Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79231.t1 | XP_003601983.1 | 94.6 | 429 | 22 | 1 | 1 | 429 | 1 | 428 | 2.80E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79231.t1 | Q9SLH0 | 61.6 | 279 | 93 | 5 | 10 | 280 | 28 | 300 | 3.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79231.t1 | G7J4B1 | 94.6 | 429 | 22 | 1 | 1 | 429 | 1 | 428 | 2.0e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79231.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79231.t1 | MTR_3g087530 | 95.105 | 429 | 20 | 1 | 1 | 429 | 1 | 428 | 0.0 | 785 |
| MS.gene79231.t1 | MTR_8g091370 | 52.477 | 444 | 172 | 7 | 15 | 423 | 5 | 444 | 2.61e-147 | 426 |
| MS.gene79231.t1 | MTR_5g087790 | 56.869 | 313 | 111 | 7 | 22 | 326 | 39 | 335 | 1.97e-113 | 345 |
| MS.gene79231.t1 | MTR_3g078770 | 57.718 | 298 | 102 | 6 | 2 | 280 | 9 | 301 | 1.17e-110 | 339 |
| MS.gene79231.t1 | MTR_2g098470 | 51.887 | 318 | 131 | 7 | 4 | 305 | 11 | 322 | 4.15e-101 | 314 |
| MS.gene79231.t1 | MTR_6g460640 | 48.175 | 274 | 121 | 6 | 16 | 280 | 26 | 287 | 9.63e-86 | 275 |
| MS.gene79231.t1 | MTR_6g060600 | 39.454 | 403 | 199 | 10 | 16 | 403 | 26 | 398 | 3.70e-84 | 271 |
| MS.gene79231.t1 | MTR_3g010790 | 50.495 | 202 | 90 | 3 | 83 | 280 | 1 | 196 | 2.31e-69 | 228 |
| MS.gene79231.t1 | MTR_1g024420 | 46.078 | 102 | 50 | 2 | 29 | 125 | 7 | 108 | 4.11e-24 | 97.1 |
| MS.gene79231.t1 | MTR_7g095580 | 41.250 | 80 | 43 | 1 | 72 | 151 | 1 | 76 | 9.12e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79231.t1 | AT5G65100 | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 6.41e-120 | 360 |
| MS.gene79231.t1 | AT5G10120 | 53.939 | 330 | 140 | 5 | 25 | 349 | 16 | 338 | 1.49e-118 | 354 |
| MS.gene79231.t1 | AT2G27050 | 63.100 | 271 | 86 | 5 | 18 | 280 | 36 | 300 | 7.28e-115 | 348 |
| MS.gene79231.t1 | AT3G20770 | 55.625 | 320 | 113 | 9 | 13 | 322 | 31 | 331 | 6.22e-110 | 337 |
| MS.gene79231.t1 | AT1G73730 | 48.910 | 321 | 142 | 6 | 9 | 323 | 4 | 308 | 2.77e-99 | 307 |
| MS.gene79231.t1 | AT1G73730 | 48.910 | 321 | 142 | 6 | 9 | 323 | 16 | 320 | 3.41e-99 | 307 |
| MS.gene79231.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.54e-78 | 252 |
| MS.gene79231.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.54e-78 | 252 |
| MS.gene79231.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 59 | 311 | 2.71e-78 | 252 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACAATAGACAATTTA+TGG | 0.077687 | 3.1:-70411445 | None:intergenic |
| GAGATTGAAGGTGGGAAATT+TGG | 0.186624 | 3.1:+70411674 | MS.gene79231:CDS |
| TGTTGATGATTGGTTGAAAA+TGG | 0.189311 | 3.1:+70411649 | MS.gene79231:CDS |
| AGAAGATGTATGTAAGAATT+TGG | 0.224002 | 3.1:-70411038 | None:intergenic |
| AAGGTGGTGGGCCTTGTTCT+TGG | 0.225823 | 3.1:-70411217 | None:intergenic |
| AAAACATATGTCACCTGATT+TGG | 0.233366 | 3.1:+70411298 | MS.gene79231:CDS |
| AGGTCATGTGGTTTCTTATA+AGG | 0.240985 | 3.1:-70411236 | None:intergenic |
| CACCTGATTTGGAGAAATTA+AGG | 0.264068 | 3.1:+70411309 | MS.gene79231:CDS |
| GCATCACAATCAAGCAAATT+AGG | 0.277177 | 3.1:-70411614 | None:intergenic |
| TTCCTTAATTTCTCCAAATC+AGG | 0.277968 | 3.1:-70411311 | None:intergenic |
| GGCCCACAGGATTAGAAAAT+TGG | 0.318543 | 3.1:+70411171 | MS.gene79231:CDS |
| GAAACCACATGACCTTAAAA+AGG | 0.331860 | 3.1:+70411244 | MS.gene79231:CDS |
| AGACAATTTATGGCATTTAT+CGG | 0.339024 | 3.1:-70411435 | None:intergenic |
| TAAAATGTTCATCTTCTTGA+AGG | 0.356058 | 3.1:-70410998 | None:intergenic |
| AGGTGGTGGGCCTTGTTCTT+GGG | 0.363001 | 3.1:-70411216 | None:intergenic |
| GGCATGGAAAGTTTCTGTTT+TGG | 0.364875 | 3.1:+70411265 | MS.gene79231:CDS |
| ATCTACCTCTTCAGTTCCTT+CGG | 0.367358 | 3.1:-70410628 | None:intergenic |
| GCGGCAATCGAAATGGTAAA+AGG | 0.387494 | 3.1:+70411746 | MS.gene79231:CDS |
| GAGTTGAATCTTGTAAATCT+TGG | 0.394723 | 3.1:-70411061 | None:intergenic |
| TTTGGAGAAATTAAGGAAGT+TGG | 0.395073 | 3.1:+70411316 | MS.gene79231:CDS |
| GAAAAGGGTAAACCAGTATC+AGG | 0.402465 | 3.1:+70410888 | MS.gene79231:CDS |
| GATTCCATAAACAAAACCTT+TGG | 0.403082 | 3.1:-70410859 | None:intergenic |
| GATTTACAAGATTCAACTCT+TGG | 0.415106 | 3.1:+70411065 | MS.gene79231:CDS |
| TTATGGAATCATCCCTGAAA+AGG | 0.418370 | 3.1:+70410872 | MS.gene79231:CDS |
| AGTGACGATATTGATCCTTA+TGG | 0.425477 | 3.1:+70410597 | MS.gene79231:CDS |
| CCTTCGGCTTCCACGCCATA+AGG | 0.429765 | 3.1:-70410612 | None:intergenic |
| TGTGGTTTCTTATAAGGTGG+TGG | 0.433405 | 3.1:-70411230 | None:intergenic |
| GAATTGAAAATGTTGATGAT+TGG | 0.439281 | 3.1:+70411639 | MS.gene79231:CDS |
| GTTGATGATTGGTTGAAAAT+GGG | 0.440872 | 3.1:+70411650 | MS.gene79231:CDS |
| CTATCAGAAGAACCTGATAC+TGG | 0.447835 | 3.1:-70410900 | None:intergenic |
| CAAATACATGGCAAAGATCA+TGG | 0.447987 | 3.1:+70410824 | MS.gene79231:CDS |
| GTAATAACAGAAGTGAGAAA+AGG | 0.454452 | 3.1:+70411504 | MS.gene79231:CDS |
| ATTCGAAGCGGCAATCGAAA+TGG | 0.459117 | 3.1:+70411739 | MS.gene79231:CDS |
| AATCAAGAAGAAGCTTTGCT+TGG | 0.469320 | 3.1:+70411407 | MS.gene79231:CDS |
| TGTTCATCTTCTTGAAGGAT+AGG | 0.475070 | 3.1:-70410993 | None:intergenic |
| CATTCTATTTAGTCTTGCGC+TGG | 0.480486 | 3.1:-70411860 | None:intergenic |
| CTGCAAGAGATAGTGCTACT+TGG | 0.489905 | 3.1:+70411372 | MS.gene79231:CDS |
| TTGAAGGTGGGAAATTTGGA+TGG | 0.490896 | 3.1:+70411678 | MS.gene79231:CDS |
| TATGGAATCATCCCTGAAAA+GGG | 0.513987 | 3.1:+70410873 | MS.gene79231:CDS |
| GTGGTTTCTTATAAGGTGGT+GGG | 0.519151 | 3.1:-70411229 | None:intergenic |
| GTGGGGTGAACAAGGTCTGT+TGG | 0.522121 | 3.1:+70411193 | MS.gene79231:CDS |
| TCTCCTCCATGGTGGCCCAC+AGG | 0.524329 | 3.1:+70411158 | MS.gene79231:CDS |
| TTGAAAATGGGAGAGATTGA+AGG | 0.525609 | 3.1:+70411662 | MS.gene79231:CDS |
| AGAGGGGAATTTCTCCTCCA+TGG | 0.534345 | 3.1:+70411147 | MS.gene79231:CDS |
| TCCGCAGAGTAAGTTACCTA+TGG | 0.540781 | 3.1:+70411565 | MS.gene79231:CDS |
| GTAGAGGAAGGTGAAAGCTC+TGG | 0.542132 | 3.1:+70411461 | MS.gene79231:CDS |
| GAAAATTGGTGGGGTGAACA+AGG | 0.545195 | 3.1:+70411185 | MS.gene79231:CDS |
| CCACAGGATTAGAAAATTGG+TGG | 0.547684 | 3.1:+70411174 | MS.gene79231:CDS |
| AACAGAAAGTGTGGACTATG+AGG | 0.556253 | 3.1:+70410659 | MS.gene79231:CDS |
| TGAAGGTGGGAAATTTGGAT+GGG | 0.560628 | 3.1:+70411679 | MS.gene79231:CDS |
| GGTCTGTTGGCCCAAGAACA+AGG | 0.567933 | 3.1:+70411206 | MS.gene79231:CDS |
| CTTCTGATAGTTTACGCGAG+TGG | 0.569816 | 3.1:+70410913 | MS.gene79231:CDS |
| CCATAAATTGTCTATTGTAG+AGG | 0.575509 | 3.1:+70411445 | MS.gene79231:CDS |
| CAAAACAAGAAGCATCGAGA+AGG | 0.577217 | 3.1:+70410769 | MS.gene79231:CDS |
| AAAATGGGAGAGATTGAAGG+TGG | 0.578746 | 3.1:+70411665 | MS.gene79231:CDS |
| AGGAGCTGAAGAAACGTATG+TGG | 0.578948 | 3.1:+70410679 | MS.gene79231:CDS |
| TCTAATCCTGTGGGCCACCA+TGG | 0.579340 | 3.1:-70411164 | None:intergenic |
| CTGATAGTTTACGCGAGTGG+TGG | 0.579904 | 3.1:+70410916 | MS.gene79231:CDS |
| TGATCAAAGTGCACCACTCG+CGG | 0.580612 | 3.1:+70410956 | MS.gene79231:CDS |
| CACAGGATTAGAAAATTGGT+GGG | 0.587810 | 3.1:+70411175 | MS.gene79231:CDS |
| GAGGAGGTTTCCACTCGAGA+GGG | 0.588256 | 3.1:+70411130 | MS.gene79231:CDS |
| AAATGGGAGAGATTGAAGGT+GGG | 0.590105 | 3.1:+70411666 | MS.gene79231:CDS |
| GTTGTTAAACTCATAGCCAT+AGG | 0.592800 | 3.1:-70411581 | None:intergenic |
| GTGGTGCACTTTGATCAAAA+CGG | 0.595848 | 3.1:-70410950 | None:intergenic |
| TGAAACTGAAACAGAAAGTG+TGG | 0.596612 | 3.1:+70410650 | MS.gene79231:CDS |
| GGAGAAATTCCCCTCTCGAG+TGG | 0.599812 | 3.1:-70411140 | None:intergenic |
| TCATGTGGTTTCTTATAAGG+TGG | 0.601388 | 3.1:-70411233 | None:intergenic |
| AGTGGAAACCTCCTCTGTGG+TGG | 0.601734 | 3.1:-70411122 | None:intergenic |
| TTGGATGGGATGTTGAACAT+TGG | 0.603559 | 3.1:+70411693 | MS.gene79231:CDS |
| GCATAATCTACATGATCAAG+AGG | 0.603727 | 3.1:+70411802 | MS.gene79231:CDS |
| CCTTATGGCGTGGAAGCCGA+AGG | 0.608551 | 3.1:+70410612 | MS.gene79231:CDS |
| GCTGAAGAAACGTATGTGGA+AGG | 0.612562 | 3.1:+70410683 | MS.gene79231:CDS |
| CGATATTGATCCTTATGGCG+TGG | 0.616407 | 3.1:+70410602 | MS.gene79231:CDS |
| AAGCAAATTAGGAACACGAT+GGG | 0.617311 | 3.1:-70411603 | None:intergenic |
| AAATTGTCTATTGTAGAGGA+AGG | 0.619180 | 3.1:+70411449 | MS.gene79231:CDS |
| AGATTCAGTACTCAAATACA+TGG | 0.630198 | 3.1:+70410812 | MS.gene79231:CDS |
| AGAGGAGGTTTCCACTCGAG+AGG | 0.641374 | 3.1:+70411129 | MS.gene79231:CDS |
| TGAACATTGGCTGAATGATG+TGG | 0.642242 | 3.1:+70411706 | MS.gene79231:CDS |
| ATGGATGTATGCAAAGCCAA+AGG | 0.644473 | 3.1:+70410843 | MS.gene79231:CDS |
| GGTAAAAGGTAATCATAACA+TGG | 0.646961 | 3.1:+70411760 | MS.gene79231:CDS |
| GGAAGCCGAAGGAACTGAAG+AGG | 0.651144 | 3.1:+70410623 | MS.gene79231:CDS |
| CAAGCAAATTAGGAACACGA+TGG | 0.654501 | 3.1:-70411604 | None:intergenic |
| GGGGAATTTCTCCTCCATGG+TGG | 0.664010 | 3.1:+70411150 | MS.gene79231:CDS |
| GAGGAAGGTGAAAGCTCTGG+CGG | 0.666246 | 3.1:+70411464 | MS.gene79231:CDS |
| AGGAGGTTTCCACTCGAGAG+GGG | 0.673102 | 3.1:+70411131 | MS.gene79231:CDS |
| AATCCTGTGGGCCACCATGG+AGG | 0.673179 | 3.1:-70411161 | None:intergenic |
| TCGAGTGGAAACCTCCTCTG+TGG | 0.673267 | 3.1:-70411125 | None:intergenic |
| ACTGTGTGCCACCACAGAGG+AGG | 0.682764 | 3.1:+70411114 | MS.gene79231:CDS |
| ACAGGATTAGAAAATTGGTG+GGG | 0.694629 | 3.1:+70411176 | MS.gene79231:CDS |
| GCCATAGGTAACTTACTCTG+CGG | 0.696224 | 3.1:-70411566 | None:intergenic |
| GGATGATCATGAATTCGAAG+CGG | 0.715431 | 3.1:+70411727 | MS.gene79231:CDS |
| ATCGTCACTGATCACCACCA+TGG | 0.725060 | 3.1:-70410583 | None:intergenic |
| AACACTGTGTGCCACCACAG+AGG | 0.743629 | 3.1:+70411111 | MS.gene79231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACATTTTAATACTATAA+TGG | + | chr3.1:70411010-70411029 | MS.gene79231:CDS | 15.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | - | chr3.1:70410716-70410735 | None:intergenic | 20.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | + | chr3.1:70411819-70411838 | MS.gene79231:CDS | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | - | chr3.1:70411041-70411060 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | - | chr3.1:70411438-70411457 | None:intergenic | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | + | chr3.1:70411820-70411839 | MS.gene79231:CDS | 25.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | - | chr3.1:70411001-70411020 | None:intergenic | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | + | chr3.1:70411779-70411798 | MS.gene79231:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | + | chr3.1:70411780-70411799 | MS.gene79231:CDS | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | + | chr3.1:70411639-70411658 | MS.gene79231:CDS | 25.0% |
| AAAACATATGTCACCTGATT+TGG | + | chr3.1:70411298-70411317 | MS.gene79231:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | + | chr3.1:70411449-70411468 | MS.gene79231:CDS | 30.0% | |
| AGATTCAGTACTCAAATACA+TGG | + | chr3.1:70410812-70410831 | MS.gene79231:CDS | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | + | chr3.1:70411445-70411464 | MS.gene79231:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | - | chr3.1:70411448-70411467 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | - | chr3.1:70411064-70411083 | None:intergenic | 30.0% | |
| GATTCCATAAACAAAACCTT+TGG | - | chr3.1:70410862-70410881 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | + | chr3.1:70411065-70411084 | MS.gene79231:CDS | 30.0% | |
| GGTAAAAGGTAATCATAACA+TGG | + | chr3.1:70411760-70411779 | MS.gene79231:CDS | 30.0% | |
| GTAATAACAGAAGTGAGAAA+AGG | + | chr3.1:70411504-70411523 | MS.gene79231:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | - | chr3.1:70411314-70411333 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | + | chr3.1:70411316-70411335 | MS.gene79231:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | - | chr3.1:70411259-70411278 | None:intergenic | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | + | chr3.1:70411650-70411669 | MS.gene79231:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | + | chr3.1:70411649-70411668 | MS.gene79231:CDS | 30.0% |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | + | chr3.1:70410855-70410874 | MS.gene79231:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | + | chr3.1:70411527-70411546 | MS.gene79231:CDS | 30.0% |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | + | chr3.1:70411524-70411543 | MS.gene79231:CDS | 30.0% |
| AAGCAAATTAGGAACACGAT+GGG | - | chr3.1:70411606-70411625 | None:intergenic | 35.0% | |
| AATCAAGAAGAAGCTTTGCT+TGG | + | chr3.1:70411407-70411426 | MS.gene79231:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | + | chr3.1:70411176-70411195 | MS.gene79231:CDS | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | - | chr3.1:70411239-70411258 | None:intergenic | 35.0% | |
| AGTGACGATATTGATCCTTA+TGG | + | chr3.1:70410597-70410616 | MS.gene79231:CDS | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | + | chr3.1:70410824-70410843 | MS.gene79231:CDS | 35.0% | |
| CACAGGATTAGAAAATTGGT+GGG | + | chr3.1:70411175-70411194 | MS.gene79231:CDS | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | + | chr3.1:70411244-70411263 | MS.gene79231:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | + | chr3.1:70411802-70411821 | MS.gene79231:CDS | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | - | chr3.1:70411617-70411636 | None:intergenic | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | - | chr3.1:70411584-70411603 | None:intergenic | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | + | chr3.1:70410873-70410892 | MS.gene79231:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | - | chr3.1:70411236-70411255 | None:intergenic | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | + | chr3.1:70410650-70410669 | MS.gene79231:CDS | 35.0% | |
| TGTTCATCTTCTTGAAGGAT+AGG | - | chr3.1:70410996-70411015 | None:intergenic | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | + | chr3.1:70410872-70410891 | MS.gene79231:CDS | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | + | chr3.1:70411662-70411681 | MS.gene79231:CDS | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | - | chr3.1:70411176-70411195 | None:intergenic | 35.0% |
| !! | CACCTGATTTGGAGAAATTA+AGG | + | chr3.1:70411309-70411328 | MS.gene79231:CDS | 35.0% |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | - | chr3.1:70410887-70410906 | None:intergenic | 35.0% |
| AAAATGGGAGAGATTGAAGG+TGG | + | chr3.1:70411665-70411684 | MS.gene79231:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | + | chr3.1:70411666-70411685 | MS.gene79231:CDS | 40.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | - | chr3.1:70410631-70410650 | None:intergenic | 40.0% | |
| ATGGATGTATGCAAAGCCAA+AGG | + | chr3.1:70410843-70410862 | MS.gene79231:CDS | 40.0% | |
| CAAGCAAATTAGGAACACGA+TGG | - | chr3.1:70411607-70411626 | None:intergenic | 40.0% | |
| CACATGACCTTAAAAAGGCA+TGG | + | chr3.1:70411249-70411268 | MS.gene79231:CDS | 40.0% | |
| CCACAGGATTAGAAAATTGG+TGG | + | chr3.1:70411174-70411193 | MS.gene79231:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | - | chr3.1:70410903-70410922 | None:intergenic | 40.0% | |
| GAAAAGGGTAAACCAGTATC+AGG | + | chr3.1:70410888-70410907 | MS.gene79231:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | + | chr3.1:70411674-70411693 | MS.gene79231:CDS | 40.0% | |
| GGATGATCATGAATTCGAAG+CGG | + | chr3.1:70411727-70411746 | MS.gene79231:CDS | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | - | chr3.1:70410953-70410972 | None:intergenic | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | - | chr3.1:70411232-70411251 | None:intergenic | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | + | chr3.1:70411679-70411698 | MS.gene79231:CDS | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | - | chr3.1:70411233-70411252 | None:intergenic | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | + | chr3.1:70411678-70411697 | MS.gene79231:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | + | chr3.1:70411693-70411712 | MS.gene79231:CDS | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | + | chr3.1:70410659-70410678 | MS.gene79231:CDS | 40.0% |
| ! | CCACCAATTTTCTAATCCTG+TGG | - | chr3.1:70411177-70411196 | None:intergenic | 40.0% |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | + | chr3.1:70411265-70411284 | MS.gene79231:CDS | 40.0% |
| ! | TGAACATTGGCTGAATGATG+TGG | + | chr3.1:70411706-70411725 | MS.gene79231:CDS | 40.0% |
| !! | CAAAACAAGAAGCATCGAGA+AGG | + | chr3.1:70410769-70410788 | MS.gene79231:CDS | 40.0% |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | - | chr3.1:70411251-70411270 | None:intergenic | 40.0% |
| !!! | GATACTGGTTTACCCTTTTC+AGG | - | chr3.1:70410888-70410907 | None:intergenic | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | - | chr3.1:70410759-70410778 | None:intergenic | 40.0% |
| AGGAGCTGAAGAAACGTATG+TGG | + | chr3.1:70410679-70410698 | MS.gene79231:CDS | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | + | chr3.1:70411739-70411758 | MS.gene79231:CDS | 45.0% | |
| CGATATTGATCCTTATGGCG+TGG | + | chr3.1:70410602-70410621 | MS.gene79231:CDS | 45.0% | |
| CTTCTGATAGTTTACGCGAG+TGG | + | chr3.1:70410913-70410932 | MS.gene79231:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | + | chr3.1:70411185-70411204 | MS.gene79231:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | - | chr3.1:70411569-70411588 | None:intergenic | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | + | chr3.1:70411746-70411765 | MS.gene79231:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | + | chr3.1:70410683-70410702 | MS.gene79231:CDS | 45.0% | |
| GGCCCACAGGATTAGAAAAT+TGG | + | chr3.1:70411171-70411190 | MS.gene79231:CDS | 45.0% | |
| TCCGCAGAGTAAGTTACCTA+TGG | + | chr3.1:70411565-70411584 | MS.gene79231:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | - | chr3.1:70410972-70410991 | None:intergenic | 45.0% |
| ! | CTGCAAGAGATAGTGCTACT+TGG | + | chr3.1:70411372-70411391 | MS.gene79231:CDS | 45.0% |
| AGAGGGGAATTTCTCCTCCA+TGG | + | chr3.1:70411147-70411166 | MS.gene79231:CDS | 50.0% | |
| CTGATAGTTTACGCGAGTGG+TGG | + | chr3.1:70410916-70410935 | MS.gene79231:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | + | chr3.1:70411461-70411480 | MS.gene79231:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | + | chr3.1:70410956-70410975 | MS.gene79231:CDS | 50.0% | |
| AACACTGTGTGCCACCACAG+AGG | + | chr3.1:70411111-70411130 | MS.gene79231:CDS | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | + | chr3.1:70411129-70411148 | MS.gene79231:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | + | chr3.1:70411131-70411150 | MS.gene79231:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | - | chr3.1:70411125-70411144 | None:intergenic | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | + | chr3.1:70411130-70411149 | MS.gene79231:CDS | 55.0% | |
| GGAAGCCGAAGGAACTGAAG+AGG | + | chr3.1:70410623-70410642 | MS.gene79231:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | - | chr3.1:70411143-70411162 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | + | chr3.1:70411150-70411169 | MS.gene79231:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | + | chr3.1:70411206-70411225 | MS.gene79231:CDS | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | + | chr3.1:70411193-70411212 | MS.gene79231:CDS | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | - | chr3.1:70411128-70411147 | None:intergenic | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | - | chr3.1:70411167-70411186 | None:intergenic | 55.0% | |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | + | chr3.1:70411464-70411483 | MS.gene79231:CDS | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | - | chr3.1:70411220-70411239 | None:intergenic | 55.0% |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | - | chr3.1:70411219-70411238 | None:intergenic | 55.0% |
| AATCCTGTGGGCCACCATGG+AGG | - | chr3.1:70411164-70411183 | None:intergenic | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | + | chr3.1:70411114-70411133 | MS.gene79231:CDS | 60.0% | |
| CCTTATGGCGTGGAAGCCGA+AGG | + | chr3.1:70410612-70410631 | MS.gene79231:CDS | 60.0% | |
| CCTTCGGCTTCCACGCCATA+AGG | - | chr3.1:70410615-70410634 | None:intergenic | 60.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | + | chr3.1:70411158-70411177 | MS.gene79231:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70410585 | 70411874 | 70410585 | ID=MS.gene79231 |
| chr3.1 | mRNA | 70410585 | 70411874 | 70410585 | ID=MS.gene79231.t1;Parent=MS.gene79231 |
| chr3.1 | exon | 70410585 | 70411874 | 70410585 | ID=MS.gene79231.t1.exon1;Parent=MS.gene79231.t1 |
| chr3.1 | CDS | 70410585 | 70411874 | 70410585 | ID=cds.MS.gene79231.t1;Parent=MS.gene79231.t1 |
| Gene Sequence |
| Protein sequence |
