Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80242.t1 | XP_024634855.1 | 62.2 | 790 | 39 | 4 | 1 | 530 | 1 | 790 | 6.50E-244 | 853.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80242.t1 | Q9LIE5 | 30.5 | 262 | 175 | 3 | 122 | 377 | 398 | 658 | 8.5e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80242.t1 | A0A151RX65 | 43.1 | 698 | 137 | 4 | 1 | 438 | 1 | 698 | 4.2e-136 | 494.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80242.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80242.t1 | MTR_4g102720 | 37.584 | 149 | 33 | 3 | 1 | 122 | 1 | 116 | 2.06e-21 | 93.2 |
| MS.gene80242.t1 | MTR_0402s0040 | 30.137 | 219 | 103 | 7 | 45 | 250 | 92 | 273 | 3.64e-18 | 87.8 |
| MS.gene80242.t1 | MTR_0337s0060 | 30.282 | 142 | 94 | 3 | 168 | 307 | 14 | 152 | 8.17e-14 | 71.6 |
| MS.gene80242.t1 | MTR_7g061980 | 38.053 | 113 | 42 | 3 | 4 | 88 | 7 | 119 | 1.06e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80242.t1 | AT3G22170 | 30.292 | 274 | 183 | 4 | 110 | 377 | 387 | 658 | 4.71e-30 | 125 |
| MS.gene80242.t1 | AT3G22170 | 30.292 | 274 | 183 | 4 | 110 | 377 | 387 | 658 | 4.71e-30 | 125 |
| MS.gene80242.t1 | AT4G38180 | 33.182 | 220 | 139 | 3 | 122 | 337 | 413 | 628 | 5.11e-27 | 116 |
| MS.gene80242.t1 | AT4G38170 | 26.014 | 296 | 194 | 5 | 124 | 398 | 180 | 471 | 9.13e-27 | 114 |
| MS.gene80242.t1 | AT4G15090 | 26.286 | 350 | 226 | 5 | 110 | 435 | 377 | 718 | 1.08e-26 | 115 |
| MS.gene80242.t1 | AT4G15090 | 26.286 | 350 | 226 | 5 | 110 | 435 | 377 | 718 | 1.08e-26 | 115 |
| MS.gene80242.t1 | AT4G15090 | 26.286 | 350 | 226 | 5 | 110 | 435 | 377 | 718 | 1.08e-26 | 115 |
| MS.gene80242.t1 | AT4G15090 | 26.286 | 350 | 226 | 5 | 110 | 435 | 377 | 718 | 1.08e-26 | 115 |
| MS.gene80242.t1 | AT4G15090 | 26.286 | 350 | 226 | 5 | 110 | 435 | 377 | 718 | 1.08e-26 | 115 |
| MS.gene80242.t1 | AT5G18960 | 31.081 | 222 | 138 | 6 | 122 | 337 | 510 | 722 | 1.06e-22 | 102 |
| MS.gene80242.t1 | AT5G18960 | 31.081 | 222 | 138 | 6 | 122 | 337 | 510 | 722 | 1.06e-22 | 102 |
| MS.gene80242.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 3.99e-22 | 100 |
| MS.gene80242.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 3.99e-22 | 100 |
| MS.gene80242.t1 | AT3G06250 | 31.982 | 222 | 136 | 6 | 122 | 337 | 486 | 698 | 3.99e-22 | 100 |
| MS.gene80242.t1 | AT1G80010 | 26.316 | 266 | 177 | 7 | 81 | 337 | 400 | 655 | 6.42e-22 | 100 |
| MS.gene80242.t1 | AT1G76320 | 29.302 | 215 | 149 | 2 | 123 | 337 | 327 | 538 | 2.23e-21 | 98.6 |
| MS.gene80242.t1 | AT1G76320 | 29.302 | 215 | 149 | 2 | 123 | 337 | 327 | 538 | 2.23e-21 | 98.6 |
| MS.gene80242.t1 | AT1G76320 | 29.302 | 215 | 149 | 2 | 123 | 337 | 327 | 538 | 2.37e-21 | 98.6 |
| MS.gene80242.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 217 | 428 | 3.41e-21 | 98.2 |
| MS.gene80242.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 362 | 573 | 4.08e-21 | 97.8 |
| MS.gene80242.t1 | AT2G27110 | 28.372 | 215 | 150 | 3 | 124 | 337 | 362 | 573 | 4.08e-21 | 97.8 |
| MS.gene80242.t1 | AT1G76320 | 29.302 | 215 | 149 | 2 | 123 | 337 | 327 | 538 | 5.25e-21 | 97.4 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 339 | 565 | 1.36e-20 | 96.3 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 339 | 565 | 1.36e-20 | 96.3 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 339 | 565 | 1.55e-20 | 95.9 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 339 | 565 | 1.55e-20 | 95.9 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 282 | 508 | 1.59e-20 | 95.9 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 339 | 565 | 1.90e-20 | 95.9 |
| MS.gene80242.t1 | AT4G19990 | 30.568 | 229 | 155 | 3 | 124 | 350 | 353 | 579 | 2.48e-20 | 95.5 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 294 | 534 | 3.06e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 294 | 534 | 3.47e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 3.51e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 3.51e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 3.58e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 3.58e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 3.58e-20 | 95.1 |
| MS.gene80242.t1 | AT2G32250 | 25.203 | 246 | 179 | 2 | 124 | 369 | 335 | 575 | 5.27e-20 | 94.4 |
| MS.gene80242.t1 | AT1G52520 | 27.103 | 214 | 146 | 3 | 133 | 337 | 420 | 632 | 2.19e-18 | 89.4 |
| MS.gene80242.t1 | AT1G10240 | 25.296 | 253 | 165 | 8 | 125 | 369 | 394 | 630 | 7.29e-14 | 74.7 |
| MS.gene80242.t1 | AT1G10240 | 25.296 | 253 | 165 | 8 | 125 | 369 | 394 | 630 | 7.29e-14 | 74.7 |
| MS.gene80242.t1 | AT5G28530 | 23.664 | 262 | 178 | 7 | 81 | 337 | 371 | 615 | 2.47e-13 | 73.2 |
| MS.gene80242.t1 | AT5G28530 | 23.664 | 262 | 178 | 7 | 81 | 337 | 308 | 552 | 2.57e-13 | 73.2 |
| MS.gene80242.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 308 | 548 | 7.55e-13 | 71.6 |
| MS.gene80242.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 371 | 611 | 7.56e-13 | 71.6 |
| MS.gene80242.t1 | AT5G28530 | 24.031 | 258 | 178 | 7 | 81 | 337 | 371 | 611 | 7.56e-13 | 71.6 |
Find 82 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 3.4:+93077592 | None:intergenic |
| TCTGAACACCATACTTTATA+AGG | 0.212221 | 3.4:+93078163 | None:intergenic |
| TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 3.4:-93079191 | MS.gene80242:CDS |
| TTACGAAACTCGACAGCTTC+TGG | 0.243237 | 3.4:+93077433 | None:intergenic |
| GACAACATATGAGTTGTTTC+TGG | 0.253501 | 3.4:+93078924 | None:intergenic |
| CTGAAAACCATATCAACTTT+TGG | 0.256089 | 3.4:+93079219 | None:intergenic |
| TATCTCTTTAATATTGTTAG+AGG | 0.283905 | 3.4:+93077333 | None:intergenic |
| TATTGCCAAGAAAAGGAATA+TGG | 0.289005 | 3.4:-93077749 | MS.gene80242:CDS |
| CCTTGCTTCACAATTTGTTC+TGG | 0.300300 | 3.4:+93079022 | None:intergenic |
| CATATAGGTGCACTTGTAAT+TGG | 0.302297 | 3.4:+93076939 | None:intergenic |
| CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 3.4:-93077635 | MS.gene80242:CDS |
| TTGGAAGCCAAAAGTTGATA+TGG | 0.315145 | 3.4:-93079226 | MS.gene80242:CDS |
| TTGGATTCTTTGTGCTTGTC+TGG | 0.326800 | 3.4:+93079054 | None:intergenic |
| CTTTGCGCGTTTCTTTCTCT+TGG | 0.329292 | 3.4:+93077210 | None:intergenic |
| ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 3.4:-93078084 | MS.gene80242:CDS |
| CAATTACAAGTGCACCTATA+TGG | 0.342061 | 3.4:-93076938 | MS.gene80242:CDS |
| TGTACAATATAAAGGAGAAA+TGG | 0.347671 | 3.4:-93078119 | MS.gene80242:CDS |
| TGTCGTAAATTTGAGAGCTT+TGG | 0.348811 | 3.4:-93077676 | MS.gene80242:CDS |
| ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 3.4:-93078171 | MS.gene80242:CDS |
| GATGGAACATCTAGTCAATT+TGG | 0.363982 | 3.4:-93076803 | MS.gene80242:CDS |
| TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 3.4:-93078083 | MS.gene80242:CDS |
| ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 3.4:-93077722 | MS.gene80242:CDS |
| TTTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 3.4:+93079035 | None:intergenic |
| GCAAAGAATGTACAATATAA+AGG | 0.392434 | 3.4:-93078127 | MS.gene80242:CDS |
| CAGTAGCTTTGAAGATGCTT+GGG | 0.400724 | 3.4:-93079199 | MS.gene80242:CDS |
| GATACAAGATGAATGAAGAT+TGG | 0.401677 | 3.4:-93079245 | None:intergenic |
| TAAGGAAGTTGCTGATGAAT+TGG | 0.406007 | 3.4:-93077413 | MS.gene80242:CDS |
| TATGCATTATTAAGCCATAT+AGG | 0.412953 | 3.4:+93076924 | None:intergenic |
| TCAGTAGCTTTGAAGATGCT+TGG | 0.418263 | 3.4:-93079200 | MS.gene80242:CDS |
| GACTTTAAGAAATGCATGTA+TGG | 0.419899 | 3.4:-93078228 | MS.gene80242:intron |
| GTACAATATAAAGGAGAAAT+GGG | 0.433816 | 3.4:-93078118 | MS.gene80242:CDS |
| GATGGTGCAACACAAGTAAA+GGG | 0.435850 | 3.4:-93077298 | MS.gene80242:CDS |
| AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 3.4:-93078194 | MS.gene80242:CDS |
| GTTCAAAACGTTGGAAAGGT+TGG | 0.454209 | 3.4:-93077249 | MS.gene80242:CDS |
| CTTATGTTATTGCCAAGAAA+AGG | 0.457771 | 3.4:-93077756 | MS.gene80242:CDS |
| AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 3.4:-93079087 | MS.gene80242:CDS |
| TGATGGTGCAACACAAGTAA+AGG | 0.471729 | 3.4:-93077299 | MS.gene80242:CDS |
| ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 3.4:-93079017 | MS.gene80242:CDS |
| GAATACGAGTTCTTCAGTCT+TGG | 0.477905 | 3.4:+93077901 | None:intergenic |
| TTCACAAATTCAAGAACCTA+TGG | 0.484743 | 3.4:-93077179 | MS.gene80242:intron |
| ACATTGTAAATCACTAATGT+TGG | 0.488437 | 3.4:+93076980 | None:intergenic |
| TTCAAAACGTTGGAAAGGTT+GGG | 0.489068 | 3.4:-93077248 | MS.gene80242:CDS |
| TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 3.4:-93079180 | MS.gene80242:CDS |
| CTTGTAATTGGCGATGCATA+TGG | 0.492051 | 3.4:+93076951 | None:intergenic |
| GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 3.4:-93078988 | MS.gene80242:CDS |
| CAGGCCTCCATTCAAGTCTC+TGG | 0.496457 | 3.4:+93076661 | None:intergenic |
| CTCTTTAAAATATAAGGCTC+AGG | 0.500537 | 3.4:+93077598 | None:intergenic |
| GAGATATCAAGTACTAATGA+TGG | 0.502322 | 3.4:-93077316 | MS.gene80242:CDS |
| GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 3.4:-93078198 | MS.gene80242:CDS |
| TTCTTGAATTTGTGAAGCAG+TGG | 0.516062 | 3.4:+93077186 | None:intergenic |
| ATTGCCAAGAAAAGGAATAT+GGG | 0.518068 | 3.4:-93077748 | MS.gene80242:CDS |
| AGAAAAGGAATATGGGAGAA+TGG | 0.522592 | 3.4:-93077741 | MS.gene80242:CDS |
| AATAGTAGGAGTATAAAGCT+TGG | 0.523378 | 3.4:+93077858 | None:intergenic |
| TGTTATTAGCTAACCATGGA+TGG | 0.526558 | 3.4:+93076894 | None:intergenic |
| AGGTTGGGTAGAAACGAAAC+TGG | 0.532288 | 3.4:-93077233 | MS.gene80242:CDS |
| CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 3.4:+93078845 | None:intergenic |
| GTAGAAGAACAAAGCTAAGC+AGG | 0.541747 | 3.4:-93077078 | MS.gene80242:intron |
| TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 3.4:-93078999 | MS.gene80242:CDS |
| AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 3.4:-93077966 | MS.gene80242:CDS |
| AAGGGGTTTAAGAACAAAGA+AGG | 0.557368 | 3.4:-93077280 | MS.gene80242:CDS |
| GATGGTACCAGAGACTTGAA+TGG | 0.557463 | 3.4:-93076668 | MS.gene80242:CDS |
| AAGAACAAAGAAGGTCCAAA+GGG | 0.561141 | 3.4:-93077271 | MS.gene80242:CDS |
| TGCATACAATCAACCATCCA+TGG | 0.568746 | 3.4:-93076907 | MS.gene80242:intron |
| GCAAATGTAACTCGTGGTTG+TGG | 0.569974 | 3.4:+93078946 | None:intergenic |
| TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 3.4:-93076686 | MS.gene80242:intron |
| GAACACCATACTTTATAAGG+AGG | 0.576736 | 3.4:+93078166 | None:intergenic |
| TAAGAACAAAGAAGGTCCAA+AGG | 0.577271 | 3.4:-93077272 | MS.gene80242:CDS |
| AAGGGTTCAAAACGTTGGAA+AGG | 0.583511 | 3.4:-93077253 | MS.gene80242:CDS |
| GTCCAAAGGGTTCAAAACGT+TGG | 0.588871 | 3.4:-93077258 | MS.gene80242:CDS |
| TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 3.4:-93077466 | MS.gene80242:intron |
| AACACCATACTTTATAAGGA+GGG | 0.603443 | 3.4:+93078167 | None:intergenic |
| AGAAGCTGTCGAGTTTCGTA+AGG | 0.604501 | 3.4:-93077431 | MS.gene80242:CDS |
| CCAGAACAAATTGTGAAGCA+AGG | 0.610911 | 3.4:-93079022 | MS.gene80242:CDS |
| ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 3.4:-93078864 | MS.gene80242:CDS |
| ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 3.4:-93078851 | MS.gene80242:CDS |
| TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 3.4:+93078940 | None:intergenic |
| CAAACAACTCATACTCACGT+TGG | 0.665525 | 3.4:+93077824 | None:intergenic |
| AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 3.4:-93077800 | MS.gene80242:CDS |
| ATGGTGCAACACAAGTAAAG+GGG | 0.679306 | 3.4:-93077297 | MS.gene80242:CDS |
| AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 3.4:-93079003 | MS.gene80242:CDS |
| GGTACCAGAGACTTGAATGG+AGG | 0.689295 | 3.4:-93076665 | MS.gene80242:CDS |
| GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 3.4:-93079177 | MS.gene80242:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTAATAATACCAT+AGG | + | chr3.4:93078735-93078754 | None:intergenic | 10.0% |
| !!! | TATTAAAAATTTTATGAGTA+AGG | - | chr3.4:93077873-93077892 | MS.gene80242:CDS | 10.0% |
| !! | GAAAAAAAAAAGGAATATAA+AGG | + | chr3.4:93078795-93078814 | None:intergenic | 15.0% |
| !!! | AATTATTTTGGTTTTTATGT+AGG | - | chr3.4:93079064-93079083 | MS.gene80242:CDS | 15.0% |
| !!! | ACTTGCATTTTTTAAATTAT+AGG | - | chr3.4:93079193-93079212 | MS.gene80242:CDS | 15.0% |
| !!! | ATTATTTTGGTTTTTATGTA+GGG | - | chr3.4:93079065-93079084 | MS.gene80242:CDS | 15.0% |
| !!! | GTTTAGTGTTTAAATTATTT+TGG | - | chr3.4:93079052-93079071 | MS.gene80242:CDS | 15.0% |
| !! | AAAAAAAAGAGAAAGAAGTT+TGG | - | chr3.4:93077150-93077169 | MS.gene80242:intron | 20.0% |
| !! | TATCTCTTTAATATTGTTAG+AGG | + | chr3.4:93078565-93078584 | None:intergenic | 20.0% |
| !! | TTAAACACTAAACATAGTTA+AGG | + | chr3.4:93079045-93079064 | None:intergenic | 20.0% |
| !!! | TTGATTGATTACAGTTATTT+TGG | - | chr3.4:93077304-93077323 | MS.gene80242:CDS | 20.0% |
| ! | ACACTTAGGAAATTTAATGA+AGG | - | chr3.4:93077624-93077643 | MS.gene80242:CDS | 25.0% |
| ! | ACATTGTAAATCACTAATGT+TGG | + | chr3.4:93078918-93078937 | None:intergenic | 25.0% |
| ! | ACTTAGGAAATTTAATGAAG+GGG | - | chr3.4:93077626-93077645 | MS.gene80242:CDS | 25.0% |
| ! | AGATTATACACACAGAAAAA+TGG | - | chr3.4:93076765-93076784 | MS.gene80242:intron | 25.0% |
| ! | CAAAATGGAATTAAACACTT+AGG | - | chr3.4:93077610-93077629 | MS.gene80242:CDS | 25.0% |
| ! | CACTTAGGAAATTTAATGAA+GGG | - | chr3.4:93077625-93077644 | MS.gene80242:CDS | 25.0% |
| ! | CTTAAAAGTCTTCATTCATA+TGG | - | chr3.4:93078260-93078279 | MS.gene80242:intron | 25.0% |
| ! | GCAAAGAATGTACAATATAA+AGG | - | chr3.4:93077768-93077787 | MS.gene80242:CDS | 25.0% |
| ! | GTACAATATAAAGGAGAAAT+GGG | - | chr3.4:93077777-93077796 | MS.gene80242:CDS | 25.0% |
| ! | TATGCATTATTAAGCCATAT+AGG | + | chr3.4:93078974-93078993 | None:intergenic | 25.0% |
| ! | TCTTCTACACGAAAAAAAAA+AGG | + | chr3.4:93078805-93078824 | None:intergenic | 25.0% |
| ! | TGGAATAAGTCAAAAATAGT+AGG | + | chr3.4:93078054-93078073 | None:intergenic | 25.0% |
| ! | TGTACAATATAAAGGAGAAA+TGG | - | chr3.4:93077776-93077795 | MS.gene80242:CDS | 25.0% |
| !! | AAATTGTTATTAGCTAACCA+TGG | + | chr3.4:93079008-93079027 | None:intergenic | 25.0% |
| !! | AAATTTTATGAGTAAGGACT+TGG | - | chr3.4:93077879-93077898 | MS.gene80242:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | - | chr3.4:93079121-93079140 | MS.gene80242:intron | 25.0% |
| AACACCATACTTTATAAGGA+GGG | + | chr3.4:93077731-93077750 | None:intergenic | 30.0% | |
| AAGAACAATTTGAAGATGGT+TGG | - | chr3.4:93077701-93077720 | MS.gene80242:CDS | 30.0% | |
| AAGATGTTGTAGAAGAAAAG+CGG | - | chr3.4:93077929-93077948 | MS.gene80242:CDS | 30.0% | |
| AGGTTTCCAAAAATGTAATG+AGG | - | chr3.4:93078837-93078856 | MS.gene80242:CDS | 30.0% | |
| AGTAGAGCTTAACAAACTAT+TGG | - | chr3.4:93078339-93078358 | MS.gene80242:intron | 30.0% | |
| ATGAAGAAGACTTTGACATT+AGG | - | chr3.4:93077811-93077830 | MS.gene80242:CDS | 30.0% | |
| ATGGTGTTCAGAAAAATGAT+TGG | - | chr3.4:93077743-93077762 | MS.gene80242:CDS | 30.0% | |
| ATTGCCAAGAAAAGGAATAT+GGG | - | chr3.4:93078147-93078166 | MS.gene80242:CDS | 30.0% | |
| ATTTCCTTATAACATTGTGC+TGG | + | chr3.4:93078399-93078418 | None:intergenic | 30.0% | |
| CTTAGGAAATTTAATGAAGG+GGG | - | chr3.4:93077627-93077646 | MS.gene80242:CDS | 30.0% | |
| CTTATGTTATTGCCAAGAAA+AGG | - | chr3.4:93078139-93078158 | MS.gene80242:CDS | 30.0% | |
| GAGATATCAAGTACTAATGA+TGG | - | chr3.4:93078579-93078598 | MS.gene80242:intron | 30.0% | |
| GATGAAGAACAATTTGAAGA+TGG | - | chr3.4:93077697-93077716 | MS.gene80242:CDS | 30.0% | |
| GATTTACTGAGTAAAGAAGT+AGG | - | chr3.4:93077076-93077095 | MS.gene80242:CDS | 30.0% | |
| TACTGATCAAGACAAATCAA+TGG | - | chr3.4:93077525-93077544 | MS.gene80242:intron | 30.0% | |
| TATACACACAGAAAAATGGA+TGG | - | chr3.4:93076769-93076788 | MS.gene80242:intron | 30.0% | |
| TATTGCCAAGAAAAGGAATA+TGG | - | chr3.4:93078146-93078165 | MS.gene80242:CDS | 30.0% | |
| TCTGAACACCATACTTTATA+AGG | + | chr3.4:93077735-93077754 | None:intergenic | 30.0% | |
| TGAAGAAGACTTTGACATTA+GGG | - | chr3.4:93077812-93077831 | MS.gene80242:CDS | 30.0% | |
| TGATCAGTAAAAACTGTTTG+AGG | + | chr3.4:93077514-93077533 | None:intergenic | 30.0% | |
| TTCACAAATTCAAGAACCTA+TGG | - | chr3.4:93078716-93078735 | MS.gene80242:intron | 30.0% | |
| TTTCCAAAAATGTAATGAGG+CGG | - | chr3.4:93078840-93078859 | MS.gene80242:CDS | 30.0% | |
| ! | AATAGTAGGAGTATAAAGCT+TGG | + | chr3.4:93078040-93078059 | None:intergenic | 30.0% |
| ! | CTGAAAACCATATCAACTTT+TGG | + | chr3.4:93076679-93076698 | None:intergenic | 30.0% |
| ! | GACTTTAAGAAATGCATGTA+TGG | - | chr3.4:93077667-93077686 | MS.gene80242:CDS | 30.0% |
| ! | TGTATTCTTTTCCAAATCGA+AGG | + | chr3.4:93078187-93078206 | None:intergenic | 30.0% |
| !! | AGCCTTATATTTTAAAGAGG+TGG | - | chr3.4:93078301-93078320 | MS.gene80242:intron | 30.0% |
| !! | CTCTTTAAAATATAAGGCTC+AGG | + | chr3.4:93078300-93078319 | None:intergenic | 30.0% |
| !! | CTGAGCCTTATATTTTAAAG+AGG | - | chr3.4:93078298-93078317 | MS.gene80242:intron | 30.0% |
| !! | GTCCACCTCTTTAAAATATA+AGG | + | chr3.4:93078306-93078325 | None:intergenic | 30.0% |
| !!! | TCTTCAGTCTTGGAATTTTT+TGG | + | chr3.4:93077987-93078006 | None:intergenic | 30.0% |
| AAGAACAAAGAAGGTCCAAA+GGG | - | chr3.4:93078624-93078643 | MS.gene80242:intron | 35.0% | |
| AAGGGGTTTAAGAACAAAGA+AGG | - | chr3.4:93078615-93078634 | MS.gene80242:intron | 35.0% | |
| AAGGTTAGGACTTAAGAATG+TGG | - | chr3.4:93076892-93076911 | MS.gene80242:intron | 35.0% | |
| ACAAATTGTGAAGCAAGGTT+AGG | - | chr3.4:93076878-93076897 | MS.gene80242:intron | 35.0% | |
| ACATCCCTCCTTATAAAGTA+TGG | - | chr3.4:93077724-93077743 | MS.gene80242:CDS | 35.0% | |
| AGAAAAGGAATATGGGAGAA+TGG | - | chr3.4:93078154-93078173 | MS.gene80242:CDS | 35.0% | |
| AGAAAGAAGTTTGGTACAAG+GGG | - | chr3.4:93077159-93077178 | MS.gene80242:intron | 35.0% | |
| AGAGAAAGAAGTTTGGTACA+AGG | - | chr3.4:93077157-93077176 | MS.gene80242:intron | 35.0% | |
| ATCTCCAGCACAATGTTATA+AGG | - | chr3.4:93078392-93078411 | MS.gene80242:intron | 35.0% | |
| ATGGTTCAGTTTCTTCTTGT+AGG | - | chr3.4:93076788-93076807 | MS.gene80242:CDS | 35.0% | |
| CAATATCTAGCTGATAAGCA+TGG | + | chr3.4:93077243-93077262 | None:intergenic | 35.0% | |
| CAATTACAAGTGCACCTATA+TGG | - | chr3.4:93078957-93078976 | MS.gene80242:CDS | 35.0% | |
| CATATAGGTGCACTTGTAAT+TGG | + | chr3.4:93078959-93078978 | None:intergenic | 35.0% | |
| GAACACCATACTTTATAAGG+AGG | + | chr3.4:93077732-93077751 | None:intergenic | 35.0% | |
| GAATGTGGATGGAAAATTGA+TGG | - | chr3.4:93076907-93076926 | MS.gene80242:intron | 35.0% | |
| GAGAAAGAAGTTTGGTACAA+GGG | - | chr3.4:93077158-93077177 | MS.gene80242:intron | 35.0% | |
| GATGGAACATCTAGTCAATT+TGG | - | chr3.4:93079092-93079111 | MS.gene80242:intron | 35.0% | |
| TAAGAACAAAGAAGGTCCAA+AGG | - | chr3.4:93078623-93078642 | MS.gene80242:intron | 35.0% | |
| TAAGGAAGTTGCTGATGAAT+TGG | - | chr3.4:93078482-93078501 | MS.gene80242:intron | 35.0% | |
| TAGTCATGTTGTAGAAGACT+TGG | - | chr3.4:93078365-93078384 | MS.gene80242:intron | 35.0% | |
| TGATAAGCATGGTAGAAAGT+TGG | + | chr3.4:93077232-93077251 | None:intergenic | 35.0% | |
| TGTCGTAAATTTGAGAGCTT+TGG | - | chr3.4:93078219-93078238 | MS.gene80242:CDS | 35.0% | |
| TGTTATTAGCTAACCATGGA+TGG | + | chr3.4:93079004-93079023 | None:intergenic | 35.0% | |
| TTACTGAGTAAAGAAGTAGG+AGG | - | chr3.4:93077079-93077098 | MS.gene80242:intron | 35.0% | |
| TTAGGACTTAAGAATGTGGA+TGG | - | chr3.4:93076896-93076915 | MS.gene80242:intron | 35.0% | |
| TTATAGGAGCAACTTGATGA+TGG | - | chr3.4:93079209-93079228 | MS.gene80242:CDS | 35.0% | |
| TTCAAAACGTTGGAAAGGTT+GGG | - | chr3.4:93078647-93078666 | MS.gene80242:intron | 35.0% | |
| TTCCAAAAATGTAATGAGGC+GGG | - | chr3.4:93078841-93078860 | MS.gene80242:CDS | 35.0% | |
| TTCTTGAATTTGTGAAGCAG+TGG | + | chr3.4:93078712-93078731 | None:intergenic | 35.0% | |
| TTTATTAGGATCGTCACAGA+AGG | - | chr3.4:93078429-93078448 | MS.gene80242:intron | 35.0% | |
| ! | AAATTTGTCCCCGCTTTATT+AGG | - | chr3.4:93078415-93078434 | MS.gene80242:intron | 35.0% |
| ! | ATCAGATCACCAATGTGTTT+TGG | - | chr3.4:93077266-93077285 | MS.gene80242:CDS | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | + | chr3.4:93076974-93076993 | None:intergenic | 35.0% |
| ! | TCAGATCACCAATGTGTTTT+GGG | - | chr3.4:93077267-93077286 | MS.gene80242:CDS | 35.0% |
| ! | TTCTCCCATATTCCTTTTCT+TGG | + | chr3.4:93078154-93078173 | None:intergenic | 35.0% |
| !! | TTGGAAGCCAAAAGTTGATA+TGG | - | chr3.4:93076669-93076688 | MS.gene80242:CDS | 35.0% |
| !!! | ATTGATGGTGCATGATTTTG+TGG | - | chr3.4:93076922-93076941 | MS.gene80242:CDS | 35.0% |
| AAAACTTACGGTGGTAAGGT+TGG | - | chr3.4:93076727-93076746 | MS.gene80242:intron | 40.0% | |
| AAGGGTTCAAAACGTTGGAA+AGG | - | chr3.4:93078642-93078661 | MS.gene80242:intron | 40.0% | |
| AATCCTGAGATGATTGCTAG+TGG | + | chr3.4:93077379-93077398 | None:intergenic | 40.0% | |
| ACATAAACCATGGTAAGCTC+CGG | + | chr3.4:93077575-93077594 | None:intergenic | 40.0% | |
| AGCATGCTTTGTGAAAAGCA+TGG | - | chr3.4:93078095-93078114 | MS.gene80242:CDS | 40.0% | |
| ATGGTGCAACACAAGTAAAG+GGG | - | chr3.4:93078598-93078617 | MS.gene80242:intron | 40.0% | |
| CAAAAATTACAGCTCCTCGA+TGG | + | chr3.4:93077408-93077427 | None:intergenic | 40.0% | |
| CAAACAACTCATACTCACGT+TGG | + | chr3.4:93078074-93078093 | None:intergenic | 40.0% | |
| CCAGAACAAATTGTGAAGCA+AGG | - | chr3.4:93076873-93076892 | MS.gene80242:intron | 40.0% | |
| CTGTGACGATCCTAATAAAG+CGG | + | chr3.4:93078428-93078447 | None:intergenic | 40.0% | |
| CTTACCATGGTTTATGTACG+TGG | - | chr3.4:93077578-93077597 | MS.gene80242:intron | 40.0% | |
| CTTGTAATTGGCGATGCATA+TGG | + | chr3.4:93078947-93078966 | None:intergenic | 40.0% | |
| GAATACGAGTTCTTCAGTCT+TGG | + | chr3.4:93077997-93078016 | None:intergenic | 40.0% | |
| GATGGTGCAACACAAGTAAA+GGG | - | chr3.4:93078597-93078616 | MS.gene80242:intron | 40.0% | |
| GTAGAAGAACAAAGCTAAGC+AGG | - | chr3.4:93078817-93078836 | MS.gene80242:intron | 40.0% | |
| GTTCAAAACGTTGGAAAGGT+TGG | - | chr3.4:93078646-93078665 | MS.gene80242:intron | 40.0% | |
| TGCATACAATCAACCATCCA+TGG | - | chr3.4:93078988-93079007 | MS.gene80242:CDS | 40.0% | |
| TGTGACGATCCTAATAAAGC+GGG | + | chr3.4:93078427-93078446 | None:intergenic | 40.0% | |
| TTGGATTCTTTGTGCTTGTC+TGG | + | chr3.4:93076844-93076863 | None:intergenic | 40.0% | |
| TTTGTTCTGGTCTCTAGTCT+TGG | + | chr3.4:93076863-93076882 | None:intergenic | 40.0% | |
| ! | AGGTTTGTTTGCTGCAAAGA+AGG | - | chr3.4:93076808-93076827 | MS.gene80242:CDS | 40.0% |
| ! | ATCCCGCCTCATTACATTTT+TGG | + | chr3.4:93078846-93078865 | None:intergenic | 40.0% |
| ! | ATTGAACTAGCTGATAGTGC+CGG | - | chr3.4:93077031-93077050 | MS.gene80242:CDS | 40.0% |
| ! | CATCGAGGAGCTGTAATTTT+TGG | - | chr3.4:93077406-93077425 | MS.gene80242:CDS | 40.0% |
| ! | CCTTGCTTCACAATTTGTTC+TGG | + | chr3.4:93076876-93076895 | None:intergenic | 40.0% |
| ! | CGATTTCCTTTGTTGTACAC+CGG | + | chr3.4:93077053-93077072 | None:intergenic | 40.0% |
| ! | GTTTTTATGTAGGGAGACGA+TGG | - | chr3.4:93079074-93079093 | MS.gene80242:CDS | 40.0% |
| ! | TGATGGTGCAACACAAGTAA+AGG | - | chr3.4:93078596-93078615 | MS.gene80242:intron | 40.0% |
| ! | TTTCTGGCAAATGTAACTCG+TGG | + | chr3.4:93076958-93076977 | None:intergenic | 40.0% |
| !! | CAGTAGCTTTGAAGATGCTT+GGG | - | chr3.4:93076696-93076715 | MS.gene80242:intron | 40.0% |
| !! | TCAGTAGCTTTGAAGATGCT+TGG | - | chr3.4:93076695-93076714 | MS.gene80242:intron | 40.0% |
| !! | TGGGAGTTCTGGAAAACTTA+CGG | - | chr3.4:93076715-93076734 | MS.gene80242:intron | 40.0% |
| !! | TTCCAACGTTTTGAACCCTT+TGG | + | chr3.4:93078642-93078661 | None:intergenic | 40.0% |
| AAACTGCTGAGTCATACGAG+TGG | - | chr3.4:93077449-93077468 | MS.gene80242:CDS | 45.0% | |
| AAATTACAGCTCCTCGATGG+TGG | + | chr3.4:93077405-93077424 | None:intergenic | 45.0% | |
| AAGAAGTTTGGTACAAGGGG+AGG | - | chr3.4:93077162-93077181 | MS.gene80242:intron | 45.0% | |
| ACGTGGCACTTGATGCAAAA+TGG | - | chr3.4:93077595-93077614 | MS.gene80242:intron | 45.0% | |
| AGAAGCTGTCGAGTTTCGTA+AGG | - | chr3.4:93078464-93078483 | MS.gene80242:intron | 45.0% | |
| AGACCACTAGCAATCATCTC+AGG | - | chr3.4:93077373-93077392 | MS.gene80242:CDS | 45.0% | |
| AGCATCTGCCCAAAACACAT+TGG | + | chr3.4:93077278-93077297 | None:intergenic | 45.0% | |
| AGGTTGGGTAGAAACGAAAC+TGG | - | chr3.4:93078662-93078681 | MS.gene80242:intron | 45.0% | |
| AGTAGGAGGCAGAACTAACT+TGG | - | chr3.4:93077093-93077112 | MS.gene80242:intron | 45.0% | |
| AGTGCCACGTACATAAACCA+TGG | + | chr3.4:93077585-93077604 | None:intergenic | 45.0% | |
| ATGGCAAGTGACCTTCGATT+TGG | - | chr3.4:93078173-93078192 | MS.gene80242:CDS | 45.0% | |
| CATAAACCATGGTAAGCTCC+GGG | + | chr3.4:93077574-93077593 | None:intergenic | 45.0% | |
| CTGGAAAACTTACGGTGGTA+AGG | - | chr3.4:93076723-93076742 | MS.gene80242:intron | 45.0% | |
| CTTTGCGCGTTTCTTTCTCT+TGG | + | chr3.4:93078688-93078707 | None:intergenic | 45.0% | |
| GATGGTACCAGAGACTTGAA+TGG | - | chr3.4:93079227-93079246 | MS.gene80242:CDS | 45.0% | |
| GCAAATGTAACTCGTGGTTG+TGG | + | chr3.4:93076952-93076971 | None:intergenic | 45.0% | |
| GTAGGAGGCAGAACTAACTT+GGG | - | chr3.4:93077094-93077113 | MS.gene80242:intron | 45.0% | |
| GTCCAAAGGGTTCAAAACGT+TGG | - | chr3.4:93078637-93078656 | MS.gene80242:intron | 45.0% | |
| GTGACGATCCTAATAAAGCG+GGG | + | chr3.4:93078426-93078445 | None:intergenic | 45.0% | |
| TACGGTGGTAAGGTTGGATT+CGG | - | chr3.4:93076733-93076752 | MS.gene80242:intron | 45.0% | |
| TCAGGATTTAACCACCATCG+AGG | - | chr3.4:93077391-93077410 | MS.gene80242:CDS | 45.0% | |
| TTACGAAACTCGACAGCTTC+TGG | + | chr3.4:93078465-93078484 | None:intergenic | 45.0% | |
| TTGAAGATGCTTGGGAGTTC+TGG | - | chr3.4:93076704-93076723 | MS.gene80242:intron | 45.0% | |
| ! | AATGGCAAAAGCGTAAGCTG+AGG | - | chr3.4:93077543-93077562 | MS.gene80242:intron | 45.0% |
| !! | ATAGTGCCGGTGTACAACAA+AGG | - | chr3.4:93077044-93077063 | MS.gene80242:CDS | 45.0% |
| !! | ATGTGTTTTGGGCAGATGCT+AGG | - | chr3.4:93077278-93077297 | MS.gene80242:CDS | 45.0% |
| !! | GAGTTCTGGAAAACTTACGG+TGG | - | chr3.4:93076718-93076737 | MS.gene80242:intron | 45.0% |
| ACGGTGGTAAGGTTGGATTC+GGG | - | chr3.4:93076734-93076753 | MS.gene80242:intron | 50.0% | |
| GGTACCAGAGACTTGAATGG+AGG | - | chr3.4:93079230-93079249 | MS.gene80242:CDS | 50.0% | |
| AGTTTGGTACAAGGGGAGGC+TGG | - | chr3.4:93077166-93077185 | MS.gene80242:intron | 55.0% | |
| CAGGCCTCCATTCAAGTCTC+TGG | + | chr3.4:93079237-93079256 | None:intergenic | 55.0% | |
| CGGTGGTAAGGTTGGATTCG+GGG | - | chr3.4:93076735-93076754 | MS.gene80242:intron | 55.0% | |
| GCGTAAGCTGAGGTTATGCC+CGG | - | chr3.4:93077553-93077572 | MS.gene80242:intron | 55.0% | |
| GTAAGGTTGGATTCGGGGTG+AGG | - | chr3.4:93076740-93076759 | MS.gene80242:intron | 55.0% | |
| GTTATGCCCGGAGCTTACCA+TGG | - | chr3.4:93077565-93077584 | MS.gene80242:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93076658 | 93079259 | 93076658 | ID=MS.gene80242 |
| chr3.4 | mRNA | 93076658 | 93079259 | 93076658 | ID=MS.gene80242.t1;Parent=MS.gene80242 |
| chr3.4 | exon | 93079178 | 93079259 | 93079178 | ID=MS.gene80242.t1.exon1;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93079178 | 93079259 | 93079178 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93078824 | 93079107 | 93078824 | ID=MS.gene80242.t1.exon2;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93078824 | 93079107 | 93078824 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93077598 | 93078241 | 93077598 | ID=MS.gene80242.t1.exon3;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93077598 | 93078241 | 93077598 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93077180 | 93077480 | 93077180 | ID=MS.gene80242.t1.exon4;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93077180 | 93077480 | 93077180 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93076908 | 93077096 | 93076908 | ID=MS.gene80242.t1.exon5;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93076908 | 93077096 | 93076908 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93076775 | 93076831 | 93076775 | ID=MS.gene80242.t1.exon6;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93076775 | 93076831 | 93076775 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| chr3.4 | exon | 93076658 | 93076702 | 93076658 | ID=MS.gene80242.t1.exon7;Parent=MS.gene80242.t1 |
| chr3.4 | CDS | 93076658 | 93076702 | 93076658 | ID=cds.MS.gene80242.t1;Parent=MS.gene80242.t1 |
| Gene Sequence |
| Protein sequence |
