergenic
CCGAAGCGGAACTTGAGGGT+CGG 0.601485 3.1:+70131314 None:intergenic
CCGTGCGTCGTCGTCCAACA+CGG 0.603358 3.1:-70130894 MS.gene79208:CDS
GACTATGGTATGGTGGAGGA+CGG 0.605416 3.1:+70131173 None:intergenic
CCGTGTTGGACGACGACGCA+CGG 0.605601 3.1:+70130894 None:intergenic
GACGGAGGCACCGTGAACGA+GGG 0.609341 3.1:+70131140 None:intergenic
GGAGGCACCGTGAACGAGGG+CGG 0.610583 3.1:+70131143 None:intergenic
TCTAAGTGGAAGTGTTCTTG+TGG 0.613240 3.1:-70130679 MS.gene79208:CDS
CTCCATTTCTGCGAGATATG+CGG 0.627013 3.1:-70131009 MS.gene79208:CDS
AAAGATTTGGTTGGAGACGG+CGG 0.627067 3.1:+70131197 None:intergenic
GTTGACTGAATCAAAGGTGA+TGG 0.628225 3.1:+70131110 None:intergenic
CGGCGTTGACTATGGTATGG+TGG 0.628323 3.1:+70131166 None:intergenic
CGTTGACTATGGTATGGTGG+AGG 0.634509 3.1:+70131169 None:intergenic
GACTGAATCAAAGGTGATGG+AGG 0.635823 3.1:+70131113 None:intergenic
ATCGATGCTTGTCTGAACCA+AGG 0.654173 3.1:+70131284 None:intergenic
CGGGAATCAGTTCAAGACGC+CGG 0.682583 3.1:-70130938 MS.gene79208:CDS
GGATGCACATGAGAGCACAC+GGG 0.701290 3.1:-70130957 MS.gene79208:CDS
ACCAAGGATAGATTCCGAAG+CGG 0.716599 3.1:+70131300 None:intergenic
GCAATCGGAATCTTCCACGG+CGG 0.729614 3.1:+70131074 None:intergenic
GGTGATGGAGGAGAAGACGG+AGG 0.738851 3.1:+70131125 None:intergenic
AAGAGTCATATGAGGCAATG+TGG 0.740474 3.1:-70130706 MS.gene79208:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGCTTTGATGAAATTTT+GGG - chr3.1:70131371-70131390 MS.gene79208:CDS 20.0%
! TAAAGATGATGAAATTGGTA+TGG - chr3.1:70131310-70131329 MS.gene79208:CDS 25.0%
!! AAGAGTTCTTTCATGATTTT+GGG - chr3.1:70131336-70131355 MS.gene79208:CDS 25.0%
!! CTATTGCTTTGATGAAATTT+TGG - chr3.1:70131370-70131389 MS.gene79208:CDS 25.0%
!!! GAAATTCAAAGCATTGAAAT+CGG - chr3.1:70130995-70131014 MS.gene79208:CDS 25.0%
AGATTACACGAATACATCTT+CGG + chr3.1:70131059-70131078 None:intergenic 30.0%
GAAGAATTATTCGATGCTTT+CGG - chr3.1:70131088-70131107 MS.gene79208:CDS 30.0%
TCGAGTAAAGATGATGAAAT+TGG - chr3.1:70131305-70131324 MS.gene79208:CDS 30.0%
TTTCTGTTACATCCTTCAAA+CGG + chr3.1:70130963-70130982 None:intergenic 30.0%
! GAAGAGTTCTTTCATGATTT+TGG - chr3.1:70131335-70131354 MS.gene79208:CDS 30.0%
GAATGAAGATCCTATGGAAA+TGG - chr3.1:70131280-70131299 MS.gene79208:CDS 35.0%
GTTAATTGATCATTGCTGAC+AGG + chr3.1:70130606-70130625 None:intergenic 35.0%
TCTAGGAAGGATAAGTTGTT+TGG - chr3.1:70131176-70131195 MS.gene79208:CDS 35.0%
! GTATTAGTTGGATTTTGCTG+TGG + chr3.1:70130486-70130505 None:intergenic 35.0%
! GTTGTTGTTGACTGAATCAA+AGG + chr3.1:70130721-70130740 None:intergenic 35.0%
AAGAGTCATATGAGGCAATG+TGG - chr3.1:70131116-70131135 MS.gene79208:CDS 40.0%
AAGTATCTGGGTAGTGTGAT+GGG + chr3.1:70130460-70130479 None:intergenic 40.0%
AGATTCCGATTGCGAAATTG+TGG - chr3.1:70130758-70130777 MS.gene79208:CDS 40.0%
ATGTTCAGCTAGCAATTCCA+TGG + chr3.1:70130793-70130812 None:intergenic 40.0%
ATGTTGGAAGATGAGGAGAA+AGG - chr3.1:70131236-70131255 MS.gene79208:CDS 40.0%
CGGATTTGAAGAGTCATATG+AGG - chr3.1:70131108-70131127 MS.gene79208:CDS 40.0%
GTGTGAAGACTCATTTCAAG+AGG - chr3.1:70131024-70131043 MS.gene79208:CDS 40.0%
GTTGACTGAATCAAAGGTGA+TGG + chr3.1:70130715-70130734 None:intergenic 40.0%
TCATATGCCTGCTGTTATGT+TGG - chr3.1:70131220-70131239 MS.gene79208:CDS 40.0%
TCATCTTCCAACATAACAGC+AGG + chr3.1:70131230-70131249 None:intergenic 40.0%
TGAGGAGAATGAAGATCCTA+TGG - chr3.1:70131274-70131293 MS.gene79208:CDS 40.0%
TGCTGTTATGTTGGAAGATG+AGG - chr3.1:70131229-70131248 MS.gene79208:CDS 40.0%
TGTTGGAAGATGAGGAGAAA+GGG - chr3.1:70131237-70131256 MS.gene79208:CDS 40.0%
! TTACTCGATGCCATTTCCAT+AGG + chr3.1:70131293-70131312 None:intergenic 40.0%
! TTGCTGTGGATGAAGTATCT+GGG + chr3.1:70130472-70130491 None:intergenic 40.0%
! TTTGCTGTGGATGAAGTATC+TGG + chr3.1:70130473-70130492 None:intergenic 40.0%
!! CTAAGTGGAAGTGTTCTTGT+GGG - chr3.1:70131144-70131163 MS.gene79208:CDS 40.0%
!! GGACATGTTGCTTTGTTTGA+GGG - chr3.1:70131197-70131216 MS.gene79208:CDS 40.0%
!! TCTAAGTGGAAGTGTTCTTG+TGG - chr3.1:70131143-70131162 MS.gene79208:CDS 40.0%
!! TGGACATGTTGCTTTGTTTG+AGG - chr3.1:70131196-70131215 MS.gene79208:CDS 40.0%
!!! CTTGTGGGAGTACTTTTTCT+AGG - chr3.1:70131159-70131178 MS.gene79208:CDS 40.0%
!!! TGGGAGTACTTTTTCTAGGA+AGG - chr3.1:70131163-70131182 MS.gene79208:CDS 40.0%
AAAGGCTTCGCTAAAGCTTC+CGG + chr3.1:70130906-70130925 None:intergenic 45.0%
ACCAAGGATAGATTCCGAAG+CGG + chr3.1:70130525-70130544 None:intergenic 45.0%
ATCGATGCTTGTCTGAACCA+AGG + chr3.1:70130541-70130560 None:intergenic 45.0%
CTCCATTTCTGCGAGATATG+CGG - chr3.1:70130813-70130832 MS.gene79208:CDS 45.0%
GAGCTCCACAATTTCGCAAT+CGG + chr3.1:70130766-70130785 None:intergenic 45.0%
TTCGCAATCGGAATCTTCCA+CGG + chr3.1:70130754-70130773 None:intergenic 45.0%
! AAAGATTTGGTTGGAGACGG+CGG + chr3.1:70130628-70130647 None:intergenic 45.0%
! GAAGTATCTGGGTAGTGTGA+TGG + chr3.1:70130461-70130480 None:intergenic 45.0%
! GACTGAATCAAAGGTGATGG+AGG + chr3.1:70130712-70130731 None:intergenic 45.0%
! GGCAAAGATTTGGTTGGAGA+CGG + chr3.1:70130631-70130650 None:intergenic 45.0%
!! AAAGGTGATGGAGGAGAAGA+CGG + chr3.1:70130703-70130722 None:intergenic 45.0%
AGATTCCGAAGCGGAACTTG+AGG + chr3.1:70130516-70130535 None:intergenic 50.0%
AGGGAAGCAAGTTGTTGCTG+AGG - chr3.1:70131256-70131275 MS.gene79208:CDS 50.0%
GATTCCGAAGCGGAACTTGA+GGG + chr3.1:70130515-70130534 None:intergenic 50.0%
GGCAATGTGGTGAGTCTAAG+TGG - chr3.1:70131129-70131148 MS.gene79208:CDS 50.0%
TCCGCTTCGGAATCTATCCT+TGG - chr3.1:70130521-70130540 MS.gene79208:CDS 50.0%
TGCCGCATATCTCGCAGAAA+TGG + chr3.1:70130818-70130837 None:intergenic 50.0%
TTCTGCGAGATATGCGGCAA+AGG - chr3.1:70130819-70130838 MS.gene79208:CDS 50.0%
! ATCATTGCTGACAGGAGCGT+TGG + chr3.1:70130598-70130617 None:intergenic 50.0%
! CGTTGACTATGGTATGGTGG+AGG + chr3.1:70130656-70130675 None:intergenic 50.0%
! GACTATGGTATGGTGGAGGA+CGG + chr3.1:70130652-70130671 None:intergenic 50.0%
! GAGGACGGCAAAGATTTGGT+TGG + chr3.1:70130637-70130656 None:intergenic 50.0%
! GGGTAGTGTGATGGGAATCT+GGG + chr3.1:70130452-70130471 None:intergenic 50.0%
! GTGTGATGGGAATCTGGGTT+CGG + chr3.1:70130447-70130466 None:intergenic 50.0%
! TGGATTGGGACAGGAAGGTT+CGG + chr3.1:70130569-70130588 None:intergenic 50.0%
! TGGGTAGTGTGATGGGAATC+TGG + chr3.1:70130453-70130472 None:intergenic 50.0%
!! AGCGTTGGTGGTGATGGATT+GGG + chr3.1:70130583-70130602 None:intergenic 50.0%
AACGGACACGAGAACCGTGT+TGG + chr3.1:70130945-70130964 None:intergenic 55.0%
AATTGTGGAGCTCGACGCCA+TGG - chr3.1:70130773-70130792 MS.gene79208:CDS 55.0%
CGGGAATCAGTTCAAGACGC+CGG - chr3.1:70130884-70130903 MS.gene79208:CDS 55.0%
CGGTTCTCGTGTCCGTTTGA+AGG - chr3.1:70130948-70130967 MS.gene79208:CDS 55.0%
CGTGTGCTCTCATGTGCATC+CGG + chr3.1:70130866-70130885 None:intergenic 55.0%
GCAATCGGAATCTTCCACGG+CGG + chr3.1:70130751-70130770 None:intergenic 55.0%
GGTGGAGGACGGCAAAGATT+TGG + chr3.1:70130641-70130660 None:intergenic 55.0%
! CGGATGCACATGAGAGCACA+CGG - chr3.1:70130864-70130883 MS.gene79208:CDS 55.0%
! GGATGCACATGAGAGCACAC+GGG - chr3.1:70130865-70130884 MS.gene79208:CDS 55.0%
!! ATTGCTGACAGGAGCGTTGG+TGG + chr3.1:70130595-70130614 None:intergenic 55.0%
!! CGGCGTTGACTATGGTATGG+TGG + chr3.1:70130659-70130678 None:intergenic 55.0%
!! GAGCGTTGGTGGTGATGGAT+TGG + chr3.1:70130584-70130603 None:intergenic 55.0%
!! GGTGATGGATTGGGACAGGA+AGG + chr3.1:70130574-70130593 None:intergenic 55.0%
!! TGAGGGTCGGGGGTATTAGT+TGG + chr3.1:70130498-70130517 None:intergenic 55.0%
!! TGGTGGTGATGGATTGGGAC+AGG + chr3.1:70130578-70130597 None:intergenic 55.0%
AAGCGGAACTTGAGGGTCGG+GGG + chr3.1:70130508-70130527 None:intergenic 60.0%
AATCTTCCACGGCGGTGAGG+GGG + chr3.1:70130743-70130762 None:intergenic 60.0%
CCGAAGCGGAACTTGAGGGT+CGG + chr3.1:70130511-70130530 None:intergenic 60.0%
CCGACCCTCAAGTTCCGCTT+CGG - chr3.1:70130508-70130527 MS.gene79208:CDS 60.0%
CGAAGCGGAACTTGAGGGTC+GGG + chr3.1:70130510-70130529 None:intergenic 60.0%
GAAGCGGAACTTGAGGGTCG+GGG + chr3.1:70130509-70130528 None:intergenic 60.0%
GAATCTTCCACGGCGGTGAG+GGG + chr3.1:70130744-70130763 None:intergenic 60.0%
GGAATCTTCCACGGCGGTGA+GGG + chr3.1:70130745-70130764 None:intergenic 60.0%
GGACGACGACGCACGGTTAA+AGG + chr3.1:70130924-70130943 None:intergenic 60.0%
TCAAGCGCGACGCGAATCTC+CGG - chr3.1:70130844-70130863 MS.gene79208:CDS 60.0%
!! CGGCGGCGTTGACTATGGTA+TGG + chr3.1:70130662-70130681 None:intergenic 60.0%
!! GACAGGAGCGTTGGTGGTGA+TGG + chr3.1:70130589-70130608 None:intergenic 60.0%
!! GGTGATGGAGGAGAAGACGG+AGG + chr3.1:70130700-70130719 None:intergenic 60.0%
CCGTGCGTCGTCGTCCAACA+CGG - chr3.1:70130928-70130947 MS.gene79208:CDS 65.0%
CCGTGTTGGACGACGACGCA+CGG + chr3.1:70130931-70130950 None:intergenic 65.0%
CGGAATCTTCCACGGCGGTG+AGG + chr3.1:70130746-70130765 None:intergenic 65.0%
!! AGACGGAGGCACCGTGAACG+AGG + chr3.1:70130686-70130705 None:intergenic 65.0%
!! GACGGAGGCACCGTGAACGA+GGG + chr3.1:70130685-70130704 None:intergenic 65.0%
AACGCCGCCGCCCTCGTTCA+CGG - chr3.1:70130672-70130691 MS.gene79208:CDS 70.0%
CAACAACCCCCTCACCGCCG+TGG - chr3.1:70130734-70130753 MS.gene79208:CDS 70.0%
!! GAGGGCGGCGGCGTTGACTA+TGG + chr3.1:70130667-70130686 None:intergenic 70.0%
!! GGAGGCACCGTGAACGAGGG+CGG + chr3.1:70130682-70130701 None:intergenic 70.0%
GGCACCGTGAACGAGGGCGG+CGG + chr3.1:70130679-70130698 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 70130435 70131409 70130435 ID=MS.gene79208
chr3.1 mRNA 70130435 70131409 70130435 ID=MS.gene79208.t1;Parent=MS.gene79208
chr3.1 exon 70130435 70131409 70130435 ID=MS.gene79208.t1.exon1;Parent=MS.gene79208.t1
chr3.1 CDS 70130435 70131409 70130435 ID=cds.MS.gene79208.t1;Parent=MS.gene79208.t1
Gene Sequence

>MS.gene79208

ATGTCTAATCCGAACCCAGATTCCCATCACACTACCCAGATACTTCATCCACAGCAAAATCCAACTAATACCCCCGACCCTCAAGTTCCGCTTCGGAATCTATCCTTGGTTCAGACAAGCATCGATTCTCTCCGAACCTTCCTGTCCCAATCCATCACCACCAACGCTCCTGTCAGCAATGATCAATTAACCGCCGTCTCCAACCAAATCTTTGCCGTCCTCCACCATACCATAGTCAACGCCGCCGCCCTCGTTCACGGTGCCTCCGTCTTCTCCTCCATCACCTTTGATTCAGTCAACAACAACCCCCTCACCGCCGTGGAAGATTCCGATTGCGAAATTGTGGAGCTCGACGCCATGGAATTGCTAGCTGAACATCTCCATTTCTGCGAGATATGCGGCAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGAGAGCACACGGGAATCAGTTCAAGACGCCGGAAGCTTTAGCGAAGCCTTTAACCGTGCGTCGTCGTCCAACACGGTTCTCGTGTCCGTTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAAGCATTGAAATCGGTGATTTGTGTGAAGACTCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTAATCTTTGTCGTAAGAAGAATTATTCGATGCTTTCGGATTTGAAGAGTCATATGAGGCAATGTGGTGAGTCTAAGTGGAAGTGTTCTTGTGGGAGTACTTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTATGTTGGAAGATGAGGAGAAAGGGAAGCAAGTTGTTGCTGAGGAGAATGAAGATCCTATGGAAATGGCATCGAGTAAAGATGATGAAATTGGTATGGATGAAGAGTTCTTTCATGATTTTGGGTCTATTGATAACTATTGCTTTGATGAAATTTTGGGATTTCGTCGTAGCTAG
Protein sequence

>MS.gene79208.t1

MSNPNPDSHHTTQILHPQQNPTNTPDPQVPLRNLSLVQTSIDSLRTFLSQSITTNAPVSNDQLTAVSNQIFAVLHHTIVNAAALVHGASVFSSITFDSVNNNPLTAVEDSDCEIVELDAMELLAEHLHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLTVRRRPTRFSCPFEGCNRNKKHKKFKALKSVICVKTHFKRSHCPKMYSCNLCRKKNYSMLSDLKSHMRQCGESKWKCSCGSTFSRKDKLFGHVALFEGHMPAVMLEDEEKGKQVVAEENEDPMEMASSKDDEIGMDEEFFHDFGSIDNYCFDEILGFRRS