Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79308.t1 | GAU32889.1 | 43.7 | 552 | 137 | 7 | 51 | 428 | 20 | 571 | 6.40E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79308.t1 | Q9LKR4 | 29.5 | 207 | 134 | 5 | 92 | 291 | 61 | 262 | 6.7e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79308.t1 | A0A2Z6NML7 | 43.7 | 552 | 137 | 7 | 51 | 428 | 20 | 571 | 4.6e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79308.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79308.t1 | MTR_1g070355 | 48.106 | 264 | 127 | 3 | 26 | 279 | 4 | 267 | 6.51e-75 | 246 |
| MS.gene79308.t1 | MTR_5g076070 | 32.283 | 254 | 149 | 4 | 26 | 278 | 14 | 245 | 1.95e-37 | 139 |
| MS.gene79308.t1 | MTR_6g022080 | 34.239 | 184 | 121 | 0 | 67 | 250 | 66 | 249 | 1.51e-36 | 135 |
| MS.gene79308.t1 | MTR_0060s0090 | 48.201 | 139 | 52 | 2 | 35 | 173 | 25 | 143 | 1.58e-32 | 121 |
| MS.gene79308.t1 | MTR_2g101460 | 47.183 | 142 | 71 | 1 | 50 | 191 | 23 | 160 | 5.46e-32 | 122 |
| MS.gene79308.t1 | MTR_2g101460 | 47.183 | 142 | 71 | 1 | 50 | 191 | 13 | 150 | 7.40e-32 | 121 |
| MS.gene79308.t1 | MTR_6g463250 | 47.761 | 134 | 49 | 2 | 45 | 172 | 41 | 159 | 1.41e-31 | 119 |
| MS.gene79308.t1 | MTR_7g446520 | 28.679 | 265 | 159 | 6 | 18 | 275 | 20 | 261 | 7.69e-26 | 108 |
| MS.gene79308.t1 | MTR_3g448650 | 45.536 | 112 | 57 | 1 | 50 | 161 | 50 | 157 | 1.07e-25 | 103 |
| MS.gene79308.t1 | MTR_1g052260 | 44.231 | 104 | 58 | 0 | 65 | 168 | 55 | 158 | 8.55e-25 | 100 |
| MS.gene79308.t1 | MTR_4g050510 | 37.795 | 127 | 65 | 1 | 97 | 223 | 89 | 201 | 1.77e-22 | 95.5 |
| MS.gene79308.t1 | MTR_6g053140 | 33.333 | 174 | 97 | 5 | 26 | 190 | 34 | 197 | 7.65e-22 | 94.0 |
| MS.gene79308.t1 | MTR_7g028855 | 28.251 | 223 | 152 | 5 | 13 | 229 | 43 | 263 | 4.84e-18 | 86.7 |
| MS.gene79308.t1 | MTR_8g066350 | 33.071 | 127 | 67 | 1 | 65 | 191 | 58 | 166 | 6.46e-17 | 78.6 |
| MS.gene79308.t1 | MTR_0402s0040 | 31.548 | 168 | 107 | 5 | 90 | 255 | 32 | 193 | 1.09e-16 | 82.8 |
| MS.gene79308.t1 | MTR_0604s0020 | 41.892 | 74 | 43 | 0 | 97 | 170 | 3 | 76 | 1.11e-13 | 66.6 |
| MS.gene79308.t1 | MTR_7g446480 | 34.783 | 115 | 73 | 1 | 163 | 275 | 140 | 254 | 4.95e-13 | 70.5 |
| MS.gene79308.t1 | MTR_7g446510 | 34.783 | 115 | 73 | 1 | 163 | 275 | 155 | 269 | 9.60e-12 | 66.6 |
| MS.gene79308.t1 | MTR_3g450850 | 29.814 | 161 | 82 | 5 | 92 | 223 | 53 | 211 | 1.06e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79308.t1 | AT4G38180 | 28.980 | 245 | 160 | 8 | 90 | 327 | 77 | 314 | 1.69e-15 | 79.7 |
| MS.gene79308.t1 | AT5G28530 | 32.500 | 160 | 104 | 3 | 92 | 248 | 61 | 219 | 3.55e-15 | 78.6 |
| MS.gene79308.t1 | AT5G28530 | 32.500 | 160 | 104 | 3 | 92 | 248 | 61 | 219 | 4.04e-15 | 78.2 |
| MS.gene79308.t1 | AT5G28530 | 32.500 | 160 | 104 | 3 | 92 | 248 | 61 | 219 | 4.80e-15 | 78.2 |
| MS.gene79308.t1 | AT5G28530 | 32.500 | 160 | 104 | 3 | 92 | 248 | 61 | 219 | 4.80e-15 | 78.2 |
| MS.gene79308.t1 | AT5G28530 | 32.500 | 160 | 104 | 3 | 92 | 248 | 61 | 219 | 4.83e-15 | 78.2 |
Find 102 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACACCTGGTATCATTTC+TGG | 0.155992 | 6.3:+56441618 | None:intergenic |
| ACACAAATGGTTCACAATAT+TGG | 0.219824 | 6.3:-56440134 | MS.gene79308:CDS |
| CACAAATGGTTCACAATATT+GGG | 0.257023 | 6.3:-56440133 | MS.gene79308:CDS |
| ATTTCAAATGTTCGTGTCTT+AGG | 0.296750 | 6.3:-56440287 | MS.gene79308:CDS |
| GGGAATGCTATAGTCATAAA+TGG | 0.304640 | 6.3:-56441889 | MS.gene79308:CDS |
| CCTGTGTAAAACTAGATTCT+TGG | 0.335728 | 6.3:+56440194 | None:intergenic |
| ATTGCACCATACGTTTGATA+TGG | 0.351243 | 6.3:+56441412 | None:intergenic |
| CCAAGTTCTGAGGGACCGTT+TGG | 0.359223 | 6.3:-56441728 | MS.gene79308:CDS |
| CAATATTAACATCGAGGAAA+TGG | 0.372866 | 6.3:-56442007 | MS.gene79308:CDS |
| CCAAACGGTCCCTCAGAACT+TGG | 0.376804 | 6.3:+56441728 | None:intergenic |
| TTCAGACGAAGGAGATAATA+TGG | 0.381516 | 6.3:-56441977 | MS.gene79308:CDS |
| CTTCCACCAGGCGTAACAAT+TGG | 0.385395 | 6.3:+56439868 | None:intergenic |
| GTTTCAAAGTACTGTGGAAA+TGG | 0.394957 | 6.3:-56440348 | MS.gene79308:CDS |
| GCTTCTGTTGTAGGTTATTG+AGG | 0.405287 | 6.3:-56442061 | MS.gene79308:intron |
| CCACACCTGGTATCATTTCT+GGG | 0.408982 | 6.3:+56441619 | None:intergenic |
| AGCGATTCATCCGAGTCTAA+TGG | 0.410491 | 6.3:-56441910 | MS.gene79308:CDS |
| GGGATTCTCAAATTACTTCA+AGG | 0.416997 | 6.3:-56440113 | MS.gene79308:CDS |
| AGTCGTCGACGAAAGTTTAC+TGG | 0.423532 | 6.3:-56439929 | MS.gene79308:CDS |
| TCATGGTATGCAAGGGTAAA+CGG | 0.428944 | 6.3:-56441769 | MS.gene79308:CDS |
| AAGGATTTGTATAATCAATC+AGG | 0.433589 | 6.3:-56441346 | MS.gene79308:CDS |
| GAGATAATATGGATGACAAT+GGG | 0.436783 | 6.3:-56441966 | MS.gene79308:CDS |
| CTGTGTAAAACTAGATTCTT+GGG | 0.438174 | 6.3:+56440195 | None:intergenic |
| CCTACTTGTGTGAGGACTAA+AGG | 0.444636 | 6.3:-56439904 | MS.gene79308:CDS |
| CTACTTGTGTGAGGACTAAA+GGG | 0.449197 | 6.3:-56439903 | MS.gene79308:CDS |
| GCGATTCATCCGAGTCTAAT+GGG | 0.449731 | 6.3:-56441909 | MS.gene79308:CDS |
| TGTCTTAGGATGGAGTCGTT+TGG | 0.452899 | 6.3:-56440273 | MS.gene79308:CDS |
| CACGAACATTTGAAATCTAC+AGG | 0.467229 | 6.3:+56440294 | None:intergenic |
| TGTAGTCAGTGTGGTGTGAT+AGG | 0.474905 | 6.3:-56439829 | MS.gene79308:CDS |
| TATTCAGTTGTCGAAGGATG+TGG | 0.485194 | 6.3:-56440079 | MS.gene79308:CDS |
| CCTTTAGTCCTCACACAAGT+AGG | 0.488782 | 6.3:+56439904 | None:intergenic |
| GGTGCAATGGCTAATTCATC+AGG | 0.491612 | 6.3:-56441397 | MS.gene79308:CDS |
| TCAATCTCAATCAAATCAGT+TGG | 0.493229 | 6.3:+56441460 | None:intergenic |
| TTGCATATAATTTCTACTCA+TGG | 0.494106 | 6.3:-56441786 | MS.gene79308:CDS |
| AGAGAACAGGGGATTGACCT+TGG | 0.494325 | 6.3:-56441659 | MS.gene79308:CDS |
| TGCGTATAACCACGAGCTGT+TGG | 0.496702 | 6.3:-56441527 | MS.gene79308:CDS |
| CAAATTACTTCAAGGTATGC+GGG | 0.499297 | 6.3:-56440105 | MS.gene79308:CDS |
| CTAAATTCATCAGATATGAA+TGG | 0.499723 | 6.3:-56442173 | None:intergenic |
| TTCTCCCTTCCGCCTCTCCA+AGG | 0.501852 | 6.3:+56441642 | None:intergenic |
| TTGTTACGCCTGGTGGAAGT+AGG | 0.501932 | 6.3:-56439864 | MS.gene79308:CDS |
| GTTATACGCAAATTCAAATA+CGG | 0.516568 | 6.3:+56441540 | None:intergenic |
| CTGTTGGATGGTTTGCTATG+TGG | 0.521362 | 6.3:-56441511 | MS.gene79308:CDS |
| CAAATGTTCGTGTCTTAGGA+TGG | 0.523067 | 6.3:-56440283 | MS.gene79308:CDS |
| GTCGAAGGATGTGGCTGAGA+GGG | 0.529678 | 6.3:-56440070 | MS.gene79308:CDS |
| ATTTCTACTCATGGTATGCA+AGG | 0.531446 | 6.3:-56441777 | MS.gene79308:CDS |
| TCAAATTACTTCAAGGTATG+CGG | 0.532144 | 6.3:-56440106 | MS.gene79308:CDS |
| ATTGACCTTGGAGAGGCGGA+AGG | 0.533971 | 6.3:-56441647 | MS.gene79308:CDS |
| TAGACATTGTTTCGAAGCGT+TGG | 0.536274 | 6.3:-56441570 | MS.gene79308:CDS |
| CAAGTTCTGAGGGACCGTTT+GGG | 0.542763 | 6.3:-56441727 | MS.gene79308:CDS |
| GGTGTTAGCTTTCTATGTGC+CGG | 0.543539 | 6.3:+56441481 | None:intergenic |
| AAGAATAAAACAACAACTGT+TGG | 0.546824 | 6.3:-56439982 | MS.gene79308:CDS |
| ACTAATCCAATTGTTACGCC+TGG | 0.558263 | 6.3:-56439874 | MS.gene79308:CDS |
| ATTGAAAAGTATAAGAATGT+TGG | 0.559478 | 6.3:-56441442 | MS.gene79308:CDS |
| GCTGCAGAACATTACCCAAA+CGG | 0.563552 | 6.3:+56441713 | None:intergenic |
| TATAACCACGAGCTGTTGGA+TGG | 0.564037 | 6.3:-56441523 | MS.gene79308:CDS |
| TGAAATTCAAGAGATGTCCA+TGG | 0.566346 | 6.3:-56440385 | MS.gene79308:CDS |
| GTTCGAGCAAGATACACAAA+TGG | 0.566756 | 6.3:-56440147 | MS.gene79308:CDS |
| GGAGATAATATGGATGACAA+TGG | 0.571879 | 6.3:-56441967 | MS.gene79308:CDS |
| TTCGGAAGACCCAAGTTCTG+AGG | 0.573488 | 6.3:-56441738 | MS.gene79308:CDS |
| AATCCAATTGTTACGCCTGG+TGG | 0.574334 | 6.3:-56439871 | MS.gene79308:CDS |
| TTTCTGTAGATGTAGTTGAA+AGG | 0.575027 | 6.3:-56441831 | MS.gene79308:CDS |
| GAGAACCCAGAAATGATACC+AGG | 0.578139 | 6.3:-56441624 | MS.gene79308:CDS |
| ATATCAAACGTATGGTGCAA+TGG | 0.580935 | 6.3:-56441410 | MS.gene79308:CDS |
| CTTTAGTCCTCACACAAGTA+GGG | 0.582163 | 6.3:+56439905 | None:intergenic |
| CCACACTGACTACATGATTG+AGG | 0.582317 | 6.3:+56439838 | None:intergenic |
| GTAAGACCATATCAAACGTA+TGG | 0.586746 | 6.3:-56441418 | MS.gene79308:CDS |
| TTGGTATTGATGCTAGCAGT+GGG | 0.587532 | 6.3:-56439963 | MS.gene79308:CDS |
| AACTTTGTAGATAGAACCCA+TGG | 0.589394 | 6.3:+56440368 | None:intergenic |
| TTGACCTTGGAGAGGCGGAA+GGG | 0.590549 | 6.3:-56441646 | MS.gene79308:CDS |
| GGGGATTGACCTTGGAGAGG+CGG | 0.591821 | 6.3:-56441651 | MS.gene79308:CDS |
| ATCAGATATGAATGGATGCA+TGG | 0.592737 | 6.3:-56442165 | None:intergenic |
| GCTATAGTCATAAATGGCAT+CGG | 0.596967 | 6.3:-56441883 | MS.gene79308:CDS |
| GTAAAACTAGATTCTTGGGA+AGG | 0.598080 | 6.3:+56440199 | None:intergenic |
| GGGAATTATTCAGTTGTCGA+AGG | 0.603195 | 6.3:-56440085 | MS.gene79308:CDS |
| GAAATTCAAGAGATGTCCAT+GGG | 0.603913 | 6.3:-56440384 | MS.gene79308:CDS |
| TCTGTTGTAGGTTATTGAGG+AGG | 0.605874 | 6.3:-56442058 | MS.gene79308:intron |
| GAATGGATGCATGGATGATG+AGG | 0.606403 | 6.3:-56442156 | MS.gene79308:CDS |
| ACAACAATAATATGATCGCA+AGG | 0.609509 | 6.3:+56440246 | None:intergenic |
| TCGGAAGACCCAAGTTCTGA+GGG | 0.617413 | 6.3:-56441737 | MS.gene79308:CDS |
| TTAGTTTCATCTGACTCTTG+CGG | 0.617850 | 6.3:-56441310 | MS.gene79308:CDS |
| CAAACGGTCCCTCAGAACTT+GGG | 0.622569 | 6.3:+56441729 | None:intergenic |
| GCAATGGCTAATTCATCAGG+TGG | 0.625760 | 6.3:-56441394 | MS.gene79308:CDS |
| TACTGGACCCTACTTGTGTG+AGG | 0.626363 | 6.3:-56439912 | MS.gene79308:CDS |
| TTTCTACTCATGGTATGCAA+GGG | 0.627306 | 6.3:-56441776 | MS.gene79308:CDS |
| ATGGACGAAGCTTCAGACGA+AGG | 0.631163 | 6.3:-56441988 | MS.gene79308:CDS |
| TACAAAGTTTCAAAGTACTG+TGG | 0.634037 | 6.3:-56440354 | MS.gene79308:CDS |
| ACTGTGGAAATGGAAGTGTC+TGG | 0.638067 | 6.3:-56440338 | MS.gene79308:CDS |
| TATAGCATTCCCATTAGACT+CGG | 0.641750 | 6.3:+56441900 | None:intergenic |
| GCTTCGAAACAATGTCTATG+TGG | 0.645082 | 6.3:+56441575 | None:intergenic |
| AATGGGGCTAATGAGTGTGA+TGG | 0.645283 | 6.3:-56441949 | MS.gene79308:CDS |
| CCCAGAAATGATACCAGGTG+TGG | 0.648094 | 6.3:-56441619 | MS.gene79308:CDS |
| TGTCGAAGGATGTGGCTGAG+AGG | 0.652941 | 6.3:-56440071 | MS.gene79308:CDS |
| ATAATCAATCAGGAAGACAA+AGG | 0.657924 | 6.3:-56441336 | MS.gene79308:CDS |
| GCAAACCATCCAACAGCTCG+TGG | 0.662133 | 6.3:+56441518 | None:intergenic |
| ACAGGGGATTGACCTTGGAG+AGG | 0.670051 | 6.3:-56441654 | MS.gene79308:CDS |
| TGTGTGAGGACTAAAGGGTG+TGG | 0.670824 | 6.3:-56439898 | MS.gene79308:CDS |
| TGAGGACGCCTACTTCCACC+AGG | 0.673688 | 6.3:+56439856 | None:intergenic |
| AGATAATATGGATGACAATG+GGG | 0.688595 | 6.3:-56441965 | MS.gene79308:CDS |
| CCTCAATCATGTAGTCAGTG+TGG | 0.690892 | 6.3:-56439838 | MS.gene79308:CDS |
| GTTGGTATTGATGCTAGCAG+TGG | 0.710979 | 6.3:-56439964 | MS.gene79308:CDS |
| CACTAAGAAAATCTACAATG+CGG | 0.712293 | 6.3:+56440022 | None:intergenic |
| TAATGACAATATTAACATCG+AGG | 0.732342 | 6.3:-56442013 | MS.gene79308:CDS |
| TGGTATTGATGCTAGCAGTG+GGG | 0.757439 | 6.3:-56439962 | MS.gene79308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAGTAAAAAGTGATTATT+AGG | - | chr6.3:56439843-56439862 | MS.gene79308:CDS | 20.0% |
| !!! | ATTGAAAAGTATAAGAATGT+TGG | - | chr6.3:56440532-56440551 | MS.gene79308:intron | 20.0% |
| !!! | ATTGTATTTGTTTTTCCTAT+AGG | + | chr6.3:56440847-56440866 | None:intergenic | 20.0% |
| !!! | TCGTATGAATTATGAATTTT+TGG | - | chr6.3:56440798-56440817 | MS.gene79308:intron | 20.0% |
| !!! | TTTTGGAAATATACTCTTTA+TGG | + | chr6.3:56441051-56441070 | None:intergenic | 20.0% |
| ! | AAGAATAAAACAACAACTGT+TGG | - | chr6.3:56441992-56442011 | MS.gene79308:CDS | 25.0% |
| ! | AAGGATTTGTATAATCAATC+AGG | - | chr6.3:56440628-56440647 | MS.gene79308:intron | 25.0% |
| ! | ATACTATAGACAAAGATAAG+AGG | - | chr6.3:56440743-56440762 | MS.gene79308:intron | 25.0% |
| ! | ATATCTTAAAAGATGCATGT+TGG | - | chr6.3:56441145-56441164 | MS.gene79308:intron | 25.0% |
| ! | CAAGGTTTCAAATTTATGAT+TGG | - | chr6.3:56439881-56439900 | MS.gene79308:CDS | 25.0% |
| ! | GAATAAGTTTGAAGAACTAT+GGG | - | chr6.3:56441181-56441200 | MS.gene79308:intron | 25.0% |
| ! | GTATGCAAAAAAAAGAATGT+GGG | - | chr6.3:56441256-56441275 | MS.gene79308:intron | 25.0% |
| ! | GTTATACGCAAATTCAAATA+CGG | + | chr6.3:56440437-56440456 | None:intergenic | 25.0% |
| ! | TAAAATTATGCTTCTGTTGT+AGG | - | chr6.3:56439904-56439923 | MS.gene79308:CDS | 25.0% |
| ! | TAATGACAATATTAACATCG+AGG | - | chr6.3:56439961-56439980 | MS.gene79308:CDS | 25.0% |
| ! | TATCTTAAAAGATGCATGTT+GGG | - | chr6.3:56441146-56441165 | MS.gene79308:intron | 25.0% |
| ! | TGAATAAGTTTGAAGAACTA+TGG | - | chr6.3:56441180-56441199 | MS.gene79308:intron | 25.0% |
| ! | TGTATGCAAAAAAAAGAATG+TGG | - | chr6.3:56441255-56441274 | MS.gene79308:intron | 25.0% |
| ! | TTGCATATAATTTCTACTCA+TGG | - | chr6.3:56440188-56440207 | MS.gene79308:CDS | 25.0% |
| !!! | AAGATTTTTTCAGAGCATTA+CGG | + | chr6.3:56441553-56441572 | None:intergenic | 25.0% |
| !!! | ATGAATTTTTGGTGATGTAT+TGG | - | chr6.3:56440809-56440828 | MS.gene79308:intron | 25.0% |
| !!! | TATTGTTGTTTTGATGTATC+TGG | - | chr6.3:56441742-56441761 | MS.gene79308:CDS | 25.0% |
| AAAAAATCTCCCTTGTAAAC+TGG | + | chr6.3:56441523-56441542 | None:intergenic | 30.0% | |
| ACAACAATAATATGATCGCA+AGG | + | chr6.3:56441731-56441750 | None:intergenic | 30.0% | |
| ACACAAATGGTTCACAATAT+TGG | - | chr6.3:56441840-56441859 | MS.gene79308:CDS | 30.0% | |
| AGATAATATGGATGACAATG+GGG | - | chr6.3:56440009-56440028 | MS.gene79308:CDS | 30.0% | |
| ATAATCAATCAGGAAGACAA+AGG | - | chr6.3:56440638-56440657 | MS.gene79308:intron | 30.0% | |
| ATTTCAAATGTTCGTGTCTT+AGG | - | chr6.3:56441687-56441706 | MS.gene79308:CDS | 30.0% | |
| CAATATTAACATCGAGGAAA+TGG | - | chr6.3:56439967-56439986 | MS.gene79308:CDS | 30.0% | |
| CACAAATGGTTCACAATATT+GGG | - | chr6.3:56441841-56441860 | MS.gene79308:CDS | 30.0% | |
| CACTAAGAAAATCTACAATG+CGG | + | chr6.3:56441955-56441974 | None:intergenic | 30.0% | |
| CTCGAAATCGAAAATATGTA+AGG | + | chr6.3:56441418-56441437 | None:intergenic | 30.0% | |
| CTGTGTAAAACTAGATTCTT+GGG | + | chr6.3:56441782-56441801 | None:intergenic | 30.0% | |
| GAAGAGATGGTTGAAAAATT+TGG | - | chr6.3:56441203-56441222 | MS.gene79308:intron | 30.0% | |
| GAGATAATATGGATGACAAT+GGG | - | chr6.3:56440008-56440027 | MS.gene79308:CDS | 30.0% | |
| TCAAATTACTTCAAGGTATG+CGG | - | chr6.3:56441868-56441887 | MS.gene79308:CDS | 30.0% | |
| TCAATCTCAATCAAATCAGT+TGG | + | chr6.3:56440517-56440536 | None:intergenic | 30.0% | |
| TTGGTTATGATGATTAACAC+CGG | + | chr6.3:56440889-56440908 | None:intergenic | 30.0% | |
| TTTCTGTAGATGTAGTTGAA+AGG | - | chr6.3:56440143-56440162 | MS.gene79308:CDS | 30.0% | |
| ! | AGGTATTTACATTTGAAGCA+AGG | - | chr6.3:56439863-56439882 | MS.gene79308:CDS | 30.0% |
| ! | ATTTTGTCCAGCAATTTCAT+AGG | - | chr6.3:56441390-56441409 | MS.gene79308:CDS | 30.0% |
| ! | CATAATCTATGATGTGCTTT+TGG | + | chr6.3:56441068-56441087 | None:intergenic | 30.0% |
| !! | CAAGTTAGGTTTTGTGAAAA+AGG | - | chr6.3:56440609-56440628 | MS.gene79308:intron | 30.0% |
| !! | CATCGGTGATATTTTAAAGA+TGG | - | chr6.3:56440108-56440127 | MS.gene79308:CDS | 30.0% |
| !! | TACAAAGTTTCAAAGTACTG+TGG | - | chr6.3:56441620-56441639 | MS.gene79308:CDS | 30.0% |
| !!! | ATCAAAGGAGAATTTTTTGC+AGG | - | chr6.3:56441290-56441309 | MS.gene79308:CDS | 30.0% |
| AACATCACCGTCAGTTATTA+CGG | + | chr6.3:56441015-56441034 | None:intergenic | 35.0% | |
| AACTTTGTAGATAGAACCCA+TGG | + | chr6.3:56441609-56441628 | None:intergenic | 35.0% | |
| ACACCGGAGAAAATAACAAA+CGG | + | chr6.3:56440873-56440892 | None:intergenic | 35.0% | |
| AGAGACATATGTTTGGTTGT+TGG | - | chr6.3:56440950-56440969 | MS.gene79308:intron | 35.0% | |
| AGGTTTAGTTATGAGAGAGA+CGG | - | chr6.3:56440926-56440945 | MS.gene79308:intron | 35.0% | |
| ATATCAAACGTATGGTGCAA+TGG | - | chr6.3:56440564-56440583 | MS.gene79308:intron | 35.0% | |
| ATTGCACCATACGTTTGATA+TGG | + | chr6.3:56440565-56440584 | None:intergenic | 35.0% | |
| ATTTCTACTCATGGTATGCA+AGG | - | chr6.3:56440197-56440216 | MS.gene79308:CDS | 35.0% | |
| CAAACTGTTGTCTTTACAAC+AGG | - | chr6.3:56440906-56440925 | MS.gene79308:intron | 35.0% | |
| CAAATTACTTCAAGGTATGC+GGG | - | chr6.3:56441869-56441888 | MS.gene79308:CDS | 35.0% | |
| CACATCATAGATTATGTGCT+TGG | - | chr6.3:56441072-56441091 | MS.gene79308:intron | 35.0% | |
| CCTGTGTAAAACTAGATTCT+TGG | + | chr6.3:56441783-56441802 | None:intergenic | 35.0% | |
| CCTTTATCCGTAATAACTGA+CGG | - | chr6.3:56441005-56441024 | MS.gene79308:intron | 35.0% | |
| CTGTTGTAAAGACAACAGTT+TGG | + | chr6.3:56440908-56440927 | None:intergenic | 35.0% | |
| GAAATTCAAGAGATGTCCAT+GGG | - | chr6.3:56441590-56441609 | MS.gene79308:CDS | 35.0% | |
| GCTATAGTCATAAATGGCAT+CGG | - | chr6.3:56440091-56440110 | MS.gene79308:CDS | 35.0% | |
| GGAGATAATATGGATGACAA+TGG | - | chr6.3:56440007-56440026 | MS.gene79308:CDS | 35.0% | |
| GGGAATGCTATAGTCATAAA+TGG | - | chr6.3:56440085-56440104 | MS.gene79308:CDS | 35.0% | |
| GGGATTCTCAAATTACTTCA+AGG | - | chr6.3:56441861-56441880 | MS.gene79308:CDS | 35.0% | |
| GTAAAACTAGATTCTTGGGA+AGG | + | chr6.3:56441778-56441797 | None:intergenic | 35.0% | |
| GTAAGACCATATCAAACGTA+TGG | - | chr6.3:56440556-56440575 | MS.gene79308:intron | 35.0% | |
| TATAGCATTCCCATTAGACT+CGG | + | chr6.3:56440077-56440096 | None:intergenic | 35.0% | |
| TCTGACTATCATTCCAACTA+TGG | - | chr6.3:56441446-56441465 | MS.gene79308:CDS | 35.0% | |
| TGAAATTCAAGAGATGTCCA+TGG | - | chr6.3:56441589-56441608 | MS.gene79308:CDS | 35.0% | |
| TTAGTTTCATCTGACTCTTG+CGG | - | chr6.3:56440664-56440683 | MS.gene79308:intron | 35.0% | |
| TTCAGACGAAGGAGATAATA+TGG | - | chr6.3:56439997-56440016 | MS.gene79308:CDS | 35.0% | |
| TTTCCTATAGGTTGCATCAA+AGG | + | chr6.3:56440835-56440854 | None:intergenic | 35.0% | |
| TTTCTACTCATGGTATGCAA+GGG | - | chr6.3:56440198-56440217 | MS.gene79308:CDS | 35.0% | |
| ! | CACGAACATTTGAAATCTAC+AGG | + | chr6.3:56441683-56441702 | None:intergenic | 35.0% |
| ! | TAAGGTACCTATGAAATTGC+TGG | + | chr6.3:56441400-56441419 | None:intergenic | 35.0% |
| ! | TCGCAAACTAGTTTGCAATA+CGG | + | chr6.3:56441477-56441496 | None:intergenic | 35.0% |
| !! | AGCAAACTTTTGTTTGTTCG+CGG | - | chr6.3:56440281-56440300 | MS.gene79308:CDS | 35.0% |
| !! | GTTTCAAAGTACTGTGGAAA+TGG | - | chr6.3:56441626-56441645 | MS.gene79308:CDS | 35.0% |
| !! | TTCTTAGTGCTGAACTTTTG+AGG | - | chr6.3:56441966-56441985 | MS.gene79308:CDS | 35.0% |
| !! | TTTGCTATGTGGTCTTTTAC+CGG | - | chr6.3:56440474-56440493 | MS.gene79308:intron | 35.0% |
| !! | TTTTCAGAGCATTACGGAAA+AGG | + | chr6.3:56441547-56441566 | None:intergenic | 35.0% |
| !!! | AGAATCTAGTTTTACACAGG+TGG | - | chr6.3:56441783-56441802 | MS.gene79308:CDS | 35.0% |
| !!! | CCAAGAATCTAGTTTTACAC+AGG | - | chr6.3:56441780-56441799 | MS.gene79308:CDS | 35.0% |
| AAGATGCATGTTGGGTGATA+TGG | - | chr6.3:56441154-56441173 | MS.gene79308:intron | 40.0% | |
| ACTAATCCAATTGTTACGCC+TGG | - | chr6.3:56442100-56442119 | MS.gene79308:intron | 40.0% | |
| AGACGGAAGAGACATATGTT+TGG | - | chr6.3:56440943-56440962 | MS.gene79308:intron | 40.0% | |
| CAAATGTTCGTGTCTTAGGA+TGG | - | chr6.3:56441691-56441710 | MS.gene79308:CDS | 40.0% | |
| CACCGGAGAAAATAACAAAC+GGG | + | chr6.3:56440872-56440891 | None:intergenic | 40.0% | |
| CCGTCAGTTATTACGGATAA+AGG | + | chr6.3:56441008-56441027 | None:intergenic | 40.0% | |
| CTACTTGTGTGAGGACTAAA+GGG | - | chr6.3:56442071-56442090 | MS.gene79308:intron | 40.0% | |
| CTTTAGTCCTCACACAAGTA+GGG | + | chr6.3:56442072-56442091 | None:intergenic | 40.0% | |
| GAGGGTTTACATAGTCACAT+AGG | - | chr6.3:56441335-56441354 | MS.gene79308:CDS | 40.0% | |
| GCTTCGAAACAATGTCTATG+TGG | + | chr6.3:56440402-56440421 | None:intergenic | 40.0% | |
| GCTTCTGTTGTAGGTTATTG+AGG | - | chr6.3:56439913-56439932 | MS.gene79308:CDS | 40.0% | |
| GGAATGCATCATCGAATGTT+GGG | - | chr6.3:56441105-56441124 | MS.gene79308:intron | 40.0% | |
| GGGAATTATTCAGTTGTCGA+AGG | - | chr6.3:56441889-56441908 | MS.gene79308:CDS | 40.0% | |
| GTTCGAGCAAGATACACAAA+TGG | - | chr6.3:56441827-56441846 | MS.gene79308:CDS | 40.0% | |
| TAGACATTGTTTCGAAGCGT+TGG | - | chr6.3:56440404-56440423 | MS.gene79308:intron | 40.0% | |
| TATGTGCTTGGCATCTTCTA+CGG | - | chr6.3:56441084-56441103 | MS.gene79308:intron | 40.0% | |
| TATTCAGTTGTCGAAGGATG+TGG | - | chr6.3:56441895-56441914 | MS.gene79308:CDS | 40.0% | |
| TCATGGTATGCAAGGGTAAA+CGG | - | chr6.3:56440205-56440224 | MS.gene79308:CDS | 40.0% | |
| TCTGTTGTAGGTTATTGAGG+AGG | - | chr6.3:56439916-56439935 | MS.gene79308:CDS | 40.0% | |
| TGAAGAACTATGGGAAGAGA+TGG | - | chr6.3:56441190-56441209 | MS.gene79308:intron | 40.0% | |
| TGATCCAATTGTTGTCTTGC+AGG | + | chr6.3:56441229-56441248 | None:intergenic | 40.0% | |
| ! | AGCATCGAACCAGTTTACAA+GGG | - | chr6.3:56441511-56441530 | MS.gene79308:CDS | 40.0% |
| ! | CGCAAACTAGTTTGCAATAC+GGG | + | chr6.3:56441476-56441495 | None:intergenic | 40.0% |
| ! | TCAGGTGGTTTTCACAAGTT+AGG | - | chr6.3:56440595-56440614 | MS.gene79308:intron | 40.0% |
| !! | GCAAACTTTTGTTTGTTCGC+GGG | - | chr6.3:56440282-56440301 | MS.gene79308:CDS | 40.0% |
| !! | GGGTAAACGGATTTTCTGTT+CGG | - | chr6.3:56440218-56440237 | MS.gene79308:CDS | 40.0% |
| !! | TTGGTATTGATGCTAGCAGT+GGG | - | chr6.3:56442011-56442030 | MS.gene79308:CDS | 40.0% |
| !!! | AGAGGCTTGAACGTCTTTTT+TGG | - | chr6.3:56440761-56440780 | MS.gene79308:intron | 40.0% |
| !!! | GAACGTCTTTTTTGGTGTGA+TGG | - | chr6.3:56440769-56440788 | MS.gene79308:intron | 40.0% |
| !!! | GAAGGTTTTAGAGAGAACAG+GGG | - | chr6.3:56440304-56440323 | MS.gene79308:CDS | 40.0% |
| !!! | GGAAGGTTTTAGAGAGAACA+GGG | - | chr6.3:56440303-56440322 | MS.gene79308:CDS | 40.0% |
| !!! | TGCCCGTTTGTTATTTTCTC+CGG | - | chr6.3:56440867-56440886 | MS.gene79308:intron | 40.0% |
| AATCCAATTGTTACGCCTGG+TGG | - | chr6.3:56442103-56442122 | MS.gene79308:intron | 45.0% | |
| AATGGGGCTAATGAGTGTGA+TGG | - | chr6.3:56440025-56440044 | MS.gene79308:CDS | 45.0% | |
| AGCGATTCATCCGAGTCTAA+TGG | - | chr6.3:56440064-56440083 | MS.gene79308:CDS | 45.0% | |
| AGTCGTCGACGAAAGTTTAC+TGG | - | chr6.3:56442045-56442064 | MS.gene79308:CDS | 45.0% | |
| ATGCATGTTGGGTGATATGG+AGG | - | chr6.3:56441157-56441176 | MS.gene79308:intron | 45.0% | |
| CAATTCGCGACTGCTATGAA+TGG | - | chr6.3:56440975-56440994 | MS.gene79308:intron | 45.0% | |
| CATTCATAGCAGTCGCGAAT+TGG | + | chr6.3:56440977-56440996 | None:intergenic | 45.0% | |
| CCACACCTGGTATCATTTCT+GGG | + | chr6.3:56440358-56440377 | None:intergenic | 45.0% | |
| CCTACTTGTGTGAGGACTAA+AGG | - | chr6.3:56442070-56442089 | MS.gene79308:intron | 45.0% | |
| CCTCAATCATGTAGTCAGTG+TGG | - | chr6.3:56442136-56442155 | MS.gene79308:intron | 45.0% | |
| CCTTTAGTCCTCACACAAGT+AGG | + | chr6.3:56442073-56442092 | None:intergenic | 45.0% | |
| CGGAATGCATCATCGAATGT+TGG | - | chr6.3:56441104-56441123 | MS.gene79308:intron | 45.0% | |
| GAATGGATGCATGGATGATG+AGG | - | chr6.3:56439818-56439837 | MS.gene79308:CDS | 45.0% | |
| GAGAACCCAGAAATGATACC+AGG | - | chr6.3:56440350-56440369 | MS.gene79308:CDS | 45.0% | |
| GCAATGGCTAATTCATCAGG+TGG | - | chr6.3:56440580-56440599 | MS.gene79308:intron | 45.0% | |
| GCGATTCATCCGAGTCTAAT+GGG | - | chr6.3:56440065-56440084 | MS.gene79308:CDS | 45.0% | |
| GCTGCAGAACATTACCCAAA+CGG | + | chr6.3:56440264-56440283 | None:intergenic | 45.0% | |
| GGTGCAATGGCTAATTCATC+AGG | - | chr6.3:56440577-56440596 | MS.gene79308:intron | 45.0% | |
| TATAACCACGAGCTGTTGGA+TGG | - | chr6.3:56440451-56440470 | MS.gene79308:intron | 45.0% | |
| TCCACACCTGGTATCATTTC+TGG | + | chr6.3:56440359-56440378 | None:intergenic | 45.0% | |
| TGGCCTTTGATGCAACCTAT+AGG | - | chr6.3:56440829-56440848 | MS.gene79308:intron | 45.0% | |
| TGTAGTCAGTGTGGTGTGAT+AGG | - | chr6.3:56442145-56442164 | MS.gene79308:intron | 45.0% | |
| TGTCTTAGGATGGAGTCGTT+TGG | - | chr6.3:56441701-56441720 | MS.gene79308:CDS | 45.0% | |
| TTGGCCTGCAAGACAACAAT+TGG | - | chr6.3:56441222-56441241 | MS.gene79308:intron | 45.0% | |
| ! | CAATACGGGTTGACCATAGT+TGG | + | chr6.3:56441462-56441481 | None:intergenic | 45.0% |
| ! | CAGCATCGAACCAGTTTACA+AGG | - | chr6.3:56441510-56441529 | MS.gene79308:CDS | 45.0% |
| ! | CCACACTGACTACATGATTG+AGG | + | chr6.3:56442139-56442158 | None:intergenic | 45.0% |
| ! | TTTTGCAGAACATCCACACC+TGG | + | chr6.3:56440371-56440390 | None:intergenic | 45.0% |
| !! | ACTGTGGAAATGGAAGTGTC+TGG | - | chr6.3:56441636-56441655 | MS.gene79308:CDS | 45.0% |
| !! | ACTTTTGTTTGTTCGCGGGA+AGG | - | chr6.3:56440286-56440305 | MS.gene79308:CDS | 45.0% |
| !! | CTGTTGGATGGTTTGCTATG+TGG | - | chr6.3:56440463-56440482 | MS.gene79308:intron | 45.0% |
| !! | GGTGTTAGCTTTCTATGTGC+CGG | + | chr6.3:56440496-56440515 | None:intergenic | 45.0% |
| !! | GTTGGTATTGATGCTAGCAG+TGG | - | chr6.3:56442010-56442029 | MS.gene79308:CDS | 45.0% |
| !! | TGGTATTGATGCTAGCAGTG+GGG | - | chr6.3:56442012-56442031 | MS.gene79308:CDS | 45.0% |
| !!! | GGGAAGGTTTTAGAGAGAAC+AGG | - | chr6.3:56440302-56440321 | MS.gene79308:CDS | 45.0% |
| AGAGAACAGGGGATTGACCT+TGG | - | chr6.3:56440315-56440334 | MS.gene79308:CDS | 50.0% | |
| ATGGACGAAGCTTCAGACGA+AGG | - | chr6.3:56439986-56440005 | MS.gene79308:CDS | 50.0% | |
| CAAACGGTCCCTCAGAACTT+GGG | + | chr6.3:56440248-56440267 | None:intergenic | 50.0% | |
| CAGGTATACGAACCACGTCT+CGG | - | chr6.3:56441309-56441328 | MS.gene79308:CDS | 50.0% | |
| CCCAGAAATGATACCAGGTG+TGG | - | chr6.3:56440355-56440374 | MS.gene79308:CDS | 50.0% | |
| CGCGACTGCTATGAATGGTA+AGG | - | chr6.3:56440980-56440999 | MS.gene79308:intron | 50.0% | |
| CTTCCACCAGGCGTAACAAT+TGG | + | chr6.3:56442109-56442128 | None:intergenic | 50.0% | |
| TACTGGACCCTACTTGTGTG+AGG | - | chr6.3:56442062-56442081 | MS.gene79308:intron | 50.0% | |
| TGCGTATAACCACGAGCTGT+TGG | - | chr6.3:56440447-56440466 | MS.gene79308:intron | 50.0% | |
| TGGGCGACTGCTCATATCAA+AGG | - | chr6.3:56441275-56441294 | MS.gene79308:CDS | 50.0% | |
| TGTGTGAGGACTAAAGGGTG+TGG | - | chr6.3:56442076-56442095 | MS.gene79308:intron | 50.0% | |
| TTCGGAAGACCCAAGTTCTG+AGG | - | chr6.3:56440236-56440255 | MS.gene79308:CDS | 50.0% | |
| TTGTTACGCCTGGTGGAAGT+AGG | - | chr6.3:56442110-56442129 | MS.gene79308:intron | 50.0% | |
| ! | TCGGAAGACCCAAGTTCTGA+GGG | - | chr6.3:56440237-56440256 | MS.gene79308:CDS | 50.0% |
| !! | CAAGTTCTGAGGGACCGTTT+GGG | - | chr6.3:56440247-56440266 | MS.gene79308:CDS | 50.0% |
| ACAGGGGATTGACCTTGGAG+AGG | - | chr6.3:56440320-56440339 | MS.gene79308:CDS | 55.0% | |
| ATTGACCTTGGAGAGGCGGA+AGG | - | chr6.3:56440327-56440346 | MS.gene79308:CDS | 55.0% | |
| CCAAACGGTCCCTCAGAACT+TGG | + | chr6.3:56440249-56440268 | None:intergenic | 55.0% | |
| GCAAACCATCCAACAGCTCG+TGG | + | chr6.3:56440459-56440478 | None:intergenic | 55.0% | |
| GTCGAAGGATGTGGCTGAGA+GGG | - | chr6.3:56441904-56441923 | MS.gene79308:CDS | 55.0% | |
| TAAACCCTCACACCGAGACG+TGG | + | chr6.3:56441324-56441343 | None:intergenic | 55.0% | |
| TGTCGAAGGATGTGGCTGAG+AGG | - | chr6.3:56441903-56441922 | MS.gene79308:CDS | 55.0% | |
| TTGACCTTGGAGAGGCGGAA+GGG | - | chr6.3:56440328-56440347 | MS.gene79308:CDS | 55.0% | |
| !! | CCAAGTTCTGAGGGACCGTT+TGG | - | chr6.3:56440246-56440265 | MS.gene79308:CDS | 55.0% |
| GGGGATTGACCTTGGAGAGG+CGG | - | chr6.3:56440323-56440342 | MS.gene79308:CDS | 60.0% | |
| TGAGGACGCCTACTTCCACC+AGG | + | chr6.3:56442121-56442140 | None:intergenic | 60.0% | |
| TTCTCCCTTCCGCCTCTCCA+AGG | + | chr6.3:56440335-56440354 | None:intergenic | 60.0% | |
| ! | ACGAACCACGTCTCGGTGTG+AGG | - | chr6.3:56441316-56441335 | MS.gene79308:CDS | 60.0% |
| ! | CGAACCACGTCTCGGTGTGA+GGG | - | chr6.3:56441317-56441336 | MS.gene79308:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 56439816 | 56442180 | 56439816 | ID=MS.gene79308 |
| chr6.3 | mRNA | 56439816 | 56442180 | 56439816 | ID=MS.gene79308.t1;Parent=MS.gene79308 |
| chr6.3 | exon | 56442154 | 56442180 | 56442154 | ID=MS.gene79308.t1.exon1;Parent=MS.gene79308.t1 |
| chr6.3 | CDS | 56442154 | 56442180 | 56442154 | ID=cds.MS.gene79308.t1;Parent=MS.gene79308.t1 |
| chr6.3 | exon | 56441265 | 56442070 | 56441265 | ID=MS.gene79308.t1.exon2;Parent=MS.gene79308.t1 |
| chr6.3 | CDS | 56441265 | 56442070 | 56441265 | ID=cds.MS.gene79308.t1;Parent=MS.gene79308.t1 |
| chr6.3 | exon | 56439816 | 56440413 | 56439816 | ID=MS.gene79308.t1.exon3;Parent=MS.gene79308.t1 |
| chr6.3 | CDS | 56439816 | 56440413 | 56439816 | ID=cds.MS.gene79308.t1;Parent=MS.gene79308.t1 |
| Gene Sequence |
| Protein sequence |
