Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79831.t1 | XP_003612158.1 | 85.2 | 243 | 26 | 3 | 1 | 237 | 22 | 260 | 3.40E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79831.t1 | Q6YBV1 | 46.6 | 234 | 92 | 6 | 4 | 227 | 35 | 245 | 1.4e-45 | 184.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79831.t1 | B7UCW4 | 85.2 | 243 | 26 | 3 | 1 | 237 | 22 | 260 | 2.5e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79831.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79831.t1 | MTR_5g021930 | 90.535 | 243 | 13 | 3 | 1 | 237 | 22 | 260 | 8.70e-162 | 449 |
| MS.gene79831.t1 | MTR_4g084550 | 62.687 | 67 | 24 | 1 | 5 | 71 | 60 | 125 | 4.39e-25 | 97.8 |
| MS.gene79831.t1 | MTR_8g107210 | 67.188 | 64 | 20 | 1 | 8 | 71 | 95 | 157 | 5.12e-24 | 98.6 |
| MS.gene79831.t1 | MTR_5g081990 | 58.108 | 74 | 27 | 2 | 9 | 79 | 33 | 105 | 5.92e-24 | 94.7 |
| MS.gene79831.t1 | MTR_4g063735 | 65.079 | 63 | 21 | 1 | 9 | 71 | 25 | 86 | 2.04e-22 | 92.4 |
| MS.gene79831.t1 | MTR_7g060630 | 64.062 | 64 | 22 | 1 | 8 | 71 | 7 | 69 | 2.46e-22 | 91.3 |
| MS.gene79831.t1 | MTR_1g019130 | 60.938 | 64 | 24 | 1 | 8 | 71 | 89 | 151 | 1.97e-21 | 89.4 |
| MS.gene79831.t1 | MTR_1g019130 | 60.938 | 64 | 24 | 1 | 8 | 71 | 89 | 151 | 2.03e-21 | 89.4 |
| MS.gene79831.t1 | MTR_8g095580 | 74.468 | 47 | 12 | 0 | 25 | 71 | 97 | 143 | 3.91e-18 | 79.0 |
| MS.gene79831.t1 | MTR_3g088485 | 72.340 | 47 | 13 | 0 | 25 | 71 | 95 | 141 | 5.62e-18 | 78.6 |
| MS.gene79831.t1 | MTR_7g025010 | 44.118 | 68 | 37 | 1 | 5 | 72 | 43 | 109 | 3.33e-14 | 71.6 |
| MS.gene79831.t1 | MTR_2g015000 | 43.478 | 69 | 38 | 1 | 3 | 71 | 49 | 116 | 8.49e-14 | 70.5 |
| MS.gene79831.t1 | MTR_4g088070 | 43.750 | 64 | 35 | 1 | 7 | 70 | 27 | 89 | 2.35e-13 | 68.9 |
| MS.gene79831.t1 | MTR_7g066060 | 84.848 | 33 | 5 | 0 | 54 | 86 | 465 | 497 | 2.36e-12 | 66.2 |
| MS.gene79831.t1 | MTR_4g088080 | 42.188 | 64 | 36 | 1 | 7 | 70 | 38 | 100 | 1.65e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79831.t1 | AT2G17950 | 40.945 | 254 | 108 | 11 | 4 | 232 | 33 | 269 | 2.35e-46 | 156 |
| MS.gene79831.t1 | AT3G18010 | 67.188 | 64 | 20 | 1 | 8 | 71 | 75 | 137 | 3.84e-24 | 99.0 |
| MS.gene79831.t1 | AT5G59340 | 65.152 | 66 | 22 | 1 | 6 | 71 | 11 | 75 | 6.14e-24 | 96.7 |
| MS.gene79831.t1 | AT5G05770 | 60.870 | 69 | 26 | 1 | 9 | 77 | 29 | 96 | 9.50e-23 | 90.1 |
| MS.gene79831.t1 | AT3G11260 | 63.492 | 63 | 22 | 1 | 9 | 71 | 24 | 85 | 1.04e-22 | 91.7 |
| MS.gene79831.t1 | AT2G28610 | 62.500 | 64 | 23 | 1 | 8 | 71 | 7 | 69 | 1.31e-21 | 90.1 |
| MS.gene79831.t1 | AT1G46480 | 60.938 | 64 | 24 | 1 | 8 | 71 | 89 | 151 | 1.47e-21 | 89.0 |
| MS.gene79831.t1 | AT1G46480 | 60.938 | 64 | 24 | 1 | 8 | 71 | 89 | 151 | 8.74e-21 | 88.2 |
| MS.gene79831.t1 | AT2G01500 | 64.286 | 56 | 19 | 1 | 9 | 64 | 61 | 115 | 4.08e-19 | 84.0 |
| MS.gene79831.t1 | AT5G45980 | 49.231 | 65 | 32 | 1 | 7 | 71 | 53 | 116 | 2.17e-14 | 71.6 |
| MS.gene79831.t1 | AT2G33880 | 44.286 | 70 | 38 | 1 | 3 | 72 | 49 | 117 | 2.26e-14 | 72.0 |
| MS.gene79831.t1 | AT2G33880 | 44.286 | 70 | 38 | 1 | 3 | 72 | 49 | 117 | 2.34e-14 | 72.0 |
Find 44 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 6.3:-50553043 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 6.3:-50553177 | None:intergenic |
| ATGTTCTTCTGCTGATAATA+TGG | 0.223760 | 6.3:+50552123 | MS.gene79831:CDS |
| CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 6.3:+50551901 | MS.gene79831:CDS |
| CTAGAGAAAGACAGAATAAA+AGG | 0.267042 | 6.3:+50551823 | MS.gene79831:CDS |
| TTAGCATAAGCTGAAGAATA+TGG | 0.320661 | 6.3:-50553084 | None:intergenic |
| TCTTCCATGATTTCTTCATT+AGG | 0.332083 | 6.3:-50553126 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 6.3:+50553150 | MS.gene79831:CDS |
| TCACCATGCATAGGGAATAA+AGG | 0.377353 | 6.3:-50553195 | None:intergenic |
| CTCTGAATCTGTTCAACACT+TGG | 0.394597 | 6.3:-50551726 | None:intergenic |
| ATTCTTATCTGATCTGTTGT+TGG | 0.397466 | 6.3:-50551666 | None:intergenic |
| TTTCCATATAGTTACCAATC+TGG | 0.403343 | 6.3:-50552156 | None:intergenic |
| GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 6.3:-50551888 | None:intergenic |
| CACCATGCATAGGGAATAAA+GGG | 0.416329 | 6.3:-50553194 | None:intergenic |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 6.3:+50551753 | MS.gene79831:CDS |
| TGATGTTGTTCATGATGATC+AGG | 0.428226 | 6.3:-50551927 | None:intergenic |
| AGGCCAGATTGGTAACTATA+TGG | 0.432080 | 6.3:+50552153 | MS.gene79831:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 6.3:-50551871 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 6.3:-50551870 | None:intergenic |
| AAGACCTAATGAAGAAATCA+TGG | 0.463541 | 6.3:+50553122 | MS.gene79831:CDS |
| AGTTAGATGAATTTCATTTG+TGG | 0.471728 | 6.3:-50553242 | None:intergenic |
| AAGGATCTTTACTACAACAA+TGG | 0.474991 | 6.3:+50551693 | MS.gene79831:CDS |
| ATGGTTACTGCAGGCCAGAT+TGG | 0.481591 | 6.3:+50552142 | MS.gene79831:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.494244 | 6.3:+50553048 | MS.gene79831:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 6.3:+50551765 | MS.gene79831:CDS |
| GGATGTAGCAGCAGTCAAGT+TGG | 0.519817 | 6.3:+50553015 | MS.gene79831:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 6.3:+50552994 | MS.gene79831:intron |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 6.3:+50553043 | MS.gene79831:CDS |
| GAATGTCTTCACCATGCATA+GGG | 0.538890 | 6.3:-50553203 | None:intergenic |
| CTCCCTTTATTCCCTATGCA+TGG | 0.543247 | 6.3:+50553192 | MS.gene79831:CDS |
| AAAATTGTAATTAGTATGGT+TGG | 0.552762 | 6.3:-50551976 | None:intergenic |
| ATGCATGGTGAAGACATTCA+TGG | 0.571277 | 6.3:+50553207 | MS.gene79831:CDS |
| TGAATGTCTTCACCATGCAT+AGG | 0.574747 | 6.3:-50553204 | None:intergenic |
| GCTGATAATATGGTTACTGC+AGG | 0.581156 | 6.3:+50552133 | MS.gene79831:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 6.3:+50553039 | MS.gene79831:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 6.3:+50551739 | MS.gene79831:CDS |
| GACCAATCCATCCTAAGTGA+GGG | 0.618647 | 6.3:-50553050 | None:intergenic |
| TGACCAATCCATCCTAAGTG+AGG | 0.637357 | 6.3:-50553051 | None:intergenic |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 6.3:-50553191 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 6.3:-50553190 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 6.3:+50553138 | MS.gene79831:CDS |
| GCAGCAGACAAAGTAGAACA+AGG | 0.695509 | 6.3:+50551637 | MS.gene79831:CDS |
| GCAGACAAAGTAGAACAAGG+TGG | 0.752615 | 6.3:+50551640 | MS.gene79831:CDS |
| CATGGTGAAGACATTCATGG+TGG | 0.793972 | 6.3:+50553210 | MS.gene79831:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGAAAAAAAAAAATTAAAA+TGG | - | chr6.3:50552968-50552987 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAGTAACAAAT+TGG | + | chr6.3:50552033-50552052 | MS.gene79831:intron | 15.0% |
| !! | AAGTAATATAATATATTGAG+TGG | + | chr6.3:50552798-50552817 | MS.gene79831:intron | 15.0% |
| !! | AGTAATATAATATATTGAGT+GGG | + | chr6.3:50552799-50552818 | MS.gene79831:intron | 15.0% |
| !! | ATGAAAAATTGTAATTAGTA+TGG | - | chr6.3:50551983-50552002 | None:intergenic | 15.0% |
| !! | ATTTAGAAATTGTAGTATAA+TGG | + | chr6.3:50552754-50552773 | MS.gene79831:intron | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | + | chr6.3:50552891-50552910 | MS.gene79831:intron | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | + | chr6.3:50552338-50552357 | MS.gene79831:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | - | chr6.3:50552398-50552417 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCCTTATTCTT+AGG | + | chr6.3:50552975-50552994 | MS.gene79831:intron | 15.0% |
| !! | AAAATTGTAATTAGTATGGT+TGG | - | chr6.3:50551979-50551998 | None:intergenic | 20.0% |
| !! | ACATACACAAGAATTAATAT+AGG | - | chr6.3:50552079-50552098 | None:intergenic | 20.0% |
| !! | ATTCTTGTGTATGTTTATTT+AGG | + | chr6.3:50552085-50552104 | MS.gene79831:intron | 20.0% |
| !! | GTAATATAATATATTGAGTG+GGG | + | chr6.3:50552800-50552819 | MS.gene79831:intron | 20.0% |
| !! | TTCTTGTGTATGTTTATTTA+GGG | + | chr6.3:50552086-50552105 | MS.gene79831:intron | 20.0% |
| !!! | TTTTTTTTCTTGTCTCAAAA+AGG | - | chr6.3:50552024-50552043 | None:intergenic | 20.0% |
| ! | GAAATTACCATTTCAACTAT+TGG | + | chr6.3:50552676-50552695 | MS.gene79831:intron | 25.0% |
| ! | TTCTTATTATGGAAATTGTC+TGG | - | chr6.3:50552369-50552388 | None:intergenic | 25.0% |
| ! | TTTCTATATCAAATCTCACA+TGG | - | chr6.3:50552289-50552308 | None:intergenic | 25.0% |
| !! | AATTACAATTTTTCATCTGC+TGG | + | chr6.3:50551987-50552006 | MS.gene79831:CDS | 25.0% |
| !! | ACTATATGGAAAAGAGTTTT+AGG | + | chr6.3:50552167-50552186 | MS.gene79831:CDS | 25.0% |
| !! | AGATCAGATAAGAATTTTGA+AGG | + | chr6.3:50551674-50551693 | MS.gene79831:CDS | 25.0% |
| !! | CTATATGGAAAAGAGTTTTA+GGG | + | chr6.3:50552168-50552187 | MS.gene79831:CDS | 25.0% |
| !! | GCAATAATAGTATTGTTGTT+TGG | - | chr6.3:50551891-50551910 | None:intergenic | 25.0% |
| !!! | CTTTTGAAAAAAGCTTAACA+AGG | - | chr6.3:50552630-50552649 | None:intergenic | 25.0% |
| AAGACCTAATGAAGAAATCA+TGG | + | chr6.3:50553122-50553141 | MS.gene79831:CDS | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | + | chr6.3:50551693-50551712 | MS.gene79831:CDS | 30.0% | |
| ATATCCTCCAATAGTTGAAA+TGG | - | chr6.3:50552686-50552705 | None:intergenic | 30.0% | |
| ATATTTGGCATAACATATGG+TGG | + | chr6.3:50552560-50552579 | MS.gene79831:intron | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | + | chr6.3:50553138-50553157 | MS.gene79831:CDS | 30.0% | |
| ATGTTCTTCTGCTGATAATA+TGG | + | chr6.3:50552123-50552142 | MS.gene79831:CDS | 30.0% | |
| ATTACCATTTCAACTATTGG+AGG | + | chr6.3:50552679-50552698 | MS.gene79831:intron | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | - | chr6.3:50551669-50551688 | None:intergenic | 30.0% | |
| CTAGAGAAAGACAGAATAAA+AGG | + | chr6.3:50551823-50551842 | MS.gene79831:CDS | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | + | chr6.3:50553150-50553169 | MS.gene79831:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+AGG | - | chr6.3:50553129-50553148 | None:intergenic | 30.0% | |
| TGAGGTTGTTCTTCTTATTA+TGG | - | chr6.3:50552380-50552399 | None:intergenic | 30.0% | |
| TGGATATTTGGCATAACATA+TGG | + | chr6.3:50552557-50552576 | MS.gene79831:intron | 30.0% | |
| TTAGCATAAGCTGAAGAATA+TGG | - | chr6.3:50553087-50553106 | None:intergenic | 30.0% | |
| TTTCCATATAGTTACCAATC+TGG | - | chr6.3:50552159-50552178 | None:intergenic | 30.0% | |
| ! | AAGGCAAAAATGTCTTTTAC+TGG | + | chr6.3:50551784-50551803 | MS.gene79831:CDS | 30.0% |
| ! | ACTCATATTGGTAGCATAAA+TGG | - | chr6.3:50552827-50552846 | None:intergenic | 30.0% |
| ! | ACTCATCCAAAACTCTAAAA+TGG | - | chr6.3:50552725-50552744 | None:intergenic | 30.0% |
| ! | GCTCATAAGAGCATAAATAT+CGG | + | chr6.3:50552492-50552511 | MS.gene79831:intron | 30.0% |
| !! | ATGAAAACTATGATGGATCA+TGG | - | chr6.3:50552262-50552281 | None:intergenic | 30.0% |
| !! | CTCATCCAAAACTCTAAAAT+GGG | - | chr6.3:50552724-50552743 | None:intergenic | 30.0% |
| !!! | ATACGTGTAGCATTTTTTGT+CGG | + | chr6.3:50552527-50552546 | MS.gene79831:intron | 30.0% |
| !!! | ATTTTAGAGTTTTGGATGAG+TGG | + | chr6.3:50552724-50552743 | MS.gene79831:intron | 30.0% |
| AGACAGTATGGTAAGATTGA+AGG | + | chr6.3:50551765-50551784 | MS.gene79831:CDS | 35.0% | |
| ATTGTGCACTCCTAAGAATA+AGG | - | chr6.3:50552988-50553007 | None:intergenic | 35.0% | |
| CTATTATTGCTGCTGCTAAT+TGG | + | chr6.3:50551901-50551920 | MS.gene79831:CDS | 35.0% | |
| GGAGGATATTATGAATGAGT+GGG | + | chr6.3:50552697-50552716 | MS.gene79831:intron | 35.0% | |
| TAGTGAAACTGAACTCTTGT+TGG | - | chr6.3:50552467-50552486 | None:intergenic | 35.0% | |
| TGATGTTGTTCATGATGATC+AGG | - | chr6.3:50551930-50551949 | None:intergenic | 35.0% | |
| TGGAGGATATTATGAATGAG+TGG | + | chr6.3:50552696-50552715 | MS.gene79831:intron | 35.0% | |
| TGGATGCATGAAAACTATGA+TGG | - | chr6.3:50552269-50552288 | None:intergenic | 35.0% | |
| TGGATTGAATGCATTGCAAA+GGG | - | chr6.3:50552242-50552261 | None:intergenic | 35.0% | |
| ! | AATTGTCTGGATTGTCCTTT+TGG | - | chr6.3:50552356-50552375 | None:intergenic | 35.0% |
| ! | ATGGATTGAATGCATTGCAA+AGG | - | chr6.3:50552243-50552262 | None:intergenic | 35.0% |
| ! | TTTTACTACGTTCCCAAGTT+TGG | + | chr6.3:50552588-50552607 | MS.gene79831:intron | 35.0% |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | - | chr6.3:50551873-50551892 | None:intergenic | 35.0% |
| AAAGGGAGGGTTTCAATTTC+AGG | - | chr6.3:50553180-50553199 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | + | chr6.3:50551739-50551758 | MS.gene79831:CDS | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | + | chr6.3:50553039-50553058 | MS.gene79831:CDS | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | - | chr6.3:50553193-50553212 | None:intergenic | 40.0% | |
| ATGCATGGTGAAGACATTCA+TGG | + | chr6.3:50553207-50553226 | MS.gene79831:CDS | 40.0% | |
| CAATATGAGTGACATGGATG+TGG | + | chr6.3:50552837-50552856 | MS.gene79831:intron | 40.0% | |
| CACATCCATGTCACTCATAT+TGG | - | chr6.3:50552839-50552858 | None:intergenic | 40.0% | |
| CACCATGCATAGGGAATAAA+GGG | - | chr6.3:50553197-50553216 | None:intergenic | 40.0% | |
| CTCTGAATCTGTTCAACACT+TGG | - | chr6.3:50551729-50551748 | None:intergenic | 40.0% | |
| GAATGTCTTCACCATGCATA+GGG | - | chr6.3:50553206-50553225 | None:intergenic | 40.0% | |
| GCTGATAATATGGTTACTGC+AGG | + | chr6.3:50552133-50552152 | MS.gene79831:CDS | 40.0% | |
| TCACCATGCATAGGGAATAA+AGG | - | chr6.3:50553198-50553217 | None:intergenic | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | + | chr6.3:50551753-50551772 | MS.gene79831:CDS | 40.0% | |
| TGAAACTGAACTCTTGTTGG+TGG | - | chr6.3:50552464-50552483 | None:intergenic | 40.0% | |
| TGAATGTCTTCACCATGCAT+AGG | - | chr6.3:50553207-50553226 | None:intergenic | 40.0% | |
| TGCTACCAATATGAGTGACA+TGG | + | chr6.3:50552831-50552850 | MS.gene79831:intron | 40.0% | |
| ! | AAGAGCATAAATATCGGCAG+TGG | + | chr6.3:50552498-50552517 | MS.gene79831:intron | 40.0% |
| ! | AGGCCAGATTGGTAACTATA+TGG | + | chr6.3:50552153-50552172 | MS.gene79831:CDS | 40.0% |
| !! | CTTGTTGGTGGATTCAATAC+AGG | - | chr6.3:50552452-50552471 | None:intergenic | 40.0% |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | - | chr6.3:50551874-50551893 | None:intergenic | 40.0% |
| !!! | AGAGTTTTGGATGAGTGGTA+TGG | + | chr6.3:50552729-50552748 | MS.gene79831:intron | 40.0% |
| !!! | CATTTTTTGTCGGAAGGTCA+TGG | + | chr6.3:50552537-50552556 | MS.gene79831:intron | 40.0% |
| !!! | GTGTAGCATTTTTTGTCGGA+AGG | + | chr6.3:50552531-50552550 | MS.gene79831:intron | 40.0% |
| !!! | TGGGACCCATTTTAGAGTTT+TGG | + | chr6.3:50552716-50552735 | MS.gene79831:intron | 40.0% |
| AACCCTCACTTAGGATGGAT+TGG | + | chr6.3:50553048-50553067 | MS.gene79831:CDS | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | - | chr6.3:50553194-50553213 | None:intergenic | 45.0% | |
| CATGGTGAAGACATTCATGG+TGG | + | chr6.3:50553210-50553229 | MS.gene79831:CDS | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | + | chr6.3:50553043-50553062 | MS.gene79831:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | - | chr6.3:50553046-50553065 | None:intergenic | 45.0% | |
| CTCCCTTTATTCCCTATGCA+TGG | + | chr6.3:50553192-50553211 | MS.gene79831:CDS | 45.0% | |
| GACCAATCCATCCTAAGTGA+GGG | - | chr6.3:50553053-50553072 | None:intergenic | 45.0% | |
| GCAGACAAAGTAGAACAAGG+TGG | + | chr6.3:50551640-50551659 | MS.gene79831:CDS | 45.0% | |
| GCAGCAGACAAAGTAGAACA+AGG | + | chr6.3:50551637-50551656 | MS.gene79831:CDS | 45.0% | |
| GTCGGAAGGTCATGGATATT+TGG | + | chr6.3:50552545-50552564 | MS.gene79831:intron | 45.0% | |
| TACGTTCCCAAGTTTGGCAA+CGG | + | chr6.3:50552594-50552613 | MS.gene79831:intron | 45.0% | |
| TGACCAATCCATCCTAAGTG+AGG | - | chr6.3:50553054-50553073 | None:intergenic | 45.0% | |
| ! | TAGGAGTGCACAATATCAGC+TGG | + | chr6.3:50552994-50553013 | MS.gene79831:intron | 45.0% |
| AATGCCACCGTTGCCAAACT+TGG | - | chr6.3:50552604-50552623 | None:intergenic | 50.0% | |
| ATGCCACCGTTGCCAAACTT+GGG | - | chr6.3:50552603-50552622 | None:intergenic | 50.0% | |
| ATGGTTACTGCAGGCCAGAT+TGG | + | chr6.3:50552142-50552161 | MS.gene79831:CDS | 50.0% | |
| GGATGTAGCAGCAGTCAAGT+TGG | + | chr6.3:50553015-50553034 | MS.gene79831:CDS | 50.0% | |
| GTTCCCAAGTTTGGCAACGG+TGG | + | chr6.3:50552597-50552616 | MS.gene79831:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 50551633 | 50553251 | 50551633 | ID=MS.gene79831 |
| chr6.3 | mRNA | 50551633 | 50553251 | 50551633 | ID=MS.gene79831.t1;Parent=MS.gene79831 |
| chr6.3 | exon | 50551633 | 50552008 | 50551633 | ID=MS.gene79831.t1.exon1;Parent=MS.gene79831.t1 |
| chr6.3 | CDS | 50551633 | 50552008 | 50551633 | ID=cds.MS.gene79831.t1;Parent=MS.gene79831.t1 |
| chr6.3 | exon | 50552107 | 50552189 | 50552107 | ID=MS.gene79831.t1.exon2;Parent=MS.gene79831.t1 |
| chr6.3 | CDS | 50552107 | 50552189 | 50552107 | ID=cds.MS.gene79831.t1;Parent=MS.gene79831.t1 |
| chr6.3 | exon | 50552997 | 50553251 | 50552997 | ID=MS.gene79831.t1.exon3;Parent=MS.gene79831.t1 |
| chr6.3 | CDS | 50552997 | 50553251 | 50552997 | ID=cds.MS.gene79831.t1;Parent=MS.gene79831.t1 |
| Gene Sequence |
| Protein sequence |
