AlfalfaGEDB | MS.gene79231

M. sativa cultivar XinJiangDaYe / MS.gene79231

KEGG: K14514
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165 GO:0140110
PFAM: PF04873.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79231.t1	XP_003601983.1	94.6	429	22	1	1	429	1	428	2.80E-221	777.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79231.t1	Q9SLH0	61.6	279	93	5	10	280	28	300	3.9e-91	336.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79231.t1	G7J4B1	94.6	429	22	1	1	429	1	428	2.0e-221	777.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene79231.t1	TF	EIL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79231.t1	MTR_3g087530	95.105	429	20	1	1	429	1	428	0.0	785
MS.gene79231.t1	MTR_8g091370	52.477	444	172	7	15	423	5	444	2.61e-147	426
MS.gene79231.t1	MTR_5g087790	56.869	313	111	7	22	326	39	335	1.97e-113	345
MS.gene79231.t1	MTR_3g078770	57.718	298	102	6	2	280	9	301	1.17e-110	339
MS.gene79231.t1	MTR_2g098470	51.887	318	131	7	4	305	11	322	4.15e-101	314
MS.gene79231.t1	MTR_6g460640	48.175	274	121	6	16	280	26	287	9.63e-86	275
MS.gene79231.t1	MTR_6g060600	39.454	403	199	10	16	403	26	398	3.70e-84	271
MS.gene79231.t1	MTR_3g010790	50.495	202	90	3	83	280	1	196	2.31e-69	228
MS.gene79231.t1	MTR_1g024420	46.078	102	50	2	29	125	7	108	4.11e-24	97.1
MS.gene79231.t1	MTR_7g095580	41.250	80	43	1	72	151	1	76	9.12e-16	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79231.t1	AT5G65100	61.679	274	87	1	27	282	33	306	6.41e-120	360
MS.gene79231.t1	AT5G10120	53.939	330	140	5	25	349	16	338	1.49e-118	354
MS.gene79231.t1	AT2G27050	63.100	271	86	5	18	280	36	300	7.28e-115	348
MS.gene79231.t1	AT3G20770	55.625	320	113	9	13	322	31	331	6.22e-110	337
MS.gene79231.t1	AT1G73730	48.910	321	142	6	9	323	4	308	2.77e-99	307
MS.gene79231.t1	AT1G73730	48.910	321	142	6	9	323	16	320	3.41e-99	307
MS.gene79231.t1	AT5G21120	48.221	253	124	2	36	281	52	304	2.54e-78	252
MS.gene79231.t1	AT5G21120	48.221	253	124	2	36	281	52	304	2.54e-78	252
MS.gene79231.t1	AT5G21120	48.221	253	124	2	36	281	59	311	2.71e-78	252

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Find 93 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATATGTCACCTGATT+TGG	0.233366	3.1:+70411298	MS.gene79231:CDS
AAAATGGGAGAGATTGAAGG+TGG	0.578746	3.1:+70411665	MS.gene79231:CDS
AAATGGGAGAGATTGAAGGT+GGG	0.590105	3.1:+70411666	MS.gene79231:CDS
AAATTGTCTATTGTAGAGGA+AGG	0.619180	3.1:+70411449	MS.gene79231:CDS
AACACTGTGTGCCACCACAG+AGG	0.743629	3.1:+70411111	MS.gene79231:CDS
AACAGAAAGTGTGGACTATG+AGG	0.556253	3.1:+70410659	MS.gene79231:CDS
AAGCAAATTAGGAACACGAT+GGG	0.617311	3.1:-70411603	None:intergenic
AAGGTGGTGGGCCTTGTTCT+TGG	0.225823	3.1:-70411217	None:intergenic
AATCAAGAAGAAGCTTTGCT+TGG	0.469320	3.1:+70411407	MS.gene79231:CDS
AATCCTGTGGGCCACCATGG+AGG	0.673179	3.1:-70411161	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATATGTCACCTGATT+TGG	+	chr3.1:70411298-70411317	MS.gene79231:CDS	30.0%
AAATTGTCTATTGTAGAGGA+AGG	+	chr3.1:70411449-70411468	MS.gene79231:CDS	30.0%
AGATTCAGTACTCAAATACA+TGG	+	chr3.1:70410812-70410831	MS.gene79231:CDS	30.0%
CCATAAATTGTCTATTGTAG+AGG	+	chr3.1:70411445-70411464	MS.gene79231:CDS	30.0%
CCTCTACAATAGACAATTTA+TGG	-	chr3.1:70411448-70411467	None:intergenic	30.0%
GAGTTGAATCTTGTAAATCT+TGG	-	chr3.1:70411064-70411083	None:intergenic	30.0%
GATTCCATAAACAAAACCTT+TGG	-	chr3.1:70410862-70410881	None:intergenic	30.0%
GATTTACAAGATTCAACTCT+TGG	+	chr3.1:70411065-70411084	MS.gene79231:CDS	30.0%
GGTAAAAGGTAATCATAACA+TGG	+	chr3.1:70411760-70411779	MS.gene79231:CDS	30.0%
GTAATAACAGAAGTGAGAAA+AGG	+	chr3.1:70411504-70411523	MS.gene79231:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	70410585	70411874	70410585	ID=MS.gene79231
chr3.1	mRNA	70410585	70411874	70410585	ID=MS.gene79231.t1;Parent=MS.gene79231
chr3.1	exon	70410585	70411874	70410585	ID=MS.gene79231.t1.exon1;Parent=MS.gene79231.t1
chr3.1	CDS	70410585	70411874	70410585	ID=cds.MS.gene79231.t1;Parent=MS.gene79231.t1

Gene Sequence

>MS.gene79231

ATGGTGGTGATCAGTGACGATATTGATCCTTATGGCGTGGAAGCCGAAGGAACTGAAGAGGTAGATGAAACTGAAACAGAAAGTGTGGACTATGAGGAGCTGAAGAAACGTATGTGGAAGGATAAGATCCTTTTACAAAAGTTCAAAGAAAAACAAGAGAACAACACTGAACCTGAGCAACAAGCAAAACAAGAAGCATCGAGAAGGAAAAAGATGTCAAGAGCACAAGATTCAGTACTCAAATACATGGCAAAGATCATGGATGTATGCAAAGCCAAAGGTTTTGTTTATGGAATCATCCCTGAAAAGGGTAAACCAGTATCAGGTTCTTCTGATAGTTTACGCGAGTGGTGGAAAGATCAAATCCGTTTTGATCAAAGTGCACCACTCGCGGTTGCAAAATACTTACCTATCCTTCAAGAAGATGAACATTTTAATACTATAATGGCTGATCCAAATTCTTACATACATCTTCTCCAAGATTTACAAGATTCAACTCTTGGTTCGCTTCTTTCTGCTTTAATGCAACACTGTGTGCCACCACAGAGGAGGTTTCCACTCGAGAGGGGAATTTCTCCTCCATGGTGGCCCACAGGATTAGAAAATTGGTGGGGTGAACAAGGTCTGTTGGCCCAAGAACAAGGCCCACCACCTTATAAGAAACCACATGACCTTAAAAAGGCATGGAAAGTTTCTGTTTTGGCTAGTGTTATAAAACATATGTCACCTGATTTGGAGAAATTAAGGAAGTTGGTTACTCAGTCAAAAACTTTGCAAGATAAGATGACTGCAAGAGATAGTGCTACTTGGTCAAAAGTTATGAATCAAGAAGAAGCTTTGCTTGGAGTTACCGATAAATGCCATAAATTGTCTATTGTAGAGGAAGGTGAAAGCTCTGGCGGTAGTAGCAGCAGTAGTAGTAATAACAGAAGTGAGAAAAGGAAGTTTGTTTTTGATGTTGGTGGTGATGATGCAGATTGTCCGCAGAGTAAGTTACCTATGGCTATGAGTTTAACAACCCATCGTGTTCCTAATTTGCTTGATTGTGATGCAAGAATTGAAAATGTTGATGATTGGTTGAAAATGGGAGAGATTGAAGGTGGGAAATTTGGATGGGATGTTGAACATTGGCTGAATGATGTGGATGATCATGAATTCGAAGCGGCAATCGAAATGGTAAAAGGTAATCATAACATGGATTTTACTCAAAATCAAGGGCATAATCTACATGATCAAGAGGAAGAAAAATCTATTTGGGACTTTAGATATCAATATCCAGCGCAAGACTAA

Protein sequence

>MS.gene79231.t1

MVVISDDIDPYGVEAEGTEEVDETETESVDYEELKKRMWKDKILLQKFKEKQENNTEPEQQAKQEASRRKKMSRAQDSVLKYMAKIMDVCKAKGFVYGIIPEKGKPVSGSSDSLREWWKDQIRFDQSAPLAVAKYLPILQEDEHFNTIMADPNSYIHLLQDLQDSTLGSLLSALMQHCVPPQRRFPLERGISPPWWPTGLENWWGEQGLLAQEQGPPPYKKPHDLKKAWKVSVLASVIKHMSPDLEKLRKLVTQSKTLQDKMTARDSATWSKVMNQEEALLGVTDKCHKLSIVEEGESSGGSSSSSSNNRSEKRKFVFDVGGDDADCPQSKLPMAMSLTTHRVPNLLDCDARIENVDDWLKMGEIEGGKFGWDVEHWLNDVDDHEFEAAIEMVKGNHNMDFTQNQGHNLHDQEEEKSIWDFRYQYPAQD