AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80160.t1 MTR_1g104555 89.683 126 13 0 1 126 549 674 1.25e-76 239
MS.gene80160.t1 MTR_5g006160 55.645 124 45 2 1 124 657 770 1.22e-41 146
MS.gene80160.t1 MTR_2g067970 43.802 121 63 3 2 122 771 886 1.10e-29 112
MS.gene80160.t1 MTR_5g013070 42.149 121 66 2 2 122 678 794 1.06e-28 109
MS.gene80160.t1 MTR_2g067990 44.628 121 62 2 2 122 883 998 1.30e-28 109
MS.gene80160.t1 MTR_2g067980 44.628 121 62 2 2 122 907 1022 2.29e-28 108
MS.gene80160.t1 MTR_2g068650 43.802 121 63 2 2 122 621 736 5.62e-28 107
MS.gene80160.t1 MTR_5g013130 41.322 121 67 2 2 122 675 791 1.73e-27 106
MS.gene80160.t1 MTR_8g011370 42.149 121 66 1 2 122 688 804 1.77e-25 100
MS.gene80160.t1 MTR_8g011410 41.880 117 64 1 2 118 690 802 9.30e-23 92.8
MS.gene80160.t1 MTR_4g114270 33.871 124 74 3 2 125 691 806 2.74e-21 88.6
MS.gene80160.t1 MTR_8g011440 38.333 120 70 1 2 121 702 817 3.35e-20 85.5
MS.gene80160.t1 MTR_4g114280 37.500 120 69 3 4 122 720 834 6.01e-20 84.7
MS.gene80160.t1 MTR_4g114250 33.058 121 73 3 2 122 693 805 1.33e-19 83.6
MS.gene80160.t1 MTR_4g114240 39.167 120 67 3 4 122 706 820 5.22e-19 82.0
MS.gene80160.t1 MTR_8g067690 35.200 125 70 4 1 123 521 636 7.19e-18 78.6
MS.gene80160.t1 MTR_3g107070 34.711 121 73 1 2 122 639 753 1.45e-17 77.8
MS.gene80160.t1 MTR_6g043790 37.903 124 66 4 2 122 661 776 1.63e-17 77.8
MS.gene80160.t1 MTR_2g073250 35.246 122 72 2 2 122 651 766 1.97e-17 77.4
MS.gene80160.t1 MTR_6g043510 36.719 128 68 4 2 124 656 775 1.98e-17 77.4
MS.gene80160.t1 MTR_8g067720 34.400 125 71 4 1 123 504 619 2.53e-17 77.0
MS.gene80160.t1 MTR_7g116130 33.333 111 68 1 1 111 521 625 1.17e-16 75.1
MS.gene80160.t1 MTR_2g080100 36.364 121 68 3 4 122 618 731 1.18e-16 75.1
MS.gene80160.t1 MTR_8g067630 33.600 125 72 4 1 123 453 568 1.47e-16 75.1
MS.gene80160.t1 MTR_2g080080 35.772 123 70 3 2 122 647 762 1.85e-16 74.7
MS.gene80160.t1 MTR_5g077100 35.246 122 78 1 1 122 533 653 3.56e-16 73.9
MS.gene80160.t1 MTR_8g030500 28.571 126 86 1 1 122 648 773 1.24e-15 72.4
MS.gene80160.t1 MTR_4g113710 37.795 127 69 4 2 122 274 396 1.79e-15 71.6
MS.gene80160.t1 MTR_1g032930 32.800 125 76 3 2 121 664 785 2.19e-15 71.6
MS.gene80160.t1 MTR_8g067930 33.871 124 71 4 2 123 506 620 2.32e-15 71.6
MS.gene80160.t1 MTR_7g063010 32.500 120 71 3 1 118 504 615 2.96e-15 71.2
MS.gene80160.t1 MTR_2g008370 33.043 115 72 1 1 115 456 565 5.62e-15 70.5
MS.gene80160.t1 MTR_1g099400 29.032 124 80 2 2 123 689 806 5.93e-15 70.5
MS.gene80160.t1 MTR_6g083780 35.200 125 70 5 1 122 519 635 7.48e-15 70.1
MS.gene80160.t1 MTR_1g012550 31.405 121 77 1 2 122 667 781 9.59e-15 69.7
MS.gene80160.t1 MTR_1g028020 33.600 125 73 5 1 122 313 430 1.02e-14 69.7
MS.gene80160.t1 MTR_2g008390 30.435 115 76 1 1 115 461 571 1.24e-14 69.3
MS.gene80160.t1 MTR_2g103810 33.058 121 75 1 2 122 659 773 1.26e-14 69.3
MS.gene80160.t1 MTR_3g460810 36.036 111 64 1 1 111 492 595 1.80e-14 68.9
MS.gene80160.t1 MTR_2g089360 34.074 135 58 5 2 123 661 777 1.82e-14 68.9
MS.gene80160.t1 MTR_1g097160 31.304 115 75 1 1 115 471 581 1.91e-14 68.9
MS.gene80160.t1 MTR_2g054870 33.333 123 80 1 2 122 276 398 2.20e-14 68.6
MS.gene80160.t1 MTR_2g008360 30.435 115 76 1 1 115 460 570 2.26e-14 68.6
MS.gene80160.t1 MTR_8g088760 34.146 123 73 3 2 121 456 573 3.40e-14 68.2
MS.gene80160.t1 MTR_2g036460 34.959 123 72 3 2 123 310 425 3.42e-14 68.2
MS.gene80160.t1 MTR_1g029610 31.405 121 76 1 2 122 459 572 3.46e-14 68.2
MS.gene80160.t1 MTR_2g036490 32.576 132 63 3 2 123 300 415 3.98e-14 67.8
MS.gene80160.t1 MTR_7g063030 30.833 120 73 3 1 118 502 613 4.12e-14 67.8
MS.gene80160.t1 MTR_7g063030 30.833 120 73 3 1 118 508 619 4.13e-14 67.8
MS.gene80160.t1 MTR_5g033820 29.565 115 76 1 1 115 469 578 4.13e-14 67.8
MS.gene80160.t1 MTR_7g115740 33.333 123 74 4 1 123 448 562 4.27e-14 67.8
MS.gene80160.t1 MTR_7g115740 33.333 123 74 4 1 123 524 638 4.33e-14 67.8
MS.gene80160.t1 MTR_2g089440 31.579 133 64 4 2 123 434 550 4.76e-14 67.8
MS.gene80160.t1 MTR_3g031610 34.188 117 67 3 2 111 675 788 4.87e-14 67.8
MS.gene80160.t1 MTR_2g089440 31.579 133 64 4 2 123 666 782 4.96e-14 67.8
MS.gene80160.t1 MTR_4g094858 31.667 120 71 3 2 115 678 792 5.74e-14 67.4
MS.gene80160.t1 MTR_2g073540 33.613 119 69 4 2 118 593 703 5.95e-14 67.4
MS.gene80160.t1 MTR_2g073520 33.613 119 69 4 2 118 699 809 5.99e-14 67.4
MS.gene80160.t1 MTR_8g068050 33.333 123 74 2 1 123 410 524 6.20e-14 67.4
MS.gene80160.t1 MTR_8g068050 33.333 123 74 2 1 123 520 634 6.34e-14 67.4
MS.gene80160.t1 MTR_3g087060 30.435 115 76 1 1 115 442 552 7.28e-14 67.4
MS.gene80160.t1 MTR_3g087060 30.435 115 76 1 1 115 453 563 7.81e-14 67.0
MS.gene80160.t1 MTR_1g028100 31.200 125 76 4 1 122 255 372 8.43e-14 67.0
MS.gene80160.t1 MTR_7g018200 31.304 115 74 1 1 115 469 578 1.14e-13 66.6
MS.gene80160.t1 MTR_0280s0040 31.967 122 78 2 2 123 659 775 1.70e-13 66.2
MS.gene80160.t1 MTR_4g093040 33.607 122 73 2 2 123 526 639 2.02e-13 65.9
MS.gene80160.t1 MTR_1g028170 32.000 125 75 4 1 122 282 399 2.20e-13 65.9
MS.gene80160.t1 MTR_3g102400 31.034 116 74 2 2 111 684 799 2.39e-13 65.9
MS.gene80160.t1 MTR_1g027320 32.787 122 66 5 1 117 168 278 2.43e-13 65.5
MS.gene80160.t1 MTR_3g031510 34.188 117 67 3 2 111 230 343 2.52e-13 65.5
MS.gene80160.t1 MTR_3g031600 33.333 117 68 3 2 111 678 791 2.73e-13 65.5
MS.gene80160.t1 MTR_8g445800 31.933 119 74 2 1 119 667 778 3.82e-13 65.1
MS.gene80160.t1 MTR_8g445800 31.933 119 74 2 1 119 720 831 3.84e-13 65.1
MS.gene80160.t1 MTR_8g445800 31.933 119 74 2 1 119 865 976 3.88e-13 65.1
MS.gene80160.t1 MTR_4g093040 33.636 110 67 1 2 111 444 547 4.49e-13 65.1
MS.gene80160.t1 MTR_8g095030 31.579 114 73 2 1 114 440 548 4.54e-13 65.1
MS.gene80160.t1 MTR_2g008380 30.435 115 76 1 1 115 452 562 7.11e-13 64.3
MS.gene80160.t1 MTR_2g006910 33.594 128 73 3 2 122 483 605 1.04e-12 63.9
MS.gene80160.t1 MTR_2g006910 33.594 128 73 3 2 122 483 605 1.05e-12 63.9
MS.gene80160.t1 MTR_5g095970 33.871 124 70 4 1 121 525 639 1.29e-12 63.5
MS.gene80160.t1 MTR_3g096555 29.661 118 77 2 2 119 470 581 2.04e-12 63.2
MS.gene80160.t1 MTR_3g096555 29.661 118 77 2 2 119 512 623 2.05e-12 63.2
MS.gene80160.t1 MTR_1g027050 31.200 125 76 6 1 122 601 718 2.57e-12 62.8
MS.gene80160.t1 MTR_7g082430 30.709 127 74 6 1 122 481 598 2.83e-12 62.8
MS.gene80160.t1 MTR_7g082110 31.538 130 69 7 1 122 702 819 2.86e-12 62.8
MS.gene80160.t1 MTR_7g082300 31.746 126 74 6 1 122 716 833 2.95e-12 62.8
MS.gene80160.t1 MTR_1g027140 31.200 125 76 6 1 122 598 715 4.01e-12 62.4
MS.gene80160.t1 MTR_5g033690 29.104 134 80 5 1 125 476 603 4.21e-12 62.0
MS.gene80160.t1 MTR_7g058550 32.456 114 70 3 2 111 675 785 4.61e-12 62.0
MS.gene80160.t1 MTR_8g088780 32.800 125 75 2 2 122 487 606 4.62e-12 62.0
MS.gene80160.t1 MTR_7g058530 28.448 116 72 2 2 111 676 786 4.70e-12 62.0
MS.gene80160.t1 MTR_2g036440 32.558 129 69 4 2 125 242 357 5.00e-12 62.0
MS.gene80160.t1 MTR_7g082280 31.618 136 77 7 1 128 593 720 5.24e-12 62.0
MS.gene80160.t1 MTR_0049s0070 28.696 115 77 1 1 115 401 510 5.63e-12 61.6
MS.gene80160.t1 MTR_0049s0070 28.696 115 77 1 1 115 464 573 5.72e-12 61.6
MS.gene80160.t1 MTR_4g093080 32.000 125 72 4 1 123 515 628 5.95e-12 61.6
MS.gene80160.t1 MTR_1g028280 34.109 129 66 7 1 122 500 616 6.85e-12 61.6
MS.gene80160.t1 MTR_1g028280 34.109 129 66 7 1 122 539 655 6.90e-12 61.6
MS.gene80160.t1 MTR_6g016495 29.565 115 76 1 1 115 467 576 7.65e-12 61.6
MS.gene80160.t1 MTR_8g090140 28.696 115 78 1 1 115 450 560 7.92e-12 61.2
MS.gene80160.t1 MTR_7g085860 31.496 127 72 6 1 122 331 447 8.71e-12 61.2
MS.gene80160.t1 MTR_4g093070 30.400 125 76 4 1 123 513 628 1.09e-11 60.8
MS.gene80160.t1 MTR_3g007870 31.148 122 76 2 1 121 512 626 1.10e-11 60.8
MS.gene80160.t1 MTR_7g082470 31.496 127 74 6 1 122 500 618 1.37e-11 60.8
MS.gene80160.t1 MTR_1g027820 30.769 117 72 3 1 115 423 532 1.55e-11 60.5
MS.gene80160.t1 MTR_2g016500 26.613 124 82 2 1 122 465 581 1.63e-11 60.5
MS.gene80160.t1 MTR_1g027540 30.469 128 72 7 1 122 270 386 1.99e-11 60.1
MS.gene80160.t1 MTR_7g082510 30.400 125 77 4 1 122 512 629 2.09e-11 60.1
MS.gene80160.t1 MTR_5g026510 27.559 127 79 3 1 124 469 585 2.27e-11 60.1
MS.gene80160.t1 MTR_1g027440 30.400 125 63 5 1 122 446 549 2.67e-11 59.7
MS.gene80160.t1 MTR_1g026940 31.746 126 71 4 1 122 469 583 2.74e-11 59.7
MS.gene80160.t1 MTR_2g075010 31.304 115 69 3 2 114 821 927 3.59e-11 59.7
MS.gene80160.t1 MTR_2g074820 30.400 125 74 4 2 124 303 416 3.99e-11 59.3
MS.gene80160.t1 MTR_2g074990 30.435 115 70 3 2 114 819 925 4.39e-11 59.3
MS.gene80160.t1 MTR_1g027160 29.688 128 73 7 1 122 168 284 4.84e-11 58.9
MS.gene80160.t1 MTR_1g027460 29.688 128 73 6 1 122 195 311 4.89e-11 58.9
MS.gene80160.t1 MTR_7g082400 32.283 127 73 6 1 122 250 368 4.99e-11 58.9
MS.gene80160.t1 MTR_5g035910 29.167 120 75 3 1 118 511 622 6.20e-11 58.9
MS.gene80160.t1 MTR_1g027930 29.600 125 77 6 1 122 138 254 7.57e-11 58.2
MS.gene80160.t1 MTR_2g075250 29.268 123 77 3 1 121 737 851 7.81e-11 58.5
MS.gene80160.t1 MTR_2g072520 30.357 112 72 1 2 113 191 296 7.85e-11 58.2
MS.gene80160.t1 MTR_2g075250 29.268 123 77 3 1 121 832 946 7.88e-11 58.5
MS.gene80160.t1 MTR_8g101670 30.769 117 71 4 1 115 569 677 8.77e-11 58.5
MS.gene80160.t1 MTR_1g028290 29.600 125 77 5 1 122 455 571 9.98e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80160.t1 AT4G32300 35.484 124 69 3 2 122 659 774 3.27e-17 77.0
MS.gene80160.t1 AT5G03140 34.959 123 79 1 1 123 537 658 8.99e-17 75.5
MS.gene80160.t1 AT1G34300 35.484 124 68 3 2 121 650 765 1.18e-16 75.5
MS.gene80160.t1 AT1G60800 29.565 115 76 1 1 115 401 510 2.33e-15 71.6
MS.gene80160.t1 AT1G60800 29.565 115 76 1 1 115 468 577 2.46e-15 71.6
MS.gene80160.t1 AT1G71830 31.304 115 75 1 1 115 469 579 3.56e-15 70.9
MS.gene80160.t1 AT1G34210 31.304 115 75 1 1 115 472 582 3.73e-15 70.9
MS.gene80160.t1 AT1G34210 31.304 115 75 1 1 115 472 582 3.73e-15 70.9
MS.gene80160.t1 AT4G33430 32.174 115 74 1 1 115 503 613 6.47e-15 70.5
MS.gene80160.t1 AT4G33430 32.174 115 74 1 1 115 456 566 6.47e-15 70.1
MS.gene80160.t1 AT2G19130 32.308 130 68 4 2 123 660 777 6.82e-15 70.1
MS.gene80160.t1 AT3G25560 33.043 115 72 1 1 115 475 584 6.82e-15 70.1
MS.gene80160.t1 AT3G25560 33.043 115 72 1 1 115 476 585 6.82e-15 70.1
MS.gene80160.t1 AT3G25560 33.043 115 72 1 1 115 475 584 6.83e-15 70.1
MS.gene80160.t1 AT3G53380 34.426 122 80 0 1 122 540 661 1.50e-14 69.3
MS.gene80160.t1 AT1G29730 30.508 118 77 1 1 118 805 917 3.26e-14 68.2
MS.gene80160.t1 AT1G29730 30.508 118 77 1 1 118 837 949 3.27e-14 68.2
MS.gene80160.t1 AT1G70250 28.000 125 84 3 1 122 624 745 3.92e-14 68.2
MS.gene80160.t1 AT5G24080 29.268 123 80 2 2 123 570 686 4.21e-14 68.2
MS.gene80160.t1 AT5G24080 29.268 123 80 2 2 123 570 686 4.21e-14 68.2
MS.gene80160.t1 AT5G24080 29.268 123 80 2 2 123 697 813 4.28e-14 68.2
MS.gene80160.t1 AT5G65240 32.479 117 71 3 1 115 451 561 8.26e-14 67.0
MS.gene80160.t1 AT5G65240 32.479 117 71 3 1 115 451 561 8.98e-14 67.0
MS.gene80160.t1 AT2G13800 29.565 115 77 1 1 115 325 435 1.18e-13 66.6
MS.gene80160.t1 AT2G13800 29.565 115 77 1 1 115 325 435 1.18e-13 66.6
MS.gene80160.t1 AT4G00340 35.246 122 63 5 2 114 626 740 1.52e-13 66.2
MS.gene80160.t1 AT3G59740 30.702 114 73 1 1 114 502 609 1.64e-13 66.2
MS.gene80160.t1 AT4G00340 35.246 122 63 5 2 114 647 761 1.67e-13 66.2
MS.gene80160.t1 AT4G02420 30.702 114 74 1 2 115 516 624 1.73e-13 66.2
MS.gene80160.t1 AT1G29740 31.532 111 71 1 1 111 841 946 2.31e-13 65.9
MS.gene80160.t1 AT1G29740 31.532 111 71 1 1 111 841 946 2.32e-13 65.9
MS.gene80160.t1 AT2G13800 29.565 115 77 1 1 115 442 552 2.35e-13 65.9
MS.gene80160.t1 AT2G13800 29.565 115 77 1 1 115 442 552 2.35e-13 65.9
MS.gene80160.t1 AT2G13790 29.565 115 77 1 1 115 461 571 2.36e-13 65.9
MS.gene80160.t1 AT1G11050 35.115 131 71 4 2 125 467 590 2.70e-13 65.5
MS.gene80160.t1 AT1G31420 27.642 123 82 2 2 124 470 585 4.89e-13 65.1
MS.gene80160.t1 AT1G31420 27.642 123 82 2 2 124 471 586 5.18e-13 64.7
MS.gene80160.t1 AT1G31420 27.642 123 82 2 2 124 471 586 5.18e-13 64.7
MS.gene80160.t1 AT5G55830 31.967 122 78 1 1 122 533 649 5.48e-13 64.7
MS.gene80160.t1 AT1G53430 31.200 125 75 4 1 123 794 909 6.33e-13 64.7
MS.gene80160.t1 AT1G53430 31.200 125 75 4 1 123 835 950 6.35e-13 64.7
MS.gene80160.t1 AT1G66980 32.308 130 72 7 1 122 952 1073 6.75e-13 64.7
MS.gene80160.t1 AT1G66980 32.308 130 72 7 1 122 969 1090 6.76e-13 64.7
MS.gene80160.t1 AT1G66980 32.308 130 72 7 1 122 996 1117 6.77e-13 64.7
MS.gene80160.t1 AT1G66980 32.308 130 72 7 1 122 998 1119 6.77e-13 64.7
MS.gene80160.t1 AT4G28350 31.579 114 66 3 2 113 517 620 1.08e-12 63.9
MS.gene80160.t1 AT3G53810 32.540 126 73 4 1 123 512 628 1.24e-12 63.9
MS.gene80160.t1 AT1G53440 30.400 125 76 4 1 123 833 948 1.53e-12 63.5
MS.gene80160.t1 AT5G65600 34.921 126 74 5 2 123 516 637 1.97e-12 63.2
MS.gene80160.t1 AT3G55550 31.250 128 75 4 2 124 513 632 2.61e-12 62.8
MS.gene80160.t1 AT5G10290 29.915 117 74 3 1 115 457 567 2.73e-12 62.8
MS.gene80160.t1 AT5G10290 29.915 117 74 3 1 115 457 567 2.73e-12 62.8
MS.gene80160.t1 AT4G02410 31.579 114 73 1 2 115 521 629 2.81e-12 62.8
MS.gene80160.t1 AT2G32800 33.071 127 73 4 1 123 309 427 2.86e-12 62.8
MS.gene80160.t1 AT3G14840 29.457 129 81 3 2 128 839 959 3.45e-12 62.4
MS.gene80160.t1 AT2G23950 29.565 115 76 1 1 115 462 571 4.08e-12 62.4
MS.gene80160.t1 AT1G29720 30.579 121 74 4 1 119 837 949 4.94e-12 62.0
MS.gene80160.t1 AT1G67520 31.298 131 79 5 2 126 620 745 5.63e-12 62.0
MS.gene80160.t1 AT1G67520 31.298 131 79 5 2 126 670 795 5.66e-12 62.0
MS.gene80160.t1 AT1G67520 31.298 131 79 5 2 126 663 788 5.77e-12 62.0
MS.gene80160.t1 AT5G38260 30.534 131 72 7 1 122 485 605 7.22e-12 61.6
MS.gene80160.t1 AT1G67000 27.273 132 84 5 1 122 721 850 8.00e-12 61.6
MS.gene80160.t1 AT1G67520 31.061 132 80 5 1 126 454 580 8.97e-12 61.2
MS.gene80160.t1 AT1G67520 31.061 132 80 5 1 126 454 580 8.97e-12 61.2
MS.gene80160.t1 AT1G67520 31.061 132 80 5 1 126 425 551 9.45e-12 61.2
MS.gene80160.t1 AT4G18250 34.375 128 74 6 1 122 521 644 9.56e-12 61.2
MS.gene80160.t1 AT1G07650 29.310 116 72 3 1 114 632 739 1.02e-11 61.2
MS.gene80160.t1 AT1G07650 29.310 116 72 3 1 114 819 926 1.04e-11 61.2
MS.gene80160.t1 AT1G07650 29.310 116 72 3 1 114 845 952 1.04e-11 61.2
MS.gene80160.t1 AT1G07650 29.310 116 72 3 1 114 851 958 1.04e-11 61.2
MS.gene80160.t1 AT2G16750 27.966 118 79 2 2 119 441 552 1.46e-11 60.8
MS.gene80160.t1 AT2G16750 27.966 118 79 2 2 119 441 552 1.46e-11 60.8
MS.gene80160.t1 AT4G11480 28.571 126 82 4 2 124 488 608 1.65e-11 60.5
MS.gene80160.t1 AT4G11480 28.571 126 82 4 2 124 491 611 1.65e-11 60.5
MS.gene80160.t1 AT4G11480 28.571 126 82 4 2 124 496 616 1.65e-11 60.5
MS.gene80160.t1 AT5G38280 29.839 124 80 5 2 122 497 616 3.13e-11 59.7
MS.gene80160.t1 AT5G38280 29.839 124 80 5 2 122 497 616 3.13e-11 59.7
MS.gene80160.t1 AT4G35030 32.727 110 68 2 2 111 132 235 4.51e-11 58.9
MS.gene80160.t1 AT5G63940 29.661 118 77 2 2 119 529 640 4.92e-11 59.3
MS.gene80160.t1 AT1G14370 32.520 123 72 4 2 121 261 375 6.90e-11 58.5
MS.gene80160.t1 AT5G39020 28.800 125 80 4 1 122 660 778 8.02e-11 58.5
MS.gene80160.t1 AT3G13690 31.034 116 70 3 2 115 577 684 8.77e-11 58.5
MS.gene80160.t1 AT3G13690 31.034 116 70 3 2 115 577 684 8.77e-11 58.5
MS.gene80160.t1 AT3G13690 31.034 116 70 3 2 115 577 684 8.77e-11 58.5
MS.gene80160.t1 AT4G35030 32.727 110 68 2 2 111 273 376 9.89e-11 58.2
MS.gene80160.t1 AT4G35030 32.727 110 68 2 2 111 273 376 9.89e-11 58.2
MS.gene80160.t1 AT4G35030 32.727 110 68 2 2 111 273 376 9.89e-11 58.2
MS.gene80160.t1 AT4G35030 32.727 110 68 2 2 111 273 376 9.89e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATAGATGGCCTAATAAT+TGG 0.179313 3.4:-92276739 None:intergenic
TTATAGATTGGGTTCTATAT+TGG 0.218702 3.4:+92276605 MS.gene80160:CDS
TATAGATTGGGTTCTATATT+GGG 0.279264 3.4:+92276606 MS.gene80160:CDS
GATGGCCTAATAATTGGATT+AGG 0.304889 3.4:-92276733 None:intergenic
TGTGCCCTAATCCAATTATT+AGG 0.308361 3.4:+92276728 MS.gene80160:CDS
TGCAACACCTTTGCAATAGA+TGG 0.340385 3.4:-92276751 None:intergenic
ATGACATGATACTTATAGAT+TGG 0.369608 3.4:+92276593 MS.gene80160:CDS
AGTGTTCCACCATTGTTTGA+TGG 0.394571 3.4:+92276799 MS.gene80160:CDS
AAGTTGTTAATGATTTCATT+AGG 0.396201 3.4:+92276671 MS.gene80160:CDS
TAGAGGGACAATGGGATGTT+TGG 0.414762 3.4:+92276435 None:intergenic
ATGGCCTAATAATTGGATTA+GGG 0.442397 3.4:-92276732 None:intergenic
TAGGTTTGAGAGAATGACTA+TGG 0.451333 3.4:+92276690 MS.gene80160:CDS
TGACATGATACTTATAGATT+GGG 0.452945 3.4:+92276594 MS.gene80160:CDS
GGTTCTATATTGGGCAAAAG+AGG 0.465154 3.4:+92276615 MS.gene80160:CDS
GAATTGCATCAAGTTGAAGA+TGG 0.493224 3.4:+92276556 MS.gene80160:CDS
TGCACCTATCACTGCAAAAG+TGG 0.498118 3.4:+92276477 MS.gene80160:CDS
AAAGTGGATATCTACAGCTT+TGG 0.498218 3.4:+92276493 MS.gene80160:CDS
TTTGAGAGAATGACTATGGT+TGG 0.507037 3.4:+92276694 MS.gene80160:CDS
GTTCTATATTGGGCAAAAGA+GGG 0.512150 3.4:+92276616 MS.gene80160:CDS
CATTAACAACTTCAACATCA+TGG 0.537170 3.4:-92276660 None:intergenic
TGCAAAGGTGTTGCAGATGT+CGG 0.550893 3.4:+92276759 MS.gene80160:CDS
CAAGTTGAAGATGGAACAGA+AGG 0.575586 3.4:+92276565 MS.gene80160:CDS
TATTAGGCCATCTATTGCAA+AGG 0.594426 3.4:+92276744 MS.gene80160:CDS
TTCTATATTGGGCAAAAGAG+GGG 0.600711 3.4:+92276617 MS.gene80160:CDS
TGGGATGTTTGGTACCAGAA+TGG 0.601392 3.4:+92276446 MS.gene80160:CDS
AAGGTGTTGCAGATGTCGGA+AGG 0.614948 3.4:+92276763 MS.gene80160:CDS
GTTGAAGATGGAACAGAAGG+TGG 0.634859 3.4:+92276568 MS.gene80160:CDS
GAATGACTATGGTTGGACTG+TGG 0.741878 3.4:+92276701 MS.gene80160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTGTTAATGATTTCATT+AGG + chr3.4:92276671-92276690 MS.gene80160:CDS 20.0%
!!! AAAATTTTTCCATCAAACAA+TGG - chr3.4:92276811-92276830 None:intergenic 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG + chr3.4:92276527-92276546 MS.gene80160:CDS 20.0%
! ATGACATGATACTTATAGAT+TGG + chr3.4:92276593-92276612 MS.gene80160:CDS 25.0%
! TATAGATTGGGTTCTATATT+GGG + chr3.4:92276606-92276625 MS.gene80160:CDS 25.0%
! TGACATGATACTTATAGATT+GGG + chr3.4:92276594-92276613 MS.gene80160:CDS 25.0%
! TTATAGATTGGGTTCTATAT+TGG + chr3.4:92276605-92276624 MS.gene80160:CDS 25.0%
ATGGCCTAATAATTGGATTA+GGG - chr3.4:92276735-92276754 None:intergenic 30.0%
CATTAACAACTTCAACATCA+TGG - chr3.4:92276663-92276682 None:intergenic 30.0%
! ATTTTTCCATCAAACAATGG+TGG - chr3.4:92276808-92276827 None:intergenic 30.0%
AAAGTGGATATCTACAGCTT+TGG + chr3.4:92276493-92276512 MS.gene80160:CDS 35.0%
GATGGCCTAATAATTGGATT+AGG - chr3.4:92276736-92276755 None:intergenic 35.0%
GCAATAGATGGCCTAATAAT+TGG - chr3.4:92276742-92276761 None:intergenic 35.0%
GTTCTATATTGGGCAAAAGA+GGG + chr3.4:92276616-92276635 MS.gene80160:CDS 35.0%
TAGGTTTGAGAGAATGACTA+TGG + chr3.4:92276690-92276709 MS.gene80160:CDS 35.0%
TATTAGGCCATCTATTGCAA+AGG + chr3.4:92276744-92276763 MS.gene80160:CDS 35.0%
TGTGCCCTAATCCAATTATT+AGG + chr3.4:92276728-92276747 MS.gene80160:CDS 35.0%
TTCTATATTGGGCAAAAGAG+GGG + chr3.4:92276617-92276636 MS.gene80160:CDS 35.0%
TTTGAGAGAATGACTATGGT+TGG + chr3.4:92276694-92276713 MS.gene80160:CDS 35.0%
!! ATATCCACTTTTGCAGTGAT+AGG - chr3.4:92276484-92276503 None:intergenic 35.0%
!! GAATTGCATCAAGTTGAAGA+TGG + chr3.4:92276556-92276575 MS.gene80160:CDS 35.0%
AGTGTTCCACCATTGTTTGA+TGG + chr3.4:92276799-92276818 MS.gene80160:CDS 40.0%
GGTTCTATATTGGGCAAAAG+AGG + chr3.4:92276615-92276634 MS.gene80160:CDS 40.0%
TGCAACACCTTTGCAATAGA+TGG - chr3.4:92276754-92276773 None:intergenic 40.0%
! CAAGTTGAAGATGGAACAGA+AGG + chr3.4:92276565-92276584 MS.gene80160:CDS 40.0%
GAATGACTATGGTTGGACTG+TGG + chr3.4:92276701-92276720 MS.gene80160:CDS 45.0%
GTTGAAGATGGAACAGAAGG+TGG + chr3.4:92276568-92276587 MS.gene80160:CDS 45.0%
TGCACCTATCACTGCAAAAG+TGG + chr3.4:92276477-92276496 MS.gene80160:CDS 45.0%
TGGGATGTTTGGTACCAGAA+TGG + chr3.4:92276446-92276465 MS.gene80160:CDS 45.0%
!! GGTGCATTTTTGAGCCATTC+TGG - chr3.4:92276463-92276482 None:intergenic 45.0%
!! TGCAAAGGTGTTGCAGATGT+CGG + chr3.4:92276759-92276778 MS.gene80160:CDS 45.0%
!! AAGGTGTTGCAGATGTCGGA+AGG + chr3.4:92276763-92276782 MS.gene80160:CDS 50.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 92276445 92276834 92276445 ID=MS.gene80160
chr3.4 mRNA 92276445 92276834 92276445 ID=MS.gene80160.t1;Parent=MS.gene80160
chr3.4 exon 92276445 92276834 92276445 ID=MS.gene80160.t1.exon1;Parent=MS.gene80160.t1
chr3.4 CDS 92276445 92276834 92276445 ID=cds.MS.gene80160.t1;Parent=MS.gene80160.t1
Gene Sequence

>MS.gene80160

ATGGGATGTTTGGTACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAGTGGATATCTACAGCTTTGGTGTCATGTTGCTTGAAATCTTATTTTGTAGAAGGCACATTGAATTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTAAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGCTTGTGCCCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGTTGCAGATGTCGGAAGGAGATTTTGAAGTTAGTGTTCCACCATTGTTTGATGGAAAAATTTTGTAA
Protein sequence

>MS.gene80160.t1

MGCLVPEWLKNAPITAKVDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFERMTMVGLWCLCPNPIIRPSIAKVLQMSEGDFEVSVPPLFDGKIL