Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79570.t1 | AES77465.1 | 85.6 | 486 | 69 | 1 | 1 | 485 | 1 | 486 | 2.00E-228 | 801.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79570.t1 | Q93ZL5 | 42.3 | 381 | 153 | 9 | 123 | 485 | 126 | 457 | 6.5e-58 | 226.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79570.t1 | G7L202 | 85.6 | 486 | 69 | 1 | 1 | 485 | 1 | 486 | 1.5e-228 | 801.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene79570.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79570.t1 | MTR_7g010950 | 91.152 | 486 | 42 | 1 | 1 | 485 | 1 | 486 | 0.0 | 900 |
MS.gene79570.t1 | MTR_6g012450 | 57.515 | 499 | 194 | 9 | 1 | 485 | 1 | 495 | 2.02e-179 | 512 |
MS.gene79570.t1 | MTR_4g082060 | 44.467 | 497 | 228 | 14 | 1 | 483 | 1 | 463 | 2.97e-117 | 352 |
MS.gene79570.t1 | MTR_3g435480 | 41.762 | 522 | 210 | 20 | 1 | 485 | 1 | 465 | 4.64e-96 | 298 |
MS.gene79570.t1 | MTR_5g041530 | 37.247 | 494 | 180 | 15 | 4 | 483 | 2 | 379 | 1.83e-68 | 224 |
MS.gene79570.t1 | MTR_5g041400 | 34.694 | 490 | 180 | 18 | 4 | 483 | 2 | 361 | 1.72e-66 | 218 |
MS.gene79570.t1 | MTR_8g044220 | 34.394 | 503 | 236 | 22 | 3 | 484 | 9 | 438 | 2.90e-65 | 217 |
MS.gene79570.t1 | MTR_5g041380 | 35.113 | 487 | 190 | 20 | 4 | 483 | 2 | 369 | 3.97e-61 | 204 |
MS.gene79570.t1 | MTR_7g086780 | 35.664 | 429 | 201 | 13 | 77 | 484 | 47 | 421 | 2.73e-57 | 196 |
MS.gene79570.t1 | MTR_6g027460 | 37.979 | 287 | 103 | 10 | 2 | 261 | 7 | 245 | 2.20e-43 | 157 |
MS.gene79570.t1 | MTR_6g027450 | 44.262 | 183 | 84 | 4 | 94 | 261 | 48 | 227 | 6.16e-42 | 152 |
MS.gene79570.t1 | MTR_5g041420 | 40.909 | 264 | 110 | 9 | 6 | 246 | 4 | 244 | 6.08e-39 | 144 |
MS.gene79570.t1 | MTR_2g016030 | 83.333 | 60 | 10 | 0 | 129 | 188 | 41 | 100 | 3.98e-33 | 123 |
MS.gene79570.t1 | MTR_8g079060 | 62.857 | 70 | 25 | 1 | 135 | 203 | 29 | 98 | 4.27e-25 | 103 |
MS.gene79570.t1 | MTR_3g091820 | 66.667 | 60 | 20 | 0 | 132 | 191 | 40 | 99 | 1.54e-24 | 103 |
MS.gene79570.t1 | MTR_8g479350 | 75.472 | 53 | 13 | 0 | 137 | 189 | 70 | 122 | 5.29e-24 | 103 |
MS.gene79570.t1 | MTR_8g027295 | 66.102 | 59 | 20 | 0 | 130 | 188 | 19 | 77 | 5.36e-24 | 101 |
MS.gene79570.t1 | MTR_8g015840 | 64.516 | 62 | 22 | 0 | 135 | 196 | 20 | 81 | 5.85e-24 | 100 |
MS.gene79570.t1 | MTR_4g109980 | 71.698 | 53 | 15 | 0 | 133 | 185 | 38 | 90 | 6.35e-24 | 102 |
MS.gene79570.t1 | MTR_2g093220 | 56.098 | 82 | 28 | 1 | 107 | 188 | 20 | 93 | 6.74e-24 | 102 |
MS.gene79570.t1 | MTR_2g059540 | 75.510 | 49 | 12 | 0 | 135 | 183 | 31 | 79 | 1.33e-23 | 99.0 |
MS.gene79570.t1 | MTR_4g088580 | 47.222 | 108 | 41 | 3 | 92 | 188 | 6 | 108 | 1.35e-23 | 102 |
MS.gene79570.t1 | MTR_2g096740 | 59.155 | 71 | 29 | 0 | 137 | 207 | 79 | 149 | 1.37e-23 | 101 |
MS.gene79570.t1 | MTR_2g096740 | 59.155 | 71 | 29 | 0 | 137 | 207 | 64 | 134 | 1.38e-23 | 100 |
MS.gene79570.t1 | MTR_4g022370 | 61.290 | 62 | 24 | 0 | 127 | 188 | 74 | 135 | 1.41e-23 | 102 |
MS.gene79570.t1 | MTR_4g461080 | 66.154 | 65 | 21 | 1 | 124 | 187 | 17 | 81 | 3.93e-23 | 99.4 |
MS.gene79570.t1 | MTR_8g068210 | 52.000 | 75 | 36 | 0 | 114 | 188 | 11 | 85 | 4.13e-23 | 100 |
MS.gene79570.t1 | MTR_7g024670 | 43.689 | 103 | 57 | 1 | 85 | 187 | 28 | 129 | 4.78e-23 | 100 |
MS.gene79570.t1 | MTR_1g056810 | 54.321 | 81 | 34 | 2 | 130 | 207 | 6 | 86 | 1.01e-22 | 98.6 |
MS.gene79570.t1 | MTR_3g090430 | 68.421 | 57 | 17 | 1 | 133 | 188 | 48 | 104 | 1.05e-22 | 99.4 |
MS.gene79570.t1 | MTR_1g077600 | 67.925 | 53 | 17 | 0 | 135 | 187 | 43 | 95 | 1.06e-22 | 97.8 |
MS.gene79570.t1 | MTR_4g063780 | 57.353 | 68 | 29 | 0 | 128 | 195 | 68 | 135 | 1.24e-22 | 99.0 |
MS.gene79570.t1 | MTR_1g077600 | 67.925 | 53 | 17 | 0 | 135 | 187 | 43 | 95 | 1.27e-22 | 98.2 |
MS.gene79570.t1 | MTR_2g013370 | 74.074 | 54 | 13 | 1 | 135 | 188 | 46 | 98 | 7.26e-22 | 95.5 |
MS.gene79570.t1 | MTR_4g089095 | 69.231 | 52 | 16 | 0 | 137 | 188 | 52 | 103 | 9.33e-22 | 95.9 |
MS.gene79570.t1 | MTR_5g031440 | 65.455 | 55 | 19 | 0 | 131 | 185 | 39 | 93 | 1.02e-21 | 96.3 |
MS.gene79570.t1 | MTR_4g089095 | 69.231 | 52 | 16 | 0 | 137 | 188 | 18 | 69 | 1.23e-21 | 94.7 |
MS.gene79570.t1 | MTR_2g014060 | 72.000 | 50 | 14 | 0 | 137 | 186 | 27 | 76 | 1.67e-21 | 95.9 |
MS.gene79570.t1 | MTR_2g014170 | 73.469 | 49 | 13 | 0 | 135 | 183 | 45 | 93 | 2.24e-21 | 95.1 |
MS.gene79570.t1 | MTR_7g059400 | 69.231 | 52 | 16 | 0 | 137 | 188 | 78 | 129 | 2.43e-21 | 95.5 |
MS.gene79570.t1 | MTR_3g077750 | 51.648 | 91 | 43 | 1 | 121 | 210 | 46 | 136 | 2.84e-21 | 95.1 |
MS.gene79570.t1 | MTR_3g118510 | 80.435 | 46 | 5 | 1 | 60 | 105 | 29 | 70 | 1.59e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79570.t1 | AT5G39660 | 41.326 | 513 | 210 | 18 | 6 | 485 | 3 | 457 | 2.23e-94 | 293 |
MS.gene79570.t1 | AT5G39660 | 41.326 | 513 | 210 | 18 | 6 | 485 | 3 | 457 | 2.23e-94 | 293 |
MS.gene79570.t1 | AT5G39660 | 41.326 | 513 | 210 | 18 | 6 | 485 | 3 | 457 | 2.23e-94 | 293 |
MS.gene79570.t1 | AT3G47500 | 43.117 | 494 | 221 | 21 | 1 | 483 | 2 | 446 | 1.45e-90 | 283 |
MS.gene79570.t1 | AT5G62430 | 38.402 | 388 | 116 | 16 | 107 | 483 | 21 | 296 | 1.31e-58 | 196 |
MS.gene79570.t1 | AT1G69570 | 32.673 | 505 | 210 | 21 | 1 | 484 | 1 | 396 | 1.76e-53 | 185 |
MS.gene79570.t1 | AT1G26790 | 31.485 | 505 | 185 | 24 | 1 | 484 | 7 | 371 | 4.18e-41 | 151 |
MS.gene79570.t1 | AT1G29160 | 85.000 | 60 | 9 | 0 | 129 | 188 | 56 | 115 | 5.72e-35 | 129 |
MS.gene79570.t1 | AT2G34140 | 81.667 | 60 | 11 | 0 | 129 | 188 | 52 | 111 | 4.39e-33 | 124 |
MS.gene79570.t1 | AT1G51700 | 63.889 | 72 | 21 | 2 | 135 | 201 | 33 | 104 | 4.11e-25 | 102 |
MS.gene79570.t1 | AT5G60850 | 73.214 | 56 | 15 | 0 | 135 | 190 | 51 | 106 | 6.27e-25 | 105 |
MS.gene79570.t1 | AT5G60200 | 66.129 | 62 | 21 | 0 | 131 | 192 | 51 | 112 | 7.87e-25 | 103 |
MS.gene79570.t1 | AT3G45610 | 42.453 | 106 | 60 | 1 | 100 | 204 | 5 | 110 | 2.19e-24 | 102 |
MS.gene79570.t1 | AT3G55370 | 59.420 | 69 | 28 | 0 | 131 | 199 | 72 | 140 | 2.26e-24 | 103 |
MS.gene79570.t1 | AT3G55370 | 59.420 | 69 | 28 | 0 | 131 | 199 | 72 | 140 | 2.77e-24 | 104 |
MS.gene79570.t1 | AT3G61850 | 60.000 | 70 | 28 | 0 | 123 | 192 | 50 | 119 | 2.77e-24 | 102 |
MS.gene79570.t1 | AT3G61850 | 60.000 | 70 | 28 | 0 | 123 | 192 | 50 | 119 | 2.77e-24 | 102 |
MS.gene79570.t1 | AT3G61850 | 60.000 | 70 | 28 | 0 | 123 | 192 | 62 | 131 | 2.93e-24 | 103 |
MS.gene79570.t1 | AT3G55370 | 59.420 | 69 | 28 | 0 | 131 | 199 | 117 | 185 | 3.26e-24 | 104 |
MS.gene79570.t1 | AT3G61850 | 60.000 | 70 | 28 | 0 | 123 | 192 | 50 | 119 | 4.32e-24 | 102 |
MS.gene79570.t1 | AT3G61850 | 60.000 | 70 | 28 | 0 | 123 | 192 | 62 | 131 | 4.82e-24 | 102 |
MS.gene79570.t1 | AT3G50410 | 70.175 | 57 | 17 | 0 | 135 | 191 | 30 | 86 | 8.63e-24 | 100 |
MS.gene79570.t1 | AT2G28510 | 73.214 | 56 | 15 | 0 | 137 | 192 | 50 | 105 | 1.06e-23 | 101 |
MS.gene79570.t1 | AT3G21270 | 76.471 | 51 | 12 | 0 | 137 | 187 | 31 | 81 | 1.33e-23 | 99.0 |
MS.gene79570.t1 | AT4G24060 | 68.421 | 57 | 18 | 0 | 132 | 188 | 50 | 106 | 1.54e-23 | 102 |
MS.gene79570.t1 | AT5G66940 | 35.955 | 178 | 98 | 6 | 135 | 298 | 32 | 207 | 1.83e-23 | 99.0 |
MS.gene79570.t1 | AT1G07640 | 74.510 | 51 | 13 | 0 | 137 | 187 | 23 | 73 | 4.25e-23 | 99.4 |
MS.gene79570.t1 | AT2G28810 | 62.295 | 61 | 23 | 0 | 126 | 186 | 68 | 128 | 5.02e-23 | 100 |
MS.gene79570.t1 | AT2G37590 | 56.061 | 66 | 29 | 0 | 123 | 188 | 77 | 142 | 6.51e-23 | 99.8 |
MS.gene79570.t1 | AT1G07640 | 74.510 | 51 | 13 | 0 | 137 | 187 | 79 | 129 | 6.93e-23 | 99.8 |
MS.gene79570.t1 | AT2G28810 | 62.295 | 61 | 23 | 0 | 126 | 186 | 85 | 145 | 7.83e-23 | 99.8 |
MS.gene79570.t1 | AT1G07640 | 74.510 | 51 | 13 | 0 | 137 | 187 | 87 | 137 | 8.57e-23 | 99.8 |
MS.gene79570.t1 | AT1G28310 | 72.222 | 54 | 15 | 0 | 135 | 188 | 27 | 80 | 1.25e-22 | 98.6 |
MS.gene79570.t1 | AT1G28310 | 72.222 | 54 | 15 | 0 | 135 | 188 | 51 | 104 | 1.86e-22 | 98.6 |
MS.gene79570.t1 | AT5G65590 | 67.857 | 56 | 18 | 0 | 135 | 190 | 41 | 96 | 2.39e-22 | 97.8 |
MS.gene79570.t1 | AT4G38000 | 64.407 | 59 | 20 | 1 | 134 | 191 | 40 | 98 | 2.55e-22 | 96.3 |
MS.gene79570.t1 | AT1G64620 | 67.308 | 52 | 17 | 0 | 132 | 183 | 46 | 97 | 3.00e-22 | 98.2 |
MS.gene79570.t1 | AT1G21340 | 63.934 | 61 | 20 | 1 | 137 | 195 | 40 | 100 | 4.01e-22 | 96.3 |
MS.gene79570.t1 | AT3G52440 | 47.674 | 86 | 39 | 2 | 109 | 188 | 12 | 97 | 4.16e-22 | 96.3 |
MS.gene79570.t1 | AT3G52440 | 66.667 | 57 | 18 | 1 | 133 | 188 | 22 | 78 | 6.88e-22 | 95.1 |
MS.gene79570.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 135 | 183 | 29 | 77 | 1.32e-21 | 93.2 |
MS.gene79570.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 130 | 188 | 63 | 121 | 1.32e-21 | 95.5 |
MS.gene79570.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 130 | 188 | 63 | 121 | 1.32e-21 | 95.5 |
MS.gene79570.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 130 | 188 | 63 | 121 | 1.32e-21 | 95.5 |
MS.gene79570.t1 | AT5G02460 | 63.793 | 58 | 21 | 0 | 131 | 188 | 91 | 148 | 1.92e-21 | 96.7 |
MS.gene79570.t1 | AT2G46590 | 42.268 | 97 | 55 | 1 | 86 | 182 | 20 | 115 | 3.25e-21 | 95.5 |
MS.gene79570.t1 | AT2G46590 | 42.268 | 97 | 55 | 1 | 86 | 182 | 32 | 127 | 3.92e-21 | 95.5 |
MS.gene79570.t1 | AT4G21050 | 58.209 | 67 | 28 | 0 | 122 | 188 | 11 | 77 | 5.27e-21 | 91.7 |
MS.gene79570.t1 | AT5G62940 | 62.295 | 61 | 22 | 1 | 126 | 185 | 63 | 123 | 3.46e-20 | 92.4 |
MS.gene79570.t1 | AT4G21040 | 62.264 | 53 | 20 | 0 | 137 | 189 | 27 | 79 | 2.56e-18 | 84.3 |
MS.gene79570.t1 | AT4G21080 | 60.377 | 53 | 21 | 0 | 137 | 189 | 27 | 79 | 1.45e-17 | 82.8 |
MS.gene79570.t1 | AT4G21030 | 47.059 | 68 | 34 | 1 | 137 | 204 | 23 | 88 | 1.10e-11 | 64.3 |
Find 115 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTCTATCCTGCAACTTAT+TGG | 0.150210 | 7.3:-87111926 | MS.gene79570:CDS |
CCAACATGAATTTCTGAAAT+AGG | 0.172204 | 7.3:+87114150 | None:intergenic |
ATTCTATCCTGCAACTTATT+GGG | 0.232977 | 7.3:-87111925 | MS.gene79570:CDS |
TCCTCCGAGAAGACTCTTTC+AGG | 0.298613 | 7.3:-87111625 | MS.gene79570:CDS |
GCAAGAACTGCCAGAGATAT+TGG | 0.302290 | 7.3:-87112466 | MS.gene79570:CDS |
GAGAGTTTGTAGTAGAGTTA+TGG | 0.354581 | 7.3:+87111835 | None:intergenic |
AAATGAGTCTCATAATAATA+AGG | 0.358195 | 7.3:-87114070 | MS.gene79570:CDS |
GACTCTGCGATCAAACTGTT+TGG | 0.377035 | 7.3:-87114183 | MS.gene79570:CDS |
CAATGTAGCAACCTCCCTTT+CGG | 0.382427 | 7.3:+87112649 | None:intergenic |
ATCCTCCCCTTGTTCTTCAC+TGG | 0.395303 | 7.3:+87112160 | None:intergenic |
GTGCAAAATTACACAAGAAA+TGG | 0.400392 | 7.3:-87112224 | MS.gene79570:CDS |
TGCACCTTCCGTCGACTTTG+TGG | 0.406190 | 7.3:+87112112 | None:intergenic |
CCTTGTTCTTCACTGGTATG+AGG | 0.408705 | 7.3:+87112167 | None:intergenic |
AGCTCTTTCTGGACAACACT+TGG | 0.410378 | 7.3:-87111675 | MS.gene79570:CDS |
CTCCCTTGAATGTTTACCTA+AGG | 0.416607 | 7.3:+87111809 | None:intergenic |
CTTGAATGTTTACCTAAGGT+TGG | 0.421534 | 7.3:+87111813 | None:intergenic |
AACGGTACAATCCTTACATT+TGG | 0.421611 | 7.3:-87112305 | MS.gene79570:CDS |
TCAGTTCTAGAAGTTGCATC+TGG | 0.425578 | 7.3:+87112695 | None:intergenic |
CAACCTTAGGTAAACATTCA+AGG | 0.427611 | 7.3:-87111812 | MS.gene79570:CDS |
AAGCGACACTTCAGAATTCT+CGG | 0.433945 | 7.3:-87112349 | MS.gene79570:CDS |
TTCAAAGACCGAAGAAGAAC+AGG | 0.434370 | 7.3:-87112621 | MS.gene79570:CDS |
TCGCTTCTGAGACAGTTATC+TGG | 0.434484 | 7.3:+87112366 | None:intergenic |
TGTCTCGTCCTGTTCTTCTT+CGG | 0.435826 | 7.3:+87112613 | None:intergenic |
GTACAACCCCAATAAGTTGC+AGG | 0.438881 | 7.3:+87111918 | None:intergenic |
TCATGAATCCAGAACACAAC+GGG | 0.441078 | 7.3:-87112785 | MS.gene79570:intron |
CCTAGACAATGCCGCCGGAT+TGG | 0.441868 | 7.3:+87111542 | None:intergenic |
GAGTTATGGTTTGCACCATT+CGG | 0.443392 | 7.3:+87111849 | None:intergenic |
TTTCTGCGACCGGCACCTAC+TGG | 0.444047 | 7.3:+87112416 | None:intergenic |
CACCTTGTGGTGGGAAGCTA+TGG | 0.449902 | 7.3:+87112051 | None:intergenic |
TTCAGTCTTGCAAGCCAATC+CGG | 0.451150 | 7.3:-87111556 | MS.gene79570:CDS |
TGTGGTTTCCTAAAACTTTG+AGG | 0.455041 | 7.3:-87111725 | MS.gene79570:CDS |
TTAGCGAAGAAAAGAGTTTG+TGG | 0.459216 | 7.3:-87111743 | MS.gene79570:CDS |
TTCTATCCTGCAACTTATTG+GGG | 0.466905 | 7.3:-87111924 | MS.gene79570:CDS |
CACCGGCAGTCCAATATCTC+TGG | 0.470878 | 7.3:+87112456 | None:intergenic |
AATGCCTGAAAGAGTCTTCT+CGG | 0.474960 | 7.3:+87111621 | None:intergenic |
CTCGTTTGCATCGGATTCCA+TGG | 0.476868 | 7.3:+87111996 | None:intergenic |
GCAGTTCTTGCAGAAATGAC+GGG | 0.478653 | 7.3:+87112478 | None:intergenic |
GATTGTACCGTTGCATTTCA+AGG | 0.479174 | 7.3:+87112316 | None:intergenic |
CAATAAGTTGCAGGATAGAA+TGG | 0.479650 | 7.3:+87111927 | None:intergenic |
GGAAAATCCTGATGGACAAA+AGG | 0.486001 | 7.3:+87111953 | None:intergenic |
CCAATCCGGCGGCATTGTCT+AGG | 0.494145 | 7.3:-87111542 | MS.gene79570:CDS |
GATGGACAAAAGGCCGGTGG+TGG | 0.498700 | 7.3:+87111963 | None:intergenic |
ACTTTCCTCATGGAACTCCT+TGG | 0.498742 | 7.3:-87112025 | MS.gene79570:CDS |
ACTACAAACTCTCCAACCTT+AGG | 0.501563 | 7.3:-87111825 | MS.gene79570:CDS |
GGCAGTTCTTGCAGAAATGA+CGG | 0.505612 | 7.3:+87112477 | None:intergenic |
ATCAGTGAGCTCGTTTGCAT+CGG | 0.516857 | 7.3:+87111987 | None:intergenic |
CGTGGAATGTTCCATGCACT+TGG | 0.517020 | 7.3:+87111891 | None:intergenic |
CCTATTTCAGAAATTCATGT+TGG | 0.517045 | 7.3:-87114150 | MS.gene79570:CDS |
GTGAGTTGGATCCAAATGTA+AGG | 0.517691 | 7.3:+87112294 | None:intergenic |
AGCTTGTTCTTGAGATACAT+TGG | 0.519714 | 7.3:+87112085 | None:intergenic |
TTGTCCTCGTTGTAGTAGCA+TGG | 0.523986 | 7.3:-87112543 | MS.gene79570:CDS |
TGCCAGAGATATTGGACTGC+CGG | 0.524544 | 7.3:-87112458 | MS.gene79570:CDS |
ACCTACTGGTACGTTTCTCA+TGG | 0.524953 | 7.3:+87112430 | None:intergenic |
TACCGTTGCATTTCAAGGAA+GGG | 0.526711 | 7.3:+87112321 | None:intergenic |
TACGTTTCTCATGGTTCCAC+CGG | 0.531107 | 7.3:+87112439 | None:intergenic |
TGAATCACATAAAGGTGAGT+TGG | 0.531921 | 7.3:+87112280 | None:intergenic |
GATGCCACTGAATCACATAA+AGG | 0.533836 | 7.3:+87112272 | None:intergenic |
GTACCGTTGCATTTCAAGGA+AGG | 0.535966 | 7.3:+87112320 | None:intergenic |
TCTTGCAGAAATGACGGGGT+TGG | 0.542522 | 7.3:+87112483 | None:intergenic |
GCTCTTTCTGGACAACACTT+GGG | 0.545826 | 7.3:-87111674 | MS.gene79570:CDS |
TTTGCACCATTCGGTGATGA+TGG | 0.554189 | 7.3:+87111858 | None:intergenic |
CAAGGTGGCTACTTTCCTCA+TGG | 0.567490 | 7.3:-87112035 | MS.gene79570:CDS |
CACCCTTCCTTGAAATGCAA+CGG | 0.569292 | 7.3:-87112323 | MS.gene79570:CDS |
TTGTTCTTGAGATACATTGG+TGG | 0.575585 | 7.3:+87112088 | None:intergenic |
GAACTCCTTGGCATTTACCA+TGG | 0.576696 | 7.3:-87112013 | MS.gene79570:CDS |
CAAGAACAAGCTATGTGGAA+TGG | 0.577149 | 7.3:-87112074 | MS.gene79570:CDS |
AACCTTAGGTAAACATTCAA+GGG | 0.580141 | 7.3:-87111811 | MS.gene79570:CDS |
CTCACCTTTATGTGATTCAG+TGG | 0.580504 | 7.3:-87112276 | MS.gene79570:CDS |
ATTCTTCTGTTGATTGTGCA+AGG | 0.584727 | 7.3:+87112726 | None:intergenic |
AATGGCATGGAAAATCCTGA+TGG | 0.590674 | 7.3:+87111945 | None:intergenic |
TATCTCAAGAACAAGCTATG+TGG | 0.592377 | 7.3:-87112079 | MS.gene79570:CDS |
TGTTACAGTATCCACCGAAA+GGG | 0.593158 | 7.3:-87112663 | MS.gene79570:CDS |
CAAGTGCATGGAACATTCCA+CGG | 0.594597 | 7.3:-87111890 | MS.gene79570:CDS |
CCTCATACCAGTGAAGAACA+AGG | 0.595660 | 7.3:-87112167 | MS.gene79570:CDS |
GGCCATAGCTTCCCACCACA+AGG | 0.598341 | 7.3:-87112053 | MS.gene79570:CDS |
AATCCTGATGGACAAAAGGC+CGG | 0.603585 | 7.3:+87111957 | None:intergenic |
GGAAAGTAGCCACCTTGTGG+TGG | 0.603675 | 7.3:+87112041 | None:intergenic |
GGATCAATCAAATAAATCGT+CGG | 0.604223 | 7.3:-87112141 | MS.gene79570:CDS |
ACCTTCCGTCGACTTTGTGG+AGG | 0.610776 | 7.3:+87112115 | None:intergenic |
GGATTCCATGGTAAATGCCA+AGG | 0.611774 | 7.3:+87112008 | None:intergenic |
CTGTTACAGTATCCACCGAA+AGG | 0.612746 | 7.3:-87112664 | MS.gene79570:CDS |
CTAAAATCAAGCGAAGGAGA+TGG | 0.613491 | 7.3:-87111777 | MS.gene79570:CDS |
TGTAGCAACCTCCCTTTCGG+TGG | 0.614289 | 7.3:+87112652 | None:intergenic |
GAAAGTAGCCACCTTGTGGT+GGG | 0.619044 | 7.3:+87112042 | None:intergenic |
GATGATGGTTGTGCTTGCCG+TGG | 0.621977 | 7.3:+87111873 | None:intergenic |
TTTGAGGATTGATGACTCTG+AGG | 0.623626 | 7.3:-87111709 | MS.gene79570:CDS |
ATGCTACTACAACGAGGACA+AGG | 0.624918 | 7.3:+87112545 | None:intergenic |
AGTTGCAGGATAGAATGGCA+TGG | 0.625575 | 7.3:+87111932 | None:intergenic |
GAGCTCACTGATTCCACCAC+CGG | 0.627819 | 7.3:-87111976 | MS.gene79570:CDS |
CAGTTCTTGCAGAAATGACG+GGG | 0.628674 | 7.3:+87112479 | None:intergenic |
GTTGTACTATGCCAAGTGCA+TGG | 0.629999 | 7.3:-87111902 | MS.gene79570:CDS |
TACCAGTGAAGAACAAGGGG+AGG | 0.634191 | 7.3:-87112162 | MS.gene79570:CDS |
TACAGTATCCACCGAAAGGG+AGG | 0.634842 | 7.3:-87112660 | MS.gene79570:CDS |
ACCTCCACAAAGTCGACGGA+AGG | 0.636006 | 7.3:-87112116 | MS.gene79570:CDS |
AACATGCTAAAATCAAGCGA+AGG | 0.639475 | 7.3:-87111783 | MS.gene79570:CDS |
CTCATACCAGTGAAGAACAA+GGG | 0.644364 | 7.3:-87112166 | MS.gene79570:CDS |
TCATACCAGTGAAGAACAAG+GGG | 0.646136 | 7.3:-87112165 | MS.gene79570:CDS |
TGAGGAAAGTAGCCACCTTG+TGG | 0.648868 | 7.3:+87112038 | None:intergenic |
AGAAACGTACCAGTAGGTGC+CGG | 0.653444 | 7.3:-87112425 | MS.gene79570:CDS |
AGCGACCTAGACAATGCCGC+CGG | 0.655136 | 7.3:+87111537 | None:intergenic |
ACAAGAACAAGAGATTGAGA+AGG | 0.660254 | 7.3:-87114043 | MS.gene79570:intron |
CAGAGATATTGGACTGCCGG+TGG | 0.661022 | 7.3:-87112455 | MS.gene79570:CDS |
CTTAGGTAAACATTCAAGGG+AGG | 0.664142 | 7.3:-87111808 | MS.gene79570:CDS |
GGTTACCTCCACAAAGTCGA+CGG | 0.667234 | 7.3:-87112120 | MS.gene79570:CDS |
GCACAACCATCATCACCGAA+TGG | 0.672816 | 7.3:-87111864 | MS.gene79570:CDS |
ACCATGAGAAACGTACCAGT+AGG | 0.705884 | 7.3:-87112431 | MS.gene79570:CDS |
CCTGATGGACAAAAGGCCGG+TGG | 0.706000 | 7.3:+87111960 | None:intergenic |
TCTTCTCGGAGGAACTGAGT+CGG | 0.710902 | 7.3:+87111635 | None:intergenic |
GGACGAGACAAGTAACACAC+AGG | 0.712817 | 7.3:-87112600 | MS.gene79570:CDS |
CATAGCTTCCCACCACAAGG+TGG | 0.714183 | 7.3:-87112050 | MS.gene79570:CDS |
AGTCTTGCAAGCCAATCCGG+CGG | 0.717524 | 7.3:-87111553 | MS.gene79570:CDS |
GCCTGAAAGAGTCTTCTCGG+AGG | 0.722364 | 7.3:+87111624 | None:intergenic |
AAATGCCAAGGAGTTCCATG+AGG | 0.739950 | 7.3:+87112020 | None:intergenic |
TTCATGAATCCAGAACACAA+CGG | 0.740548 | 7.3:-87112786 | MS.gene79570:intron |
GTGTCCATGCTACTACAACG+AGG | 0.808267 | 7.3:+87112539 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAATTTTGATTTTTTTTTT+TGG | - | chr7.3:87111705-87111724 | MS.gene79570:CDS | 10.0% |
!! | TTAAACTACATAGTATAATT+TGG | + | chr7.3:87111991-87112010 | None:intergenic | 15.0% |
!! | TTTATTTCATATACCAAATA+AGG | + | chr7.3:87112076-87112095 | None:intergenic | 15.0% |
!!! | AATAATTTTTTCACTTTTCA+AGG | - | chr7.3:87111897-87111916 | MS.gene79570:CDS | 15.0% |
!!! | AGTTTTTGAAGTTATATATT+TGG | - | chr7.3:87112010-87112029 | MS.gene79570:CDS | 15.0% |
!!! | TTCTTTTTATGATATTAATG+TGG | - | chr7.3:87112857-87112876 | MS.gene79570:intron | 15.0% |
!! | AAATGAGTCTCATAATAATA+AGG | - | chr7.3:87111643-87111662 | MS.gene79570:CDS | 20.0% |
!! | ATTCTTCCATTTCAAATAAA+GGG | + | chr7.3:87111758-87111777 | None:intergenic | 20.0% |
!! | CATGAATAAATACTAATCTT+TGG | - | chr7.3:87112902-87112921 | MS.gene79570:intron | 20.0% |
!! | GAAATGGAAGAATATTTAAT+GGG | - | chr7.3:87111765-87111784 | MS.gene79570:CDS | 20.0% |
!! | TATTCTTCCATTTCAAATAA+AGG | + | chr7.3:87111759-87111778 | None:intergenic | 20.0% |
!! | TGAAATGGAAGAATATTTAA+TGG | - | chr7.3:87111764-87111783 | MS.gene79570:CDS | 20.0% |
!! | TTTATTGCGAAAAAAACATT+TGG | + | chr7.3:87112725-87112744 | None:intergenic | 20.0% |
!!! | AAATCATGTTAGTTTATGTT+CGG | + | chr7.3:87112368-87112387 | None:intergenic | 20.0% |
! | AACAAACTGATACAAAAACA+AGG | - | chr7.3:87112593-87112612 | MS.gene79570:CDS | 25.0% |
! | ATCGAAAGAATTACCTTATT+TGG | - | chr7.3:87112060-87112079 | MS.gene79570:CDS | 25.0% |
!! | ATTTTGGATTGTTTTCAATC+TGG | - | chr7.3:87111934-87111953 | MS.gene79570:CDS | 25.0% |
!! | TGAAGTTATATATTTGGCTT+TGG | - | chr7.3:87112016-87112035 | MS.gene79570:CDS | 25.0% |
!! | TTATGACCCTTTATTTGAAA+TGG | - | chr7.3:87111749-87111768 | MS.gene79570:CDS | 25.0% |
!! | TTTTGGATTGTTTTCAATCT+GGG | - | chr7.3:87111935-87111954 | MS.gene79570:CDS | 25.0% |
!!! | AAAATTCATTTGACTTGCTT+TGG | - | chr7.3:87111813-87111832 | MS.gene79570:CDS | 25.0% |
!!! | CTTTTTCTTGTTTGACTTTT+GGG | - | chr7.3:87112400-87112419 | MS.gene79570:CDS | 25.0% |
!!! | GGTGAAGTTTTATTTTTTCA+TGG | - | chr7.3:87112037-87112056 | MS.gene79570:CDS | 25.0% |
!!! | TGTTTTTGTATCAGTTTGTT+AGG | + | chr7.3:87112593-87112612 | None:intergenic | 25.0% |
!!! | TTTGACTTTTGGGTTTTATA+TGG | - | chr7.3:87112410-87112429 | MS.gene79570:CDS | 25.0% |
AAAACTGAAATTCGTCAAAG+TGG | + | chr7.3:87112480-87112499 | None:intergenic | 30.0% | |
AACCTTAGGTAAACATTCAA+GGG | - | chr7.3:87113902-87113921 | MS.gene79570:intron | 30.0% | |
ATTCTATCCTGCAACTTATT+GGG | - | chr7.3:87113788-87113807 | MS.gene79570:intron | 30.0% | |
CCTATTTCAGAAATTCATGT+TGG | - | chr7.3:87111563-87111582 | MS.gene79570:CDS | 30.0% | |
GGATCAATCAAATAAATCGT+CGG | - | chr7.3:87113572-87113591 | MS.gene79570:intron | 30.0% | |
GTGCAAAATTACACAAGAAA+TGG | - | chr7.3:87113489-87113508 | MS.gene79570:intron | 30.0% | |
TCGAATAAAAAGAACGAAGA+TGG | - | chr7.3:87112961-87112980 | MS.gene79570:intron | 30.0% | |
TTAGTTTATGTTCGGAATCA+CGG | + | chr7.3:87112360-87112379 | None:intergenic | 30.0% | |
! | GAAGCTATTGAAAGTGATTT+TGG | - | chr7.3:87112241-87112260 | MS.gene79570:CDS | 30.0% |
! | TCATCAATCCTCAAAGTTTT+AGG | + | chr7.3:87113999-87114018 | None:intergenic | 30.0% |
! | TGGAAGAATATTTAATGGGT+TGG | - | chr7.3:87111769-87111788 | MS.gene79570:CDS | 30.0% |
!! | CCAACATGAATTTCTGAAAT+AGG | + | chr7.3:87111566-87111585 | None:intergenic | 30.0% |
!! | GCTTTTTCTTGTTTGACTTT+TGG | - | chr7.3:87112399-87112418 | MS.gene79570:CDS | 30.0% |
!! | GGAGTTTCAATGTTTGATTT+TGG | - | chr7.3:87111918-87111937 | MS.gene79570:CDS | 30.0% |
AAACACCAGACATTAAACCA+AGG | + | chr7.3:87112512-87112531 | None:intergenic | 35.0% | |
AACACCAGACATTAAACCAA+GGG | + | chr7.3:87112511-87112530 | None:intergenic | 35.0% | |
AACATGCTAAAATCAAGCGA+AGG | - | chr7.3:87113930-87113949 | MS.gene79570:intron | 35.0% | |
AACGGTACAATCCTTACATT+TGG | - | chr7.3:87113408-87113427 | MS.gene79570:intron | 35.0% | |
AAGCAGAAAAAAGCTCTTTC+TGG | - | chr7.3:87114027-87114046 | MS.gene79570:intron | 35.0% | |
AATTCCCTTGGTTTAATGTC+TGG | - | chr7.3:87112504-87112523 | MS.gene79570:CDS | 35.0% | |
ACAAGAACAAGAGATTGAGA+AGG | - | chr7.3:87111670-87111689 | MS.gene79570:CDS | 35.0% | |
ACCTTGTTGATGCTAGAATT+AGG | - | chr7.3:87112219-87112238 | MS.gene79570:CDS | 35.0% | |
CAACCTTAGGTAAACATTCA+AGG | - | chr7.3:87113901-87113920 | MS.gene79570:intron | 35.0% | |
CAATAAGTTGCAGGATAGAA+TGG | + | chr7.3:87113789-87113808 | None:intergenic | 35.0% | |
CATTAGCAGTAGACTCAATA+TGG | + | chr7.3:87112635-87112654 | None:intergenic | 35.0% | |
CATTCTATCCTGCAACTTAT+TGG | - | chr7.3:87113787-87113806 | MS.gene79570:intron | 35.0% | |
CTTGAATGTTTACCTAAGGT+TGG | + | chr7.3:87113903-87113922 | None:intergenic | 35.0% | |
GAGAGTTTGTAGTAGAGTTA+TGG | + | chr7.3:87113881-87113900 | None:intergenic | 35.0% | |
GTTAGGAAACATCGAATGAT+AGG | + | chr7.3:87112576-87112595 | None:intergenic | 35.0% | |
TATCTCAAGAACAAGCTATG+TGG | - | chr7.3:87113634-87113653 | MS.gene79570:intron | 35.0% | |
TCCTAATTCTAGCATCAACA+AGG | + | chr7.3:87112223-87112242 | None:intergenic | 35.0% | |
TCGAATGATAGGATCCAATT+TGG | + | chr7.3:87112565-87112584 | None:intergenic | 35.0% | |
TGAATCACATAAAGGTGAGT+TGG | + | chr7.3:87113436-87113455 | None:intergenic | 35.0% | |
TGTGGTTTCCTAAAACTTTG+AGG | - | chr7.3:87113988-87114007 | MS.gene79570:intron | 35.0% | |
TTAATGTCTGGTGTTTGTGT+CGG | - | chr7.3:87112516-87112535 | MS.gene79570:CDS | 35.0% | |
TTAGCGAAGAAAAGAGTTTG+TGG | - | chr7.3:87113970-87113989 | MS.gene79570:intron | 35.0% | |
TTCACGAAATCATGGTAACA+CGG | + | chr7.3:87112332-87112351 | None:intergenic | 35.0% | |
TTCATGAATCCAGAACACAA+CGG | - | chr7.3:87112927-87112946 | MS.gene79570:intron | 35.0% | |
TTCTATCCTGCAACTTATTG+GGG | - | chr7.3:87113789-87113808 | MS.gene79570:intron | 35.0% | |
TTGTTCTTGAGATACATTGG+TGG | + | chr7.3:87113628-87113647 | None:intergenic | 35.0% | |
! | AGCTTGTTCTTGAGATACAT+TGG | + | chr7.3:87113631-87113650 | None:intergenic | 35.0% |
! | ATTCTTCTGTTGATTGTGCA+AGG | + | chr7.3:87112990-87113009 | None:intergenic | 35.0% |
! | CTATTTTGTCCGGTTTTTTG+AGG | + | chr7.3:87113146-87113165 | None:intergenic | 35.0% |
! | TCAGTTTTACTCAATTCCCT+TGG | - | chr7.3:87112492-87112511 | MS.gene79570:CDS | 35.0% |
! | TTTTCTCGTCACACTTTGAA+GGG | + | chr7.3:87114118-87114137 | None:intergenic | 35.0% |
! | TTTTTCTCGTCACACTTTGA+AGG | + | chr7.3:87114119-87114138 | None:intergenic | 35.0% |
AAGAACAGAGCATATGATGC+AGG | + | chr7.3:87112448-87112467 | None:intergenic | 40.0% | |
AAGCGACACTTCAGAATTCT+CGG | - | chr7.3:87113364-87113383 | MS.gene79570:intron | 40.0% | |
AATGCCTGAAAGAGTCTTCT+CGG | + | chr7.3:87114095-87114114 | None:intergenic | 40.0% | |
AATGGCATGGAAAATCCTGA+TGG | + | chr7.3:87113771-87113790 | None:intergenic | 40.0% | |
ACTACAAACTCTCCAACCTT+AGG | - | chr7.3:87113888-87113907 | MS.gene79570:intron | 40.0% | |
ACTCTTGTAACTCTCAGTTC+AGG | - | chr7.3:87112189-87112208 | MS.gene79570:CDS | 40.0% | |
AGAGCATATGATGCAGGAAT+TGG | + | chr7.3:87112442-87112461 | None:intergenic | 40.0% | |
CAAGAACAAGCTATGTGGAA+TGG | - | chr7.3:87113639-87113658 | MS.gene79570:intron | 40.0% | |
CGGTGAATTTCACGAAATCA+TGG | + | chr7.3:87112340-87112359 | None:intergenic | 40.0% | |
CTAAAATCAAGCGAAGGAGA+TGG | - | chr7.3:87113936-87113955 | MS.gene79570:intron | 40.0% | |
CTCACCTTTATGTGATTCAG+TGG | - | chr7.3:87113437-87113456 | MS.gene79570:intron | 40.0% | |
CTCATACCAGTGAAGAACAA+GGG | - | chr7.3:87113547-87113566 | MS.gene79570:intron | 40.0% | |
CTCCCTTGAATGTTTACCTA+AGG | + | chr7.3:87113907-87113926 | None:intergenic | 40.0% | |
CTTAGGTAAACATTCAAGGG+AGG | - | chr7.3:87113905-87113924 | MS.gene79570:intron | 40.0% | |
GAACTGAGAGTTACAAGAGT+TGG | + | chr7.3:87112189-87112208 | None:intergenic | 40.0% | |
GATGCCACTGAATCACATAA+AGG | + | chr7.3:87113444-87113463 | None:intergenic | 40.0% | |
GATTGTACCGTTGCATTTCA+AGG | + | chr7.3:87113400-87113419 | None:intergenic | 40.0% | |
GGATAAGCACCTCAAAAAAC+CGG | - | chr7.3:87113134-87113153 | MS.gene79570:intron | 40.0% | |
GGGGATTAACTCATCCAAAT+TGG | - | chr7.3:87112548-87112567 | MS.gene79570:CDS | 40.0% | |
GTGTGACGAGAAAAATCACT+CGG | - | chr7.3:87114124-87114143 | MS.gene79570:CDS | 40.0% | |
TACCGTTGCATTTCAAGGAA+GGG | + | chr7.3:87113395-87113414 | None:intergenic | 40.0% | |
TAGTAAAAGCCACACTTTCG+AGG | - | chr7.3:87112287-87112306 | MS.gene79570:CDS | 40.0% | |
TCATACCAGTGAAGAACAAG+GGG | - | chr7.3:87113548-87113567 | MS.gene79570:intron | 40.0% | |
TCATGAATCCAGAACACAAC+GGG | - | chr7.3:87112928-87112947 | MS.gene79570:intron | 40.0% | |
TGTTACAGTATCCACCGAAA+GGG | - | chr7.3:87113050-87113069 | MS.gene79570:intron | 40.0% | |
TTCAAAGACCGAAGAAGAAC+AGG | - | chr7.3:87113092-87113111 | MS.gene79570:intron | 40.0% | |
TTTGTTGAACCTCGAAAGTG+TGG | + | chr7.3:87112299-87112318 | None:intergenic | 40.0% | |
! | GAGTTATGGTTTGCACCATT+CGG | + | chr7.3:87113867-87113886 | None:intergenic | 40.0% |
! | GGAAAATCCTGATGGACAAA+AGG | + | chr7.3:87113763-87113782 | None:intergenic | 40.0% |
! | GGACAAGGAACTATTTTGTC+CGG | + | chr7.3:87113156-87113175 | None:intergenic | 40.0% |
! | GTGAGTTGGATCCAAATGTA+AGG | + | chr7.3:87113422-87113441 | None:intergenic | 40.0% |
! | TTTGAGGATTGATGACTCTG+AGG | - | chr7.3:87114004-87114023 | MS.gene79570:intron | 40.0% |
!! | TCAGTTCTAGAAGTTGCATC+TGG | + | chr7.3:87113021-87113040 | None:intergenic | 40.0% |
AAATGCCAAGGAGTTCCATG+AGG | + | chr7.3:87113696-87113715 | None:intergenic | 45.0% | |
ACCATGAGAAACGTACCAGT+AGG | - | chr7.3:87113282-87113301 | MS.gene79570:intron | 45.0% | |
ACCTACTGGTACGTTTCTCA+TGG | + | chr7.3:87113286-87113305 | None:intergenic | 45.0% | |
ACTTTCCTCATGGAACTCCT+TGG | - | chr7.3:87113688-87113707 | MS.gene79570:intron | 45.0% | |
AGCTCTTTCTGGACAACACT+TGG | - | chr7.3:87114038-87114057 | MS.gene79570:intron | 45.0% | |
AGTTGCAGGATAGAATGGCA+TGG | + | chr7.3:87113784-87113803 | None:intergenic | 45.0% | |
ATCAGTGAGCTCGTTTGCAT+CGG | + | chr7.3:87113729-87113748 | None:intergenic | 45.0% | |
ATGCTACTACAACGAGGACA+AGG | + | chr7.3:87113171-87113190 | None:intergenic | 45.0% | |
CAAGTGCATGGAACATTCCA+CGG | - | chr7.3:87113823-87113842 | MS.gene79570:intron | 45.0% | |
CAATGTAGCAACCTCCCTTT+CGG | + | chr7.3:87113067-87113086 | None:intergenic | 45.0% | |
CACCCTTCCTTGAAATGCAA+CGG | - | chr7.3:87113390-87113409 | MS.gene79570:intron | 45.0% | |
CAGTTCTTGCAGAAATGACG+GGG | + | chr7.3:87113237-87113256 | None:intergenic | 45.0% | |
CCTCATACCAGTGAAGAACA+AGG | - | chr7.3:87113546-87113565 | MS.gene79570:intron | 45.0% | |
CCTTGTTCTTCACTGGTATG+AGG | + | chr7.3:87113549-87113568 | None:intergenic | 45.0% | |
CTGTTACAGTATCCACCGAA+AGG | - | chr7.3:87113049-87113068 | MS.gene79570:intron | 45.0% | |
GAACTCCTTGGCATTTACCA+TGG | - | chr7.3:87113700-87113719 | MS.gene79570:intron | 45.0% | |
GACTCTGCGATCAAACTGTT+TGG | - | chr7.3:87111530-87111549 | MS.gene79570:CDS | 45.0% | |
GCAAGAACTGCCAGAGATAT+TGG | - | chr7.3:87113247-87113266 | MS.gene79570:intron | 45.0% | |
GCAGTTCTTGCAGAAATGAC+GGG | + | chr7.3:87113238-87113257 | None:intergenic | 45.0% | |
GCTCTTTCTGGACAACACTT+GGG | - | chr7.3:87114039-87114058 | MS.gene79570:intron | 45.0% | |
GGATTCCATGGTAAATGCCA+AGG | + | chr7.3:87113708-87113727 | None:intergenic | 45.0% | |
GGCAGTTCTTGCAGAAATGA+CGG | + | chr7.3:87113239-87113258 | None:intergenic | 45.0% | |
GTACAACCCCAATAAGTTGC+AGG | + | chr7.3:87113798-87113817 | None:intergenic | 45.0% | |
GTACCGTTGCATTTCAAGGA+AGG | + | chr7.3:87113396-87113415 | None:intergenic | 45.0% | |
GTCTACTGCTAATGCTCTCA+TGG | - | chr7.3:87112641-87112660 | MS.gene79570:CDS | 45.0% | |
GTTGTACTATGCCAAGTGCA+TGG | - | chr7.3:87113811-87113830 | MS.gene79570:intron | 45.0% | |
TACGTTTCTCATGGTTCCAC+CGG | + | chr7.3:87113277-87113296 | None:intergenic | 45.0% | |
TGTCTCGTCCTGTTCTTCTT+CGG | + | chr7.3:87113103-87113122 | None:intergenic | 45.0% | |
TTCAGTCTTGCAAGCCAATC+CGG | - | chr7.3:87114157-87114176 | MS.gene79570:CDS | 45.0% | |
TTGTCCTCGTTGTAGTAGCA+TGG | - | chr7.3:87113170-87113189 | MS.gene79570:intron | 45.0% | |
! | AATCCTGATGGACAAAAGGC+CGG | + | chr7.3:87113759-87113778 | None:intergenic | 45.0% |
! | GTTTGTGTCGGTGCTTCATA+GGG | - | chr7.3:87112528-87112547 | MS.gene79570:CDS | 45.0% |
! | GTTTTTCTCCCGTTGTGTTC+TGG | + | chr7.3:87112939-87112958 | None:intergenic | 45.0% |
! | TGTTTGTGTCGGTGCTTCAT+AGG | - | chr7.3:87112527-87112546 | MS.gene79570:CDS | 45.0% |
! | TTTGCACCATTCGGTGATGA+TGG | + | chr7.3:87113858-87113877 | None:intergenic | 45.0% |
! | TTTGTGTCGGTGCTTCATAG+GGG | - | chr7.3:87112529-87112548 | MS.gene79570:CDS | 45.0% |
!! | TCGCTTCTGAGACAGTTATC+TGG | + | chr7.3:87113350-87113369 | None:intergenic | 45.0% |
!!! | GCTCTTGTTTTTTCTGCGAC+CGG | + | chr7.3:87113310-87113329 | None:intergenic | 45.0% |
AGAAACGTACCAGTAGGTGC+CGG | - | chr7.3:87113288-87113307 | MS.gene79570:intron | 50.0% | |
ATCCTCCCCTTGTTCTTCAC+TGG | + | chr7.3:87113556-87113575 | None:intergenic | 50.0% | |
CGTGGAATGTTCCATGCACT+TGG | + | chr7.3:87113825-87113844 | None:intergenic | 50.0% | |
CTCGTTTGCATCGGATTCCA+TGG | + | chr7.3:87113720-87113739 | None:intergenic | 50.0% | |
GAAAGTAGCCACCTTGTGGT+GGG | + | chr7.3:87113674-87113693 | None:intergenic | 50.0% | |
GCACAACCATCATCACCGAA+TGG | - | chr7.3:87113849-87113868 | MS.gene79570:intron | 50.0% | |
GGACGAGACAAGTAACACAC+AGG | - | chr7.3:87113113-87113132 | MS.gene79570:intron | 50.0% | |
GGTTACCTCCACAAAGTCGA+CGG | - | chr7.3:87113593-87113612 | MS.gene79570:intron | 50.0% | |
GTGTCCATGCTACTACAACG+AGG | + | chr7.3:87113177-87113196 | None:intergenic | 50.0% | |
TACAGTATCCACCGAAAGGG+AGG | - | chr7.3:87113053-87113072 | MS.gene79570:intron | 50.0% | |
TACCAGTGAAGAACAAGGGG+AGG | - | chr7.3:87113551-87113570 | MS.gene79570:intron | 50.0% | |
TCCTCCGAGAAGACTCTTTC+AGG | - | chr7.3:87114088-87114107 | MS.gene79570:CDS | 50.0% | |
TCTTCTCGGAGGAACTGAGT+CGG | + | chr7.3:87114081-87114100 | None:intergenic | 50.0% | |
TGAGGAAAGTAGCCACCTTG+TGG | + | chr7.3:87113678-87113697 | None:intergenic | 50.0% | |
TGCCAGAGATATTGGACTGC+CGG | - | chr7.3:87113255-87113274 | MS.gene79570:intron | 50.0% | |
! | CAAGGTGGCTACTTTCCTCA+TGG | - | chr7.3:87113678-87113697 | MS.gene79570:intron | 50.0% |
! | TCTTGCAGAAATGACGGGGT+TGG | + | chr7.3:87113233-87113252 | None:intergenic | 50.0% |
ACCTCCACAAAGTCGACGGA+AGG | - | chr7.3:87113597-87113616 | MS.gene79570:intron | 55.0% | |
AGTCTTGCAAGCCAATCCGG+CGG | - | chr7.3:87114160-87114179 | MS.gene79570:CDS | 55.0% | |
CACCGGCAGTCCAATATCTC+TGG | + | chr7.3:87113260-87113279 | None:intergenic | 55.0% | |
CAGAGATATTGGACTGCCGG+TGG | - | chr7.3:87113258-87113277 | MS.gene79570:intron | 55.0% | |
CATAGCTTCCCACCACAAGG+TGG | - | chr7.3:87113663-87113682 | MS.gene79570:intron | 55.0% | |
GCCTGAAAGAGTCTTCTCGG+AGG | + | chr7.3:87114092-87114111 | None:intergenic | 55.0% | |
GGAAAGTAGCCACCTTGTGG+TGG | + | chr7.3:87113675-87113694 | None:intergenic | 55.0% | |
TGTAGCAACCTCCCTTTCGG+TGG | + | chr7.3:87113064-87113083 | None:intergenic | 55.0% | |
! | CACCTTGTGGTGGGAAGCTA+TGG | + | chr7.3:87113665-87113684 | None:intergenic | 55.0% |
! | GATGATGGTTGTGCTTGCCG+TGG | + | chr7.3:87113843-87113862 | None:intergenic | 55.0% |
!! | ACCTTCCGTCGACTTTGTGG+AGG | + | chr7.3:87113601-87113620 | None:intergenic | 55.0% |
!! | GAGCTCACTGATTCCACCAC+CGG | - | chr7.3:87113737-87113756 | MS.gene79570:intron | 55.0% |
!! | TGCACCTTCCGTCGACTTTG+TGG | + | chr7.3:87113604-87113623 | None:intergenic | 55.0% |
AGCGACCTAGACAATGCCGC+CGG | + | chr7.3:87114179-87114198 | None:intergenic | 60.0% | |
CCAATCCGGCGGCATTGTCT+AGG | - | chr7.3:87114171-87114190 | MS.gene79570:CDS | 60.0% | |
CCTAGACAATGCCGCCGGAT+TGG | + | chr7.3:87114174-87114193 | None:intergenic | 60.0% | |
GATGGACAAAAGGCCGGTGG+TGG | + | chr7.3:87113753-87113772 | None:intergenic | 60.0% | |
GGCCATAGCTTCCCACCACA+AGG | - | chr7.3:87113660-87113679 | MS.gene79570:intron | 60.0% | |
TTTCTGCGACCGGCACCTAC+TGG | + | chr7.3:87113300-87113319 | None:intergenic | 60.0% | |
! | CCACCGGCCTTTTGTCCATC+AGG | - | chr7.3:87113753-87113772 | MS.gene79570:intron | 60.0% |
! | CCTGATGGACAAAAGGCCGG+TGG | + | chr7.3:87113756-87113775 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 87111515 | 87114220 | 87111515 | ID=MS.gene79570 |
chr7.3 | mRNA | 87111515 | 87114220 | 87111515 | ID=MS.gene79570.t1;Parent=MS.gene79570 |
chr7.3 | exon | 87114044 | 87114220 | 87114044 | ID=MS.gene79570.t1.exon1;Parent=MS.gene79570.t1 |
chr7.3 | CDS | 87114044 | 87114220 | 87114044 | ID=cds.MS.gene79570.t1;Parent=MS.gene79570.t1 |
chr7.3 | exon | 87111515 | 87112795 | 87111515 | ID=MS.gene79570.t1.exon2;Parent=MS.gene79570.t1 |
chr7.3 | CDS | 87111515 | 87112795 | 87111515 | ID=cds.MS.gene79570.t1;Parent=MS.gene79570.t1 |
Gene Sequence |
Protein sequence |