Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80206.t1 | PNX80761.1 | 73.8 | 271 | 64 | 1 | 87 | 357 | 31 | 294 | 4.90E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80206.t1 | Q9SZL8 | 35.0 | 254 | 154 | 6 | 109 | 355 | 77 | 326 | 1.2e-31 | 139.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80206.t1 | A0A2K3LQE0 | 73.8 | 271 | 64 | 1 | 87 | 357 | 31 | 294 | 3.5e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80206.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80206.t1 | MTR_3g080590 | 89.032 | 155 | 17 | 0 | 1 | 155 | 1 | 155 | 1.13e-84 | 256 |
| MS.gene80206.t1 | MTR_7g446520 | 47.934 | 242 | 111 | 2 | 98 | 339 | 81 | 307 | 4.41e-68 | 219 |
| MS.gene80206.t1 | MTR_7g446480 | 56.000 | 175 | 77 | 0 | 179 | 353 | 140 | 314 | 2.94e-61 | 201 |
| MS.gene80206.t1 | MTR_7g446510 | 54.749 | 179 | 81 | 0 | 179 | 357 | 155 | 333 | 1.72e-58 | 194 |
| MS.gene80206.t1 | MTR_1g070355 | 35.294 | 238 | 149 | 3 | 105 | 339 | 74 | 309 | 9.97e-40 | 149 |
| MS.gene80206.t1 | MTR_6g051425 | 32.800 | 250 | 157 | 5 | 112 | 353 | 24 | 270 | 3.10e-34 | 130 |
| MS.gene80206.t1 | MTR_5g076070 | 28.175 | 252 | 164 | 4 | 85 | 333 | 45 | 282 | 5.46e-32 | 123 |
| MS.gene80206.t1 | MTR_7g028855 | 43.709 | 151 | 82 | 1 | 98 | 245 | 113 | 263 | 7.03e-32 | 126 |
| MS.gene80206.t1 | MTR_4g035820 | 33.603 | 247 | 153 | 6 | 111 | 349 | 81 | 324 | 2.78e-30 | 123 |
| MS.gene80206.t1 | MTR_3g450850 | 30.769 | 247 | 158 | 5 | 111 | 345 | 53 | 298 | 6.48e-25 | 105 |
| MS.gene80206.t1 | MTR_0558s0020 | 26.374 | 273 | 179 | 5 | 93 | 344 | 24 | 295 | 6.49e-22 | 95.5 |
| MS.gene80206.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 1.41e-18 | 85.1 |
| MS.gene80206.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 7.51e-17 | 75.1 |
| MS.gene80206.t1 | MTR_8g446020 | 27.586 | 203 | 134 | 3 | 154 | 344 | 54 | 255 | 5.63e-16 | 77.8 |
| MS.gene80206.t1 | MTR_6g090505 | 27.358 | 212 | 133 | 5 | 151 | 344 | 22 | 230 | 1.65e-14 | 74.7 |
| MS.gene80206.t1 | MTR_0402s0040 | 30.460 | 174 | 116 | 5 | 108 | 278 | 29 | 200 | 5.99e-14 | 73.9 |
| MS.gene80206.t1 | MTR_1g008290 | 30.952 | 126 | 82 | 2 | 172 | 297 | 20 | 140 | 2.19e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80206.t1 | AT4G38180 | 32.424 | 330 | 210 | 8 | 33 | 355 | 3 | 326 | 5.46e-36 | 140 |
| MS.gene80206.t1 | AT5G28530 | 33.716 | 261 | 157 | 5 | 111 | 356 | 61 | 320 | 4.30e-33 | 132 |
| MS.gene80206.t1 | AT5G28530 | 33.716 | 261 | 157 | 5 | 111 | 356 | 61 | 320 | 5.03e-33 | 131 |
| MS.gene80206.t1 | AT5G28530 | 33.716 | 261 | 157 | 5 | 111 | 356 | 61 | 320 | 5.03e-33 | 131 |
| MS.gene80206.t1 | AT1G10240 | 33.077 | 260 | 156 | 8 | 111 | 359 | 54 | 306 | 5.81e-29 | 119 |
| MS.gene80206.t1 | AT1G10240 | 33.077 | 260 | 156 | 8 | 111 | 359 | 54 | 306 | 5.81e-29 | 119 |
| MS.gene80206.t1 | AT4G15090 | 30.000 | 300 | 187 | 8 | 109 | 402 | 55 | 337 | 1.33e-26 | 113 |
| MS.gene80206.t1 | AT4G15090 | 30.000 | 300 | 187 | 8 | 109 | 402 | 55 | 337 | 1.33e-26 | 113 |
| MS.gene80206.t1 | AT4G15090 | 30.000 | 300 | 187 | 8 | 109 | 402 | 55 | 337 | 1.33e-26 | 113 |
| MS.gene80206.t1 | AT4G15090 | 30.000 | 300 | 187 | 8 | 109 | 402 | 55 | 337 | 1.33e-26 | 113 |
| MS.gene80206.t1 | AT4G15090 | 30.000 | 300 | 187 | 8 | 109 | 402 | 55 | 337 | 1.33e-26 | 113 |
| MS.gene80206.t1 | AT3G06250 | 28.664 | 307 | 161 | 9 | 109 | 411 | 194 | 446 | 4.39e-22 | 99.4 |
| MS.gene80206.t1 | AT3G06250 | 28.664 | 307 | 161 | 9 | 109 | 411 | 194 | 446 | 4.39e-22 | 99.4 |
| MS.gene80206.t1 | AT3G06250 | 28.664 | 307 | 161 | 9 | 109 | 411 | 194 | 446 | 4.39e-22 | 99.4 |
| MS.gene80206.t1 | AT4G19990 | 29.392 | 296 | 148 | 10 | 83 | 355 | 6 | 263 | 5.49e-21 | 95.9 |
| MS.gene80206.t1 | AT4G19990 | 29.885 | 261 | 131 | 8 | 110 | 355 | 26 | 249 | 1.05e-20 | 95.1 |
| MS.gene80206.t1 | AT4G19990 | 29.885 | 261 | 131 | 8 | 110 | 355 | 26 | 249 | 1.05e-20 | 95.1 |
| MS.gene80206.t1 | AT4G19990 | 29.885 | 261 | 131 | 8 | 110 | 355 | 26 | 249 | 1.20e-20 | 95.1 |
| MS.gene80206.t1 | AT4G19990 | 29.885 | 261 | 131 | 8 | 110 | 355 | 26 | 249 | 1.29e-20 | 94.7 |
| MS.gene80206.t1 | AT4G19990 | 29.885 | 261 | 131 | 8 | 110 | 355 | 26 | 249 | 1.29e-20 | 94.7 |
| MS.gene80206.t1 | AT1G52520 | 29.528 | 254 | 158 | 6 | 109 | 357 | 89 | 326 | 6.09e-20 | 92.8 |
| MS.gene80206.t1 | AT5G28530 | 33.333 | 177 | 112 | 4 | 111 | 282 | 61 | 236 | 2.49e-19 | 90.9 |
| MS.gene80206.t1 | AT5G28530 | 33.333 | 177 | 112 | 4 | 111 | 282 | 61 | 236 | 2.76e-19 | 90.5 |
| MS.gene80206.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 109 | 353 | 1 | 237 | 5.13e-19 | 89.7 |
| MS.gene80206.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 109 | 353 | 1 | 237 | 5.61e-19 | 89.7 |
| MS.gene80206.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 109 | 353 | 1 | 237 | 5.61e-19 | 89.7 |
| MS.gene80206.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 109 | 353 | 1 | 237 | 5.86e-19 | 89.7 |
| MS.gene80206.t1 | AT3G22170 | 24.528 | 265 | 161 | 5 | 104 | 353 | 69 | 309 | 1.61e-18 | 88.6 |
| MS.gene80206.t1 | AT3G22170 | 24.528 | 265 | 161 | 5 | 104 | 353 | 69 | 309 | 1.61e-18 | 88.6 |
| MS.gene80206.t1 | AT1G80010 | 29.352 | 293 | 165 | 13 | 84 | 356 | 79 | 349 | 2.57e-18 | 87.8 |
| MS.gene80206.t1 | AT2G27110 | 25.296 | 253 | 153 | 5 | 109 | 356 | 53 | 274 | 4.42e-18 | 87.0 |
| MS.gene80206.t1 | AT2G27110 | 25.296 | 253 | 153 | 5 | 109 | 356 | 53 | 274 | 4.42e-18 | 87.0 |
| MS.gene80206.t1 | AT5G18960 | 28.745 | 247 | 137 | 7 | 109 | 353 | 215 | 424 | 5.98e-18 | 86.7 |
| MS.gene80206.t1 | AT5G18960 | 28.745 | 247 | 137 | 7 | 109 | 353 | 215 | 424 | 5.98e-18 | 86.7 |
| MS.gene80206.t1 | AT4G19990 | 45.783 | 83 | 45 | 0 | 273 | 355 | 110 | 192 | 8.22e-18 | 86.3 |
| MS.gene80206.t1 | AT2G27110 | 40.506 | 79 | 47 | 0 | 278 | 356 | 51 | 129 | 4.82e-13 | 71.6 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 3.67e-12 | 68.9 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 3.67e-12 | 68.9 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 3.74e-12 | 68.6 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 4.05e-12 | 68.6 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 4.05e-12 | 68.6 |
| MS.gene80206.t1 | AT2G32250 | 26.515 | 264 | 131 | 8 | 101 | 353 | 33 | 244 | 4.05e-12 | 68.6 |
| MS.gene80206.t1 | AT2G32250 | 26.667 | 255 | 125 | 7 | 109 | 353 | 1 | 203 | 4.63e-12 | 68.6 |
| MS.gene80206.t1 | AT2G32250 | 26.667 | 255 | 125 | 7 | 109 | 353 | 1 | 203 | 4.75e-12 | 68.6 |
| MS.gene80206.t1 | AT4G38170 | 55.319 | 47 | 20 | 1 | 310 | 355 | 45 | 91 | 5.44e-11 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACTTTGAGTTACTTCC+AGG | 0.237219 | 3.4:+92717575 | MS.gene80206:CDS |
| TCACTCAATTTGCGGTAATT+AGG | 0.258248 | 3.4:-92717378 | None:intergenic |
| TTCATCAGCAATAGGGCTTT+TGG | 0.277004 | 3.4:-92718693 | None:intergenic |
| TCCATACTTGTTCTTTCTAT+AGG | 0.305560 | 3.4:-92717736 | None:intergenic |
| GAAGATTCTTCATCAGCAAT+AGG | 0.315268 | 3.4:-92718701 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 3.4:+92717494 | MS.gene80206:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 3.4:-92717488 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 3.4:+92717041 | MS.gene80206:CDS |
| ACCTATAGAAAGAACAAGTA+TGG | 0.349144 | 3.4:+92717735 | MS.gene80206:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 3.4:+92717289 | MS.gene80206:CDS |
| TATTGCTGATGGCGGCTCGC+TGG | 0.361638 | 3.4:+92718744 | MS.gene80206:CDS |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 3.4:+92717034 | MS.gene80206:CDS |
| GAGTTTACATTTACAGATGA+TGG | 0.367609 | 3.4:+92717630 | MS.gene80206:CDS |
| AGGTTTGACTATGAGTGTTT+TGG | 0.377109 | 3.4:+92717690 | MS.gene80206:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.384991 | 3.4:+92717440 | MS.gene80206:CDS |
| TGGGTATAACACGACACTTT+TGG | 0.385145 | 3.4:-92718767 | None:intergenic |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 3.4:+92717521 | MS.gene80206:CDS |
| TTTGGGCAGATTCTACTAGT+AGG | 0.409763 | 3.4:+92717670 | MS.gene80206:CDS |
| TGCGGTAATTAGGCATCAAA+TGG | 0.435720 | 3.4:-92717368 | None:intergenic |
| AATAGCGTGCTATAGGAGTA+TGG | 0.437326 | 3.4:-92718807 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 3.4:-92717250 | None:intergenic |
| TATCAACTTCACTCAATTTG+CGG | 0.446828 | 3.4:-92717386 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 3.4:+92717480 | MS.gene80206:CDS |
| AAGATTCTTCATCAGCAATA+GGG | 0.456407 | 3.4:-92718700 | None:intergenic |
| GCAAGGGTTAAAATAAAAGA+TGG | 0.464290 | 3.4:+92717543 | MS.gene80206:CDS |
| ATACTTGTTCTTTCTATAGG+TGG | 0.464692 | 3.4:-92717733 | None:intergenic |
| GTAAGAACATGTCATATCTT+GGG | 0.467321 | 3.4:+92717441 | MS.gene80206:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 3.4:+92717176 | MS.gene80206:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 3.4:-92717341 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 3.4:-92717236 | None:intergenic |
| CCCCTTTACCCCTATGGCAA+GGG | 0.471821 | 3.4:-92717806 | None:intergenic |
| TTTGAGTTACTTCCAGGGTA+AGG | 0.478060 | 3.4:+92717581 | MS.gene80206:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 3.4:+92716994 | MS.gene80206:CDS |
| GGCAAGGGGTTGTTTCTCCA+TGG | 0.482176 | 3.4:-92717791 | None:intergenic |
| ATGTGAAACGTGATTCTAAT+GGG | 0.492055 | 3.4:+92717142 | MS.gene80206:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 3.4:+92717512 | MS.gene80206:CDS |
| ATATAACCCCTTTACCCCTA+TGG | 0.505461 | 3.4:-92717812 | None:intergenic |
| AGGACCGAGTCCAAGATGAT+AGG | 0.507972 | 3.4:+92718659 | MS.gene80206:CDS |
| GTATCACTATATACATCAAA+AGG | 0.509968 | 3.4:-92716763 | None:intergenic |
| CAAGGGTTAAAATAAAAGAT+GGG | 0.510385 | 3.4:+92717544 | MS.gene80206:CDS |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 3.4:+92717474 | MS.gene80206:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 3.4:+92717116 | MS.gene80206:CDS |
| GATGTGAAACGTGATTCTAA+TGG | 0.514927 | 3.4:+92717141 | MS.gene80206:CDS |
| AGCAACGATGTTCGTACTGA+TGG | 0.519052 | 3.4:+92716922 | MS.gene80206:CDS |
| GTTTGCTAAGCTCAGCAAGA+AGG | 0.522272 | 3.4:+92718639 | MS.gene80206:intron |
| GAGAAACAACCCCTTGCCAT+AGG | 0.525206 | 3.4:+92717796 | MS.gene80206:CDS |
| TTGCAAGCCGCCTATCATCT+TGG | 0.527236 | 3.4:-92718669 | None:intergenic |
| AGAAACAACCCCTTGCCATA+GGG | 0.527759 | 3.4:+92717797 | MS.gene80206:CDS |
| GCCGCCTATCATCTTGGACT+CGG | 0.531147 | 3.4:-92718663 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 3.4:+92717192 | MS.gene80206:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 3.4:-92717331 | None:intergenic |
| TGGTAGCGACTAGCAGTGGT+TGG | 0.553705 | 3.4:-92718787 | None:intergenic |
| AAGGGGTTGTTTCTCCATGG+TGG | 0.566504 | 3.4:-92717788 | None:intergenic |
| ACCCCTTTACCCCTATGGCA+AGG | 0.568144 | 3.4:-92717807 | None:intergenic |
| CGAGCCGCCATCAGCAATAG+CGG | 0.571864 | 3.4:-92718740 | None:intergenic |
| TATTGTTTGCAAAATACCAC+GGG | 0.576217 | 3.4:+92717100 | MS.gene80206:CDS |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 3.4:+92716958 | MS.gene80206:CDS |
| CCCTTTACCCCTATGGCAAG+GGG | 0.579715 | 3.4:-92717805 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 3.4:+92717035 | MS.gene80206:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 3.4:-92717330 | None:intergenic |
| TATCAGTATCAGCCTTACCC+TGG | 0.582368 | 3.4:-92717593 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 3.4:+92717179 | MS.gene80206:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 3.4:+92717481 | MS.gene80206:CDS |
| CTATTGTTTGCAAAATACCA+CGG | 0.588377 | 3.4:+92717099 | MS.gene80206:CDS |
| GGTAGCGACTAGCAGTGGTT+GGG | 0.589687 | 3.4:-92718786 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 3.4:+92717526 | MS.gene80206:CDS |
| ATATAGTGATACAGATGAGG+TGG | 0.607738 | 3.4:+92716774 | MS.gene80206:CDS |
| GCTACTTTGAGTTACTTCCA+GGG | 0.608783 | 3.4:+92717576 | MS.gene80206:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 3.4:+92716820 | MS.gene80206:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 3.4:+92717402 | MS.gene80206:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 3.4:+92716825 | MS.gene80206:CDS |
| AAGGGTTAAAATAAAAGATG+GGG | 0.619179 | 3.4:+92717545 | MS.gene80206:CDS |
| GAAACAACCCCTTGCCATAG+GGG | 0.626017 | 3.4:+92717798 | MS.gene80206:CDS |
| TGTGCAACCGCTATTGCTGA+TGG | 0.635045 | 3.4:+92718733 | MS.gene80206:CDS |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 3.4:+92717527 | MS.gene80206:CDS |
| TTTAGTGGATATAACCACCA+TGG | 0.638528 | 3.4:+92717774 | MS.gene80206:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 3.4:-92717116 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 3.4:-92716969 | None:intergenic |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 3.4:+92716976 | MS.gene80206:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 3.4:+92717417 | MS.gene80206:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 3.4:-92717354 | None:intergenic |
| ACCGAGTCCAAGATGATAGG+CGG | 0.653379 | 3.4:+92718662 | MS.gene80206:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 3.4:+92716977 | MS.gene80206:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 3.4:+92716939 | MS.gene80206:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 3.4:+92716821 | MS.gene80206:CDS |
| AGTATGGTAGCGACTAGCAG+TGG | 0.667677 | 3.4:-92718791 | None:intergenic |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 3.4:+92717180 | MS.gene80206:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 3.4:+92716952 | MS.gene80206:CDS |
| TGTATATAGTGATACAGATG+AGG | 0.703043 | 3.4:+92716771 | MS.gene80206:CDS |
| GCAACCGCTATTGCTGATGG+CGG | 0.710760 | 3.4:+92718736 | MS.gene80206:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 3.4:+92716934 | MS.gene80206:CDS |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 3.4:+92716822 | MS.gene80206:CDS |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 3.4:+92717056 | MS.gene80206:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTTTTTTTTTTGAAT+CGG | - | chr3.4:92717956-92717975 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr3.4:92718166-92718185 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr3.4:92718167-92718186 | None:intergenic | 10.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr3.4:92717512-92717531 | MS.gene80206:CDS | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr3.4:92718614-92718633 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr3.4:92718285-92718304 | MS.gene80206:intron | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr3.4:92718018-92718037 | MS.gene80206:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr3.4:92718286-92718305 | MS.gene80206:intron | 20.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr3.4:92717545-92717564 | MS.gene80206:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr3.4:92717766-92717785 | None:intergenic | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr3.4:92717544-92717563 | MS.gene80206:CDS | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr3.4:92718040-92718059 | MS.gene80206:intron | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr3.4:92717210-92717229 | MS.gene80206:CDS | 25.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr3.4:92716766-92716785 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr3.4:92717767-92717786 | None:intergenic | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr3.4:92718322-92718341 | None:intergenic | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr3.4:92718287-92718306 | MS.gene80206:intron | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr3.4:92718383-92718402 | MS.gene80206:intron | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr3.4:92717885-92717904 | MS.gene80206:intron | 25.0% |
| AAGATTCTTCATCAGCAATA+GGG | - | chr3.4:92718703-92718722 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr3.4:92717735-92717754 | MS.gene80206:CDS | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr3.4:92718241-92718260 | None:intergenic | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr3.4:92717041-92717060 | MS.gene80206:CDS | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr3.4:92717736-92717755 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr3.4:92717521-92717540 | MS.gene80206:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr3.4:92717142-92717161 | MS.gene80206:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr3.4:92717034-92717053 | MS.gene80206:CDS | 30.0% | |
| CAAAATTTATTAAGCCAAGG+AGG | - | chr3.4:92717933-92717952 | None:intergenic | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr3.4:92717180-92717199 | MS.gene80206:CDS | 30.0% | |
| CTATTGTTTGCAAAATACCA+CGG | + | chr3.4:92717099-92717118 | MS.gene80206:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr3.4:92717630-92717649 | MS.gene80206:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr3.4:92717543-92717562 | MS.gene80206:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr3.4:92717441-92717460 | MS.gene80206:CDS | 30.0% | |
| TATCAACTTCACTCAATTTG+CGG | - | chr3.4:92717389-92717408 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr3.4:92717765-92717784 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr3.4:92717100-92717119 | MS.gene80206:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr3.4:92717179-92717198 | MS.gene80206:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr3.4:92717739-92717758 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr3.4:92717440-92717459 | MS.gene80206:CDS | 30.0% | |
| TGTATATAGTGATACAGATG+AGG | + | chr3.4:92716771-92716790 | MS.gene80206:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr3.4:92717035-92717054 | MS.gene80206:CDS | 30.0% | |
| ! | ATGTGGTTGATTCATGTAAT+TGG | - | chr3.4:92718440-92718459 | None:intergenic | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr3.4:92717653-92717672 | MS.gene80206:CDS | 30.0% |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr3.4:92717826-92717845 | MS.gene80206:intron | 30.0% |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr3.4:92718411-92718430 | MS.gene80206:intron | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr3.4:92717494-92717513 | MS.gene80206:CDS | 35.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr3.4:92716774-92716793 | MS.gene80206:CDS | 35.0% | |
| ATATATGCAGAACACCTCAA+TGG | - | chr3.4:92717859-92717878 | None:intergenic | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr3.4:92717357-92717376 | None:intergenic | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr3.4:92718427-92718446 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr3.4:92717892-92717911 | MS.gene80206:intron | 35.0% | |
| CGGCAAAATTTATTAAGCCA+AGG | - | chr3.4:92717936-92717955 | None:intergenic | 35.0% | |
| GAAGATTCTTCATCAGCAAT+AGG | - | chr3.4:92718704-92718723 | None:intergenic | 35.0% | |
| GATGTGAAACGTGATTCTAA+TGG | + | chr3.4:92717141-92717160 | MS.gene80206:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr3.4:92717176-92717195 | MS.gene80206:CDS | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr3.4:92716958-92716977 | MS.gene80206:CDS | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr3.4:92717984-92718003 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr3.4:92717381-92717400 | None:intergenic | 35.0% | |
| TTACATGAATCAACCACATC+AGG | + | chr3.4:92718441-92718460 | MS.gene80206:intron | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr3.4:92716821-92716840 | MS.gene80206:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr3.4:92717690-92717709 | MS.gene80206:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr3.4:92717453-92717472 | MS.gene80206:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr3.4:92717659-92717678 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr3.4:92717402-92717421 | MS.gene80206:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr3.4:92717452-92717471 | MS.gene80206:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr3.4:92717774-92717793 | MS.gene80206:CDS | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr3.4:92717192-92717211 | MS.gene80206:CDS | 35.0% |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr3.4:92718502-92718521 | None:intergenic | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr3.4:92717759-92717778 | MS.gene80206:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr3.4:92717652-92717671 | MS.gene80206:CDS | 35.0% |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr3.4:92717344-92717363 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr3.4:92716976-92716995 | MS.gene80206:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr3.4:92717289-92717308 | MS.gene80206:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr3.4:92717334-92717353 | None:intergenic | 40.0% | |
| AGGGGTAAAGGGGTTATATA+TGG | + | chr3.4:92717816-92717835 | MS.gene80206:intron | 40.0% | |
| ATATAACCCCTTTACCCCTA+TGG | - | chr3.4:92717815-92717834 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr3.4:92716977-92716996 | MS.gene80206:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr3.4:92716994-92717013 | MS.gene80206:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr3.4:92716972-92716991 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr3.4:92717253-92717272 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr3.4:92717333-92717352 | None:intergenic | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr3.4:92717056-92717075 | MS.gene80206:CDS | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr3.4:92717491-92717510 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr3.4:92717371-92717390 | None:intergenic | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr3.4:92718426-92718445 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr3.4:92717239-92717258 | None:intergenic | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr3.4:92717670-92717689 | MS.gene80206:CDS | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr3.4:92716822-92716841 | MS.gene80206:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr3.4:92716820-92716839 | MS.gene80206:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr3.4:92717576-92717595 | MS.gene80206:CDS | 40.0% |
| ! | TGGGTATAACACGACACTTT+TGG | - | chr3.4:92718770-92718789 | None:intergenic | 40.0% |
| ! | TTCATCAGCAATAGGGCTTT+TGG | - | chr3.4:92718696-92718715 | None:intergenic | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr3.4:92717581-92717600 | MS.gene80206:CDS | 40.0% |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr3.4:92717462-92717481 | MS.gene80206:CDS | 40.0% |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr3.4:92717575-92717594 | MS.gene80206:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr3.4:92717465-92717484 | MS.gene80206:CDS | 40.0% |
| AGAAACAACCCCTTGCCATA+GGG | + | chr3.4:92717797-92717816 | MS.gene80206:CDS | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr3.4:92717981-92718000 | None:intergenic | 45.0% | |
| AGCAACGATGTTCGTACTGA+TGG | + | chr3.4:92716922-92716941 | MS.gene80206:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr3.4:92717855-92717874 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr3.4:92717526-92717545 | MS.gene80206:CDS | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr3.4:92717119-92717138 | None:intergenic | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr3.4:92717898-92717917 | MS.gene80206:intron | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr3.4:92716952-92716971 | MS.gene80206:CDS | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr3.4:92717912-92717931 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr3.4:92718425-92718444 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr3.4:92718424-92718443 | None:intergenic | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr3.4:92717596-92717615 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr3.4:92717856-92717875 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr3.4:92717897-92717916 | MS.gene80206:intron | 45.0% | |
| TTGGGTTTCTTTCACCTCCT+TGG | + | chr3.4:92717916-92717935 | MS.gene80206:intron | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr3.4:92717527-92717546 | MS.gene80206:CDS | 45.0% | |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr3.4:92717116-92717135 | MS.gene80206:CDS | 45.0% |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr3.4:92718639-92718658 | MS.gene80206:intron | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr3.4:92716825-92716844 | MS.gene80206:CDS | 45.0% |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr3.4:92717461-92717480 | MS.gene80206:CDS | 45.0% |
| ACCGAGTCCAAGATGATAGG+CGG | + | chr3.4:92718662-92718681 | MS.gene80206:CDS | 50.0% | |
| AGGACCGAGTCCAAGATGAT+AGG | + | chr3.4:92718659-92718678 | MS.gene80206:CDS | 50.0% | |
| GAAACAACCCCTTGCCATAG+GGG | + | chr3.4:92717798-92717817 | MS.gene80206:CDS | 50.0% | |
| GAATCAACCACATCAGGCCT+CGG | + | chr3.4:92718447-92718466 | MS.gene80206:intron | 50.0% | |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr3.4:92717796-92717815 | MS.gene80206:CDS | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr3.4:92717417-92717436 | MS.gene80206:CDS | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr3.4:92718733-92718752 | MS.gene80206:CDS | 50.0% | |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr3.4:92718672-92718691 | None:intergenic | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr3.4:92718794-92718813 | None:intergenic | 50.0% |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr3.4:92716934-92716953 | MS.gene80206:CDS | 50.0% |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr3.4:92717791-92717810 | None:intergenic | 50.0% |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr3.4:92717842-92717861 | MS.gene80206:intron | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr3.4:92717480-92717499 | MS.gene80206:CDS | 55.0% | |
| ACCCCTTGCCATAGGGGTAA+AGG | + | chr3.4:92717804-92717823 | MS.gene80206:intron | 55.0% | |
| ACCCCTTTACCCCTATGGCA+AGG | - | chr3.4:92717810-92717829 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr3.4:92717481-92717500 | MS.gene80206:CDS | 55.0% | |
| CCCCTTGCCATAGGGGTAAA+GGG | + | chr3.4:92717805-92717824 | MS.gene80206:intron | 55.0% | |
| CCCCTTTACCCCTATGGCAA+GGG | - | chr3.4:92717809-92717828 | None:intergenic | 55.0% | |
| CCCTTGCCATAGGGGTAAAG+GGG | + | chr3.4:92717806-92717825 | MS.gene80206:intron | 55.0% | |
| CCCTTTACCCCTATGGCAAG+GGG | - | chr3.4:92717808-92717827 | None:intergenic | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr3.4:92718736-92718755 | MS.gene80206:CDS | 55.0% | |
| GCCGCCTATCATCTTGGACT+CGG | - | chr3.4:92718666-92718685 | None:intergenic | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr3.4:92718789-92718808 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr3.4:92717474-92717493 | MS.gene80206:CDS | 55.0% | |
| TGATAGTCCGAGGCCTGATG+TGG | - | chr3.4:92718457-92718476 | None:intergenic | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr3.4:92716939-92716958 | MS.gene80206:CDS | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr3.4:92718790-92718809 | None:intergenic | 55.0% |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr3.4:92717794-92717813 | None:intergenic | 55.0% |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr3.4:92718743-92718762 | None:intergenic | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr3.4:92718463-92718482 | MS.gene80206:intron | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr3.4:92718467-92718486 | None:intergenic | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr3.4:92718744-92718763 | MS.gene80206:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92716736 | 92718820 | 92716736 | ID=MS.gene80206 |
| chr3.4 | mRNA | 92716736 | 92718820 | 92716736 | ID=MS.gene80206.t1;Parent=MS.gene80206 |
| chr3.4 | exon | 92716736 | 92717819 | 92716736 | ID=MS.gene80206.t1.exon1;Parent=MS.gene80206.t1 |
| chr3.4 | CDS | 92716736 | 92717819 | 92716736 | ID=cds.MS.gene80206.t1;Parent=MS.gene80206.t1 |
| chr3.4 | exon | 92718654 | 92718820 | 92718654 | ID=MS.gene80206.t1.exon2;Parent=MS.gene80206.t1 |
| chr3.4 | CDS | 92718654 | 92718820 | 92718654 | ID=cds.MS.gene80206.t1;Parent=MS.gene80206.t1 |
| Gene Sequence |
| Protein sequence |
