AlfalfaGEDB | MS.gene80242

M. sativa cultivar XinJiangDaYe / MS.gene80242

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80242.t1	XP_024634855.1	62.2	790	39	4	1	530	1	790	6.50E-244	853.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80242.t1	Q9LIE5	30.5	262	175	3	122	377	398	658	8.5e-27	123.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80242.t1	A0A151RX65	43.1	698	137	4	1	438	1	698	4.2e-136	494.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene80242.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80242.t1	MTR_4g102720	37.584	149	33	3	1	122	1	116	2.06e-21	93.2
MS.gene80242.t1	MTR_0402s0040	30.137	219	103	7	45	250	92	273	3.64e-18	87.8
MS.gene80242.t1	MTR_0337s0060	30.282	142	94	3	168	307	14	152	8.17e-14	71.6
MS.gene80242.t1	MTR_7g061980	38.053	113	42	3	4	88	7	119	1.06e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80242.t1	AT3G22170	30.292	274	183	4	110	377	387	658	4.71e-30	125
MS.gene80242.t1	AT3G22170	30.292	274	183	4	110	377	387	658	4.71e-30	125
MS.gene80242.t1	AT4G38180	33.182	220	139	3	122	337	413	628	5.11e-27	116
MS.gene80242.t1	AT4G38170	26.014	296	194	5	124	398	180	471	9.13e-27	114
MS.gene80242.t1	AT4G15090	26.286	350	226	5	110	435	377	718	1.08e-26	115
MS.gene80242.t1	AT4G15090	26.286	350	226	5	110	435	377	718	1.08e-26	115
MS.gene80242.t1	AT4G15090	26.286	350	226	5	110	435	377	718	1.08e-26	115
MS.gene80242.t1	AT4G15090	26.286	350	226	5	110	435	377	718	1.08e-26	115
MS.gene80242.t1	AT4G15090	26.286	350	226	5	110	435	377	718	1.08e-26	115
MS.gene80242.t1	AT5G18960	31.081	222	138	6	122	337	510	722	1.06e-22	102

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Find 82 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCATACTTTATAAGGA+GGG	0.603443	3.4:+93078167	None:intergenic
AAGAACAAAGAAGGTCCAAA+GGG	0.561141	3.4:-93077271	MS.gene80242:CDS
AAGAACAATTTGAAGATGGT+TGG	0.449713	3.4:-93078194	MS.gene80242:CDS
AAGATGTTGTAGAAGAAAAG+CGG	0.551004	3.4:-93077966	MS.gene80242:CDS
AAGGGGTTTAAGAACAAAGA+AGG	0.557368	3.4:-93077280	MS.gene80242:CDS
AAGGGTTCAAAACGTTGGAA+AGG	0.583511	3.4:-93077253	MS.gene80242:CDS
AAGGTTAGGACTTAAGAATG+TGG	0.679784	3.4:-93079003	MS.gene80242:CDS
AATAGTAGGAGTATAAAGCT+TGG	0.523378	3.4:+93077858	None:intergenic
ACAAATTGTGAAGCAAGGTT+AGG	0.474466	3.4:-93079017	MS.gene80242:CDS
ACATCCCTCCTTATAAAGTA+TGG	0.358569	3.4:-93078171	MS.gene80242:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACCATACTTTATAAGGA+GGG	+	chr3.4:93077731-93077750	None:intergenic	30.0%
AAGAACAATTTGAAGATGGT+TGG	-	chr3.4:93077701-93077720	MS.gene80242:CDS	30.0%
AAGATGTTGTAGAAGAAAAG+CGG	-	chr3.4:93077929-93077948	MS.gene80242:CDS	30.0%
AGGTTTCCAAAAATGTAATG+AGG	-	chr3.4:93078837-93078856	MS.gene80242:CDS	30.0%
AGTAGAGCTTAACAAACTAT+TGG	-	chr3.4:93078339-93078358	MS.gene80242:intron	30.0%
ATGAAGAAGACTTTGACATT+AGG	-	chr3.4:93077811-93077830	MS.gene80242:CDS	30.0%
ATGGTGTTCAGAAAAATGAT+TGG	-	chr3.4:93077743-93077762	MS.gene80242:CDS	30.0%
ATTGCCAAGAAAAGGAATAT+GGG	-	chr3.4:93078147-93078166	MS.gene80242:CDS	30.0%
ATTTCCTTATAACATTGTGC+TGG	+	chr3.4:93078399-93078418	None:intergenic	30.0%
CTTAGGAAATTTAATGAAGG+GGG	-	chr3.4:93077627-93077646	MS.gene80242:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	93076658	93079259	93076658	ID=MS.gene80242
chr3.4	mRNA	93076658	93079259	93076658	ID=MS.gene80242.t1;Parent=MS.gene80242
chr3.4	exon	93079178	93079259	93079178	ID=MS.gene80242.t1.exon1;Parent=MS.gene80242.t1
chr3.4	CDS	93079178	93079259	93079178	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93078824	93079107	93078824	ID=MS.gene80242.t1.exon2;Parent=MS.gene80242.t1
chr3.4	CDS	93078824	93079107	93078824	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93077598	93078241	93077598	ID=MS.gene80242.t1.exon3;Parent=MS.gene80242.t1
chr3.4	CDS	93077598	93078241	93077598	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93077180	93077480	93077180	ID=MS.gene80242.t1.exon4;Parent=MS.gene80242.t1
chr3.4	CDS	93077180	93077480	93077180	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93076908	93077096	93076908	ID=MS.gene80242.t1.exon5;Parent=MS.gene80242.t1
chr3.4	CDS	93076908	93077096	93076908	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93076775	93076831	93076775	ID=MS.gene80242.t1.exon6;Parent=MS.gene80242.t1
chr3.4	CDS	93076775	93076831	93076775	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1
chr3.4	exon	93076658	93076702	93076658	ID=MS.gene80242.t1.exon7;Parent=MS.gene80242.t1
chr3.4	CDS	93076658	93076702	93076658	ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1

Gene Sequence

>MS.gene80242

ATGAATGAAGATTGGAAGCCAAAAGTTGATATGGTTTTCAGTAGCTTTGAAGATGCTTGGGAGTTCTGGAAAACTTACGGTGGTAAGGTTGGATTCGGGGTGAGGAAAGATTATACACACAGAAAAATGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAGACAAGCACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAAGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGATTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGGGTTTTATTTGTCATGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATACTTTCAAAGAAAGTCAGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTAGCAATCATCTCAGGATTTAACCACCATCGAGGAGCTGTAATTTTTGGAGCTGTATTATTATATGATGAAACTGCTGAGTCATACGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCGTAAGCTGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCCTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAATATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACTTAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTAAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCCAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTAACAAACTATTGGTGTTAGTCATGTTGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTATTAGGATCGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTCGAGTTTCGTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGTTGAAGTTTCAAAATATGCAAATAAGTAGTGAACAAGTGAATGAAACCTCTAACAATATTAAAGAGATATCAAGTACTAATGATGGTGCAACACAAGTAAAGGGGTTTAAGAACAAAGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGTTGGGTAGAAACGAAACTGGCCAAGAGAAAGAAACGCGCAAAGTCCACTGCTTCACAAATTCAAGAACCTATGGTATTATTAATATATTTAGTTTTATTTTTTGTTTTTGTTGACTACATAAGCTCACCTTTATATTCCTTTTTTTTTTCGTGTAGAAGAACAAAGCTAAGCAGGTTTCCAAAAATGTAATGAGGCGGGATGAAGTGTCAAACACAAGTGCTTCACAAAGTCAAAAGCAATATGTTGTGTCCAACATTAGTGATTTACAATGTCAACAGCCATATGCATCGCCAATTACAAGTGCACCTATATGGCTTAATAATGCATACAATCAACCATCCATGGTTAGCTAATAACAATTTGAATTTGTGAATGACCTTAACTATGTTTAGTGTTTAAATTATTTTGGTTTTTATGTAGGGAGACGATGGAACATCTAGTCAATTTGGTGTCGCTAGTTTTACTAGCTTATTGATGGTAAATTTCAAATTATACGATTCACTTTCAAATCTATATATATAATATTAACTTGCATTTTTTAAATTATAGGAGCAACTTGATGATGGTACCAGAGACTTGAATGGAGGCCTGTAG

Protein sequence

>MS.gene80242.t1

MNEDWKPKVDMVFSSFEDAWEFWKTYGGLFAAKKAYESQTSTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKISEIQCQQIELADSAGVQQRKSFDLLSKEKCMYGYEDEEQFEDGWTSLLIKYGVQKNDWLQRMYNIKEKWASCYMKKTLTLGMRSTQLSESVNADIKNFMSKDLDLIKFFKRFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRIVTEGCRSPEAVEFRKEVADELDEQMLKFQNMQISSEQVNETSNNIKEISSTNDGATQVKGFKNKEGPKGSKRWKGWVETKLAKRKKRAKSTASQIQEPMKNKAKQVSKNVMRRDEVSNTSASQSQKQYVVSNISDLQCQQPYASPITSAPIWLNNAYNQPSMGDDGTSSQFGVASFTSLLMEQLDDGTRDLNGGL