AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79610.t1 MTR_7g010020 96.444 225 8 0 1 225 48 272 2.14e-161 447
MS.gene79610.t1 MTR_6g011610 62.821 234 56 7 1 225 58 269 3.45e-87 259
MS.gene79610.t1 MTR_6g011610 62.069 232 57 7 3 225 41 250 4.17e-85 253
MS.gene79610.t1 MTR_8g468210 55.319 235 85 7 1 224 50 275 6.23e-69 213
MS.gene79610.t1 MTR_5g039000 53.704 216 87 4 19 224 64 276 2.07e-64 201
MS.gene79610.t1 MTR_3g080100 41.584 202 102 5 20 218 8 196 4.19e-34 121
MS.gene79610.t1 MTR_3g080100 41.584 202 102 5 20 218 47 235 1.09e-33 121
MS.gene79610.t1 MTR_5g038280 59.459 111 43 1 18 128 74 182 1.89e-33 122
MS.gene79610.t1 MTR_4g107650 49.630 135 60 2 1 128 57 190 5.74e-32 119
MS.gene79610.t1 MTR_6g007647 58.416 101 41 1 28 128 29 128 3.57e-31 115
MS.gene79610.t1 MTR_6g007647 58.416 101 41 1 28 128 63 162 8.75e-31 115
MS.gene79610.t1 MTR_3g086790 59.794 97 39 0 32 128 59 155 1.78e-30 114
MS.gene79610.t1 MTR_8g089895 41.520 171 80 5 28 186 50 212 2.97e-29 111
MS.gene79610.t1 MTR_7g103340 47.692 130 64 2 20 149 51 176 1.31e-28 107
MS.gene79610.t1 MTR_8g469430 58.333 96 40 0 33 128 89 184 3.72e-27 105
MS.gene79610.t1 MTR_1g061660 50.435 115 42 2 21 127 39 146 3.25e-25 99.0
MS.gene79610.t1 MTR_4g100550 44.800 125 65 1 2 126 89 209 8.65e-24 96.3
MS.gene79610.t1 MTR_3g092150 44.355 124 60 3 36 153 41 161 5.23e-22 90.9
MS.gene79610.t1 MTR_8g026960 49.451 91 39 1 40 123 41 131 2.34e-21 89.0
MS.gene79610.t1 MTR_5g013010 42.537 134 63 3 2 126 97 225 6.01e-20 86.3
MS.gene79610.t1 MTR_7g093430 42.982 114 58 1 14 127 141 247 7.68e-20 85.9
MS.gene79610.t1 MTR_1g054285 45.714 105 50 1 23 127 144 241 1.20e-19 85.5
MS.gene79610.t1 MTR_1g017090 48.958 96 42 1 32 127 129 217 3.85e-19 84.0
MS.gene79610.t1 MTR_4g097600 44.545 110 51 3 18 127 115 214 4.08e-19 83.6
MS.gene79610.t1 MTR_5g014890 47.917 96 43 1 32 127 122 210 4.69e-19 83.6
MS.gene79610.t1 MTR_8g006705 49.474 95 44 1 32 126 145 235 1.20e-18 82.8
MS.gene79610.t1 MTR_2g061030 47.959 98 47 2 32 129 199 292 1.48e-18 83.2
MS.gene79610.t1 MTR_4g126900 44.037 109 55 2 35 137 90 198 3.24e-18 80.1
MS.gene79610.t1 MTR_4g084750 45.263 95 48 1 32 126 64 154 2.18e-16 74.7
MS.gene79610.t1 MTR_5g019680 48.889 90 46 0 33 122 53 142 1.25e-15 73.2
MS.gene79610.t1 MTR_5g019650 54.167 72 33 0 33 104 53 124 9.80e-15 70.9
MS.gene79610.t1 MTR_3g103590 32.911 158 90 3 15 158 123 278 1.76e-14 71.2
MS.gene79610.t1 MTR_5g013010 45.000 80 35 1 14 84 108 187 5.41e-13 65.9
MS.gene79610.t1 MTR_2g038625 43.299 97 51 1 30 126 79 171 9.28e-13 65.5
MS.gene79610.t1 MTR_2g038580 43.299 97 51 1 30 126 79 171 9.28e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79610.t1 AT1G69780 50.000 224 92 7 16 224 69 287 6.21e-60 190
MS.gene79610.t1 AT3G01220 46.818 220 101 7 12 225 65 274 2.69e-53 173
MS.gene79610.t1 AT5G15150 47.737 243 97 8 1 225 69 299 3.73e-53 174
MS.gene79610.t1 AT1G26960 47.887 213 90 7 15 224 54 248 1.24e-52 170
MS.gene79610.t1 AT5G65310 56.897 116 48 1 20 133 57 172 1.78e-33 122
MS.gene79610.t1 AT5G65310 56.897 116 48 1 20 133 39 154 1.85e-33 122
MS.gene79610.t1 AT2G22430 57.732 97 41 0 32 128 61 157 4.94e-31 116
MS.gene79610.t1 AT4G40060 56.701 97 42 0 32 128 58 154 1.01e-30 115
MS.gene79610.t1 AT3G01470 56.701 97 42 0 32 128 67 163 3.67e-30 113
MS.gene79610.t1 AT2G46680 50.549 91 45 0 36 126 35 125 1.95e-24 97.8
MS.gene79610.t1 AT1G27045 40.157 127 76 0 2 128 37 163 2.84e-23 94.0
MS.gene79610.t1 AT1G27045 40.323 124 74 0 2 125 37 160 1.20e-22 92.8
MS.gene79610.t1 AT1G27045 44.545 110 61 0 19 128 11 120 1.42e-22 90.9
MS.gene79610.t1 AT1G27045 44.545 110 61 0 19 128 11 120 1.42e-22 90.9
MS.gene79610.t1 AT1G27045 44.545 110 61 0 19 128 3 112 1.91e-22 90.5
MS.gene79610.t1 AT3G61890 48.889 90 46 0 36 125 33 122 2.57e-22 91.7
MS.gene79610.t1 AT5G03790 47.664 107 54 1 33 137 77 183 4.53e-22 90.9
MS.gene79610.t1 AT2G46680 48.837 86 44 0 36 121 35 120 5.17e-22 91.3
MS.gene79610.t1 AT5G03790 49.485 97 47 1 33 129 77 171 7.71e-21 86.7
MS.gene79610.t1 AT2G36610 45.946 111 45 2 25 127 63 166 1.53e-20 85.5
MS.gene79610.t1 AT4G17460 43.478 115 61 1 12 126 114 224 1.10e-19 85.5
MS.gene79610.t1 AT5G53980 47.872 94 49 0 30 123 8 101 2.33e-19 81.6
MS.gene79610.t1 AT2G18550 42.623 122 62 2 33 153 61 175 3.94e-19 82.8
MS.gene79610.t1 AT5G47370 42.623 122 58 3 12 126 103 219 7.46e-19 83.2
MS.gene79610.t1 AT3G60390 45.536 112 52 3 18 126 146 251 1.24e-18 83.2
MS.gene79610.t1 AT2G01430 44.444 108 56 2 19 126 125 228 1.79e-18 82.0
MS.gene79610.t1 AT5G06710 47.917 96 46 1 32 127 189 280 2.39e-18 82.4
MS.gene79610.t1 AT4G16780 44.545 110 57 1 17 126 113 218 3.04e-18 81.6
MS.gene79610.t1 AT4G37790 45.192 104 50 1 24 127 117 213 4.71e-18 80.9
MS.gene79610.t1 AT2G22800 42.241 116 51 3 12 127 101 200 2.22e-17 79.0
MS.gene79610.t1 AT2G44910 46.316 95 47 1 32 126 162 252 9.84e-17 77.8
MS.gene79610.t1 AT4G36740 42.056 107 57 1 33 134 55 161 5.01e-16 74.3
MS.gene79610.t1 AT4G36740 42.056 107 57 1 33 134 56 162 5.31e-16 74.3
MS.gene79610.t1 AT1G70920 41.818 110 58 2 17 126 55 158 1.04e-15 73.2
MS.gene79610.t1 AT1G70920 41.818 110 58 2 17 126 25 128 1.07e-15 72.4
MS.gene79610.t1 AT5G66700 48.750 80 38 1 19 98 60 136 1.40e-14 70.5
MS.gene79610.t1 AT5G06710 54.717 53 24 0 32 84 189 241 5.98e-12 63.9
MS.gene79610.t1 AT2G01430 48.485 66 34 0 19 84 125 190 7.39e-12 62.8
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 45 125 3.48e-11 62.8
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 45 125 3.48e-11 62.8
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 103 183 3.52e-11 62.8
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 132 212 4.05e-11 62.4
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 103 183 4.38e-11 62.4
MS.gene79610.t1 AT1G79840 39.506 81 49 0 32 112 103 183 4.82e-11 62.0

Find 40 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGAAGAGCTTTGAATT+TGG 0.186029 7.3:+88033575 MS.gene79610:CDS
GTGCAACTTGCTAAGGCTTT+AGG 0.214413 7.3:+88033623 MS.gene79610:CDS
GAAGAAGATCAGGCTGAATT+TGG 0.249178 7.3:+88033538 MS.gene79610:CDS
TGCAACTTGCTAAGGCTTTA+GGG 0.260540 7.3:+88033624 MS.gene79610:CDS
AAGTTGGTAGAAGGCTAATT+AGG 0.295400 7.3:-88035499 None:intergenic
AGAAGTTGGGGTATATTGTT+AGG 0.301981 7.3:-88035530 None:intergenic
TTGAGAAGAGCTTTGAATTT+GGG 0.313267 7.3:+88033576 MS.gene79610:CDS
TGAAAGAAACTGAGGGTTCT+TGG 0.315616 7.3:+88035384 MS.gene79610:CDS
AGCCTAGACAAATTGCTATA+TGG 0.333381 7.3:+88033651 MS.gene79610:CDS
AGCATCAGAACCTATGGCCT+TGG 0.384662 7.3:+88035618 MS.gene79610:CDS
AACCCTCAGTTTCTTTCATT+AGG 0.390455 7.3:-88035379 None:intergenic
GGTTTAATGAAGTTGGTAGA+AGG 0.399111 7.3:-88035508 None:intergenic
TGATGTGAATTGAAGAAGTT+GGG 0.408123 7.3:-88035543 None:intergenic
GCTGAATTTGGATCAAGTTC+AGG 0.410690 7.3:+88033550 MS.gene79610:CDS
GTGGAGAGAAGAAGAAGATC+AGG 0.413666 7.3:+88033528 MS.gene79610:CDS
TTGTTAGGGTTTAATGAAGT+TGG 0.422091 7.3:-88035515 None:intergenic
TCTTCTTCTTCTCTCCACTT+TGG 0.431006 7.3:-88033523 None:intergenic
TTGATGTGAATTGAAGAAGT+TGG 0.458845 7.3:-88035544 None:intergenic
GATGATGATTTATCTGATGA+TGG 0.471832 7.3:+88033497 MS.gene79610:CDS
GAAGTTGGGGTATATTGTTA+GGG 0.501507 7.3:-88035529 None:intergenic
AAGAAAAGTGCAACTTGCTA+AGG 0.504058 7.3:+88033616 MS.gene79610:CDS
GCATCAGAACCTATGGCCTT+GGG 0.512526 7.3:+88035619 MS.gene79610:CDS
GCATCTATGCCCAAGGCCAT+AGG 0.516177 7.3:-88035628 None:intergenic
CAAATTCAAAGCTCTTCTCA+AGG 0.519428 7.3:-88033574 None:intergenic
TTGATGAGCATCAGAACCTA+TGG 0.521506 7.3:+88035612 MS.gene79610:CDS
AGTTCTGATTCTTCACAGAA+TGG 0.525733 7.3:+88035470 MS.gene79610:CDS
GAAGAAATTTGAAGCTGTCA+AGG 0.526329 7.3:+88033736 MS.gene79610:CDS
AAAAGCAAGGATTGGTGTGA+AGG 0.539700 7.3:+88035344 MS.gene79610:CDS
ACTGAGGGTTCTTGGAGCAA+TGG 0.557955 7.3:+88035392 MS.gene79610:CDS
AGCAAGGATTGGTGTGAAGG+TGG 0.575668 7.3:+88035347 MS.gene79610:CDS
AAATTCAAAGCTCTTCTCAA+GGG 0.589863 7.3:-88033573 None:intergenic
AACCATATAGCAATTTGTCT+AGG 0.597887 7.3:-88033653 None:intergenic
TCTGATGATGGATTCCAAAG+TGG 0.607438 7.3:+88033509 MS.gene79610:CDS
TAATCAGAAACTACAAGGAG+AGG 0.617126 7.3:+88033784 MS.gene79610:CDS
GTTCATAATCAGAAACTACA+AGG 0.617357 7.3:+88033779 MS.gene79610:CDS
ATGCCTAATGAAAGAAACTG+AGG 0.620720 7.3:+88035376 MS.gene79610:CDS
AAATGATGCATCTATGCCCA+AGG 0.621741 7.3:-88035635 None:intergenic
CATGATCATCATGAAGTGCA+TGG 0.624861 7.3:+88033473 MS.gene79610:CDS
TGCCTAATGAAAGAAACTGA+GGG 0.635799 7.3:+88035377 MS.gene79610:CDS
GATGTGAATTGAAGAAGTTG+GGG 0.704596 7.3:-88035542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTAAATTTATATTGAAAT+TGG + chr7.3:88034955-88034974 MS.gene79610:intron 10.0%
!!! AATTTTTTGATATATTTCAA+CGG + chr7.3:88034999-88035018 MS.gene79610:intron 10.0%
!!! TTAAATAACAATTTGTTATT+GGG + chr7.3:88034367-88034386 MS.gene79610:intron 10.0%
!!! TTTAAATAACAATTTGTTAT+TGG + chr7.3:88034366-88034385 MS.gene79610:intron 10.0%
!! TAAATTTATATTGAAATTGG+TGG + chr7.3:88034958-88034977 MS.gene79610:intron 15.0%
!! TTATAAGTATCAAAATGTAT+TGG + chr7.3:88034137-88034156 MS.gene79610:intron 15.0%
!! AAGAGACTGATAATATTTAA+AGG + chr7.3:88034889-88034908 MS.gene79610:intron 20.0%
!! AGAGACTGATAATATTTAAA+GGG + chr7.3:88034890-88034909 MS.gene79610:intron 20.0%
!! CATAACTAAAAATGGTAAAA+GGG + chr7.3:88034181-88034200 MS.gene79610:intron 20.0%
!! TTAATGCATTATGATTCTAT+AGG + chr7.3:88034623-88034642 MS.gene79610:intron 20.0%
!!! AATTAGAAAAAAGAGAGTAT+AGG - chr7.3:88033828-88033847 None:intergenic 20.0%
!!! ATTAGAAAAAAGAGAGTATA+GGG - chr7.3:88033827-88033846 None:intergenic 20.0%
!!! ATTAGAGTTATACTCTTTTA+TGG - chr7.3:88034396-88034415 None:intergenic 20.0%
!!! CTTTTACCATTTTTAGTTAT+GGG - chr7.3:88034182-88034201 None:intergenic 20.0%
!!! TTTAAAATATATTCAGTGTC+TGG + chr7.3:88035073-88035092 MS.gene79610:intron 20.0%
!!! TTTCATCTTGATTTGAATAT+AGG + chr7.3:88033954-88033973 MS.gene79610:intron 20.0%
!!! TTTTACCATTTTTAGTTATG+GGG - chr7.3:88034181-88034200 None:intergenic 20.0%
! AACTAATATGCTTTAACACA+TGG + chr7.3:88034841-88034860 MS.gene79610:intron 25.0%
! ACTATTACTTTGATACACAA+AGG - chr7.3:88034255-88034274 None:intergenic 25.0%
! ATAATCCCCATAACTAAAAA+TGG + chr7.3:88034173-88034192 MS.gene79610:intron 25.0%
! ATGTGTTAAAGCATATTAGT+TGG - chr7.3:88034842-88034861 None:intergenic 25.0%
! CAATAATAGTTAATGACACA+TGG - chr7.3:88034024-88034043 None:intergenic 25.0%
! CCATAACTAAAAATGGTAAA+AGG + chr7.3:88034180-88034199 MS.gene79610:intron 25.0%
! GAAAGTTAATATGTGGATAT+TGG - chr7.3:88034671-88034690 None:intergenic 25.0%
! TTGAATGTAACTACATATGT+TGG - chr7.3:88035123-88035142 None:intergenic 25.0%
!! ATTGAATATGAGAGTATGAT+AGG + chr7.3:88034097-88034116 MS.gene79610:intron 25.0%
!! CAAAGTAATAGTGAAGTTTT+AGG + chr7.3:88034263-88034282 MS.gene79610:intron 25.0%
!!! CCTTTTACCATTTTTAGTTA+TGG - chr7.3:88034183-88034202 None:intergenic 25.0%
AAATTCAAAGCTCTTCTCAA+GGG - chr7.3:88033576-88033595 None:intergenic 30.0%
AACCATATAGCAATTTGTCT+AGG - chr7.3:88033656-88033675 None:intergenic 30.0%
AAGCATTAAAAAGCAAGGAT+TGG + chr7.3:88035336-88035355 MS.gene79610:CDS 30.0%
ACTTTCTCTCGATTAATTGT+TGG + chr7.3:88034685-88034704 MS.gene79610:intron 30.0%
ATCGAGAGAAAGTTAATATG+TGG - chr7.3:88034678-88034697 None:intergenic 30.0%
CATGCAAAAACATATCACAA+TGG - chr7.3:88034441-88034460 None:intergenic 30.0%
GATGATGATTTATCTGATGA+TGG + chr7.3:88033497-88033516 MS.gene79610:CDS 30.0%
GTTACAAGCATTAAAAAGCA+AGG + chr7.3:88035331-88035350 MS.gene79610:intron 30.0%
GTTCATAATCAGAAACTACA+AGG + chr7.3:88033779-88033798 MS.gene79610:CDS 30.0%
TCTTCATGTCAATTTCAACA+TGG - chr7.3:88034873-88034892 None:intergenic 30.0%
TGATGTGAATTGAAGAAGTT+GGG - chr7.3:88035546-88035565 None:intergenic 30.0%
TTAAGTCGAAGAAGAATTTG+AGG - chr7.3:88033981-88034000 None:intergenic 30.0%
TTGATGTGAATTGAAGAAGT+TGG - chr7.3:88035547-88035566 None:intergenic 30.0%
TTGTTAGGGTTTAATGAAGT+TGG - chr7.3:88035518-88035537 None:intergenic 30.0%
! AGAGTTATACTCTTTTATGG+TGG - chr7.3:88034393-88034412 None:intergenic 30.0%
! ATGATGATTGAAAGCATGTT+CGG - chr7.3:88035237-88035256 None:intergenic 30.0%
!! TCTCTCTGGAGTAAAATATT+AGG - chr7.3:88034052-88034071 None:intergenic 30.0%
!! TTGAGAAGAGCTTTGAATTT+GGG + chr7.3:88033576-88033595 MS.gene79610:CDS 30.0%
!! TTTTAGGAGCAATTCATAAC+GGG + chr7.3:88034279-88034298 MS.gene79610:intron 30.0%
!!! GTTTTAGGAGCAATTCATAA+CGG + chr7.3:88034278-88034297 MS.gene79610:intron 30.0%
AAATATATTCAGTGTCTGGC+AGG + chr7.3:88035077-88035096 MS.gene79610:intron 35.0%
AACCCTCAGTTTCTTTCATT+AGG - chr7.3:88035382-88035401 None:intergenic 35.0%
AACTGCAATGCAACATCATT+AGG - chr7.3:88035314-88035333 None:intergenic 35.0%
AGAAGTTGGGGTATATTGTT+AGG - chr7.3:88035533-88035552 None:intergenic 35.0%
AGCCTAGACAAATTGCTATA+TGG + chr7.3:88033651-88033670 MS.gene79610:CDS 35.0%
ATGCCTAATGAAAGAAACTG+AGG + chr7.3:88035376-88035395 MS.gene79610:CDS 35.0%
ATGTCTTGTGCTTAGAAACA+TGG - chr7.3:88034806-88034825 None:intergenic 35.0%
CAAATTCAAAGCTCTTCTCA+AGG - chr7.3:88033577-88033596 None:intergenic 35.0%
GAAGTTGGGGTATATTGTTA+GGG - chr7.3:88035532-88035551 None:intergenic 35.0%
GATGTGAATTGAAGAAGTTG+GGG - chr7.3:88035545-88035564 None:intergenic 35.0%
TAATCAGAAACTACAAGGAG+AGG + chr7.3:88033784-88033803 MS.gene79610:CDS 35.0%
TGCCTAATGAAAGAAACTGA+GGG + chr7.3:88035377-88035396 MS.gene79610:CDS 35.0%
TTTAGGAGCAATTCATAACG+GGG + chr7.3:88034280-88034299 MS.gene79610:intron 35.0%
! AGTTCTGATTCTTCACAGAA+TGG + chr7.3:88035470-88035489 MS.gene79610:CDS 35.0%
! CAAGTTGCACTTTTCTTTCT+GGG - chr7.3:88033613-88033632 None:intergenic 35.0%
! GAAGAAATTTGAAGCTGTCA+AGG + chr7.3:88033736-88033755 MS.gene79610:CDS 35.0%
!! AAGAAAAGTGCAACTTGCTA+AGG + chr7.3:88033616-88033635 MS.gene79610:CDS 35.0%
!! AAGTTGGTAGAAGGCTAATT+AGG - chr7.3:88035502-88035521 None:intergenic 35.0%
!! ATACTGACTCTTCACAAGAA+TGG - chr7.3:88034711-88034730 None:intergenic 35.0%
!! CTTGAGAAGAGCTTTGAATT+TGG + chr7.3:88033575-88033594 MS.gene79610:CDS 35.0%
!! GGTTTAATGAAGTTGGTAGA+AGG - chr7.3:88035511-88035530 None:intergenic 35.0%
CATGATCATCATGAAGTGCA+TGG + chr7.3:88033473-88033492 MS.gene79610:CDS 40.0%
GAAACTACAAGGAGAGGTAA+AGG + chr7.3:88033790-88033809 MS.gene79610:intron 40.0%
GAAGAAGATCAGGCTGAATT+TGG + chr7.3:88033538-88033557 MS.gene79610:CDS 40.0%
GCTGAATTTGGATCAAGTTC+AGG + chr7.3:88033550-88033569 MS.gene79610:CDS 40.0%
TCTTCTTCTTCTCTCCACTT+TGG - chr7.3:88033526-88033545 None:intergenic 40.0%
TGAAAGAAACTGAGGGTTCT+TGG + chr7.3:88035384-88035403 MS.gene79610:CDS 40.0%
TTGATGAGCATCAGAACCTA+TGG + chr7.3:88035612-88035631 MS.gene79610:CDS 40.0%
! AAAAGCAAGGATTGGTGTGA+AGG + chr7.3:88035344-88035363 MS.gene79610:CDS 40.0%
! ATTTTGTCGTGTCTGTGCAT+CGG + chr7.3:88035170-88035189 MS.gene79610:intron 40.0%
! GCAAGTTGCACTTTTCTTTC+TGG - chr7.3:88033614-88033633 None:intergenic 40.0%
! GGGAGTAGTGTGCTATTAAT+CGG + chr7.3:88034201-88034220 MS.gene79610:intron 40.0%
! TACATATGTTGGTCTCGTGT+CGG - chr7.3:88035112-88035131 None:intergenic 40.0%
! TTCATAACGGGGAACATGAT+TGG + chr7.3:88034291-88034310 MS.gene79610:intron 40.0%
!! TCTGATGATGGATTCCAAAG+TGG + chr7.3:88033509-88033528 MS.gene79610:CDS 40.0%
!! TGCAACTTGCTAAGGCTTTA+GGG + chr7.3:88033624-88033643 MS.gene79610:CDS 40.0%
CACTTATCTCTCTCTCTCTC+TGG - chr7.3:88034066-88034085 None:intergenic 45.0%
GTCTAACACACTGATGCGTT+AGG - chr7.3:88035213-88035232 None:intergenic 45.0%
GTGGAGAGAAGAAGAAGATC+AGG + chr7.3:88033528-88033547 MS.gene79610:CDS 45.0%
! GTCTGTGCATCGGTACTTAA+AGG + chr7.3:88035180-88035199 MS.gene79610:intron 45.0%
!! GTGCAACTTGCTAAGGCTTT+AGG + chr7.3:88033623-88033642 MS.gene79610:CDS 45.0%
ACTGAGGGTTCTTGGAGCAA+TGG + chr7.3:88035392-88035411 MS.gene79610:CDS 50.0%
AGCATCAGAACCTATGGCCT+TGG + chr7.3:88035618-88035637 MS.gene79610:CDS 50.0%
GCATCAGAACCTATGGCCTT+GGG + chr7.3:88035619-88035638 MS.gene79610:CDS 50.0%
! AGCAAGGATTGGTGTGAAGG+TGG + chr7.3:88035347-88035366 MS.gene79610:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 88033443 88035646 88033443 ID=MS.gene79610
chr7.3 mRNA 88033443 88035646 88033443 ID=MS.gene79610.t1;Parent=MS.gene79610
chr7.3 exon 88033443 88033805 88033443 ID=MS.gene79610.t1.exon1;Parent=MS.gene79610.t1
chr7.3 CDS 88033443 88033805 88033443 ID=cds.MS.gene79610.t1;Parent=MS.gene79610.t1
chr7.3 exon 88035332 88035646 88035332 ID=MS.gene79610.t1.exon2;Parent=MS.gene79610.t1
chr7.3 CDS 88035332 88035646 88035332 ID=cds.MS.gene79610.t1;Parent=MS.gene79610.t1
Gene Sequence

>MS.gene79610

ATGTCATTTTCGGGCATTGAGAACAAATGTCATGATCATCATGAAGTGCATGGAGATGATGATTTATCTGATGATGGATTCCAAAGTGGAGAGAAGAAGAAGATCAGGCTGAATTTGGATCAAGTTCAGGCCCTTGAGAAGAGCTTTGAATTTGGGAACAAGCTTGACCCAGAAAGAAAAGTGCAACTTGCTAAGGCTTTAGGGTTGCAGCCTAGACAAATTGCTATATGGTTTCAGAATAGAAGAGCAAGATGCAAAACAAAGCAACTTGAGAATGAATATGAAGTACTCAAGAAGAAATTTGAAGCTGTCAAGGATGAAAATGATGCACTTAAAGTTCATAATCAGAAACTACAAGGAGAGGTAAAGGAATATTAGTTACCCTATACTCTCTTTTTTCTAATTTAACTGTGCTTTAATAAAAAAAATTGTGTTTCTATCTATTTGATATTTTGAAAGTTCAATGTAATGAAAAATATTAAAGTTAGTTTGTTAGATTAATATTTTAATCTTTCATCTTGATTTGAATATAGGACCTCAAATTCTTCTTCGACTTAAATCAGTTGAGTTATTCAACTCCATGTGTCATTAACTATTATTGTTTTTCCTAATATTTTACTCCAGAGAGAGAGAGAGATAAGTGATTTGAGACATATTGAATATGAGAGTATGATAGGATAAATAAAAATATTTTTTATAAGTATCAAAATGTATTGGTTTTCTTGTGTAAATAATCCCCATAACTAAAAATGGTAAAAGGGAGTAGTGTGCTATTAATCGGATCATCTTGAATTTTGCATACTCTAGTTCCTTTGTGTATCAAAGTAATAGTGAAGTTTTAGGAGCAATTCATAACGGGGAACATGATTGGAGTGATTAAACTAATGTTCATGAATCTTGATCTTGATTCAGATATTCAATATTTTAAATAACAATTTGTTATTGGGCCACCATAAAAGAGTATAACTCTAATTCAATTATTAGTTAGTATTATTCCATTGTGATATGTTTTTGCATGTTGTATTTGTTTCTTTATCTTTTCTTACTCTTGACTTGCTAGTATTCAATTTCTTACATTTTGTGAATACAATGTTTTCTTACTACTGATTGTGTTTTATTTATTTGACTTTATTACATTGTATGAGTTTTGTGTTTTTTTTTATATATATTTTTTTTATATTTAATGCATTATGATTCTATAGGTACTATTGAATTTATAAAGTGACCAATATCCACATATTAACTTTCTCTCGATTAATTGTTGGCCATTCTTGTGAAGAGTCAGTATCATTGTCAGACTCAGATCACATAGCTTCAAATTAATGTTTTTCTTTTTGTAATCAATATATCTGTTTTAGTTCCATGTTTCTAAGCACAAGACATAGTTGCATCAGATCCAACTAATATGCTTTAACACATGGAGAAAACCATGTTGAAATTGACATGAAGAGACTGATAATATTTAAAGGGTTTTTATCATGTGCAAATTTGCACAAGTTAAAAAGTTTAAAATAGTAAATTTATATTGAAATTGGTGGATTTTATATAAATATATAAATTTTTTGATATATTTCAACGGTTTAAAAAATGACAAGAATCGAATGTAAATATGATTTTCAGACACTTCATATTTAAAATATATTCAGTGTCTGGCAGGTGCTTGATACCGACACGAGACCAACATATGTAGTTACATTCAACAATTGCATTTATACAAATTATTATAAATTTTGTCGTGTCTGTGCATCGGTACTTAAAGGAATGTAACCTAACGCATCAGTGTGTTAGACTCCGAACATGCTTTCAATCATCATATAATTTAAACATTAATGTAACTACATATATTTTGTTAGTCTTTTATGTTTTAACCTAATGATGTTGCATTGCAGTTACAAGCATTAAAAAGCAAGGATTGGTGTGAAGGTGGAACAAAATGCCTAATGAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGTGATAATAGCTTAAACATAAATTTAGATCTCTCAAGAACACAAGCTATGAACAGTTCTGATTCTTCACAGAATGGTAGAAACCTAATTAGCCTTCTACCAACTTCATTAAACCCTAACAATATACCCCAACTTCTTCAATTCACATCAAGATCAGATCTTCAAGATGAAAACTTCAGCAACATGTTTCACAACATTGATGAGCATCAGAACCTATGGCCTTGGGCATAG
Protein sequence

>MS.gene79610.t1

MSFSGIENKCHDHHEVHGDDDLSDDGFQSGEKKKIRLNLDQVQALEKSFEFGNKLDPERKVQLAKALGLQPRQIAIWFQNRRARCKTKQLENEYEVLKKKFEAVKDENDALKVHNQKLQGELQALKSKDWCEGGTKCLMKETEGSWSNGSDNSLNINLDLSRTQAMNSSDSSQNGRNLISLLPTSLNPNNIPQLLQFTSRSDLQDENFSNMFHNIDEHQNLWPWA