AlfalfaGEDB | MS.gene79613

M. sativa cultivar XinJiangDaYe / MS.gene79613

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79613.t1	AES77384.1	89	127	14	0	390	516	664	790	1.20E-53	221.1
MS.gene79613.t1	AES77384.1	55.1	89	38	1	1	89	41	127	3.40E-16	96.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79613.t1	Q9LP24	43.9	98	50	2	390	485	1026	1120	2.5e-15	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79613.t1	A0A2Z6M1H9	48.6	518	212	3	1	516	27	492	8.1e-52	214.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79613.t1	MTR_8g047230	47.465	493	148	6	1	389	42	527	1.65e-123	385
MS.gene79613.t1	MTR_8g047230	40.841	333	147	6	66	355	282	607	8.11e-55	199
MS.gene79613.t1	MTR_8g047230	78.906	128	27	0	390	517	870	997	2.75e-53	194
MS.gene79613.t1	MTR_8g047230	33.700	273	92	7	66	251	354	624	1.45e-26	114
MS.gene79613.t1	MTR_0491s0020	53.283	396	158	6	1	388	43	419	4.99e-121	362
MS.gene79613.t1	MTR_7g010000	54.250	400	154	4	1	398	26	398	1.00e-120	375
MS.gene79613.t1	MTR_7g010000	85.156	128	19	0	390	517	741	868	3.03e-64	224
MS.gene79613.t1	MTR_7g010000	34.182	275	99	5	58	250	201	475	2.45e-28	120
MS.gene79613.t1	MTR_7g010000	30.732	205	99	6	42	205	277	479	1.69e-11	67.4
MS.gene79613.t1	MTR_8g047220	51.878	426	168	4	1	389	43	468	2.05e-119	374

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79613.t1	AT1G35710	41.779	371	210	4	20	388	60	426	9.22e-67	234
MS.gene79613.t1	AT1G35710	37.888	322	195	3	61	378	192	512	5.96e-48	179
MS.gene79613.t1	AT1G35710	34.140	372	195	4	64	386	270	640	2.77e-47	177
MS.gene79613.t1	AT1G35710	32.494	397	215	7	42	386	316	711	4.31e-45	171
MS.gene79613.t1	AT1G35710	34.524	336	193	4	78	388	404	737	7.67e-40	155
MS.gene79613.t1	AT1G35710	36.017	236	146	4	72	304	516	749	1.97e-29	123
MS.gene79613.t1	AT1G35710	37.634	186	115	1	69	254	563	747	1.80e-28	120
MS.gene79613.t1	AT1G35710	25.738	474	254	19	60	485	697	1120	5.77e-21	97.4
MS.gene79613.t1	AT4G08850	36.693	387	233	6	20	404	77	453	2.27e-59	212
MS.gene79613.t1	AT4G08850	29.724	434	266	6	76	482	322	743	8.07e-47	176

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Find 113 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGTTATCAGATTTAC+TGG	0.271061	7.3:-88088138	MS.gene79613:CDS
AACGAGGCCGGAAGCATAAT+TGG	0.324716	7.3:-88088243	MS.gene79613:CDS
AAGACACCCTGGCGATATAT+TGG	0.341621	7.3:-88085580	MS.gene79613:CDS
AAGCAGGTAGATCACCTTCA+AGG	0.526102	7.3:+88087758	None:intergenic
AAGTGCGATGTGTATAGCTA+CGG	0.585834	7.3:-88085630	MS.gene79613:CDS
AATTGGAAATGTCCCACCAA+TGG	0.571749	7.3:+88087252	None:intergenic
ACCATCACATTATTTGGAAG+CGG	0.516395	7.3:+88085495	None:intergenic
ACTTTAATGGGAAGACACCC+TGG	0.543450	7.3:-88085591	MS.gene79613:CDS
AGATGTCAAGGTGAACTAAT+TGG	0.270697	7.3:+88087356	None:intergenic
AGCAAAACCATCACATTATT+TGG	0.138253	7.3:+88085489	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGAAATTACAGAGAGAT+TGG	+	chr7.3:88086615-88086634	None:intergenic	30.0%
AAGGCTAAATGTTGTTAAAG+GGG	-	chr7.3:88087272-88087291	MS.gene79613:CDS	30.0%
ACTGAAATTACAGAGAGATT+GGG	+	chr7.3:88086614-88086633	None:intergenic	30.0%
AGCAAAACCATCACATTATT+TGG	+	chr7.3:88088149-88088168	None:intergenic	30.0%
ATAACCGTGAAGTTTCTTTA+AGG	+	chr7.3:88087049-88087068	None:intergenic	30.0%
ATCTATCAATACATGGAGAA+AGG	-	chr7.3:88087192-88087211	MS.gene79613:intron	30.0%
ATCTCTAACAACTACATTCA+AGG	-	chr7.3:88086154-88086173	MS.gene79613:intron	30.0%
ATTTCCCATAATTTACTCCT+TGG	-	chr7.3:88086442-88086461	MS.gene79613:intron	30.0%
CGAAATATTGTGAAGCTTTA+TGG	-	chr7.3:88087138-88087157	MS.gene79613:intron	30.0%
GTAAATTATGGGAAATGTCA+AGG	+	chr7.3:88086438-88086457	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	88085296	88088361	88085296	ID=MS.gene79613
chr7.3	mRNA	88085296	88088361	88085296	ID=MS.gene79613.t1;Parent=MS.gene79613
chr7.3	exon	88087194	88088361	88087194	ID=MS.gene79613.t1.exon1;Parent=MS.gene79613.t1
chr7.3	CDS	88087194	88088361	88087194	ID=cds.MS.gene79613.t1;Parent=MS.gene79613.t1
chr7.3	exon	88085296	88085681	88085296	ID=MS.gene79613.t1.exon2;Parent=MS.gene79613.t1
chr7.3	CDS	88085296	88085681	88085296	ID=cds.MS.gene79613.t1;Parent=MS.gene79613.t1

Gene Sequence

>MS.gene79613

ATGGAAGCAGATGCTATATTGAATAGTGGATGGTGGAATATGTCTCATGAACGCCTCAATGTCTCTGATCGTTGTAGGTGGCACGATATATCATGCAACGAGGCCGGAAGCATAATTGGAATCAACATAGACCCTTTGATGCATCAGGATACAGGGAATGACTTTGCAACACTCAACTTGTCTGCTTTCCACAATTTAGAAAACCTTGTTATCAGATTTACTGGACTACAGGGGACTGTCCCAAAAGAAATTGGTCATCTCTCTAAGCTCACTCATCTTGATTTGTCTCACAATTATCTTAAAGGTACGATACCTCATGAGTTGGGATTCATTAAAAATCTCACTTCATTAGATCTATCTGACAATATAATCAATGGTGAGATTCCTCCTTCACTAGGAAATCTCACCAAACTCACCCATCTTGATTTGTCTAACAATAATCTTGTAGGTGAGGTACCTCCTTCACTTGGAAACCTTACACAATTAAAGCACTTAAACATTTCTATAAACTCCTTTAATGGGAGTTTTCCTACTTCTATCATCGAAATTGAGCTAACTCATCTTGACTTGTCTGTAAATTTCCTTGAAGGTGATCTACCTGCTTCAATAGGAAATCTTAGACAATTAGAGTACCTAGACATTTCATTTAACAACATAATCAAAGGGGAGATACCTCCTTCAATAAAAAATCTCAAAAAATTAGAGTACCTAGACATCTCTTATAATAACATTCAAGGATCCATTCCTCATGAGTTGGGGTTCCTAACAAATCTCACTACATTAATTCTATTTCACAATATGTTGAAAGGTGAGATACCTCCGTCATTAGGAACTTTAAAAAAATTAGTGTACCTAGATATCTCTAACAACTACATTCAAGGAGCCATTCCTCATGAGTTGGGATTCCTGAAAAATCTCACTACATTATATCTATCTCAAAATCGACTGAATAGAAGCATGCCTATTCTCCTTACAAATCTCACCCAATTAGTTCACCTTGACATCTCTGACAATTTTCTTTCTGGTTCCCTCCCATCTAACTTCAACCAATTAACAAAATTGCAAGAGTTGCGGTTAAATAACAACTCCATTGGTGGGACATTTCCAATTTCATTAACAAATCTCTCTCAATTAGACACCCTTGACATTTCCCATAATTTACTCCTTGGTACCCTTCCTTCCAAAATGTTTCCATTATCATATAACAAAACTTCCATTGACCTCAGTCACAACCTCATTAGTGGTGAAATACCTTCTGAACTTGGATACTTTTACAAACTGAATTTAAGCAGTAATAATCTCGCTGGACTGGTTCCCCAATCTCTCTGTAATTTCAGTTCTTTGGACATATCCTACAATTGTTTTATGAGCCCCATTCCAAGCTGTCTTTCGTATACAATAACACCGTCCAAGGAGGGATATTGTCTTGGGTCCCAAATTTCATACAAGAAAAGTAATAATCATAAAGTAAAGAAAGATGTTGTCATTATTCTTCCTGTTCTTATGATTTTGATCTTACCCTTGTCACTTATCATGTGCTTTAAACTTTGGCATAATTATATCAATAACAATCAAGCAAAGAAAACAAAAAAAAAGAATGGGGATTTCTTTTGTATATGGAATTATGATGGACAAATAGCATATGATGACATCATTAGAGCAACAGAAGATTTTGATATTAGATATTGCATTGGGACAGGAGCATATGGAAGTGTTTACAAAGCACGATTACCAAGTGACAAAGTTGTTGCCTTAAAGAAACTTCACGGTTATGAAGCAGAGGTGCCATCTTTTGATGAGAGTTTCAGAAATGAAGTGAGAATATTATCCGAAATAAAACACCGAAATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTATACGATGAAGTTGAAGCCGTGGAATTCAATTGGAGAAAAAGGCTAAATGTTGTTAAAGGGGTTGCATTTGGTCTATCATATCTTCATCATGATTGTACCCCTCCAATAGTGCATAGAGATGTATCTGCTAGCAACATCTTGCTAAACTCTGAGTGGCAGCCTAGTGTTTCTGACTTTGGAACAGCTCGTCTACTTCAGTATGATTCATCCAATCAAACTATAGTTGCTGGAACAATTGGTTATATAGCCCCAGGTAAATAATTCGTTTATTTTATTCTGTCAATTTTTCCATTTATATGATACAAAACATGCATGTTCATAATCTTGCTAAATAACATACATGTTAATTAGTTTTTAACACCTAGAACATAAGATTATAATTTTTCAAAAAAAATCATTAACTTTGTTTCCTAATAGAAGTTTACTTTAGAAAATTTATGTGTCTATATAAAAACGTAATTTCAAATTACTGATTTTTTTTTAAAATGAAATGTACTTTTTTTAAATAAAATCTCACAGTTGGCTATGACAATTTTTTATTTTGTATTGTTTTTCTATTTAAAAGGATATTTAGGCAAATTCCCTTATATTTTTTCTAATATATGTGAAGAAAGAGAGCTTCTAATACAGAAAAGAGTAGTAATTTCAACTACTTTTCTTTGTAATATAAAGGAAAGAGTAGTTGCTTTCAACTATTTTCTTGGGATCCTTTAACCTGCTCATGGTGGTTTGATAAATACAGAGCTTGCCTATACTATGGCTGTGAGTGAAAAGTGCGATGTGTATAGCTACGGAGTAGTGGCACTTGAAACTTTAATGGGAAGACACCCTGGCGATATATTGGCATCACTTCAATTAGCATCAACTCAAGGCATGAAATTATGTGAAGTATTAGATCAACGTCTCCCGCTTCCAAATAATGTGATGGTTTTGCTTGAGATAATCCGTGTTGCCGTAGTAGCATTTGCATGCTTAAATCTCAACCCTCGCTCTCGACCAACAATGAAGTATGTGTCACAGAGTTTTGCCACTGATCTTACACCACTAAGCATTCCTTTGAGTGAAATGTCAGTGCAGCAACTCATGAGTCAAGAACTAAAAGCATTATTTCACATCGGGAACCCTTGA

Protein sequence

>MS.gene79613.t1

MEADAILNSGWWNMSHERLNVSDRCRWHDISCNEAGSIIGINIDPLMHQDTGNDFATLNLSAFHNLENLVIRFTGLQGTVPKEIGHLSKLTHLDLSHNYLKGTIPHELGFIKNLTSLDLSDNIINGEIPPSLGNLTKLTHLDLSNNNLVGEVPPSLGNLTQLKHLNISINSFNGSFPTSIIEIELTHLDLSVNFLEGDLPASIGNLRQLEYLDISFNNIIKGEIPPSIKNLKKLEYLDISYNNIQGSIPHELGFLTNLTTLILFHNMLKGEIPPSLGTLKKLVYLDISNNYIQGAIPHELGFLKNLTTLYLSQNRLNRSMPILLTNLTQLVHLDISDNFLSGSLPSNFNQLTKLQELRLNNNSIGGTFPISLTNLSQLDTLDISHNLLLELAYTMAVSEKCDVYSYGVVALETLMGRHPGDILASLQLASTQGMKLCEVLDQRLPLPNNVMVLLEIIRVAVVAFACLNLNPRSRPTMKYVSQSFATDLTPLSIPLSEMSVQQLMSQELKALFHIGNP