Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80156.t1 | XP_003603254.2 | 97.6 | 949 | 23 | 0 | 1 | 949 | 1 | 949 | 0.00E+00 | 1790 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80156.t1 | Q3S4A7 | 58.8 | 965 | 333 | 14 | 1 | 948 | 5 | 921 | 6.5e-296 | 1018.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80156.t1 | G7J964 | 97.6 | 949 | 23 | 0 | 1 | 949 | 1 | 949 | 0.0e+00 | 1790.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80156.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80156.t1 | MTR_3g105590 | 97.576 | 949 | 23 | 0 | 1 | 949 | 1 | 949 | 0.0 | 1921 |
| MS.gene80156.t1 | MTR_1g013360 | 70.010 | 1017 | 226 | 17 | 1 | 948 | 5 | 1011 | 0.0 | 1372 |
| MS.gene80156.t1 | MTR_1g014670 | 75.377 | 398 | 87 | 3 | 39 | 435 | 2 | 389 | 0.0 | 605 |
| MS.gene80156.t1 | MTR_3g085130 | 28.268 | 612 | 375 | 14 | 373 | 949 | 450 | 1032 | 2.30e-50 | 193 |
| MS.gene80156.t1 | MTR_8g080770 | 36.232 | 276 | 165 | 4 | 373 | 646 | 286 | 552 | 5.39e-39 | 157 |
| MS.gene80156.t1 | MTR_8g080770 | 31.034 | 145 | 80 | 2 | 805 | 948 | 733 | 858 | 3.56e-15 | 80.9 |
| MS.gene80156.t1 | MTR_8g080770 | 36.232 | 276 | 165 | 4 | 373 | 646 | 395 | 661 | 7.87e-39 | 157 |
| MS.gene80156.t1 | MTR_8g080770 | 31.034 | 145 | 80 | 2 | 805 | 948 | 842 | 967 | 4.45e-15 | 80.5 |
| MS.gene80156.t1 | MTR_3g085130 | 35.395 | 291 | 177 | 5 | 373 | 660 | 240 | 522 | 3.96e-38 | 154 |
| MS.gene80156.t1 | MTR_3g085130 | 31.333 | 150 | 82 | 3 | 801 | 949 | 693 | 822 | 7.53e-15 | 79.7 |
| MS.gene80156.t1 | MTR_8g106150 | 34.564 | 298 | 174 | 5 | 373 | 652 | 143 | 437 | 1.07e-35 | 145 |
| MS.gene80156.t1 | MTR_8g106150 | 32.877 | 146 | 85 | 3 | 805 | 949 | 619 | 752 | 4.69e-17 | 86.7 |
| MS.gene80156.t1 | MTR_8g106150 | 34.564 | 298 | 174 | 5 | 373 | 652 | 386 | 680 | 1.84e-35 | 146 |
| MS.gene80156.t1 | MTR_8g106150 | 32.877 | 146 | 85 | 3 | 805 | 949 | 862 | 995 | 4.96e-17 | 87.0 |
| MS.gene80156.t1 | MTR_5g097410 | 34.043 | 282 | 169 | 7 | 373 | 646 | 620 | 892 | 3.44e-35 | 145 |
| MS.gene80156.t1 | MTR_5g097410 | 35.115 | 131 | 77 | 2 | 805 | 934 | 1075 | 1198 | 1.21e-14 | 79.3 |
| MS.gene80156.t1 | MTR_4g031150 | 31.778 | 343 | 179 | 11 | 331 | 665 | 349 | 644 | 3.93e-34 | 141 |
| MS.gene80156.t1 | MTR_7g109150 | 34.130 | 293 | 146 | 8 | 375 | 664 | 349 | 597 | 9.31e-33 | 135 |
| MS.gene80156.t1 | MTR_8g075340 | 31.250 | 272 | 166 | 5 | 373 | 642 | 474 | 726 | 5.25e-27 | 119 |
| MS.gene80156.t1 | MTR_8g075340 | 30.337 | 178 | 81 | 4 | 785 | 944 | 1010 | 1162 | 3.84e-13 | 74.3 |
| MS.gene80156.t1 | MTR_5g022470 | 32.014 | 278 | 168 | 5 | 373 | 648 | 512 | 770 | 1.60e-25 | 114 |
| MS.gene80156.t1 | MTR_5g022470 | 32.014 | 278 | 168 | 5 | 373 | 648 | 512 | 770 | 1.60e-25 | 114 |
| MS.gene80156.t1 | MTR_1g090850 | 28.571 | 315 | 184 | 11 | 344 | 646 | 363 | 648 | 8.99e-19 | 92.4 |
| MS.gene80156.t1 | MTR_1g087140 | 28.060 | 335 | 188 | 14 | 335 | 646 | 362 | 666 | 1.68e-17 | 88.6 |
| MS.gene80156.t1 | MTR_1g079790 | 26.531 | 196 | 128 | 5 | 331 | 515 | 327 | 517 | 9.33e-12 | 69.3 |
| MS.gene80156.t1 | MTR_1g079790 | 26.531 | 196 | 128 | 5 | 331 | 515 | 327 | 517 | 1.44e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80156.t1 | AT5G10720 | 58.264 | 968 | 333 | 14 | 1 | 948 | 5 | 921 | 0.0 | 1090 |
| MS.gene80156.t1 | AT1G27320 | 37.545 | 277 | 158 | 5 | 373 | 646 | 453 | 717 | 2.56e-40 | 162 |
| MS.gene80156.t1 | AT1G27320 | 30.345 | 145 | 93 | 2 | 805 | 948 | 891 | 1028 | 5.76e-15 | 80.1 |
| MS.gene80156.t1 | AT5G10680 | 46.429 | 168 | 83 | 4 | 1 | 168 | 1 | 161 | 1.59e-38 | 144 |
| MS.gene80156.t1 | AT5G10680 | 46.429 | 168 | 83 | 4 | 1 | 168 | 1 | 161 | 1.59e-38 | 144 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 475 | 754 | 1.69e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 918 | 1057 | 1.81e-13 | 75.5 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 464 | 743 | 1.72e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 907 | 1046 | 1.73e-13 | 75.5 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.93e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 895 | 1034 | 1.64e-13 | 75.5 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.93e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 895 | 1034 | 1.64e-13 | 75.5 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.93e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 895 | 1034 | 1.64e-13 | 75.5 |
| MS.gene80156.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.93e-36 | 149 |
| MS.gene80156.t1 | AT2G01830 | 31.447 | 159 | 88 | 4 | 778 | 934 | 895 | 1034 | 1.64e-13 | 75.5 |
| MS.gene80156.t1 | AT5G35750 | 36.879 | 282 | 160 | 8 | 373 | 646 | 590 | 861 | 1.19e-35 | 147 |
| MS.gene80156.t1 | AT5G35750 | 35.115 | 131 | 77 | 3 | 805 | 934 | 1036 | 1159 | 4.24e-13 | 74.3 |
| MS.gene80156.t1 | AT2G40940 | 32.110 | 327 | 173 | 9 | 330 | 648 | 298 | 583 | 1.35e-29 | 125 |
| MS.gene80156.t1 | AT2G17820 | 31.655 | 278 | 169 | 4 | 373 | 648 | 501 | 759 | 1.62e-27 | 121 |
| MS.gene80156.t1 | AT1G66340 | 27.628 | 333 | 186 | 7 | 331 | 655 | 299 | 584 | 2.13e-27 | 119 |
| MS.gene80156.t1 | AT2G47430 | 29.022 | 317 | 197 | 10 | 341 | 646 | 366 | 665 | 9.84e-23 | 105 |
| MS.gene80156.t1 | AT5G26594 | 33.099 | 142 | 61 | 4 | 802 | 940 | 16 | 126 | 1.99e-11 | 63.2 |
Find 163 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGCTCCTGTTGTTAT+TGG | 0.154518 | 3.4:+92226647 | MS.gene80156:CDS |
| CTCACAAATTTCACAGAAAA+AGG | 0.181280 | 3.4:+92226149 | MS.gene80156:CDS |
| ATATAGAAACCGGTCGTTTA+TGG | 0.218811 | 3.4:-92226340 | None:intergenic |
| CAATTCCAACCTCCCAATTT+AGG | 0.220850 | 3.4:+92229351 | MS.gene80156:CDS |
| CAATACATAGTTTATTTAAA+AGG | 0.226595 | 3.4:+92228900 | MS.gene80156:CDS |
| TAAACGACCGGTTTCTATAT+TGG | 0.230609 | 3.4:+92226343 | MS.gene80156:CDS |
| GCTAAGGAAGTTGGAGATAT+TGG | 0.232044 | 3.4:+92226283 | MS.gene80156:CDS |
| TGGATGATATTTATGATATA+TGG | 0.239075 | 3.4:+92226363 | MS.gene80156:CDS |
| AGAGACTAGATGGCCTAAAT+TGG | 0.246731 | 3.4:-92229364 | None:intergenic |
| GCTTGAAGACCATCCATAAT+TGG | 0.260574 | 3.4:-92230033 | None:intergenic |
| GAGATAAGATCTCCACTTTC+TGG | 0.266189 | 3.4:+92227438 | MS.gene80156:CDS |
| CAATAACAACAGGAGCATTT+TGG | 0.278884 | 3.4:-92226646 | None:intergenic |
| CATCCTGTCTTTGTTTGTTT+AGG | 0.281414 | 3.4:-92226256 | None:intergenic |
| GCCTTCATTTGTAAATTTGA+TGG | 0.281976 | 3.4:-92228445 | None:intergenic |
| AAACTTCCCTCTTAAAATCT+TGG | 0.284644 | 3.4:-92226876 | None:intergenic |
| AACATAGATGTTGTCAATAA+TGG | 0.290513 | 3.4:+92229783 | MS.gene80156:CDS |
| TACCTCTCTAGGTCGAAATT+TGG | 0.290931 | 3.4:-92227974 | None:intergenic |
| TTTAGGCTTTGATATGGATT+TGG | 0.311499 | 3.4:-92229691 | None:intergenic |
| GGATGTGTGCATGCCAATTA+TGG | 0.314902 | 3.4:+92230020 | MS.gene80156:intron |
| AACATATCTTGATCATTTCC+TGG | 0.315890 | 3.4:-92226065 | None:intergenic |
| GGGTAGACTTTGCTCGATTC+CGG | 0.321938 | 3.4:-92230112 | None:intergenic |
| CATGTTGTCATCTGGAGATT+TGG | 0.337835 | 3.4:+92227530 | MS.gene80156:CDS |
| ATCTGCTACATGTCCTTCTA+TGG | 0.343030 | 3.4:-92228046 | None:intergenic |
| GATCTTTCCAAGGTTGAATC+AGG | 0.345581 | 3.4:+92227579 | MS.gene80156:CDS |
| GTGAGTTCTGTTTGCTCCAC+TGG | 0.347782 | 3.4:-92229388 | None:intergenic |
| AAGAATCTGCAATACCATTC+TGG | 0.355194 | 3.4:-92229605 | None:intergenic |
| TTGGCTCTTGCACAACATAA+AGG | 0.355853 | 3.4:-92228482 | None:intergenic |
| AGTTGATGATTCAAATTCAT+TGG | 0.362860 | 3.4:+92229506 | MS.gene80156:CDS |
| ATGGGAATTCGCTTTGTAGA+TGG | 0.376345 | 3.4:-92230159 | None:intergenic |
| AGAGTGTGTTGAGGATATTA+TGG | 0.378342 | 3.4:+92225968 | MS.gene80156:CDS |
| TTTCACTACATTCACAGAAA+TGG | 0.384669 | 3.4:-92228553 | None:intergenic |
| GTAGATCACGCTCGAAAGTA+TGG | 0.384965 | 3.4:+92228938 | MS.gene80156:CDS |
| CTTTCGAGGAAACAGGCAAT+TGG | 0.386287 | 3.4:+92230073 | MS.gene80156:CDS |
| CATTCGTAATTGCAGGTCAT+TGG | 0.389666 | 3.4:+92228208 | MS.gene80156:intron |
| CAGAAAATATTAACCATAGA+AGG | 0.390045 | 3.4:+92228033 | MS.gene80156:CDS |
| AATAAAACCATTCACATAAC+AGG | 0.395118 | 3.4:+92227270 | MS.gene80156:CDS |
| TGCAGATTCTTCTCAGCATA+TGG | 0.396404 | 3.4:+92229617 | MS.gene80156:CDS |
| TTCAAGCAACAAAACTAATT+CGG | 0.398524 | 3.4:+92230049 | MS.gene80156:CDS |
| AAATGTGTCATCACCTCTAT+AGG | 0.404208 | 3.4:-92228075 | None:intergenic |
| CTAAATTGGGAGGTTGGAAT+TGG | 0.404734 | 3.4:-92229350 | None:intergenic |
| CAATCAACCTGTTATGTGAA+TGG | 0.404844 | 3.4:-92227277 | None:intergenic |
| ATTCGGTCTTTCGAGGAAAC+AGG | 0.407480 | 3.4:+92230066 | MS.gene80156:CDS |
| TCCTGTTGTTATTGGCCATC+AGG | 0.408491 | 3.4:+92226655 | MS.gene80156:CDS |
| GCCATCAAATTTACAAATGA+AGG | 0.414139 | 3.4:+92228444 | MS.gene80156:CDS |
| ACGTCAGCTCCAATATCTTC+TGG | 0.420722 | 3.4:-92226017 | None:intergenic |
| TTTACAAATGAAGGCAAAGT+AGG | 0.421277 | 3.4:+92228453 | MS.gene80156:CDS |
| GTGTCTAGCAAAGAACAAAA+TGG | 0.421334 | 3.4:+92229198 | MS.gene80156:CDS |
| TATACTCCCAATGTTTCATA+AGG | 0.422050 | 3.4:-92226190 | None:intergenic |
| TTCTGCATAGGTTGAGTTGA+TGG | 0.425115 | 3.4:+92229161 | MS.gene80156:intron |
| TTGGATGTCATGTTGTCATC+TGG | 0.426050 | 3.4:+92227522 | MS.gene80156:CDS |
| AGCAAGGCAGGTGAAACAAT+TGG | 0.429476 | 3.4:+92226991 | MS.gene80156:CDS |
| ATCGAGCATTCACTCTTAAC+CGG | 0.430609 | 3.4:-92228612 | None:intergenic |
| CAAGCGATCGAGACCTTGTA+TGG | 0.430770 | 3.4:-92229243 | None:intergenic |
| TCACCTGCCTTGCTGAAGAC+AGG | 0.433507 | 3.4:-92226982 | None:intergenic |
| GCTCGAAAGTATGGTGGGAC+AGG | 0.435553 | 3.4:+92228947 | MS.gene80156:CDS |
| ATATCTTCTGGCCACATTGA+AGG | 0.436714 | 3.4:-92226005 | None:intergenic |
| AGCGTACAAAAGATTAGTTC+AGG | 0.440570 | 3.4:+92228522 | MS.gene80156:CDS |
| TCAATGTGGCCAGAAGATAT+TGG | 0.443354 | 3.4:+92226008 | MS.gene80156:CDS |
| AAGTATGGTGGGACAGGGCT+AGG | 0.445638 | 3.4:+92228953 | MS.gene80156:CDS |
| GGATGTTGAGCTAAGGAAGT+TGG | 0.448739 | 3.4:+92226274 | MS.gene80156:CDS |
| ACTTTCTGGTGTTGTTAGCA+TGG | 0.454583 | 3.4:+92227452 | MS.gene80156:CDS |
| ATTCACTGGATCTGGTGTTA+AGG | 0.458619 | 3.4:+92226849 | MS.gene80156:CDS |
| TCCAATGACAACATATCAAA+AGG | 0.462175 | 3.4:+92229474 | MS.gene80156:CDS |
| ATATCATCCAATATAGAAAC+CGG | 0.463376 | 3.4:-92226350 | None:intergenic |
| ATTACCTCCTCATGTAAACT+TGG | 0.464486 | 3.4:-92226716 | None:intergenic |
| TCCTGATGGCCAATAACAAC+AGG | 0.466242 | 3.4:-92226656 | None:intergenic |
| CTCCACTGGAAGAGACTAGA+TGG | 0.466828 | 3.4:-92229374 | None:intergenic |
| GGTTGTGATGTATATGATAC+AGG | 0.469429 | 3.4:+92228687 | MS.gene80156:CDS |
| AAAACTAATTCGGTCTTTCG+AGG | 0.469760 | 3.4:+92230059 | MS.gene80156:CDS |
| ACTAGCAATATGCAAACAAC+TGG | 0.471382 | 3.4:+92228976 | MS.gene80156:CDS |
| TTTCGAGGAAACAGGCAATT+GGG | 0.473287 | 3.4:+92230074 | MS.gene80156:CDS |
| AGCCTACCTTATGAAACATT+GGG | 0.475348 | 3.4:+92226184 | MS.gene80156:CDS |
| ATTTGAGAGAGTTCTTCAAC+AGG | 0.477140 | 3.4:-92226587 | None:intergenic |
| GATGCACTTGGAAAAGTTGT+TGG | 0.486450 | 3.4:+92226487 | MS.gene80156:CDS |
| GAGACTAGATGGCCTAAATT+GGG | 0.487886 | 3.4:-92229363 | None:intergenic |
| TCTTGTTATCTTCAACAAGA+AGG | 0.489724 | 3.4:-92229716 | None:intergenic |
| ACCTCAACTCTTTGTCCTGA+TGG | 0.491700 | 3.4:-92226670 | None:intergenic |
| GAACCTGTCTTCAGCAAGGC+AGG | 0.495617 | 3.4:+92226979 | MS.gene80156:CDS |
| ATGACCCAACTGTTTCATCA+TGG | 0.497053 | 3.4:-92229760 | None:intergenic |
| CACATTCATACTTCCATACA+AGG | 0.497367 | 3.4:+92229230 | MS.gene80156:CDS |
| TAGCCTACCTTATGAAACAT+TGG | 0.501009 | 3.4:+92226183 | MS.gene80156:CDS |
| TTTCCAACCTGATTCAACCT+TGG | 0.502835 | 3.4:-92227586 | None:intergenic |
| GGGAATGGATGTAACAGATC+AGG | 0.507588 | 3.4:+92227026 | MS.gene80156:CDS |
| ATAATATTCATAATCTCGAT+TGG | 0.508357 | 3.4:-92230133 | None:intergenic |
| CAAGGAGCAAAGACAGCTGT+TGG | 0.510482 | 3.4:+92227503 | MS.gene80156:CDS |
| TGGAATCAATTACATGGGAA+TGG | 0.513449 | 3.4:+92227011 | MS.gene80156:CDS |
| GTCGAAATATTCACTGGATC+TGG | 0.516463 | 3.4:+92226841 | MS.gene80156:CDS |
| AGTATGATACTGTTGTGTAC+TGG | 0.516963 | 3.4:+92226453 | MS.gene80156:CDS |
| GATGGCCTAAATTGGGAGGT+TGG | 0.523038 | 3.4:-92229356 | None:intergenic |
| AGTGTATTGAACAATACTTA+AGG | 0.523347 | 3.4:+92230464 | MS.gene80156:CDS |
| AACAATTGGAATCAATTACA+TGG | 0.523571 | 3.4:+92227005 | MS.gene80156:CDS |
| AGCAGATGATGTACCTATAG+AGG | 0.523933 | 3.4:+92228062 | MS.gene80156:CDS |
| CAACCTAAACAAACAAAGAC+AGG | 0.527200 | 3.4:+92226253 | MS.gene80156:CDS |
| ATTGGAAGAACATAGATTTG+AGG | 0.528522 | 3.4:+92226301 | MS.gene80156:CDS |
| CTGTGTAGGAGTTATGAAGT+TGG | 0.528994 | 3.4:+92227945 | MS.gene80156:intron |
| ATGCTAACAACACCAGAAAG+TGG | 0.529641 | 3.4:-92227450 | None:intergenic |
| TCTGCATAGGTTGAGTTGAT+GGG | 0.531045 | 3.4:+92229162 | MS.gene80156:intron |
| CTTTCCAAGTTTACATGAGG+AGG | 0.532167 | 3.4:+92226712 | MS.gene80156:CDS |
| ACTGATGTCGAAATATTCAC+TGG | 0.534032 | 3.4:+92226835 | MS.gene80156:CDS |
| ACATGCTTTACTACCTCTCT+AGG | 0.534889 | 3.4:-92227985 | None:intergenic |
| GATGTATATGATACAGGCAT+TGG | 0.535140 | 3.4:+92228693 | MS.gene80156:CDS |
| CTCAGATGAATTCTCAGACA+TGG | 0.538037 | 3.4:+92229281 | MS.gene80156:CDS |
| CTAGTGCTTACCGCAACAAT+GGG | 0.538212 | 3.4:-92230177 | None:intergenic |
| TAATATTCATAATCTCGATT+GGG | 0.540994 | 3.4:-92230132 | None:intergenic |
| GGCCATCTAGTCTCTTCCAG+TGG | 0.542757 | 3.4:+92229372 | MS.gene80156:CDS |
| ACAATCCATGATGAAACAGT+TGG | 0.545179 | 3.4:+92229755 | MS.gene80156:CDS |
| TCTAGTGCTTACCGCAACAA+TGG | 0.547183 | 3.4:-92230178 | None:intergenic |
| TAATGATGAGTGTAGATCTC+CGG | 0.548746 | 3.4:+92228593 | MS.gene80156:CDS |
| GAAACATTGGGAGTATAAGC+AGG | 0.551772 | 3.4:+92226196 | MS.gene80156:CDS |
| TGGAGCAGAGGCGGTGCGTG+CGG | 0.557895 | 3.4:+92229803 | MS.gene80156:CDS |
| TTACAAATGAAGGCAAAGTA+GGG | 0.560913 | 3.4:+92228454 | MS.gene80156:CDS |
| TATGTTGTCATTGGAAGTAG+AGG | 0.564452 | 3.4:-92229466 | None:intergenic |
| TGACATACTTGATCTTTCCA+AGG | 0.565536 | 3.4:+92227569 | MS.gene80156:CDS |
| TACATATGACCTGGTTCTGA+TGG | 0.568683 | 3.4:+92229836 | MS.gene80156:CDS |
| GCACTTGGAAAAGTTGTTGG+AGG | 0.568733 | 3.4:+92226490 | MS.gene80156:CDS |
| GAAACAGCGAGCGATGCACT+TGG | 0.570341 | 3.4:+92226475 | MS.gene80156:CDS |
| CAATCCATGATGAAACAGTT+GGG | 0.571813 | 3.4:+92229756 | MS.gene80156:CDS |
| AGATAACAAGATTAACATCA+TGG | 0.572107 | 3.4:+92229728 | MS.gene80156:CDS |
| CATTATATAGATGATGTTTG+TGG | 0.574874 | 3.4:-92229569 | None:intergenic |
| TTCCACCACAAAACTTGACA+AGG | 0.576173 | 3.4:+92227485 | MS.gene80156:CDS |
| TATGAGAGCAAAGAAAGTGC+TGG | 0.576593 | 3.4:+92227401 | MS.gene80156:CDS |
| GGAGTATAAGCAGGCGAGCG+TGG | 0.578452 | 3.4:+92226205 | MS.gene80156:CDS |
| ATGATGCTGCGGCTGTCTGA+AGG | 0.579152 | 3.4:-92228008 | None:intergenic |
| CCTCATGTAAACTTGGAAAG+TGG | 0.579172 | 3.4:-92226709 | None:intergenic |
| AGATTTGAGGACGAAAGATA+CGG | 0.579302 | 3.4:+92226314 | MS.gene80156:CDS |
| ATCTATATAATGCTCATGCA+TGG | 0.579361 | 3.4:+92229580 | MS.gene80156:CDS |
| TCTGATGATACAACAACAGA+AGG | 0.580893 | 3.4:+92229321 | MS.gene80156:CDS |
| CCACTTTCCAAGTTTACATG+AGG | 0.590769 | 3.4:+92226709 | MS.gene80156:CDS |
| AAAGACAGGATGTTGAGCTA+AGG | 0.596277 | 3.4:+92226267 | MS.gene80156:CDS |
| CTCGAAAGTATGGTGGGACA+GGG | 0.596487 | 3.4:+92228948 | MS.gene80156:CDS |
| TACCAAATTTCGACCTAGAG+AGG | 0.598602 | 3.4:+92227972 | MS.gene80156:CDS |
| GCTCATGCATGGTTCCAGAA+TGG | 0.599781 | 3.4:+92229591 | MS.gene80156:CDS |
| AAGAGTGAATGCTCGATGAA+CGG | 0.601254 | 3.4:+92228618 | MS.gene80156:CDS |
| CAGTTCAATATAGAAAAGCC+AGG | 0.602854 | 3.4:+92226047 | MS.gene80156:CDS |
| GAAGATATTGGAGCTGACGT+TGG | 0.611663 | 3.4:+92226020 | MS.gene80156:CDS |
| GATACAGGCATTGGAATACC+AGG | 0.612622 | 3.4:+92228702 | MS.gene80156:CDS |
| AAAGCGAATTCCCATTGTTG+CGG | 0.612866 | 3.4:+92230167 | MS.gene80156:CDS |
| CTTCTGGCCACATTGAAGGA+AGG | 0.613983 | 3.4:-92226001 | None:intergenic |
| AATGCAACAACAGTGTGGAT+AGG | 0.617754 | 3.4:+92228666 | MS.gene80156:CDS |
| ACAATTGGAATCAATTACAT+GGG | 0.619533 | 3.4:+92227006 | MS.gene80156:CDS |
| ATCACGCTCGAAAGTATGGT+GGG | 0.619892 | 3.4:+92228942 | MS.gene80156:CDS |
| CATAAATTACCATCAGAACC+AGG | 0.627013 | 3.4:-92229845 | None:intergenic |
| TGTAGAACCTGTCTTCAGCA+AGG | 0.629088 | 3.4:+92226975 | MS.gene80156:CDS |
| GTGTGCATGCCAATTATGGA+TGG | 0.635228 | 3.4:+92230024 | MS.gene80156:CDS |
| AAATTCTCACAAATTTAACC+AGG | 0.643959 | 3.4:+92228251 | MS.gene80156:CDS |
| CTCCCAATGTTTCATAAGGT+AGG | 0.643980 | 3.4:-92226186 | None:intergenic |
| GCATAGGTTGAGTTGATGGG+AGG | 0.644228 | 3.4:+92229165 | MS.gene80156:intron |
| TCAGCGCTGTACATATGACC+TGG | 0.644473 | 3.4:+92229827 | MS.gene80156:CDS |
| ATACGGAGGCCATAAACGAC+CGG | 0.646119 | 3.4:+92226331 | MS.gene80156:CDS |
| AGATTCTTCTCAGCATATGG+TGG | 0.646433 | 3.4:+92229620 | MS.gene80156:CDS |
| GATTGCTGTTCAGAAAGCAA+AGG | 0.648370 | 3.4:+92227236 | MS.gene80156:CDS |
| TGTCAATAATGGAGCAGAGG+CGG | 0.649552 | 3.4:+92229794 | MS.gene80156:CDS |
| GAAAATCCACAAAATTTGTG+CGG | 0.650564 | 3.4:-92229423 | None:intergenic |
| ATGTTGTCATTGGAAGTAGA+GGG | 0.650718 | 3.4:-92229465 | None:intergenic |
| GATCACGCTCGAAAGTATGG+TGG | 0.655464 | 3.4:+92228941 | MS.gene80156:CDS |
| GCCATCAGGACAAAGAGTTG+AGG | 0.656169 | 3.4:+92226669 | MS.gene80156:CDS |
| TGTTGTCAATAATGGAGCAG+AGG | 0.659976 | 3.4:+92229791 | MS.gene80156:CDS |
| TTGAAGTCCTTCCTTCAATG+TGG | 0.668513 | 3.4:+92225994 | MS.gene80156:CDS |
| ACTAGATGGCCTAAATTGGG+AGG | 0.678417 | 3.4:-92229360 | None:intergenic |
| ACTCAAATGCAACAACAGTG+TGG | 0.687455 | 3.4:+92228661 | MS.gene80156:CDS |
| CTCGATGAACGGAGACACAG+AGG | 0.693267 | 3.4:+92228629 | MS.gene80156:CDS |
| GTATGGAAGTATGAATGTGA+AGG | 0.713387 | 3.4:-92229226 | None:intergenic |
| TTTGAGGACGAAAGATACGG+AGG | 0.715280 | 3.4:+92226317 | MS.gene80156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAACTTATCTAT+TGG | + | chr3.4:92227650-92227669 | MS.gene80156:intron | 10.0% |
| !!! | CTTCTTATTTTTTAAATTTT+TGG | + | chr3.4:92227136-92227155 | MS.gene80156:intron | 10.0% |
| !!! | TTCTATTATATTTTGTTATA+GGG | + | chr3.4:92227786-92227805 | MS.gene80156:intron | 10.0% |
| !!! | TTTCTATTATATTTTGTTAT+AGG | + | chr3.4:92227785-92227804 | MS.gene80156:intron | 10.0% |
| !!! | TTTTCTAATTAATATGTTAA+TGG | - | chr3.4:92230213-92230232 | None:intergenic | 10.0% |
| !! | CAATACATAGTTTATTTAAA+AGG | + | chr3.4:92228900-92228919 | MS.gene80156:CDS | 15.0% |
| !! | TTAAATAATTCAATCTAAAC+AGG | - | chr3.4:92227640-92227659 | None:intergenic | 15.0% |
| !!! | AAAACTAATTAATTTGATAG+AGG | - | chr3.4:92227334-92227353 | None:intergenic | 15.0% |
| !! | ATAATATTCATAATCTCGAT+TGG | - | chr3.4:92230136-92230155 | None:intergenic | 20.0% |
| !! | TAATATTCATAATCTCGATT+GGG | - | chr3.4:92230135-92230154 | None:intergenic | 20.0% |
| !! | TGGATGATATTTATGATATA+TGG | + | chr3.4:92226363-92226382 | MS.gene80156:CDS | 20.0% |
| ! | AAACAGAAGAATAGAGATTA+AGG | - | chr3.4:92228775-92228794 | None:intergenic | 25.0% |
| ! | AAATTCTCACAAATTTAACC+AGG | + | chr3.4:92228251-92228270 | MS.gene80156:CDS | 25.0% |
| ! | AACAATTGGAATCAATTACA+TGG | + | chr3.4:92227005-92227024 | MS.gene80156:CDS | 25.0% |
| ! | AACATAGATGTTGTCAATAA+TGG | + | chr3.4:92229783-92229802 | MS.gene80156:CDS | 25.0% |
| ! | AATAAAACCATTCACATAAC+AGG | + | chr3.4:92227270-92227289 | MS.gene80156:CDS | 25.0% |
| ! | ACAATTGGAATCAATTACAT+GGG | + | chr3.4:92227006-92227025 | MS.gene80156:CDS | 25.0% |
| ! | AGATAACAAGATTAACATCA+TGG | + | chr3.4:92229728-92229747 | MS.gene80156:CDS | 25.0% |
| ! | AGTGTATTGAACAATACTTA+AGG | + | chr3.4:92230464-92230483 | MS.gene80156:CDS | 25.0% |
| ! | ATAAAATGTAACTTCTGCAT+AGG | + | chr3.4:92229149-92229168 | MS.gene80156:intron | 25.0% |
| ! | ATATCATCCAATATAGAAAC+CGG | - | chr3.4:92226353-92226372 | None:intergenic | 25.0% |
| ! | ATGAATCTCTTGAAAAATGT+AGG | + | chr3.4:92227176-92227195 | MS.gene80156:intron | 25.0% |
| ! | CAGAAAATATTAACCATAGA+AGG | + | chr3.4:92228033-92228052 | MS.gene80156:CDS | 25.0% |
| ! | CATTATATAGATGATGTTTG+TGG | - | chr3.4:92229572-92229591 | None:intergenic | 25.0% |
| ! | GTAGTGAAAGAAGAAAAATA+TGG | + | chr3.4:92228567-92228586 | MS.gene80156:CDS | 25.0% |
| ! | TAGTTATAGTAGATAATACC+TGG | - | chr3.4:92228723-92228742 | None:intergenic | 25.0% |
| ! | TCACATAAAAATTTAGTACC+TGG | - | chr3.4:92228272-92228291 | None:intergenic | 25.0% |
| ! | TTCAAGCAACAAAACTAATT+CGG | + | chr3.4:92230049-92230068 | MS.gene80156:CDS | 25.0% |
| ! | TTTCCTCTATTAAAAAGATG+AGG | - | chr3.4:92227380-92227399 | None:intergenic | 25.0% |
| !! | AATTTCTTGTGTAGAGTATT+TGG | + | chr3.4:92229001-92229020 | MS.gene80156:intron | 25.0% |
| !! | ATTTTCTGTCATCTTTTTTC+AGG | + | chr3.4:92226798-92226817 | MS.gene80156:intron | 25.0% |
| !! | TTTCCTCATCTTTTTAATAG+AGG | + | chr3.4:92227374-92227393 | MS.gene80156:intron | 25.0% |
| !!! | AGTTGATGATTCAAATTCAT+TGG | + | chr3.4:92229506-92229525 | MS.gene80156:CDS | 25.0% |
| !!! | ATCTTTTTTCAGGACATAAT+AGG | + | chr3.4:92226808-92226827 | MS.gene80156:intron | 25.0% |
| AAACTTCCCTCTTAAAATCT+TGG | - | chr3.4:92226879-92226898 | None:intergenic | 30.0% | |
| AACATATCTTGATCATTTCC+TGG | - | chr3.4:92226068-92226087 | None:intergenic | 30.0% | |
| AATTATTCGTAGAGAGAAAG+TGG | - | chr3.4:92229892-92229911 | None:intergenic | 30.0% | |
| AGCTATCTTAAAGACTTTAC+AGG | - | chr3.4:92227727-92227746 | None:intergenic | 30.0% | |
| ATCCTTACTATGAATGTCTT+TGG | + | chr3.4:92230307-92230326 | MS.gene80156:intron | 30.0% | |
| ATCTATATAATGCTCATGCA+TGG | + | chr3.4:92229580-92229599 | MS.gene80156:CDS | 30.0% | |
| ATTGGAAGAACATAGATTTG+AGG | + | chr3.4:92226301-92226320 | MS.gene80156:CDS | 30.0% | |
| ATTTCATAGTTGCACTTTAC+AGG | + | chr3.4:92229999-92230018 | MS.gene80156:intron | 30.0% | |
| CAATCTAAACAGGTCTAATA+TGG | - | chr3.4:92227630-92227649 | None:intergenic | 30.0% | |
| CTCACAAATTTCACAGAAAA+AGG | + | chr3.4:92226149-92226168 | MS.gene80156:CDS | 30.0% | |
| GAAAATCCACAAAATTTGTG+CGG | - | chr3.4:92229426-92229445 | None:intergenic | 30.0% | |
| GCCATCAAATTTACAAATGA+AGG | + | chr3.4:92228444-92228463 | MS.gene80156:CDS | 30.0% | |
| GCCTTCATTTGTAAATTTGA+TGG | - | chr3.4:92228448-92228467 | None:intergenic | 30.0% | |
| TAAACAGGTCTAATATGGAT+TGG | - | chr3.4:92227625-92227644 | None:intergenic | 30.0% | |
| TATACTCCCAATGTTTCATA+AGG | - | chr3.4:92226193-92226212 | None:intergenic | 30.0% | |
| TCCAATGACAACATATCAAA+AGG | + | chr3.4:92229474-92229493 | MS.gene80156:CDS | 30.0% | |
| TCCTTACTATGAATGTCTTT+GGG | + | chr3.4:92230308-92230327 | MS.gene80156:intron | 30.0% | |
| TGTAGGTTAGAAAAAGAGAA+AGG | + | chr3.4:92227193-92227212 | MS.gene80156:intron | 30.0% | |
| TTACAAATGAAGGCAAAGTA+GGG | + | chr3.4:92228454-92228473 | MS.gene80156:CDS | 30.0% | |
| TTTACAAATGAAGGCAAAGT+AGG | + | chr3.4:92228453-92228472 | MS.gene80156:CDS | 30.0% | |
| TTTCACTACATTCACAGAAA+TGG | - | chr3.4:92228556-92228575 | None:intergenic | 30.0% | |
| ! | ACTAATCTTTTGTACGCTTT+CGG | - | chr3.4:92228520-92228539 | None:intergenic | 30.0% |
| ! | AGAATGTTTTGCTAATGGTA+TGG | + | chr3.4:92230399-92230418 | MS.gene80156:CDS | 30.0% |
| ! | ATCTAGTTTATGTATCACTG+AGG | - | chr3.4:92227886-92227905 | None:intergenic | 30.0% |
| ! | GCAAAAAAGTATATGTATCC+TGG | - | chr3.4:92227088-92227107 | None:intergenic | 30.0% |
| ! | TCCTTTTGATATGTTGTCAT+TGG | - | chr3.4:92229478-92229497 | None:intergenic | 30.0% |
| ! | TCTTCAACAAGAAGGATTTT+AGG | - | chr3.4:92229711-92229730 | None:intergenic | 30.0% |
| ! | TCTTGTTATCTTCAACAAGA+AGG | - | chr3.4:92229719-92229738 | None:intergenic | 30.0% |
| ! | TTTAGGCTTTGATATGGATT+TGG | - | chr3.4:92229694-92229713 | None:intergenic | 30.0% |
| !! | AAGGATTTTAGGCTTTGATA+TGG | - | chr3.4:92229700-92229719 | None:intergenic | 30.0% |
| !! | AGATTTTAAGAGGGAAGTTT+TGG | + | chr3.4:92226879-92226898 | MS.gene80156:CDS | 30.0% |
| !! | ATAAGTTGTTTTCAGCGTAT+CGG | + | chr3.4:92227674-92227693 | MS.gene80156:intron | 30.0% |
| !! | TCTAATATGGATTGGAAACA+AGG | - | chr3.4:92227617-92227636 | None:intergenic | 30.0% |
| !!! | ACAACATTACTTTTTCTGCA+AGG | - | chr3.4:92226401-92226420 | None:intergenic | 30.0% |
| !!! | ACTTTTGAGACAGAACTATT+TGG | + | chr3.4:92226931-92226950 | MS.gene80156:CDS | 30.0% |
| !!! | TTGGTGATGTTTTAAGGATT+CGG | + | chr3.4:92228227-92228246 | MS.gene80156:CDS | 30.0% |
| AAAAAGGATTGCCTGCAAAA+AGG | + | chr3.4:92226902-92226921 | MS.gene80156:CDS | 35.0% | |
| AAAACTAATTCGGTCTTTCG+AGG | + | chr3.4:92230059-92230078 | MS.gene80156:CDS | 35.0% | |
| AAAAGGATTGCCTGCAAAAA+GGG | + | chr3.4:92226903-92226922 | MS.gene80156:CDS | 35.0% | |
| AAATGTGTCATCACCTCTAT+AGG | - | chr3.4:92228078-92228097 | None:intergenic | 35.0% | |
| AAGAATCTGCAATACCATTC+TGG | - | chr3.4:92229608-92229627 | None:intergenic | 35.0% | |
| ACAATCCATGATGAAACAGT+TGG | + | chr3.4:92229755-92229774 | MS.gene80156:CDS | 35.0% | |
| ACTAGCAATATGCAAACAAC+TGG | + | chr3.4:92228976-92228995 | MS.gene80156:CDS | 35.0% | |
| ACTGATGTCGAAATATTCAC+TGG | + | chr3.4:92226835-92226854 | MS.gene80156:CDS | 35.0% | |
| AGAGTGTGTTGAGGATATTA+TGG | + | chr3.4:92225968-92225987 | MS.gene80156:CDS | 35.0% | |
| AGATTTGAGGACGAAAGATA+CGG | + | chr3.4:92226314-92226333 | MS.gene80156:CDS | 35.0% | |
| AGCCTACCTTATGAAACATT+GGG | + | chr3.4:92226184-92226203 | MS.gene80156:CDS | 35.0% | |
| AGTATGATACTGTTGTGTAC+TGG | + | chr3.4:92226453-92226472 | MS.gene80156:CDS | 35.0% | |
| ATATAGAAACCGGTCGTTTA+TGG | - | chr3.4:92226343-92226362 | None:intergenic | 35.0% | |
| ATGTTGTCATTGGAAGTAGA+GGG | - | chr3.4:92229468-92229487 | None:intergenic | 35.0% | |
| ATTACCTCCTCATGTAAACT+TGG | - | chr3.4:92226719-92226738 | None:intergenic | 35.0% | |
| ATTTGAGAGAGTTCTTCAAC+AGG | - | chr3.4:92226590-92226609 | None:intergenic | 35.0% | |
| CAAAATGCTCCTGTTGTTAT+TGG | + | chr3.4:92226647-92226666 | MS.gene80156:CDS | 35.0% | |
| CAACCTAAACAAACAAAGAC+AGG | + | chr3.4:92226253-92226272 | MS.gene80156:CDS | 35.0% | |
| CAATCAACCTGTTATGTGAA+TGG | - | chr3.4:92227280-92227299 | None:intergenic | 35.0% | |
| CAATCCATGATGAAACAGTT+GGG | + | chr3.4:92229756-92229775 | MS.gene80156:CDS | 35.0% | |
| CACATTCATACTTCCATACA+AGG | + | chr3.4:92229230-92229249 | MS.gene80156:CDS | 35.0% | |
| CAGTTCAATATAGAAAAGCC+AGG | + | chr3.4:92226047-92226066 | MS.gene80156:CDS | 35.0% | |
| CATAAATTACCATCAGAACC+AGG | - | chr3.4:92229848-92229867 | None:intergenic | 35.0% | |
| GATGTATATGATACAGGCAT+TGG | + | chr3.4:92228693-92228712 | MS.gene80156:CDS | 35.0% | |
| GGTTAGAAAAAGAGAAAGGA+TGG | + | chr3.4:92227197-92227216 | MS.gene80156:intron | 35.0% | |
| GGTTGTGATGTATATGATAC+AGG | + | chr3.4:92228687-92228706 | MS.gene80156:CDS | 35.0% | |
| GTGTCTAGCAAAGAACAAAA+TGG | + | chr3.4:92229198-92229217 | MS.gene80156:CDS | 35.0% | |
| TAATGATGAGTGTAGATCTC+CGG | + | chr3.4:92228593-92228612 | MS.gene80156:CDS | 35.0% | |
| TAGCCTACCTTATGAAACAT+TGG | + | chr3.4:92226183-92226202 | MS.gene80156:CDS | 35.0% | |
| TATGTTGTCATTGGAAGTAG+AGG | - | chr3.4:92229469-92229488 | None:intergenic | 35.0% | |
| TCCCAAAGACATTCATAGTA+AGG | - | chr3.4:92230312-92230331 | None:intergenic | 35.0% | |
| TCTGATGATACAACAACAGA+AGG | + | chr3.4:92229321-92229340 | MS.gene80156:CDS | 35.0% | |
| TGACATACTTGATCTTTCCA+AGG | + | chr3.4:92227569-92227588 | MS.gene80156:CDS | 35.0% | |
| TGCTTATATATCGTTCCAGA+GGG | + | chr3.4:92227105-92227124 | MS.gene80156:intron | 35.0% | |
| TGGAATCAATTACATGGGAA+TGG | + | chr3.4:92227011-92227030 | MS.gene80156:CDS | 35.0% | |
| TGTTGAAGCTCTTCTTGAAA+AGG | + | chr3.4:92226748-92226767 | MS.gene80156:intron | 35.0% | |
| TTGCTTATATATCGTTCCAG+AGG | + | chr3.4:92227104-92227123 | MS.gene80156:intron | 35.0% | |
| TTTACACCTTCAGTGTGTAT+CGG | + | chr3.4:92228354-92228373 | MS.gene80156:intron | 35.0% | |
| ! | AAAGTGATTTCCCTTTTTGC+AGG | - | chr3.4:92226916-92226935 | None:intergenic | 35.0% |
| ! | AGCGTACAAAAGATTAGTTC+AGG | + | chr3.4:92228522-92228541 | MS.gene80156:CDS | 35.0% |
| ! | AGGAGAACCAAGATTTTAAG+AGG | + | chr3.4:92226869-92226888 | MS.gene80156:CDS | 35.0% |
| ! | CATCCTGTCTTTGTTTGTTT+AGG | - | chr3.4:92226259-92226278 | None:intergenic | 35.0% |
| ! | CTAATCTTTTGTACGCTTTC+GGG | - | chr3.4:92228519-92228538 | None:intergenic | 35.0% |
| ! | CTACACAGAATGCAGATTTT+GGG | - | chr3.4:92227933-92227952 | None:intergenic | 35.0% |
| ! | GCTGAAGAATGTTTTGCTAA+TGG | + | chr3.4:92230394-92230413 | MS.gene80156:CDS | 35.0% |
| ! | GTATGGAAGTATGAATGTGA+AGG | - | chr3.4:92229229-92229248 | None:intergenic | 35.0% |
| ! | GTGTAGAGTATTTGGTTACA+TGG | + | chr3.4:92229009-92229028 | MS.gene80156:intron | 35.0% |
| ! | GTTACTCCCTACGAAATTTT+TGG | + | chr3.4:92227061-92227080 | MS.gene80156:intron | 35.0% |
| ! | TAAACGACCGGTTTCTATAT+TGG | + | chr3.4:92226343-92226362 | MS.gene80156:CDS | 35.0% |
| ! | TATTTTCTGCAATGATGCTG+CGG | - | chr3.4:92228022-92228041 | None:intergenic | 35.0% |
| ! | TTATTGCCGCACAAATTTTG+TGG | + | chr3.4:92229417-92229436 | MS.gene80156:CDS | 35.0% |
| ! | TTCAATTTTCGTAAACTCGC+AGG | - | chr3.4:92230442-92230461 | None:intergenic | 35.0% |
| !! | CTGGTTCTGATGGTAATTTA+TGG | + | chr3.4:92229846-92229865 | MS.gene80156:intron | 35.0% |
| !! | GGAGAACCAAGATTTTAAGA+GGG | + | chr3.4:92226870-92226889 | MS.gene80156:CDS | 35.0% |
| !!! | AAGAGGGAAGTTTTGGAAAA+AGG | + | chr3.4:92226886-92226905 | MS.gene80156:CDS | 35.0% |
| !!! | AGGTCATTGGTGATGTTTTA+AGG | + | chr3.4:92228221-92228240 | MS.gene80156:intron | 35.0% |
| !!! | CAATAACAACAGGAGCATTT+TGG | - | chr3.4:92226649-92226668 | None:intergenic | 35.0% |
| !!! | CTTTCGGGTTTTGTAAAACT+TGG | - | chr3.4:92228504-92228523 | None:intergenic | 35.0% |
| AAAGACAGGATGTTGAGCTA+AGG | + | chr3.4:92226267-92226286 | MS.gene80156:CDS | 40.0% | |
| AAAGCGAATTCCCATTGTTG+CGG | + | chr3.4:92230167-92230186 | MS.gene80156:CDS | 40.0% | |
| AAGAGTGAATGCTCGATGAA+CGG | + | chr3.4:92228618-92228637 | MS.gene80156:CDS | 40.0% | |
| AATGCAACAACAGTGTGGAT+AGG | + | chr3.4:92228666-92228685 | MS.gene80156:CDS | 40.0% | |
| ACATGCTTTACTACCTCTCT+AGG | - | chr3.4:92227988-92228007 | None:intergenic | 40.0% | |
| ACTCAAATGCAACAACAGTG+TGG | + | chr3.4:92228661-92228680 | MS.gene80156:CDS | 40.0% | |
| ACTTAACCGATACACACTGA+AGG | - | chr3.4:92228363-92228382 | None:intergenic | 40.0% | |
| AGAGACTAGATGGCCTAAAT+TGG | - | chr3.4:92229367-92229386 | None:intergenic | 40.0% | |
| AGATTCTTCTCAGCATATGG+TGG | + | chr3.4:92229620-92229639 | MS.gene80156:CDS | 40.0% | |
| AGCAGATGATGTACCTATAG+AGG | + | chr3.4:92228062-92228081 | MS.gene80156:CDS | 40.0% | |
| ATATCTTCTGGCCACATTGA+AGG | - | chr3.4:92226008-92226027 | None:intergenic | 40.0% | |
| ATCGAGCATTCACTCTTAAC+CGG | - | chr3.4:92228615-92228634 | None:intergenic | 40.0% | |
| ATCTGCTACATGTCCTTCTA+TGG | - | chr3.4:92228049-92228068 | None:intergenic | 40.0% | |
| ATGACCCAACTGTTTCATCA+TGG | - | chr3.4:92229763-92229782 | None:intergenic | 40.0% | |
| ATGCTAACAACACCAGAAAG+TGG | - | chr3.4:92227453-92227472 | None:intergenic | 40.0% | |
| ATGGGAATTCGCTTTGTAGA+TGG | - | chr3.4:92230162-92230181 | None:intergenic | 40.0% | |
| CAATTCCAACCTCCCAATTT+AGG | + | chr3.4:92229351-92229370 | MS.gene80156:CDS | 40.0% | |
| CATGTTGTCATCTGGAGATT+TGG | + | chr3.4:92227530-92227549 | MS.gene80156:CDS | 40.0% | |
| CATTCGTAATTGCAGGTCAT+TGG | + | chr3.4:92228208-92228227 | MS.gene80156:intron | 40.0% | |
| CCAAAATCTGCATTCTGTGT+AGG | + | chr3.4:92227931-92227950 | MS.gene80156:intron | 40.0% | |
| CCACTTTCCAAGTTTACATG+AGG | + | chr3.4:92226709-92226728 | MS.gene80156:CDS | 40.0% | |
| CCTCATGTAAACTTGGAAAG+TGG | - | chr3.4:92226712-92226731 | None:intergenic | 40.0% | |
| CCTGGTCCAAAAATTTCGTA+GGG | - | chr3.4:92227070-92227089 | None:intergenic | 40.0% | |
| CTAAATTGGGAGGTTGGAAT+TGG | - | chr3.4:92229353-92229372 | None:intergenic | 40.0% | |
| CTCAGATGAATTCTCAGACA+TGG | + | chr3.4:92229281-92229300 | MS.gene80156:CDS | 40.0% | |
| CTCCCAATGTTTCATAAGGT+AGG | - | chr3.4:92226189-92226208 | None:intergenic | 40.0% | |
| CTGTGTAGGAGTTATGAAGT+TGG | + | chr3.4:92227945-92227964 | MS.gene80156:intron | 40.0% | |
| CTTTCCAAGTTTACATGAGG+AGG | + | chr3.4:92226712-92226731 | MS.gene80156:CDS | 40.0% | |
| GAGACTAGATGGCCTAAATT+GGG | - | chr3.4:92229366-92229385 | None:intergenic | 40.0% | |
| GAGATAAGATCTCCACTTTC+TGG | + | chr3.4:92227438-92227457 | MS.gene80156:CDS | 40.0% | |
| GATCTTTCCAAGGTTGAATC+AGG | + | chr3.4:92227579-92227598 | MS.gene80156:CDS | 40.0% | |
| GATGCACTTGGAAAAGTTGT+TGG | + | chr3.4:92226487-92226506 | MS.gene80156:CDS | 40.0% | |
| GCTAAGGAAGTTGGAGATAT+TGG | + | chr3.4:92226283-92226302 | MS.gene80156:CDS | 40.0% | |
| GCTTGAAGACCATCCATAAT+TGG | - | chr3.4:92230036-92230055 | None:intergenic | 40.0% | |
| GTCGAAATATTCACTGGATC+TGG | + | chr3.4:92226841-92226860 | MS.gene80156:CDS | 40.0% | |
| TAAGAAGTCAATACTCCCTC+TGG | - | chr3.4:92227123-92227142 | None:intergenic | 40.0% | |
| TACCAAATTTCGACCTAGAG+AGG | + | chr3.4:92227972-92227991 | MS.gene80156:CDS | 40.0% | |
| TACCTCTCTAGGTCGAAATT+TGG | - | chr3.4:92227977-92227996 | None:intergenic | 40.0% | |
| TCAATGTGGCCAGAAGATAT+TGG | + | chr3.4:92226008-92226027 | MS.gene80156:CDS | 40.0% | |
| TCATGTCCATCTAGTACACA+TGG | - | chr3.4:92228126-92228145 | None:intergenic | 40.0% | |
| TCCTGGTCCAAAAATTTCGT+AGG | - | chr3.4:92227071-92227090 | None:intergenic | 40.0% | |
| TCTGCTTCATTCGTAATTGC+AGG | + | chr3.4:92228201-92228220 | MS.gene80156:intron | 40.0% | |
| TGCAGATTCTTCTCAGCATA+TGG | + | chr3.4:92229617-92229636 | MS.gene80156:CDS | 40.0% | |
| TTCCACCACAAAACTTGACA+AGG | + | chr3.4:92227485-92227504 | MS.gene80156:CDS | 40.0% | |
| TTGAAGTCCTTCCTTCAATG+TGG | + | chr3.4:92225994-92226013 | MS.gene80156:CDS | 40.0% | |
| TTGGATGTCATGTTGTCATC+TGG | + | chr3.4:92227522-92227541 | MS.gene80156:CDS | 40.0% | |
| TTTCCAACCTGATTCAACCT+TGG | - | chr3.4:92227589-92227608 | None:intergenic | 40.0% | |
| TTTCCAAGGTTGAATCAGGT+TGG | + | chr3.4:92227583-92227602 | MS.gene80156:intron | 40.0% | |
| TTTCGAGGAAACAGGCAATT+GGG | + | chr3.4:92230074-92230093 | MS.gene80156:CDS | 40.0% | |
| ! | ATTCACTGGATCTGGTGTTA+AGG | + | chr3.4:92226849-92226868 | MS.gene80156:CDS | 40.0% |
| ! | CCTACACAGAATGCAGATTT+TGG | - | chr3.4:92227934-92227953 | None:intergenic | 40.0% |
| ! | GAAACATTGGGAGTATAAGC+AGG | + | chr3.4:92226196-92226215 | MS.gene80156:CDS | 40.0% |
| ! | GATTGCTGTTCAGAAAGCAA+AGG | + | chr3.4:92227236-92227255 | MS.gene80156:CDS | 40.0% |
| ! | TATGAGAGCAAAGAAAGTGC+TGG | + | chr3.4:92227401-92227420 | MS.gene80156:CDS | 40.0% |
| ! | TGTTGTCAATAATGGAGCAG+AGG | + | chr3.4:92229791-92229810 | MS.gene80156:CDS | 40.0% |
| ! | TTGCTCCTTGTCAAGTTTTG+TGG | - | chr3.4:92227493-92227512 | None:intergenic | 40.0% |
| ! | TTGGCTCTTGCACAACATAA+AGG | - | chr3.4:92228485-92228504 | None:intergenic | 40.0% |
| !! | ACTTTCTGGTGTTGTTAGCA+TGG | + | chr3.4:92227452-92227471 | MS.gene80156:CDS | 40.0% |
| !! | TACATATGACCTGGTTCTGA+TGG | + | chr3.4:92229836-92229855 | MS.gene80156:CDS | 40.0% |
| !! | TCTGCATAGGTTGAGTTGAT+GGG | + | chr3.4:92229162-92229181 | MS.gene80156:intron | 40.0% |
| !! | TTCTGCATAGGTTGAGTTGA+TGG | + | chr3.4:92229161-92229180 | MS.gene80156:intron | 40.0% |
| ACCTCAACTCTTTGTCCTGA+TGG | - | chr3.4:92226673-92226692 | None:intergenic | 45.0% | |
| ACGTCAGCTCCAATATCTTC+TGG | - | chr3.4:92226020-92226039 | None:intergenic | 45.0% | |
| ACTAGATGGCCTAAATTGGG+AGG | - | chr3.4:92229363-92229382 | None:intergenic | 45.0% | |
| AGCAAGGCAGGTGAAACAAT+TGG | + | chr3.4:92226991-92227010 | MS.gene80156:CDS | 45.0% | |
| ATTCGGTCTTTCGAGGAAAC+AGG | + | chr3.4:92230066-92230085 | MS.gene80156:CDS | 45.0% | |
| CTAGTGCTTACCGCAACAAT+GGG | - | chr3.4:92230180-92230199 | None:intergenic | 45.0% | |
| CTTTCGAGGAAACAGGCAAT+TGG | + | chr3.4:92230073-92230092 | MS.gene80156:CDS | 45.0% | |
| GAAGATATTGGAGCTGACGT+TGG | + | chr3.4:92226020-92226039 | MS.gene80156:CDS | 45.0% | |
| GCACTTGGAAAAGTTGTTGG+AGG | + | chr3.4:92226490-92226509 | MS.gene80156:CDS | 45.0% | |
| GGATGTGTGCATGCCAATTA+TGG | + | chr3.4:92230020-92230039 | MS.gene80156:intron | 45.0% | |
| GGATGTTGAGCTAAGGAAGT+TGG | + | chr3.4:92226274-92226293 | MS.gene80156:CDS | 45.0% | |
| GGGAATGGATGTAACAGATC+AGG | + | chr3.4:92227026-92227045 | MS.gene80156:CDS | 45.0% | |
| GTAGATCACGCTCGAAAGTA+TGG | + | chr3.4:92228938-92228957 | MS.gene80156:CDS | 45.0% | |
| GTGTGCATGCCAATTATGGA+TGG | + | chr3.4:92230024-92230043 | MS.gene80156:CDS | 45.0% | |
| GTGTTGCCATGTGTACTAGA+TGG | + | chr3.4:92228117-92228136 | MS.gene80156:intron | 45.0% | |
| TCCTGATGGCCAATAACAAC+AGG | - | chr3.4:92226659-92226678 | None:intergenic | 45.0% | |
| TCTAGTGCTTACCGCAACAA+TGG | - | chr3.4:92230181-92230200 | None:intergenic | 45.0% | |
| TGGGATGCTGCAAAAAATGC+CGG | + | chr3.4:92230093-92230112 | MS.gene80156:CDS | 45.0% | |
| TGTAGAACCTGTCTTCAGCA+AGG | + | chr3.4:92226975-92226994 | MS.gene80156:CDS | 45.0% | |
| TTTGAGGACGAAAGATACGG+AGG | + | chr3.4:92226317-92226336 | MS.gene80156:CDS | 45.0% | |
| ! | ATCACGCTCGAAAGTATGGT+GGG | + | chr3.4:92228942-92228961 | MS.gene80156:CDS | 45.0% |
| ! | CACAGAATGCAGATTTTGGG+AGG | - | chr3.4:92227930-92227949 | None:intergenic | 45.0% |
| ! | TCCTGTTGTTATTGGCCATC+AGG | + | chr3.4:92226655-92226674 | MS.gene80156:CDS | 45.0% |
| ! | TGTCAATAATGGAGCAGAGG+CGG | + | chr3.4:92229794-92229813 | MS.gene80156:CDS | 45.0% |
| !! | CCCTACGAAATTTTTGGACC+AGG | + | chr3.4:92227067-92227086 | MS.gene80156:intron | 45.0% |
| !! | CTCCTTGTCAAGTTTTGTGG+TGG | - | chr3.4:92227490-92227509 | None:intergenic | 45.0% |
| !! | GAATGCAGATTTTGGGAGGT+AGG | - | chr3.4:92227926-92227945 | None:intergenic | 45.0% |
| !! | GATACAGGCATTGGAATACC+AGG | + | chr3.4:92228702-92228721 | MS.gene80156:CDS | 45.0% |
| ATACGGAGGCCATAAACGAC+CGG | + | chr3.4:92226331-92226350 | MS.gene80156:CDS | 50.0% | |
| CAAGCGATCGAGACCTTGTA+TGG | - | chr3.4:92229246-92229265 | None:intergenic | 50.0% | |
| CAAGGAGCAAAGACAGCTGT+TGG | + | chr3.4:92227503-92227522 | MS.gene80156:CDS | 50.0% | |
| CTCCACTGGAAGAGACTAGA+TGG | - | chr3.4:92229377-92229396 | None:intergenic | 50.0% | |
| CTTCTGGCCACATTGAAGGA+AGG | - | chr3.4:92226004-92226023 | None:intergenic | 50.0% | |
| GATGGCCTAAATTGGGAGGT+TGG | - | chr3.4:92229359-92229378 | None:intergenic | 50.0% | |
| GCCATCAGGACAAAGAGTTG+AGG | + | chr3.4:92226669-92226688 | MS.gene80156:CDS | 50.0% | |
| GCTCATGCATGGTTCCAGAA+TGG | + | chr3.4:92229591-92229610 | MS.gene80156:CDS | 50.0% | |
| GGGTAGACTTTGCTCGATTC+CGG | - | chr3.4:92230115-92230134 | None:intergenic | 50.0% | |
| GTGAGTTCTGTTTGCTCCAC+TGG | - | chr3.4:92229391-92229410 | None:intergenic | 50.0% | |
| TCAGCGCTGTACATATGACC+TGG | + | chr3.4:92229827-92229846 | MS.gene80156:CDS | 50.0% | |
| ! | CTCGAAAGTATGGTGGGACA+GGG | + | chr3.4:92228948-92228967 | MS.gene80156:CDS | 50.0% |
| ! | GATCACGCTCGAAAGTATGG+TGG | + | chr3.4:92228941-92228960 | MS.gene80156:CDS | 50.0% |
| !! | GCATAGGTTGAGTTGATGGG+AGG | + | chr3.4:92229165-92229184 | MS.gene80156:intron | 50.0% |
| ATGATGCTGCGGCTGTCTGA+AGG | - | chr3.4:92228011-92228030 | None:intergenic | 55.0% | |
| CTCGATGAACGGAGACACAG+AGG | + | chr3.4:92228629-92228648 | MS.gene80156:CDS | 55.0% | |
| GAAACAGCGAGCGATGCACT+TGG | + | chr3.4:92226475-92226494 | MS.gene80156:CDS | 55.0% | |
| GAACCTGTCTTCAGCAAGGC+AGG | + | chr3.4:92226979-92226998 | MS.gene80156:CDS | 55.0% | |
| GGCCATCTAGTCTCTTCCAG+TGG | + | chr3.4:92229372-92229391 | MS.gene80156:CDS | 55.0% | |
| TCACCTGCCTTGCTGAAGAC+AGG | - | chr3.4:92226985-92227004 | None:intergenic | 55.0% | |
| ! | AAGTATGGTGGGACAGGGCT+AGG | + | chr3.4:92228953-92228972 | MS.gene80156:CDS | 55.0% |
| ! | GCTCGAAAGTATGGTGGGAC+AGG | + | chr3.4:92228947-92228966 | MS.gene80156:CDS | 55.0% |
| GGAGTATAAGCAGGCGAGCG+TGG | + | chr3.4:92226205-92226224 | MS.gene80156:CDS | 60.0% | |
| TGGAGCAGAGGCGGTGCGTG+CGG | + | chr3.4:92229803-92229822 | MS.gene80156:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92225960 | 92230489 | 92225960 | ID=MS.gene80156 |
| chr3.4 | mRNA | 92225960 | 92230489 | 92225960 | ID=MS.gene80156.t1;Parent=MS.gene80156 |
| chr3.4 | exon | 92225960 | 92226733 | 92225960 | ID=MS.gene80156.t1.exon1;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92225960 | 92226733 | 92225960 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92226820 | 92227047 | 92226820 | ID=MS.gene80156.t1.exon2;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92226820 | 92227047 | 92226820 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92227198 | 92227291 | 92227198 | ID=MS.gene80156.t1.exon3;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92227198 | 92227291 | 92227198 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92227394 | 92227600 | 92227394 | ID=MS.gene80156.t1.exon4;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92227394 | 92227600 | 92227394 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92227953 | 92228083 | 92227953 | ID=MS.gene80156.t1.exon5;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92227953 | 92228083 | 92227953 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92228223 | 92228272 | 92228223 | ID=MS.gene80156.t1.exon6;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92228223 | 92228272 | 92228223 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92228440 | 92228723 | 92228440 | ID=MS.gene80156.t1.exon7;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92228440 | 92228723 | 92228440 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92228894 | 92228997 | 92228894 | ID=MS.gene80156.t1.exon8;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92228894 | 92228997 | 92228894 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92229171 | 92229857 | 92229171 | ID=MS.gene80156.t1.exon9;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92229171 | 92229857 | 92229171 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92230021 | 92230188 | 92230021 | ID=MS.gene80156.t1.exon10;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92230021 | 92230188 | 92230021 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| chr3.4 | exon | 92230367 | 92230489 | 92230367 | ID=MS.gene80156.t1.exon11;Parent=MS.gene80156.t1 |
| chr3.4 | CDS | 92230367 | 92230489 | 92230367 | ID=cds.MS.gene80156.t1;Parent=MS.gene80156.t1 |
| Gene Sequence |
| Protein sequence |
