AlfalfaGEDB | MS.gene79454

M. sativa cultivar XinJiangDaYe / MS.gene79454

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79454.t1	XP_003630566.1	94.4	266	11	1	1	266	66	327	5.20E-117	430.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79454.t1	Q93W88	76.8	99	23	0	75	173	127	225	7.7e-37	155.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79454.t1	G7LI45	94.4	266	11	1	1	266	66	327	3.7e-117	430.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene79454.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79454.t1	MTR_8g099880	95.113	266	9	1	1	266	66	327	2.30e-166	463
MS.gene79454.t1	MTR_3g498825	60.886	271	89	7	1	266	72	330	8.46e-94	280
MS.gene79454.t1	MTR_7g053410	50.532	188	67	7	22	187	234	417	2.41e-45	159
MS.gene79454.t1	MTR_7g053410	50.532	188	67	7	22	187	234	417	4.46e-45	159
MS.gene79454.t1	MTR_5g037250	54.305	151	59	2	14	155	34	183	1.71e-43	148
MS.gene79454.t1	MTR_1g017350	50.602	166	71	4	12	171	184	344	2.57e-43	152
MS.gene79454.t1	MTR_1g017350	50.602	166	71	4	12	171	184	344	3.17e-43	152
MS.gene79454.t1	MTR_1g017350	50.602	166	71	4	12	171	184	344	3.43e-43	152
MS.gene79454.t1	MTR_1g017350	50.602	166	71	4	12	171	184	344	4.05e-43	152
MS.gene79454.t1	MTR_8g065740	61.719	128	43	2	37	164	263	384	5.72e-42	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79454.t1	AT5G50915	66.406	128	39	1	44	171	100	223	2.48e-55	179
MS.gene79454.t1	AT5G50915	66.406	128	39	1	44	171	100	223	2.48e-55	179
MS.gene79454.t1	AT5G50915	66.406	128	39	1	44	171	100	223	5.48e-55	179
MS.gene79454.t1	AT5G50915	66.406	128	39	1	44	171	100	223	5.48e-55	179
MS.gene79454.t1	AT3G23690	46.018	226	87	7	30	244	132	333	6.52e-47	160
MS.gene79454.t1	AT1G26260	54.658	161	53	5	40	189	117	268	3.67e-46	157
MS.gene79454.t1	AT1G26260	54.658	161	53	5	40	189	146	297	7.50e-46	157
MS.gene79454.t1	AT1G26260	54.658	161	53	5	40	189	168	319	9.85e-46	158
MS.gene79454.t1	AT1G26260	54.658	161	53	5	40	189	168	319	9.85e-46	158
MS.gene79454.t1	AT1G26260	54.658	161	53	5	40	189	168	319	9.85e-46	158

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Find 62 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAGTCATTATTAAC+AGG	0.386747	4.1:+6574209	None:intergenic
AAAAGAAGAGTAGTGGTGAG+GGG	0.607886	4.1:-6575375	MS.gene79454:CDS
AAAGAAGAGTAGTGGTGAGG+GGG	0.586778	4.1:-6575374	MS.gene79454:CDS
AACTGGAAAGGCCCTTGTGT+TGG	0.580713	4.1:-6574675	MS.gene79454:CDS
AACTTGTGCCTGGCTGTGAT+AGG	0.422109	4.1:-6574930	MS.gene79454:CDS
AATATTGAAGAAGTTCCAAC+TGG	0.478486	4.1:-6575304	MS.gene79454:CDS
AATCTTCTTTGACTTTGCAA+TGG	0.497293	4.1:-6574482	MS.gene79454:CDS
AATGGACCTAGACACACTCT+TGG	0.596392	4.1:-6574464	MS.gene79454:CDS
AATTGTGTCAGCAAAAGGTG+TGG	0.745401	4.1:+6574247	None:intergenic
ACAAAAGAAGAGTAGTGGTG+AGG	0.612710	4.1:-6575377	MS.gene79454:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATTGAAGAAGTTCCAAC+TGG	-	chr4.1:6573770-6573789	MS.gene79454:intron	30.0%
ACAATGAGTTATGAACTTTG+AGG	+	chr4.1:6574050-6574069	None:intergenic	30.0%
ATCAACAAGTCTCTACATTA+TGG	-	chr4.1:6575158-6575177	MS.gene79454:intron	30.0%
ATGAATCTTGATATTCAAGG+AGG	+	chr4.1:6575235-6575254	None:intergenic	30.0%
ATTGCAAAGTCAAAGAAGAT+TGG	+	chr4.1:6574593-6574612	None:intergenic	30.0%
CAAAAGCTTCTTAATCCATA+TGG	-	chr4.1:6575587-6575606	MS.gene79454:CDS	30.0%
CATAGTCATTATTAACAGGA+TGG	+	chr4.1:6574864-6574883	None:intergenic	30.0%
CATCAAATTTACCTTAGACA+AGG	+	chr4.1:6573562-6573581	None:intergenic	30.0%
CCTTGAAGAAAAATTGAAGT+TGG	+	chr4.1:6574898-6574917	None:intergenic	30.0%
CTTCTTAATCCATATGGATT+CGG	-	chr4.1:6575593-6575612	MS.gene79454:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	6573456	6575640	6573456	ID=MS.gene79454
chr4.1	mRNA	6573456	6575640	6573456	ID=MS.gene79454.t1;Parent=MS.gene79454
chr4.1	exon	6575527	6575640	6575527	ID=MS.gene79454.t1.exon1;Parent=MS.gene79454.t1
chr4.1	CDS	6575527	6575640	6575527	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6575243	6575428	6575243	ID=MS.gene79454.t1.exon2;Parent=MS.gene79454.t1
chr4.1	CDS	6575243	6575428	6575243	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6574930	6574995	6574930	ID=MS.gene79454.t1.exon3;Parent=MS.gene79454.t1
chr4.1	CDS	6574930	6574995	6574930	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6574631	6574699	6574631	ID=MS.gene79454.t1.exon4;Parent=MS.gene79454.t1
chr4.1	CDS	6574631	6574699	6574631	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6574447	6574536	6574447	ID=MS.gene79454.t1.exon5;Parent=MS.gene79454.t1
chr4.1	CDS	6574447	6574536	6574447	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6574154	6574336	6574154	ID=MS.gene79454.t1.exon6;Parent=MS.gene79454.t1
chr4.1	CDS	6574154	6574336	6574154	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1
chr4.1	exon	6573456	6573548	6573456	ID=MS.gene79454.t1.exon7;Parent=MS.gene79454.t1
chr4.1	CDS	6573456	6573548	6573456	ID=cds.MS.gene79454.t1;Parent=MS.gene79454.t1

Gene Sequence

>MS.gene79454

ATGGTAGTGGACAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGCTGTTACTTCTATGGAGAAGAAAAGAAGAATCAGAAATAAGACTTCTTTGAGTTGCCCCTTGTCTAAGGTAAATTTGATGCAGTTTTTTTTTTTTTTTTACCCTTTTTTGAATATGTTTCTATATTGTTTCACGTTATTGATTTTGTTACTTTGTGGTATTTGTAGGATGTCTCAAAAGAAGGGAGAAGCAAAAAACAAAAGAAGAGTAGTGGTGAGGGGGTGAAAGGAGAGGAGAAGAAAAAAGAAGAGAAGAAGGATCAAAAGAAAAATATTGAAGAAGTTCCAACTGGTTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTATGCAATACAGTTTTTGCCTATGAAGCCCTAACGCAAACACAAACACCGAACACAACACCGACACTTCCATCAGTGTAGTAATTTTAAAAAATTGAATGTAATAACATGTGTCAGTAGTGTGTTGTCAGACAAAAGTGTCGGAGCTACATAGGTTATTACAATTTACAACGGAAAGGGAATTCCTCAATTTCCTCAAAGTTCATAACTCATTGTTAATAAATGTTGCAAAAAAATTGGATTTCAGGTGAGAAGAGAAAAAATAAGTGAAAGAATGAAGATATTGCAGCAACTTGTGCCTGGCTGTGATAGGGTGAGTCTTCATTCCTTTAATATAGATATCGGACATAACATTGATACTGACACATTGACCCTTGTAATAATTTTCATTGAAGAAGTTATTGTATGTATCAATGTTGTATCGGTGTCAGGCACTAACACCTATCTAGTATCGGTCACGCCTTCAATTTGAAATATCGGTTTTAAATAGGTTTACGTAGGCTCTTTTCACAGCCACATTTGATTTGGTTTCATATTAAATAGGTAACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAAAATCAAGTAGAGGTAATGCTGCCAAAAATATAAAAGTTGTACTTTTGAATCATTGATTCATAAACCAACAAGCTTAACTTTATAAACTTCTATATTTCTGATGCAGTTCTTGTCAATGAAACTTGCTTCAGTGAATCCAATCTTCTTTGACTTTGCAATGGACCTAGACACACTCTTGGTTAGACCAGATCATCAGGTGAGGAAATATAACTCAGTAATTAATTTTCATGTACTTGAATTTATATTAGCTGACTCAAACAAATTTATTAATGATGAAATAATGAAACTCTGTTACTGAATTTTCAGAGGTTAAATAGCATAACATCACCATCAACACCAATACCACATGTACCATTGTGCAGCTCCAACCATGCCACACCTTTTGCTGACACAATTACCACAAGCTTCCATCCTGTTAATAATGACTATGTTTTGGATTATCCAACTTCAATTTTTCTTCAAGGGCAGAGGTCAAATACCTTCTTTGAGGTACCTTAGATCATAAGATTTTGATACTATATGATTATAATTGGCTCATGAGATGTCAGGGGATACAATTATGTAATTAGCATACTAGTAAGTTTGAAAATTTTTGTCATTATTTTTCTAAATATAAGTCCAATACGGTGCTTCCCTTTAATAACTTCAACAATTAAATATATGTATACAAGTGACCAAATATCAAAATCGATCTCTTGCACCTTATCAACAAGTCTCTACATTATGGATATTTTGAAATGATCCTTGAAATTGCAAAATGTTAATCAAGTCTATAACACCTCCTTGAATATCAAGATTCATCTTTACGCTTGAATTTGTTATCAAATGGATCTCTGACATTATTCACTTAGTTCAAAATGAACCACTAAAAATAGCAACTCAACATCGTTACAGTCCCTCTAATAACGCAAGGACAAATCTGATTAACATTTTGCAATTTTAGAGGGACTATAACGCTGCTGAGTTGGTACAAACCTGATTAACATTTTGCAATAATTATTAAGTAAAATATCCAATTTAGTCATTTTACCAAAACATAAAGTACTTTGATCATTTCCTTATTATGATGAAAAGCTAGCATATATCATTTTCAGCACACTGATGGACCATTTTGGGACGTAGAAGAGCAACGACAAAAGCTTCTTAATCCATATGGATTCGGCAACAACACATGTTCCTTAAATTAA

Protein sequence

>MS.gene79454.t1

MVVDNLEKGEQVTQKAVTSMEKKRRIRNKTSLSCPLSKDVSKEGRSKKQKKSSGEGVKGEEKKKEEKKDQKKNIEEVPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDRVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPIFFDFAMDLDTLLVRPDHQRLNSITSPSTPIPHVPLCSSNHATPFADTITTSFHPVNNDYVLDYPTSIFLQGQRSNTFFEHTDGPFWDVEEQRQKLLNPYGFGNNTCSLN