Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80136.t1 | XP_003614421.1 | 93.9 | 446 | 23 | 1 | 1 | 446 | 1 | 442 | 2.40E-231 | 811.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80136.t1 | Q6NQK2 | 57.5 | 466 | 156 | 10 | 1 | 443 | 1 | 447 | 4.3e-133 | 476.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80136.t1 | G7JX38 | 93.9 | 446 | 23 | 1 | 1 | 446 | 1 | 442 | 1.7e-231 | 811.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80136.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80136.t1 | MTR_5g053430 | 96.188 | 446 | 13 | 1 | 1 | 446 | 1 | 442 | 0.0 | 886 |
| MS.gene80136.t1 | MTR_5g053430 | 95.546 | 449 | 13 | 2 | 1 | 446 | 1 | 445 | 0.0 | 880 |
| MS.gene80136.t1 | MTR_1g093680 | 62.708 | 480 | 140 | 8 | 2 | 445 | 4 | 480 | 0.0 | 578 |
| MS.gene80136.t1 | MTR_1g093670 | 52.239 | 402 | 129 | 10 | 41 | 441 | 6 | 345 | 3.16e-125 | 367 |
| MS.gene80136.t1 | MTR_7g033320 | 54.425 | 226 | 79 | 3 | 6 | 219 | 5 | 218 | 4.08e-83 | 264 |
| MS.gene80136.t1 | MTR_2g014680 | 49.206 | 252 | 118 | 4 | 34 | 275 | 27 | 278 | 7.46e-77 | 242 |
| MS.gene80136.t1 | MTR_4g088245 | 58.586 | 198 | 79 | 2 | 36 | 230 | 44 | 241 | 3.61e-76 | 241 |
| MS.gene80136.t1 | MTR_8g069160 | 60.556 | 180 | 68 | 2 | 36 | 212 | 44 | 223 | 9.46e-73 | 229 |
| MS.gene80136.t1 | MTR_8g102240 | 59.162 | 191 | 68 | 3 | 36 | 218 | 27 | 215 | 3.04e-72 | 236 |
| MS.gene80136.t1 | MTR_8g102240 | 59.162 | 191 | 68 | 3 | 36 | 218 | 27 | 215 | 3.12e-72 | 236 |
| MS.gene80136.t1 | MTR_4g078875 | 55.330 | 197 | 83 | 2 | 32 | 223 | 19 | 215 | 1.21e-68 | 220 |
| MS.gene80136.t1 | MTR_2g090735 | 55.446 | 202 | 86 | 2 | 32 | 229 | 20 | 221 | 2.65e-64 | 209 |
| MS.gene80136.t1 | MTR_6g084430 | 30.168 | 179 | 107 | 6 | 58 | 233 | 5 | 168 | 3.41e-14 | 73.6 |
| MS.gene80136.t1 | MTR_7g097090 | 26.573 | 286 | 174 | 13 | 58 | 331 | 10 | 271 | 2.08e-11 | 65.1 |
| MS.gene80136.t1 | MTR_7g085260 | 34.091 | 176 | 88 | 11 | 58 | 221 | 17 | 176 | 8.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80136.t1 | AT1G25580 | 56.745 | 467 | 160 | 10 | 1 | 444 | 1 | 448 | 6.20e-175 | 498 |
| MS.gene80136.t1 | AT3G01600 | 55.856 | 222 | 91 | 4 | 5 | 224 | 4 | 220 | 1.89e-79 | 251 |
| MS.gene80136.t1 | AT5G14490 | 51.210 | 248 | 110 | 5 | 5 | 250 | 4 | 242 | 1.30e-77 | 243 |
| MS.gene80136.t1 | AT5G14490 | 51.210 | 248 | 110 | 5 | 5 | 250 | 7 | 245 | 1.46e-77 | 245 |
| MS.gene80136.t1 | AT5G14490 | 51.210 | 248 | 110 | 5 | 5 | 250 | 4 | 242 | 1.67e-77 | 245 |
| MS.gene80136.t1 | AT5G14490 | 51.210 | 248 | 110 | 5 | 5 | 250 | 7 | 245 | 3.50e-77 | 244 |
| MS.gene80136.t1 | AT4G29230 | 58.333 | 192 | 69 | 2 | 36 | 218 | 28 | 217 | 2.14e-74 | 240 |
| MS.gene80136.t1 | AT4G29230 | 58.333 | 192 | 69 | 2 | 36 | 218 | 28 | 217 | 1.04e-73 | 240 |
| MS.gene80136.t1 | AT4G29230 | 58.333 | 192 | 68 | 2 | 36 | 218 | 28 | 216 | 1.67e-73 | 239 |
| MS.gene80136.t1 | AT4G28500 | 51.556 | 225 | 103 | 4 | 5 | 223 | 2 | 226 | 3.97e-72 | 230 |
| MS.gene80136.t1 | AT1G28470 | 55.897 | 195 | 80 | 2 | 35 | 223 | 49 | 243 | 4.85e-71 | 227 |
| MS.gene80136.t1 | AT5G56620 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 9.69e-68 | 222 |
| MS.gene80136.t1 | AT5G56620 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 1.11e-67 | 221 |
| MS.gene80136.t1 | AT5G56620 | 54.872 | 195 | 75 | 4 | 36 | 218 | 22 | 215 | 1.75e-67 | 220 |
| MS.gene80136.t1 | AT3G18400 | 30.588 | 170 | 95 | 8 | 58 | 221 | 5 | 157 | 2.35e-13 | 71.2 |
| MS.gene80136.t1 | AT1G01720 | 25.306 | 245 | 141 | 11 | 58 | 289 | 7 | 222 | 9.09e-13 | 68.9 |
| MS.gene80136.t1 | AT1G02220 | 31.250 | 160 | 90 | 6 | 59 | 215 | 4 | 146 | 7.80e-12 | 67.0 |
| MS.gene80136.t1 | AT3G04060 | 31.737 | 167 | 91 | 8 | 58 | 216 | 20 | 171 | 8.34e-11 | 63.5 |
Find 92 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATGCTGACAATT+TGG | 0.134743 | 5.1:-42281131 | None:intergenic |
| AAAATACATGATCAGGATTT+TGG | 0.158079 | 5.1:+42282952 | MS.gene80136:CDS |
| CTTCTTCCACAGAGCAATTA+AGG | 0.224693 | 5.1:+42282900 | MS.gene80136:CDS |
| GGATCAAATTTGACACCTTT+TGG | 0.259342 | 5.1:-42282629 | None:intergenic |
| TGAACCCCATTCAAGATTAC+TGG | 0.283602 | 5.1:-42283009 | None:intergenic |
| GAAAAGCTGAGAAAACTAAT+TGG | 0.286732 | 5.1:+42283082 | MS.gene80136:CDS |
| CAAGATAGCTTTATAGCATT+TGG | 0.294737 | 5.1:+42284837 | MS.gene80136:CDS |
| TTTGTGTTTATATAGGAATT+TGG | 0.295109 | 5.1:+42284810 | MS.gene80136:intron |
| CATCTGATCAGGAGGTAATT+TGG | 0.312766 | 5.1:+42282651 | MS.gene80136:CDS |
| GGCTCAGGAGTCACAGATTT+GGG | 0.319343 | 5.1:-42283270 | None:intergenic |
| CAATAGTATGCTGACAATTT+GGG | 0.324090 | 5.1:-42281130 | None:intergenic |
| CCAACAGCAGCAAGTCAAAC+TGG | 0.324794 | 5.1:+42283179 | MS.gene80136:CDS |
| AGGCTCAGGAGTCACAGATT+TGG | 0.328067 | 5.1:-42283271 | None:intergenic |
| GACGTTCGCTGGCACAAAAC+TGG | 0.335442 | 5.1:+42282976 | MS.gene80136:CDS |
| TCTGTTGGATTCACAACAAC+TGG | 0.369929 | 5.1:+42284484 | MS.gene80136:CDS |
| ATCTTGAATGGGGTTCAAAA+AGG | 0.388213 | 5.1:+42283015 | MS.gene80136:CDS |
| ATTGTTGCTTCAATAGCTTC+AGG | 0.390657 | 5.1:-42283225 | None:intergenic |
| ACATTTGACTCTGCATTTGA+AGG | 0.393867 | 5.1:-42284671 | None:intergenic |
| GCAATTAAGGCTTATAATAC+TGG | 0.394443 | 5.1:+42282913 | MS.gene80136:CDS |
| TTTCTATATGCAGACCATCT+TGG | 0.411265 | 5.1:+42281009 | MS.gene80136:intron |
| ATATCCTTCTTCAGATGCTC+TGG | 0.424976 | 5.1:-42284620 | None:intergenic |
| GTCACAGATTTGGGAGTAAC+CGG | 0.426136 | 5.1:-42283261 | None:intergenic |
| TCATCTTTACCATCTCTAGT+AGG | 0.429288 | 5.1:-42284551 | None:intergenic |
| CTAAGCCAGTAATCTTGAAT+GGG | 0.433717 | 5.1:+42283004 | MS.gene80136:CDS |
| CAGTATTCGGATGTAGATCT+AGG | 0.435339 | 5.1:+42283309 | MS.gene80136:CDS |
| CAAATTTGATCCATCTGATC+AGG | 0.442832 | 5.1:+42282640 | MS.gene80136:CDS |
| AGGAACAGAAGAGGATGAAA+AGG | 0.451744 | 5.1:+42283125 | MS.gene80136:CDS |
| ACTAAGCCAGTAATCTTGAA+TGG | 0.454048 | 5.1:+42283003 | MS.gene80136:CDS |
| GCAAGTCAAACTGGGTGATA+AGG | 0.457369 | 5.1:+42283188 | MS.gene80136:CDS |
| AGGTTTACCTGGGGAATGGC+GGG | 0.461494 | 5.1:-42283342 | None:intergenic |
| TGCATCGGGAGCATGTGATC+TGG | 0.461888 | 5.1:+42281070 | MS.gene80136:CDS |
| AAAAGCTGAGAAAACTAATT+GGG | 0.463490 | 5.1:+42283083 | MS.gene80136:CDS |
| GGAGTTTCGACTAAGTCAAT+TGG | 0.465851 | 5.1:+42284724 | MS.gene80136:CDS |
| GCCTCCTCAGATGAATTGTC+TGG | 0.468480 | 5.1:+42284274 | MS.gene80136:intron |
| ACTCATCCTCAAAACTTGCC+AGG | 0.469716 | 5.1:+42282770 | MS.gene80136:CDS |
| TTTAAGGTTTACCTGGGGAA+TGG | 0.481491 | 5.1:-42283346 | None:intergenic |
| TCAAGTCTCTCCTCTATGGC+GGG | 0.485338 | 5.1:+42280322 | None:intergenic |
| CATAAATAGAAAGGCTGGGT+TGG | 0.487379 | 5.1:-42284586 | None:intergenic |
| ATTGAAAATAATCCTGATGA+TGG | 0.487705 | 5.1:+42284431 | MS.gene80136:CDS |
| CTTTCTATTTATGCTCAGCT+AGG | 0.488398 | 5.1:+42284596 | MS.gene80136:CDS |
| AACAATCACAAAAGTGGATC+CGG | 0.490246 | 5.1:+42283242 | MS.gene80136:CDS |
| GAGTGGCCTGGCTTGCCAAA+AGG | 0.491207 | 5.1:+42282614 | MS.gene80136:CDS |
| CTGAGCATAAATAGAAAGGC+TGG | 0.491378 | 5.1:-42284591 | None:intergenic |
| TGAAGCAACAATCACAAAAG+TGG | 0.500776 | 5.1:+42283236 | MS.gene80136:CDS |
| CTGACAATTTGGGCAAGCCT+TGG | 0.506059 | 5.1:-42281120 | None:intergenic |
| GTTATGCATCAATATCATCT+AGG | 0.507798 | 5.1:+42283105 | MS.gene80136:CDS |
| CCAGTTTGACTTGCTGCTGT+TGG | 0.516424 | 5.1:-42283179 | None:intergenic |
| ATGTCAGGTGTTAAACAAGA+TGG | 0.517198 | 5.1:+42282865 | MS.gene80136:intron |
| TATATGCAGACCATCTTGGC+TGG | 0.517331 | 5.1:+42281013 | MS.gene80136:intron |
| AAGGTTTACCTGGGGAATGG+CGG | 0.521012 | 5.1:-42283343 | None:intergenic |
| TTTGTAAGGTTGTAAAAGAG+TGG | 0.526331 | 5.1:+42282597 | MS.gene80136:intron |
| ACTGAAAATAATGCTGATGA+TGG | 0.527963 | 5.1:+42284380 | MS.gene80136:CDS |
| GTTCTGTATATGAGTAGTGC+AGG | 0.531845 | 5.1:+42283054 | MS.gene80136:CDS |
| TTGCTTGCAAAATGTGGTGT+TGG | 0.532555 | 5.1:+42282677 | MS.gene80136:CDS |
| TTTGCTTGCTCTTCACAATG+AGG | 0.533963 | 5.1:-42284308 | None:intergenic |
| CAATTTGGGCAAGCCTTGGT+AGG | 0.534551 | 5.1:-42281116 | None:intergenic |
| ACTACTCTTGAAGTGAATGA+TGG | 0.536910 | 5.1:+42282737 | MS.gene80136:CDS |
| GTAGAAACTGAACATAATGA+AGG | 0.537204 | 5.1:+42284347 | MS.gene80136:CDS |
| ACTCTGCATTTGAAGGCTCA+AGG | 0.539581 | 5.1:-42284664 | None:intergenic |
| CTAGCTGAGCATAAATAGAA+AGG | 0.539748 | 5.1:-42284595 | None:intergenic |
| TAGTGAATCACAAAATCTGT+TGG | 0.540122 | 5.1:+42284469 | MS.gene80136:CDS |
| TACCATCTCTAGTAGGAGAC+TGG | 0.544929 | 5.1:-42284544 | None:intergenic |
| TAATTGCTCTGTGGAAGAAG+TGG | 0.556020 | 5.1:-42282897 | None:intergenic |
| CAAATTACCTCCTGATCAGA+TGG | 0.556689 | 5.1:-42282650 | None:intergenic |
| AACTCATCAACGAAAGGATG+AGG | 0.560139 | 5.1:-42282710 | None:intergenic |
| AGGACCAGAGCATCTGAAGA+AGG | 0.560183 | 5.1:+42284616 | MS.gene80136:CDS |
| AGACACACCCGCCATTCCCC+AGG | 0.573342 | 5.1:+42283335 | MS.gene80136:CDS |
| TGTAGAGAATGACACACCTT+CGG | 0.575337 | 5.1:+42284703 | MS.gene80136:CDS |
| AGCCAGTCTCCTACTAGAGA+TGG | 0.577237 | 5.1:+42284542 | MS.gene80136:CDS |
| ATTATGTTCAGTTTCTACCA+TGG | 0.577859 | 5.1:-42284342 | None:intergenic |
| AAGGTTGTAAAAGAGTGGCC+TGG | 0.581336 | 5.1:+42282602 | MS.gene80136:intron |
| CAAGTCTCTCCTCTATGGCG+GGG | 0.593225 | 5.1:+42280323 | None:intergenic |
| AGCAAAAGATGATCTATCCA+TGG | 0.596236 | 5.1:+42284325 | MS.gene80136:CDS |
| ATGCAGACCATCTTGGCTGG+TGG | 0.599205 | 5.1:+42281016 | MS.gene80136:intron |
| CAACAGCAGCAAGTCAAACT+GGG | 0.602243 | 5.1:+42283180 | MS.gene80136:CDS |
| TATATGAGTAGTGCAGGAGG+AGG | 0.609676 | 5.1:+42283060 | MS.gene80136:CDS |
| GTAATAAACTCATCAACGAA+AGG | 0.610589 | 5.1:-42282716 | None:intergenic |
| TGGCACTTGCTTGCAAAATG+TGG | 0.618127 | 5.1:+42282671 | MS.gene80136:CDS |
| TAGAAACTGAACATAATGAA+GGG | 0.620128 | 5.1:+42284348 | MS.gene80136:CDS |
| GTGATCTGGAAAATGTTACA+TGG | 0.621927 | 5.1:+42281084 | MS.gene80136:CDS |
| TGAGCATAAATAGAAAGGCT+GGG | 0.624006 | 5.1:-42284590 | None:intergenic |
| ACAGAAGAGGATGAAAAGGA+TGG | 0.629598 | 5.1:+42283129 | MS.gene80136:CDS |
| ATTTGATCCATCTGATCAGG+AGG | 0.636045 | 5.1:+42282643 | MS.gene80136:CDS |
| AATTGCTCTGTGGAAGAAGT+GGG | 0.639626 | 5.1:-42282896 | None:intergenic |
| ATATCATCTAGGAACAGAAG+AGG | 0.646141 | 5.1:+42283116 | MS.gene80136:CDS |
| ATGGAAAAGCAATCCTACCA+AGG | 0.655385 | 5.1:+42281103 | MS.gene80136:CDS |
| CTGTATATGAGTAGTGCAGG+AGG | 0.660155 | 5.1:+42283057 | MS.gene80136:CDS |
| AGGCTTATAATACTGGCACT+CGG | 0.668317 | 5.1:+42282920 | MS.gene80136:CDS |
| TATAAGCCTTAATTGCTCTG+TGG | 0.669172 | 5.1:-42282906 | None:intergenic |
| TAAGCCAGTAATCTTGAATG+GGG | 0.669245 | 5.1:+42283005 | MS.gene80136:CDS |
| TGACTTAGTCGAAACTCCGA+AGG | 0.670660 | 5.1:-42284719 | None:intergenic |
| TATAGCATTTGGTTACAACA+AGG | 0.688806 | 5.1:+42284848 | MS.gene80136:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTATTTTTTTT+TGG | + | chr5.1:42280576-42280595 | MS.gene80136:intron | 0.0% |
| !! | ATGGTATATAAATAAAAAAA+AGG | - | chr5.1:42282524-42282543 | None:intergenic | 10.0% |
| !!! | ATCTATTTTTTTTTTTTGTA+AGG | + | chr5.1:42282583-42282602 | MS.gene80136:intron | 10.0% |
| !! | AAATTGTTCAATATTTGTAA+AGG | - | chr5.1:42282077-42282096 | None:intergenic | 15.0% |
| !! | AATTGTTCAATATTTGTAAA+GGG | - | chr5.1:42282076-42282095 | None:intergenic | 15.0% |
| !! | ATATCAAAATAATCTTAAAC+TGG | + | chr5.1:42281597-42281616 | MS.gene80136:intron | 15.0% |
| !!! | ACATTTTTGTTTATTAATCA+AGG | + | chr5.1:42284095-42284114 | MS.gene80136:intron | 15.0% |
| !!! | TATATTTTTAAATCATGTCT+TGG | + | chr5.1:42281571-42281590 | MS.gene80136:intron | 15.0% |
| !!! | TTTTTCCTGATTATATTTTA+GGG | + | chr5.1:42281197-42281216 | MS.gene80136:intron | 15.0% |
| !! | AAACAAGTGTATAAGAAAAT+GGG | + | chr5.1:42281689-42281708 | MS.gene80136:intron | 20.0% |
| !! | AAAGCATATATCCTATAAAT+AGG | + | chr5.1:42281327-42281346 | MS.gene80136:intron | 20.0% |
| !! | AAGAAACATTACTTCTAATA+TGG | - | chr5.1:42281646-42281665 | None:intergenic | 20.0% |
| !! | ACATTTGGATAAAAACTAAA+TGG | + | chr5.1:42280692-42280711 | MS.gene80136:intron | 20.0% |
| !! | ATAAAAAATCATTGAGAACA+TGG | - | chr5.1:42284755-42284774 | None:intergenic | 20.0% |
| !! | ATATATCCTATAAATAGGAA+TGG | + | chr5.1:42281332-42281351 | MS.gene80136:intron | 20.0% |
| !! | ATTAAAATCTAAATACTCAG+TGG | - | chr5.1:42283591-42283610 | None:intergenic | 20.0% |
| !! | CATTTGGATAAAAACTAAAT+GGG | + | chr5.1:42280693-42280712 | MS.gene80136:intron | 20.0% |
| !! | TAAAAAATCATTGAGAACAT+GGG | - | chr5.1:42284754-42284773 | None:intergenic | 20.0% |
| !! | TATATCCTATAAATAGGAAT+GGG | + | chr5.1:42281333-42281352 | MS.gene80136:intron | 20.0% |
| !! | TGAAGGAACATTATTATATA+GGG | - | chr5.1:42281813-42281832 | None:intergenic | 20.0% |
| !! | TTATAGTGAAAAACAGTATT+CGG | + | chr5.1:42283296-42283315 | MS.gene80136:CDS | 20.0% |
| !! | TTTGTGTTTATATAGGAATT+TGG | + | chr5.1:42284810-42284829 | MS.gene80136:intron | 20.0% |
| !!! | AACATGAAAAAATGGTTTTA+AGG | - | chr5.1:42283365-42283384 | None:intergenic | 20.0% |
| !!! | ATGTGTTTTCTATGTTTAAA+TGG | + | chr5.1:42280745-42280764 | MS.gene80136:intron | 20.0% |
| !!! | ATTTGATAATGAAACATAGT+AGG | - | chr5.1:42280365-42280384 | None:intergenic | 20.0% |
| !!! | CTTTTTCCTGATTATATTTT+AGG | + | chr5.1:42281196-42281215 | MS.gene80136:intron | 20.0% |
| !!! | TCATTTAAGATAGGTTTTTA+TGG | + | chr5.1:42283627-42283646 | MS.gene80136:intron | 20.0% |
| !!! | TCTTTGATAACATGAAAAAA+TGG | - | chr5.1:42283373-42283392 | None:intergenic | 20.0% |
| !!! | TTACTTAACTGTAATTTTGA+CGG | + | chr5.1:42282392-42282411 | MS.gene80136:intron | 20.0% |
| !!! | TTGTTTTAACTTCATGAATT+TGG | + | chr5.1:42280669-42280688 | MS.gene80136:intron | 20.0% |
| ! | AAAAGCTGAGAAAACTAATT+GGG | + | chr5.1:42283083-42283102 | MS.gene80136:CDS | 25.0% |
| ! | AAAAGGCTGTAAAAAGATTA+TGG | + | chr5.1:42283032-42283051 | MS.gene80136:CDS | 25.0% |
| ! | AACAAGTGTATAAGAAAATG+GGG | + | chr5.1:42281690-42281709 | MS.gene80136:intron | 25.0% |
| ! | AATCCATTGTAAGTTAGTTA+AGG | + | chr5.1:42281275-42281294 | MS.gene80136:intron | 25.0% |
| ! | ACTATTATTGAACGAATAGA+AGG | - | chr5.1:42281435-42281454 | None:intergenic | 25.0% |
| ! | AGCATTATTAAAGCCATTAA+GGG | - | chr5.1:42284054-42284073 | None:intergenic | 25.0% |
| ! | ATAAACAAAAATGTGCAGAA+TGG | - | chr5.1:42284089-42284108 | None:intergenic | 25.0% |
| ! | ATAGAACACAAAAATAGATC+AGG | - | chr5.1:42284241-42284260 | None:intergenic | 25.0% |
| ! | ATCCATTGTAAGTTAGTTAA+GGG | + | chr5.1:42281276-42281295 | MS.gene80136:intron | 25.0% |
| ! | ATCTAATCCATTAATTCTGT+TGG | + | chr5.1:42281474-42281493 | MS.gene80136:intron | 25.0% |
| ! | ATCTATCAAGTACTAAACTA+TGG | - | chr5.1:42281255-42281274 | None:intergenic | 25.0% |
| ! | ATGTACCCTAAAATATAATC+AGG | - | chr5.1:42281205-42281224 | None:intergenic | 25.0% |
| ! | ATTGAAAATAATCCTGATGA+TGG | + | chr5.1:42284431-42284450 | MS.gene80136:CDS | 25.0% |
| ! | CAATATTCAAGTGCTATATA+TGG | - | chr5.1:42282543-42282562 | None:intergenic | 25.0% |
| ! | CTATCTTAAATGATGTCTAA+AGG | - | chr5.1:42283620-42283639 | None:intergenic | 25.0% |
| ! | CTTAAAAACTCTAACTAAAC+AGG | - | chr5.1:42282168-42282187 | None:intergenic | 25.0% |
| ! | GAAACAAGTGTATAAGAAAA+TGG | + | chr5.1:42281688-42281707 | MS.gene80136:intron | 25.0% |
| ! | GTGAAGGAACATTATTATAT+AGG | - | chr5.1:42281814-42281833 | None:intergenic | 25.0% |
| ! | TAAATCCCATTCCTATTTAT+AGG | - | chr5.1:42281341-42281360 | None:intergenic | 25.0% |
| ! | TAGAAACTGAACATAATGAA+GGG | + | chr5.1:42284348-42284367 | MS.gene80136:CDS | 25.0% |
| ! | TAGCATTATTAAAGCCATTA+AGG | - | chr5.1:42284055-42284074 | None:intergenic | 25.0% |
| ! | TTAGGCATTTAATCAATATC+AGG | - | chr5.1:42280809-42280828 | None:intergenic | 25.0% |
| ! | TTCTTTCTTAAGACATTTGT+AGG | - | chr5.1:42282438-42282457 | None:intergenic | 25.0% |
| !! | AAAATACATGATCAGGATTT+TGG | + | chr5.1:42282952-42282971 | MS.gene80136:CDS | 25.0% |
| !! | AAATGCCTAAATCTGAAATA+TGG | + | chr5.1:42280819-42280838 | MS.gene80136:intron | 25.0% |
| !! | AACCAAAATAAAAAGTGCAT+CGG | + | chr5.1:42281055-42281074 | MS.gene80136:CDS | 25.0% |
| !! | AATCCTGATCATGTATTTTT+CGG | - | chr5.1:42282951-42282970 | None:intergenic | 25.0% |
| !! | ACGCATTTTTGTGTTTATAT+AGG | + | chr5.1:42284803-42284822 | MS.gene80136:intron | 25.0% |
| !! | CTTTAGACATCATTTAAGAT+AGG | + | chr5.1:42283618-42283637 | MS.gene80136:intron | 25.0% |
| !! | TCTGATTTGATTTATGAGAT+GGG | + | chr5.1:42280422-42280441 | MS.gene80136:intron | 25.0% |
| !! | TTCTGATTTGATTTATGAGA+TGG | + | chr5.1:42280421-42280440 | MS.gene80136:intron | 25.0% |
| !!! | CGCTGTTATCTTTTTAATTT+AGG | + | chr5.1:42282135-42282154 | MS.gene80136:intron | 25.0% |
| !!! | CTAATTTTGGATTTGCTATA+AGG | + | chr5.1:42284146-42284165 | MS.gene80136:intron | 25.0% |
| !!! | GAATACTGTTTTTCACTATA+AGG | - | chr5.1:42283297-42283316 | None:intergenic | 25.0% |
| !!! | GCATTATTTTACTCTTAACA+TGG | + | chr5.1:42281783-42281802 | MS.gene80136:intron | 25.0% |
| !!! | TATTAAAGCCATATTTCTAG+AGG | - | chr5.1:42283958-42283977 | None:intergenic | 25.0% |
| !!! | TATTTTAGGGTACATTGTTA+TGG | + | chr5.1:42281210-42281229 | MS.gene80136:intron | 25.0% |
| AACACACAAAACAACTTGTA+AGG | - | chr5.1:42284008-42284027 | None:intergenic | 30.0% | |
| AATCTAAATACTCAGTGGTT+TGG | - | chr5.1:42283586-42283605 | None:intergenic | 30.0% | |
| AATGGTCTATCATTAGACTT+TGG | + | chr5.1:42282230-42282249 | MS.gene80136:intron | 30.0% | |
| AATTCTGTTGGAAAAGGATA+GGG | + | chr5.1:42281486-42281505 | MS.gene80136:intron | 30.0% | |
| ACAAGTGTATAAGAAAATGG+GGG | + | chr5.1:42281691-42281710 | MS.gene80136:intron | 30.0% | |
| ACTGAAAATAATGCTGATGA+TGG | + | chr5.1:42284380-42284399 | MS.gene80136:CDS | 30.0% | |
| ACTTCATGAATTTGGACATT+TGG | + | chr5.1:42280677-42280696 | MS.gene80136:intron | 30.0% | |
| AGTTAGTTAAGGGGTTATAT+AGG | + | chr5.1:42281286-42281305 | MS.gene80136:intron | 30.0% | |
| ATTATGTTCAGTTTCTACCA+TGG | - | chr5.1:42284345-42284364 | None:intergenic | 30.0% | |
| CAAGTCCATATTTCAGATTT+AGG | - | chr5.1:42280827-42280846 | None:intergenic | 30.0% | |
| CAATAGTATGCTGACAATTT+GGG | - | chr5.1:42281133-42281152 | None:intergenic | 30.0% | |
| CAATATGTTGTTACATCAGT+TGG | + | chr5.1:42282326-42282345 | MS.gene80136:intron | 30.0% | |
| GAAAAGCTGAGAAAACTAAT+TGG | + | chr5.1:42283082-42283101 | MS.gene80136:CDS | 30.0% | |
| GCAATTAAGGCTTATAATAC+TGG | + | chr5.1:42282913-42282932 | MS.gene80136:CDS | 30.0% | |
| GCATTTGATGAGATTAGAAT+CGG | + | chr5.1:42281373-42281392 | MS.gene80136:intron | 30.0% | |
| GTAATAAACTCATCAACGAA+AGG | - | chr5.1:42282719-42282738 | None:intergenic | 30.0% | |
| GTAGAAACTGAACATAATGA+AGG | + | chr5.1:42284347-42284366 | MS.gene80136:CDS | 30.0% | |
| GTTATGCATCAATATCATCT+AGG | + | chr5.1:42283105-42283124 | MS.gene80136:CDS | 30.0% | |
| TAAGCTTCAATGAAAATGTC+AGG | + | chr5.1:42282850-42282869 | MS.gene80136:intron | 30.0% | |
| TAATAATGTTCCTTCACTTC+TGG | + | chr5.1:42281817-42281836 | MS.gene80136:intron | 30.0% | |
| TAATTCTGTTGGAAAAGGAT+AGG | + | chr5.1:42281485-42281504 | MS.gene80136:intron | 30.0% | |
| TAGTGAATCACAAAATCTGT+TGG | + | chr5.1:42284469-42284488 | MS.gene80136:CDS | 30.0% | |
| TATAGCATTTGGTTACAACA+AGG | + | chr5.1:42284848-42284867 | MS.gene80136:CDS | 30.0% | |
| TATTAAGTAAGAGATTCCTC+TGG | - | chr5.1:42280916-42280935 | None:intergenic | 30.0% | |
| TCAATAGTATGCTGACAATT+TGG | - | chr5.1:42281134-42281153 | None:intergenic | 30.0% | |
| TCCATTAATTCTGTTGGAAA+AGG | + | chr5.1:42281480-42281499 | MS.gene80136:intron | 30.0% | |
| TCCATTGTAAGTTAGTTAAG+GGG | + | chr5.1:42281277-42281296 | MS.gene80136:intron | 30.0% | |
| TGCATAATATATGCAATGTC+CGG | + | chr5.1:42283743-42283762 | MS.gene80136:intron | 30.0% | |
| TTATGAGATCGTTTGAGAAA+AGG | + | chr5.1:42282267-42282286 | MS.gene80136:intron | 30.0% | |
| TTTGTAAGGTTGTAAAAGAG+TGG | + | chr5.1:42282597-42282616 | MS.gene80136:intron | 30.0% | |
| ! | ACCAAAATAAAAAGTGCATC+GGG | + | chr5.1:42281056-42281075 | MS.gene80136:CDS | 30.0% |
| ! | ACCATGTCAATTTTAAACCA+AGG | - | chr5.1:42280643-42280662 | None:intergenic | 30.0% |
| ! | ATTTGATTTATGAGATGGGT+TGG | + | chr5.1:42280426-42280445 | MS.gene80136:intron | 30.0% |
| ! | GATAATGCTCTTAGATTTTG+TGG | + | chr5.1:42280846-42280865 | MS.gene80136:intron | 30.0% |
| ! | GATTAGAATCGGAAAAGTTT+TGG | + | chr5.1:42281384-42281403 | MS.gene80136:intron | 30.0% |
| ! | TCCTTGGTTTAAAATTGACA+TGG | + | chr5.1:42280639-42280658 | MS.gene80136:intron | 30.0% |
| ! | TCCTTTTCCAACAGAATTAA+TGG | - | chr5.1:42281484-42281503 | None:intergenic | 30.0% |
| ! | TGGTTTAAAATTGACATGGT+TGG | + | chr5.1:42280643-42280662 | MS.gene80136:intron | 30.0% |
| ! | TTTCACATCCTCTAGAAATA+TGG | + | chr5.1:42283947-42283966 | MS.gene80136:intron | 30.0% |
| ! | TTTTGGTCTCTTGATATCTA+GGG | + | chr5.1:42281401-42281420 | MS.gene80136:intron | 30.0% |
| !! | CAAGATAGCTTTATAGCATT+TGG | + | chr5.1:42284837-42284856 | MS.gene80136:CDS | 30.0% |
| !! | GTTTGTGTTTTTGTTCAAGT+TGG | + | chr5.1:42280485-42280504 | MS.gene80136:intron | 30.0% |
| !! | GTTTTTAAGCGTGTATTAGA+TGG | + | chr5.1:42282179-42282198 | MS.gene80136:intron | 30.0% |
| !! | TACTGTTTTTCACTATAAGG+AGG | - | chr5.1:42283294-42283313 | None:intergenic | 30.0% |
| !! | TTAGATTATGTGTGTTGACT+AGG | + | chr5.1:42280949-42280968 | MS.gene80136:intron | 30.0% |
| !! | TTGTTTTGTGTGTTTGAGTT+AGG | + | chr5.1:42284014-42284033 | MS.gene80136:intron | 30.0% |
| !!! | AAATGGTTTTAAGGTTTACC+TGG | - | chr5.1:42283356-42283375 | None:intergenic | 30.0% |
| !!! | AATGGTTTTAAGGTTTACCT+GGG | - | chr5.1:42283355-42283374 | None:intergenic | 30.0% |
| !!! | GGAAAACTTTTTTTTGGTGA+TGG | - | chr5.1:42283783-42283802 | None:intergenic | 30.0% |
| !!! | TAGGAGGGAAAACTTTTTTT+TGG | - | chr5.1:42283789-42283808 | None:intergenic | 30.0% |
| !!! | TTGGTCAGTTTAGGTTTTTT+TGG | + | chr5.1:42280504-42280523 | MS.gene80136:intron | 30.0% |
| AAAGTCAGAAATTAGAGACC+CGG | + | chr5.1:42281750-42281769 | MS.gene80136:intron | 35.0% | |
| AACAATCACAAAAGTGGATC+CGG | + | chr5.1:42283242-42283261 | MS.gene80136:CDS | 35.0% | |
| ACATTTGACTCTGCATTTGA+AGG | - | chr5.1:42284674-42284693 | None:intergenic | 35.0% | |
| ACCCCTTAACTAACTTACAA+TGG | - | chr5.1:42281281-42281300 | None:intergenic | 35.0% | |
| ACTAAGCCAGTAATCTTGAA+TGG | + | chr5.1:42283003-42283022 | MS.gene80136:CDS | 35.0% | |
| ACTACTCTTGAAGTGAATGA+TGG | + | chr5.1:42282737-42282756 | MS.gene80136:CDS | 35.0% | |
| AGGAATGGGATTTATGTTGA+GGG | + | chr5.1:42281347-42281366 | MS.gene80136:intron | 35.0% | |
| AGGGTACATTGTTATGGAAT+GGG | + | chr5.1:42281216-42281235 | MS.gene80136:intron | 35.0% | |
| AGTTCATGGCAAGTCATAAT+AGG | - | chr5.1:42283409-42283428 | None:intergenic | 35.0% | |
| ATAAACATCGTGTCGTAAAC+CGG | - | chr5.1:42280776-42280795 | None:intergenic | 35.0% | |
| ATAGACCATTTGAATCCAGA+TGG | - | chr5.1:42282220-42282239 | None:intergenic | 35.0% | |
| ATATCATCTAGGAACAGAAG+AGG | + | chr5.1:42283116-42283135 | MS.gene80136:CDS | 35.0% | |
| ATATTGCAGGCTAAATAGGT+GGG | - | chr5.1:42282312-42282331 | None:intergenic | 35.0% | |
| ATCTTGAATGGGGTTCAAAA+AGG | + | chr5.1:42283015-42283034 | MS.gene80136:CDS | 35.0% | |
| ATGTCAGGTGTTAAACAAGA+TGG | + | chr5.1:42282865-42282884 | MS.gene80136:intron | 35.0% | |
| ATGTTGCAAATGCCATTCAT+GGG | - | chr5.1:42281853-42281872 | None:intergenic | 35.0% | |
| ATTAGACTTTGGTCCATCAT+AGG | + | chr5.1:42282241-42282260 | MS.gene80136:intron | 35.0% | |
| CAAAACAACTTGTAAGGTAC+AGG | - | chr5.1:42284002-42284021 | None:intergenic | 35.0% | |
| CAAATTTGATCCATCTGATC+AGG | + | chr5.1:42282640-42282659 | MS.gene80136:CDS | 35.0% | |
| CAACATATTGCAGGCTAAAT+AGG | - | chr5.1:42282316-42282335 | None:intergenic | 35.0% | |
| CATAATATATGCAATGTCCG+GGG | + | chr5.1:42283745-42283764 | MS.gene80136:intron | 35.0% | |
| CTAAGCCAGTAATCTTGAAT+GGG | + | chr5.1:42283004-42283023 | MS.gene80136:CDS | 35.0% | |
| CTAGCTGAGCATAAATAGAA+AGG | - | chr5.1:42284598-42284617 | None:intergenic | 35.0% | |
| CTGATGTAACAACATATTGC+AGG | - | chr5.1:42282325-42282344 | None:intergenic | 35.0% | |
| CTTAGTTTCAATCCACCTAT+AGG | + | chr5.1:42283838-42283857 | MS.gene80136:intron | 35.0% | |
| CTTTCTATTTATGCTCAGCT+AGG | + | chr5.1:42284596-42284615 | MS.gene80136:CDS | 35.0% | |
| GATAATGAGTACTCAGTAGT+AGG | + | chr5.1:42283473-42283492 | MS.gene80136:intron | 35.0% | |
| GATCTCATAATGTCCTATGA+TGG | - | chr5.1:42282257-42282276 | None:intergenic | 35.0% | |
| GCATAATATATGCAATGTCC+GGG | + | chr5.1:42283744-42283763 | MS.gene80136:intron | 35.0% | |
| GTGATCTGGAAAATGTTACA+TGG | + | chr5.1:42281084-42281103 | MS.gene80136:CDS | 35.0% | |
| GTGTTCTATACTATTTACCG+AGG | + | chr5.1:42284252-42284271 | MS.gene80136:intron | 35.0% | |
| TAAGCCAGTAATCTTGAATG+GGG | + | chr5.1:42283005-42283024 | MS.gene80136:CDS | 35.0% | |
| TAAGGGGTTATATAGGTAGT+TGG | + | chr5.1:42281293-42281312 | MS.gene80136:intron | 35.0% | |
| TAGGAATGGGATTTATGTTG+AGG | + | chr5.1:42281346-42281365 | MS.gene80136:intron | 35.0% | |
| TAGGGTACATTGTTATGGAA+TGG | + | chr5.1:42281215-42281234 | MS.gene80136:intron | 35.0% | |
| TATAAGCCTTAATTGCTCTG+TGG | - | chr5.1:42282909-42282928 | None:intergenic | 35.0% | |
| TCAAACCATCTGGATTCAAA+TGG | + | chr5.1:42282212-42282231 | MS.gene80136:intron | 35.0% | |
| TCATCTTTACCATCTCTAGT+AGG | - | chr5.1:42284554-42284573 | None:intergenic | 35.0% | |
| TGAAGCAACAATCACAAAAG+TGG | + | chr5.1:42283236-42283255 | MS.gene80136:CDS | 35.0% | |
| TGAGCATAAATAGAAAGGCT+GGG | - | chr5.1:42284593-42284612 | None:intergenic | 35.0% | |
| TTGTTACATCAGTTGGAGTT+TGG | + | chr5.1:42282333-42282352 | MS.gene80136:intron | 35.0% | |
| TTTAAGCGTGTATTAGATGG+AGG | + | chr5.1:42282182-42282201 | MS.gene80136:intron | 35.0% | |
| TTTCTATATGCAGACCATCT+TGG | + | chr5.1:42281009-42281028 | MS.gene80136:intron | 35.0% | |
| ! | AAATTAGAAGTGTAGCCAAG+TGG | - | chr5.1:42284133-42284152 | None:intergenic | 35.0% |
| ! | ATTCACTATCCCACCATTTT+TGG | - | chr5.1:42284457-42284476 | None:intergenic | 35.0% |
| ! | ATTGTTGCTTCAATAGCTTC+AGG | - | chr5.1:42283228-42283247 | None:intergenic | 35.0% |
| ! | CTTGGCTACACTTCTAATTT+TGG | + | chr5.1:42284133-42284152 | MS.gene80136:intron | 35.0% |
| ! | GGATCAAATTTGACACCTTT+TGG | - | chr5.1:42282632-42282651 | None:intergenic | 35.0% |
| ! | TTGTAAGGTACAGGCTTTTA+AGG | - | chr5.1:42283993-42284012 | None:intergenic | 35.0% |
| !! | CTATAGGTGGATTGAAACTA+AGG | - | chr5.1:42283840-42283859 | None:intergenic | 35.0% |
| !! | GTTTTGGTCTCTTGATATCT+AGG | + | chr5.1:42281400-42281419 | MS.gene80136:intron | 35.0% |
| !! | TCCCGATGCACTTTTTATTT+TGG | - | chr5.1:42281060-42281079 | None:intergenic | 35.0% |
| !! | TGGCTTTAATAGTGCAGATA+AGG | + | chr5.1:42283967-42283986 | MS.gene80136:intron | 35.0% |
| !! | TTGACATTTAGCTTGTGAGT+TGG | - | chr5.1:42282362-42282381 | None:intergenic | 35.0% |
| !! | TTGTTCAAGTTGGTCAGTTT+AGG | + | chr5.1:42280495-42280514 | MS.gene80136:intron | 35.0% |
| !!! | AACTTTTTTTTGGTGATGGC+CGG | - | chr5.1:42283779-42283798 | None:intergenic | 35.0% |
| !!! | ATGGTTTTAAGGTTTACCTG+GGG | - | chr5.1:42283354-42283373 | None:intergenic | 35.0% |
| AAATAATGCCCCATTGCTTC+CGG | - | chr5.1:42281772-42281791 | None:intergenic | 40.0% | |
| AACTCATCAACGAAAGGATG+AGG | - | chr5.1:42282713-42282732 | None:intergenic | 40.0% | |
| AATTGCTCTGTGGAAGAAGT+GGG | - | chr5.1:42282899-42282918 | None:intergenic | 40.0% | |
| ACACTACACACTAGAGTTCA+TGG | - | chr5.1:42283423-42283442 | None:intergenic | 40.0% | |
| ACAGAAGAGGATGAAAAGGA+TGG | + | chr5.1:42283129-42283148 | MS.gene80136:CDS | 40.0% | |
| ACTAAGTGTAGCTAGTTCCT+TGG | + | chr5.1:42280623-42280642 | MS.gene80136:intron | 40.0% | |
| ACTTCAACAGTCTCCCTTAA+TGG | + | chr5.1:42284038-42284057 | MS.gene80136:intron | 40.0% | |
| AGGAACAGAAGAGGATGAAA+AGG | + | chr5.1:42283125-42283144 | MS.gene80136:CDS | 40.0% | |
| AGGCTTATAATACTGGCACT+CGG | + | chr5.1:42282920-42282939 | MS.gene80136:CDS | 40.0% | |
| ATATCCTTCTTCAGATGCTC+TGG | - | chr5.1:42284623-42284642 | None:intergenic | 40.0% | |
| ATATTTGTAAAGGGCCCACA+TGG | - | chr5.1:42282067-42282086 | None:intergenic | 40.0% | |
| ATGGAAAAGCAATCCTACCA+AGG | + | chr5.1:42281103-42281122 | MS.gene80136:CDS | 40.0% | |
| ATGGGATTTATGTTGAGGGT+AGG | + | chr5.1:42281351-42281370 | MS.gene80136:intron | 40.0% | |
| ATTTGATCCATCTGATCAGG+AGG | + | chr5.1:42282643-42282662 | MS.gene80136:CDS | 40.0% | |
| CAAATTACCTCCTGATCAGA+TGG | - | chr5.1:42282653-42282672 | None:intergenic | 40.0% | |
| CAGTATTCGGATGTAGATCT+AGG | + | chr5.1:42283309-42283328 | MS.gene80136:CDS | 40.0% | |
| CATAAATAGAAAGGCTGGGT+TGG | - | chr5.1:42284589-42284608 | None:intergenic | 40.0% | |
| CATATTGCAGGCTAAATAGG+TGG | - | chr5.1:42282313-42282332 | None:intergenic | 40.0% | |
| CATCTATGTAGTAAGACCAG+AGG | + | chr5.1:42280897-42280916 | MS.gene80136:intron | 40.0% | |
| CATCTGATCAGGAGGTAATT+TGG | + | chr5.1:42282651-42282670 | MS.gene80136:CDS | 40.0% | |
| CATTCAACCAGCATGAAAGT+GGG | + | chr5.1:42281720-42281739 | MS.gene80136:intron | 40.0% | |
| CTATGTTTAAATGGCGTTGC+CGG | + | chr5.1:42280754-42280773 | MS.gene80136:intron | 40.0% | |
| CTGAGCATAAATAGAAAGGC+TGG | - | chr5.1:42284594-42284613 | None:intergenic | 40.0% | |
| CTGTAGTATCTTTCTTCTGC+TGG | + | chr5.1:42283899-42283918 | MS.gene80136:intron | 40.0% | |
| CTTAGTCTACAAATCCCAGT+AGG | - | chr5.1:42281900-42281919 | None:intergenic | 40.0% | |
| CTTCTTCCACAGAGCAATTA+AGG | + | chr5.1:42282900-42282919 | MS.gene80136:CDS | 40.0% | |
| GAACAAGATCATGAACTCGT+TGG | + | chr5.1:42281977-42281996 | MS.gene80136:intron | 40.0% | |
| GATGTTGCAAATGCCATTCA+TGG | - | chr5.1:42281854-42281873 | None:intergenic | 40.0% | |
| GGAGTTTCGACTAAGTCAAT+TGG | + | chr5.1:42284724-42284743 | MS.gene80136:CDS | 40.0% | |
| GTGTATTAGATGGAGGATAG+AGG | + | chr5.1:42282189-42282208 | MS.gene80136:intron | 40.0% | |
| GTTCTGTATATGAGTAGTGC+AGG | + | chr5.1:42283054-42283073 | MS.gene80136:CDS | 40.0% | |
| TAAAACGCAAGTCACAAACC+TGG | - | chr5.1:42282791-42282810 | None:intergenic | 40.0% | |
| TAATTGCTCTGTGGAAGAAG+TGG | - | chr5.1:42282900-42282919 | None:intergenic | 40.0% | |
| TATTGCAGGCTAAATAGGTG+GGG | - | chr5.1:42282311-42282330 | None:intergenic | 40.0% | |
| TCATCCAGACAATTCATCTG+AGG | - | chr5.1:42284281-42284300 | None:intergenic | 40.0% | |
| TCATTCAACCAGCATGAAAG+TGG | + | chr5.1:42281719-42281738 | MS.gene80136:intron | 40.0% | |
| TCTGTTGGATTCACAACAAC+TGG | + | chr5.1:42284484-42284503 | MS.gene80136:CDS | 40.0% | |
| TGAACCCCATTCAAGATTAC+TGG | - | chr5.1:42283012-42283031 | None:intergenic | 40.0% | |
| TGAGCTTAGCTCAGTTTGTA+GGG | + | chr5.1:42283716-42283735 | MS.gene80136:intron | 40.0% | |
| TGTAGAGAATGACACACCTT+CGG | + | chr5.1:42284703-42284722 | MS.gene80136:CDS | 40.0% | |
| TGTTTCTTCACCAGAAGTGA+AGG | - | chr5.1:42281830-42281849 | None:intergenic | 40.0% | |
| TTAAGCCCACTAGTGAGAAA+AGG | + | chr5.1:42283656-42283675 | MS.gene80136:intron | 40.0% | |
| TTGCTTGCAAAATGTGGTGT+TGG | + | chr5.1:42282677-42282696 | MS.gene80136:CDS | 40.0% | |
| TTTGCTTGCTCTTCACAATG+AGG | - | chr5.1:42284311-42284330 | None:intergenic | 40.0% | |
| ! | ACAGAACCTTTTCTCACTAG+TGG | - | chr5.1:42283665-42283684 | None:intergenic | 40.0% |
| ! | CAGAACCTTTTCTCACTAGT+GGG | - | chr5.1:42283664-42283683 | None:intergenic | 40.0% |
| ! | CTGTTCCTTCACACCATTTT+TGG | - | chr5.1:42284406-42284425 | None:intergenic | 40.0% |
| ! | TCTAAAACCCACTTTCATGC+TGG | - | chr5.1:42281730-42281749 | None:intergenic | 40.0% |
| ! | TTTAAGGTTTACCTGGGGAA+TGG | - | chr5.1:42283349-42283368 | None:intergenic | 40.0% |
| ! | TTTTCACTATAAGGAGGCTC+AGG | - | chr5.1:42283288-42283307 | None:intergenic | 40.0% |
| !! | ATCCTGATGATGGCCAAAAA+TGG | + | chr5.1:42284441-42284460 | MS.gene80136:CDS | 40.0% |
| !! | ATGCTGATGATGGCCAAAAA+TGG | + | chr5.1:42284390-42284409 | MS.gene80136:CDS | 40.0% |
| !! | TGATGATGGCCAAAAATGGT+GGG | + | chr5.1:42284394-42284413 | MS.gene80136:CDS | 40.0% |
| !!! | ACTTTTTTTTGGTGATGGCC+GGG | - | chr5.1:42283778-42283797 | None:intergenic | 40.0% |
| AAGGTTGTAAAAGAGTGGCC+TGG | + | chr5.1:42282602-42282621 | MS.gene80136:intron | 45.0% | |
| AATAATGCCCCATTGCTTCC+GGG | - | chr5.1:42281771-42281790 | None:intergenic | 45.0% | |
| AATTAGAGACCCGGAAGCAA+TGG | + | chr5.1:42281759-42281778 | MS.gene80136:intron | 45.0% | |
| ACAGTACGTACATGCTAGGA+GGG | - | chr5.1:42283804-42283823 | None:intergenic | 45.0% | |
| ACCATAGCCCACAATGTGTT+AGG | + | chr5.1:42282015-42282034 | MS.gene80136:intron | 45.0% | |
| ACTCATCCTCAAAACTTGCC+AGG | + | chr5.1:42282770-42282789 | MS.gene80136:CDS | 45.0% | |
| ACTCTGCATTTGAAGGCTCA+AGG | - | chr5.1:42284667-42284686 | None:intergenic | 45.0% | |
| AGGATAGAGGTCAAACCATC+TGG | + | chr5.1:42282202-42282221 | MS.gene80136:intron | 45.0% | |
| ATCGCAAGCCTAACACATTG+TGG | - | chr5.1:42282026-42282045 | None:intergenic | 45.0% | |
| ATGCCGCAATTAAGGCCTAT+AGG | - | chr5.1:42283856-42283875 | None:intergenic | 45.0% | |
| ATTAGAGACCCGGAAGCAAT+GGG | + | chr5.1:42281760-42281779 | MS.gene80136:intron | 45.0% | |
| CAACACAGTACGTACATGCT+AGG | - | chr5.1:42283808-42283827 | None:intergenic | 45.0% | |
| CAACAGCAGCAAGTCAAACT+GGG | + | chr5.1:42283180-42283199 | MS.gene80136:CDS | 45.0% | |
| CCACCTATAGGCCTTAATTG+CGG | + | chr5.1:42283850-42283869 | MS.gene80136:intron | 45.0% | |
| CTAGCATGTACGTACTGTGT+TGG | + | chr5.1:42283806-42283825 | MS.gene80136:intron | 45.0% | |
| CTGTATATGAGTAGTGCAGG+AGG | + | chr5.1:42283057-42283076 | MS.gene80136:CDS | 45.0% | |
| GATGGCCAAAAATGGTGTGA+AGG | + | chr5.1:42284398-42284417 | MS.gene80136:CDS | 45.0% | |
| GCAAGTCAAACTGGGTGATA+AGG | + | chr5.1:42283188-42283207 | MS.gene80136:CDS | 45.0% | |
| GCGCCGAAAAATACATGATC+AGG | + | chr5.1:42282945-42282964 | MS.gene80136:CDS | 45.0% | |
| GCTCAAAGATGCCGCAATTA+AGG | - | chr5.1:42283864-42283883 | None:intergenic | 45.0% | |
| GGTGAAGAAACACCCATGAA+TGG | + | chr5.1:42281838-42281857 | MS.gene80136:intron | 45.0% | |
| GTCACAGATTTGGGAGTAAC+CGG | - | chr5.1:42283264-42283283 | None:intergenic | 45.0% | |
| GTGAGCTTAGCTCAGTTTGT+AGG | + | chr5.1:42283715-42283734 | MS.gene80136:intron | 45.0% | |
| TACCATCTCTAGTAGGAGAC+TGG | - | chr5.1:42284547-42284566 | None:intergenic | 45.0% | |
| TAGACGTTCTTGTGCCTACT+GGG | + | chr5.1:42281929-42281948 | MS.gene80136:intron | 45.0% | |
| TATATGAGTAGTGCAGGAGG+AGG | + | chr5.1:42283060-42283079 | MS.gene80136:CDS | 45.0% | |
| TATATGCAGACCATCTTGGC+TGG | + | chr5.1:42281013-42281032 | MS.gene80136:intron | 45.0% | |
| TCCAGACAATTCATCTGAGG+AGG | - | chr5.1:42284278-42284297 | None:intergenic | 45.0% | |
| TCGCAAGCCTAACACATTGT+GGG | - | chr5.1:42282025-42282044 | None:intergenic | 45.0% | |
| TGACTTAGTCGAAACTCCGA+AGG | - | chr5.1:42284722-42284741 | None:intergenic | 45.0% | |
| TGGCACTTGCTTGCAAAATG+TGG | + | chr5.1:42282671-42282690 | MS.gene80136:CDS | 45.0% | |
| TTAGACGTTCTTGTGCCTAC+TGG | + | chr5.1:42281928-42281947 | MS.gene80136:intron | 45.0% | |
| TTGTCGTTCTTGTGCCTACT+GGG | + | chr5.1:42281883-42281902 | MS.gene80136:intron | 45.0% | |
| TTTGTCGTTCTTGTGCCTAC+TGG | + | chr5.1:42281882-42281901 | MS.gene80136:intron | 45.0% | |
| ! | AGGAGTGTAACATAGCCACT+TGG | + | chr5.1:42284115-42284134 | MS.gene80136:intron | 45.0% |
| ! | CACAAACCTGGCAAGTTTTG+AGG | - | chr5.1:42282779-42282798 | None:intergenic | 45.0% |
| !! | CTGATGATGGCCAAAAATGG+TGG | + | chr5.1:42284393-42284412 | MS.gene80136:CDS | 45.0% |
| !!! | CACCATTTTTGGCCATCATC+AGG | - | chr5.1:42284395-42284414 | None:intergenic | 45.0% |
| !!! | CTTTTTTTTGGTGATGGCCG+GGG | - | chr5.1:42283777-42283796 | None:intergenic | 45.0% |
| AAGGTTTACCTGGGGAATGG+CGG | - | chr5.1:42283346-42283365 | None:intergenic | 50.0% | |
| AGCCAGTCTCCTACTAGAGA+TGG | + | chr5.1:42284542-42284561 | MS.gene80136:CDS | 50.0% | |
| AGGCTCAGGAGTCACAGATT+TGG | - | chr5.1:42283274-42283293 | None:intergenic | 50.0% | |
| CAAACTGAGCTAAGCTCACG+AGG | - | chr5.1:42283714-42283733 | None:intergenic | 50.0% | |
| CAATTCATCTGAGGAGGCCT+CGG | - | chr5.1:42284272-42284291 | None:intergenic | 50.0% | |
| CAATTTGGGCAAGCCTTGGT+AGG | - | chr5.1:42281119-42281138 | None:intergenic | 50.0% | |
| CACAGTACGTACATGCTAGG+AGG | - | chr5.1:42283805-42283824 | None:intergenic | 50.0% | |
| CCAACAGCAGCAAGTCAAAC+TGG | + | chr5.1:42283179-42283198 | MS.gene80136:CDS | 50.0% | |
| CCGCAATTAAGGCCTATAGG+TGG | - | chr5.1:42283853-42283872 | None:intergenic | 50.0% | |
| CTGACAATTTGGGCAAGCCT+TGG | - | chr5.1:42281123-42281142 | None:intergenic | 50.0% | |
| GCCTCCTCAGATGAATTGTC+TGG | + | chr5.1:42284274-42284293 | MS.gene80136:intron | 50.0% | |
| GGCTCAGGAGTCACAGATTT+GGG | - | chr5.1:42283273-42283292 | None:intergenic | 50.0% | |
| GTGTTAGGCTTGCGATAGCA+GGG | + | chr5.1:42282030-42282049 | MS.gene80136:intron | 50.0% | |
| TGTGTTAGGCTTGCGATAGC+AGG | + | chr5.1:42282029-42282048 | MS.gene80136:intron | 50.0% | |
| TGTTAGGCTTGCGATAGCAG+GGG | + | chr5.1:42282031-42282050 | MS.gene80136:intron | 50.0% | |
| TTAGAGACCCGGAAGCAATG+GGG | + | chr5.1:42281761-42281780 | MS.gene80136:intron | 50.0% | |
| ! | AGGACCAGAGCATCTGAAGA+AGG | + | chr5.1:42284616-42284635 | MS.gene80136:CDS | 50.0% |
| ! | CTTTTGTCCACCAGCCAAGA+TGG | - | chr5.1:42281026-42281045 | None:intergenic | 50.0% |
| ! | GCCTAACACATTGTGGGCTA+TGG | - | chr5.1:42282019-42282038 | None:intergenic | 50.0% |
| ! | TTGACACCTTTTGGCAAGCC+AGG | - | chr5.1:42282623-42282642 | None:intergenic | 50.0% |
| !! | AGGGGTTTTTGAGCACCATG+TGG | + | chr5.1:42282049-42282068 | MS.gene80136:intron | 50.0% |
| !! | CCAGTTTGACTTGCTGCTGT+TGG | - | chr5.1:42283182-42283201 | None:intergenic | 50.0% |
| !! | GGGGTTTTTGAGCACCATGT+GGG | + | chr5.1:42282050-42282069 | MS.gene80136:intron | 50.0% |
| !!! | AGGATTTTGGTGACGTTCGC+TGG | + | chr5.1:42282965-42282984 | MS.gene80136:CDS | 50.0% |
| AAGCTCACGAGGACGCTATG+AGG | - | chr5.1:42283703-42283722 | None:intergenic | 55.0% | |
| AATGTCCGGGGTTCAAACCC+CGG | + | chr5.1:42283757-42283776 | MS.gene80136:intron | 55.0% | |
| AGCTCACGAGGACGCTATGA+GGG | - | chr5.1:42283702-42283721 | None:intergenic | 55.0% | |
| AGGTTTACCTGGGGAATGGC+GGG | - | chr5.1:42283345-42283364 | None:intergenic | 55.0% | |
| ATGCAGACCATCTTGGCTGG+TGG | + | chr5.1:42281016-42281035 | MS.gene80136:intron | 55.0% | |
| GACGTTCGCTGGCACAAAAC+TGG | + | chr5.1:42282976-42282995 | MS.gene80136:CDS | 55.0% | |
| ! | TGCATCGGGAGCATGTGATC+TGG | + | chr5.1:42281070-42281089 | MS.gene80136:CDS | 55.0% |
| ! | GAGTGGCCTGGCTTGCCAAA+AGG | + | chr5.1:42282614-42282633 | MS.gene80136:CDS | 60.0% |
| AGACACACCCGCCATTCCCC+AGG | + | chr5.1:42283335-42283354 | MS.gene80136:CDS | 65.0% | |
| GATGGCCGGGGTTTGAACCC+CGG | - | chr5.1:42283765-42283784 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42280337 | 42284881 | 42280337 | ID=MS.gene80136 |
| chr5.1 | mRNA | 42280337 | 42284881 | 42280337 | ID=MS.gene80136.t1;Parent=MS.gene80136 |
| chr5.1 | exon | 42280337 | 42280344 | 42280337 | ID=MS.gene80136.t1.exon1;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42280337 | 42280344 | 42280337 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| chr5.1 | exon | 42281022 | 42281163 | 42281022 | ID=MS.gene80136.t1.exon2;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42281022 | 42281163 | 42281022 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| chr5.1 | exon | 42282605 | 42282791 | 42282605 | ID=MS.gene80136.t1.exon3;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42282605 | 42282791 | 42282605 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| chr5.1 | exon | 42282872 | 42283356 | 42282872 | ID=MS.gene80136.t1.exon4;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42282872 | 42283356 | 42282872 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| chr5.1 | exon | 42284284 | 42284745 | 42284284 | ID=MS.gene80136.t1.exon5;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42284284 | 42284745 | 42284284 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| chr5.1 | exon | 42284825 | 42284881 | 42284825 | ID=MS.gene80136.t1.exon6;Parent=MS.gene80136.t1 |
| chr5.1 | CDS | 42284825 | 42284881 | 42284825 | ID=cds.MS.gene80136.t1;Parent=MS.gene80136.t1 |
| Gene Sequence |
| Protein sequence |
