AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80323

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80323.t1 MTR_1g093095 36.735 147 87 5 101 244 117 260 1.02e-20 90.1
MS.gene80323.t1 MTR_8g017210 32.738 168 98 6 83 250 75 227 1.32e-20 91.7
MS.gene80323.t1 MTR_2g093960 30.102 196 122 6 83 278 45 225 2.24e-20 90.5
MS.gene80323.t1 MTR_4g059870 32.558 172 101 6 83 254 51 207 4.06e-20 90.1
MS.gene80323.t1 MTR_2g099990 31.214 173 104 6 83 255 59 216 3.18e-19 87.4
MS.gene80323.t1 MTR_1g112270 31.373 153 94 5 78 230 52 193 2.64e-18 85.1
MS.gene80323.t1 MTR_1g016010 34.839 155 90 6 77 230 47 191 3.64e-18 84.3
MS.gene80323.t1 MTR_2g090745 33.987 153 90 5 78 230 15 156 3.91e-18 84.3
MS.gene80323.t1 MTR_1g112270 31.081 148 91 5 83 230 68 204 1.07e-17 83.2
MS.gene80323.t1 MTR_2g099990 32.099 162 95 6 94 255 1 147 1.33e-17 82.4
MS.gene80323.t1 MTR_1g094115 32.680 153 92 5 78 230 55 196 1.89e-17 82.4
MS.gene80323.t1 MTR_1g094115 34.351 131 75 5 100 230 60 179 2.40e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80323.t1 AT1G34370 52.459 183 81 3 84 261 19 200 8.90e-65 205
MS.gene80323.t1 AT1G34370 53.804 184 77 4 84 261 229 410 1.60e-63 207
MS.gene80323.t1 AT1G34370 53.804 184 77 4 84 261 229 410 1.60e-63 207
MS.gene80323.t1 AT5G22890 48.768 203 99 2 52 250 170 371 2.59e-62 201
MS.gene80323.t1 AT1G08290 39.007 141 80 5 101 239 182 318 1.31e-21 93.2
MS.gene80323.t1 AT1G13290 37.415 147 87 4 101 245 103 246 2.43e-21 92.0
MS.gene80323.t1 AT1G51220 39.189 148 83 6 101 246 180 322 5.97e-21 91.3
MS.gene80323.t1 AT5G60470 33.333 156 92 5 75 230 51 194 1.22e-20 91.7
MS.gene80323.t1 AT5G60470 33.333 156 92 5 75 230 47 190 1.23e-20 91.7
MS.gene80323.t1 AT5G66730 35.135 148 85 5 83 230 45 181 1.62e-20 91.3
MS.gene80323.t1 AT5G44160 33.784 148 87 5 83 230 50 186 1.74e-20 91.3
MS.gene80323.t1 AT5G44160 33.784 148 87 5 83 230 11 147 1.79e-20 90.9
MS.gene80323.t1 AT5G60470 32.886 149 90 4 82 230 47 185 2.17e-20 90.9
MS.gene80323.t1 AT3G20880 37.107 159 93 6 101 257 258 411 2.21e-20 90.5
MS.gene80323.t1 AT3G45260 30.814 172 105 5 83 254 52 209 2.41e-20 90.9
MS.gene80323.t1 AT3G45260 30.814 172 105 5 83 254 52 209 2.41e-20 90.9
MS.gene80323.t1 AT5G03150 34.932 146 85 4 85 230 68 203 3.39e-20 90.5
MS.gene80323.t1 AT1G03840 33.775 151 89 5 80 230 49 188 3.89e-20 90.5
MS.gene80323.t1 AT1G03840 33.784 148 87 5 83 230 54 190 1.02e-19 89.0
MS.gene80323.t1 AT3G50700 34.911 169 93 7 62 230 32 183 1.61e-19 88.2
MS.gene80323.t1 AT1G55110 31.737 167 100 5 83 249 76 228 3.84e-19 87.4
MS.gene80323.t1 AT1G55110 31.737 167 100 5 83 249 76 228 3.84e-19 87.4
MS.gene80323.t1 AT1G55110 31.737 167 100 5 83 249 76 228 3.84e-19 87.4
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 83 220 1.27e-18 85.9
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 83 220 1.27e-18 85.9
MS.gene80323.t1 AT1G34790 35.329 167 97 8 92 252 137 298 1.40e-18 84.3
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 78 215 1.45e-18 85.9
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 64 201 1.47e-18 85.9
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 84 221 1.68e-18 85.5
MS.gene80323.t1 AT3G13810 33.784 148 88 4 83 230 70 207 1.80e-18 85.5
MS.gene80323.t1 AT2G02080 30.000 190 112 8 75 260 61 233 2.56e-18 85.1
MS.gene80323.t1 AT2G02080 30.000 190 112 8 75 260 61 233 2.56e-18 85.1
MS.gene80323.t1 AT2G02080 30.000 190 112 8 75 260 61 233 2.56e-18 85.1
MS.gene80323.t1 AT2G02080 30.000 190 112 8 75 260 61 233 2.56e-18 85.1
MS.gene80323.t1 AT2G02070 31.373 153 94 5 78 230 60 201 2.85e-18 85.1
MS.gene80323.t1 AT2G02070 31.373 153 94 5 78 230 60 201 2.85e-18 85.1
MS.gene80323.t1 AT4G02670 34.459 148 87 5 83 230 68 205 6.09e-18 83.6
MS.gene80323.t1 AT4G02670 34.459 148 87 5 83 230 66 203 6.51e-18 83.6
MS.gene80323.t1 AT3G57670 35.862 145 86 6 101 243 219 358 9.23e-18 82.8
MS.gene80323.t1 AT1G14580 31.410 156 94 6 75 230 60 202 1.07e-17 83.2
MS.gene80323.t1 AT1G14580 31.410 156 94 6 75 230 60 202 1.07e-17 83.2
MS.gene80323.t1 AT1G14580 31.410 156 94 6 75 230 74 216 1.13e-17 83.2
MS.gene80323.t1 AT2G02080 29.825 171 101 7 94 260 1 156 4.34e-16 78.2
MS.gene80323.t1 AT2G02080 29.825 171 101 7 94 260 1 156 4.34e-16 78.2
MS.gene80323.t1 AT2G01940 34.395 157 86 7 78 230 52 195 6.02e-16 77.8
MS.gene80323.t1 AT1G25250 34.228 149 88 5 83 230 46 185 7.30e-16 77.4
MS.gene80323.t1 AT1G25250 34.228 149 88 5 83 230 23 162 7.55e-16 77.0
MS.gene80323.t1 AT1G68130 34.228 149 87 5 83 230 54 192 1.60e-15 76.6
MS.gene80323.t1 AT2G01940 33.793 145 79 7 78 218 52 183 6.26e-13 68.9

Find 71 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 2.4:+42244692 MS.gene80323:CDS
GGAGGAATTGTTATTGTTTC+TGG 0.118268 2.4:-42244004 None:intergenic
GGAAGGTTTCTTTGATGATT+TGG 0.263746 2.4:+42244681 MS.gene80323:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 2.4:-42244059 None:intergenic
TTCCTCCAACCGAGTGTTAC+TGG 0.302145 2.4:+42244020 MS.gene80323:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 2.4:-42244107 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 2.4:+42244308 MS.gene80323:CDS
GACAATGACTTCTCTTGAAA+TGG 0.326614 2.4:-42244378 None:intergenic
TCCACTTCTGCAAGATTTGC+GGG 0.327725 2.4:+42244152 MS.gene80323:CDS
AGTGAGTCTAAGTGTTGTTT+GGG 0.344560 2.4:-42243914 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 2.4:+42244523 MS.gene80323:CDS
GACGAATTGTGGAGGAGATT+TGG 0.390719 2.4:-42243943 None:intergenic
GAGAAGTGTGTTTGTTTGAA+TGG 0.397224 2.4:-42243891 None:intergenic
TGAAAACGGTGTTCTGTTTG+AGG 0.428042 2.4:+42244353 MS.gene80323:CDS
GAGTGAGTCTAAGTGTTGTT+TGG 0.432423 2.4:-42243915 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 2.4:+42244606 MS.gene80323:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 2.4:-42244304 None:intergenic
TTCCACTTCTGCAAGATTTG+CGG 0.446863 2.4:+42244151 MS.gene80323:CDS
TGTGTTTGTTTGAATGGATT+GGG 0.447482 2.4:-42243885 None:intergenic
TTCTGCAAGATTTGCGGGAA+AGG 0.460841 2.4:+42244157 MS.gene80323:CDS
GGACACGTGGAGCGGTTTGA+AGG 0.462859 2.4:+42244544 MS.gene80323:CDS
GTGTGTTTGTTTGAATGGAT+TGG 0.474691 2.4:-42243886 None:intergenic
AATTGTGGAGGAGATTTGGT+TGG 0.477694 2.4:-42243939 None:intergenic
TCCCGCAAATCTTGCAGAAG+TGG 0.485305 2.4:-42244153 None:intergenic
TGATTGCATAGATACGTTAC+CGG 0.493467 2.4:+42244660 MS.gene80323:CDS
GGAAAAGCAAGCGCGTTTAA+CGG 0.496000 2.4:+42244264 MS.gene80323:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 2.4:+42244597 MS.gene80323:CDS
TTGGAATGGTCGTTATGAGT+GGG 0.500470 2.4:-42244088 None:intergenic
CCCACACCTTCCTCTTCTGC+CGG 0.501400 2.4:-42244616 None:intergenic
GAAGTTCAATCCGTTGAAAA+CGG 0.526797 2.4:+42244339 MS.gene80323:CDS
AAATCATCAAAGAAACCTTC+CGG 0.527715 2.4:-42244679 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 2.4:+42244574 MS.gene80323:CDS
GTCCAGTAACACTCGGTTGG+AGG 0.539855 2.4:-42244022 None:intergenic
GAGTCACGTGAAACAGTGTA+GGG 0.546406 2.4:+42244462 MS.gene80323:CDS
GATGATGACTTGACGAATTG+TGG 0.554147 2.4:-42243954 None:intergenic
TGTTATTGTTTCTGGACAAG+TGG 0.555781 2.4:-42243996 None:intergenic
TAACGACCATTCCAAAATTG+TGG 0.557903 2.4:+42244096 MS.gene80323:CDS
CGTATGCACATGCGCGCGCA+CGG 0.560123 2.4:+42244202 MS.gene80323:CDS
GGAGAAATTGTTTGGACACG+TGG 0.562238 2.4:+42244531 MS.gene80323:CDS
CCGGCAGAAGAGGAAGGTGT+GGG 0.568129 2.4:+42244616 MS.gene80323:CDS
CAATTACATTGACGATGACA+TGG 0.570490 2.4:+42244060 MS.gene80323:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 2.4:+42244401 MS.gene80323:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 2.4:+42244407 MS.gene80323:CDS
TGCATAGATACGTTACCGGA+AGG 0.579492 2.4:+42244664 MS.gene80323:CDS
CCAACCGAGTGTTACTGGAC+AGG 0.586148 2.4:+42244025 MS.gene80323:CDS
GCCGGCAGAAGAGGAAGGTG+TGG 0.587117 2.4:+42244615 MS.gene80323:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 2.4:-42244574 None:intergenic
TTTGGAATGGTCGTTATGAG+TGG 0.596386 2.4:-42244089 None:intergenic
AGAGTCACGTGAAACAGTGT+AGG 0.598901 2.4:+42244461 MS.gene80323:CDS
CCTGTCCAGTAACACTCGGT+TGG 0.599661 2.4:-42244025 None:intergenic
GCGGCGCCGGCAGAAGAGGA+AGG 0.609998 2.4:+42244610 MS.gene80323:CDS
GCGGTTTGAAGGACACTCGC+CGG 0.611639 2.4:+42244555 MS.gene80323:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 2.4:+42244490 MS.gene80323:CDS
GCAGAAGAGGAAGGTGTGGG+TGG 0.627397 2.4:+42244619 MS.gene80323:CDS
ACCACCTGTCCAGTAACACT+CGG 0.627426 2.4:-42244029 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 2.4:+42244242 MS.gene80323:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 2.4:+42244111 MS.gene80323:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 2.4:-42244515 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 2.4:+42244536 MS.gene80323:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 2.4:+42244558 MS.gene80323:CDS
ACCGAGTGTTACTGGACAGG+TGG 0.653482 2.4:+42244028 MS.gene80323:CDS
ACACGTGCGATCGGTGTCGG+AGG 0.660805 2.4:+42244410 MS.gene80323:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 2.4:+42244588 MS.gene80323:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 2.4:+42244243 MS.gene80323:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 2.4:+42244591 MS.gene80323:CDS
GCGCGCGCATGTGCATACGT+AGG 0.669149 2.4:-42244198 None:intergenic
GTGAGTCTAAGTGTTGTTTG+GGG 0.679107 2.4:-42243913 None:intergenic
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 2.4:+42244476 MS.gene80323:CDS
GATGACTTGACGAATTGTGG+AGG 0.731309 2.4:-42243951 None:intergenic
AGTCACGTGAAACAGTGTAG+GGG 0.737402 2.4:+42244463 MS.gene80323:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 2.4:-42244491 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr2.4:42244693-42244712 MS.gene80323:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr2.4:42244692-42244711 MS.gene80323:CDS 20.0%
AAATCATCAAAGAAACCTTC+CGG - chr2.4:42244682-42244701 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr2.4:42244588-42244607 MS.gene80323:CDS 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr2.4:42243888-42243907 None:intergenic 30.0%
CAATTACATTGACGATGACA+TGG + chr2.4:42244060-42244079 MS.gene80323:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr2.4:42244062-42244081 None:intergenic 35.0%
GAAGTTCAATCCGTTGAAAA+CGG + chr2.4:42244339-42244358 MS.gene80323:CDS 35.0%
GACAATGACTTCTCTTGAAA+TGG - chr2.4:42244381-42244400 None:intergenic 35.0%
GTGTGTTTGTTTGAATGGAT+TGG - chr2.4:42243889-42243908 None:intergenic 35.0%
TAACGACCATTCCAAAATTG+TGG + chr2.4:42244096-42244115 MS.gene80323:CDS 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr2.4:42244523-42244542 MS.gene80323:CDS 35.0%
TGATTGCATAGATACGTTAC+CGG + chr2.4:42244660-42244679 MS.gene80323:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr2.4:42244307-42244326 None:intergenic 35.0%
! AAACAGAACACCGTTTTCAA+CGG - chr2.4:42244352-42244371 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr2.4:42244292-42244311 MS.gene80323:CDS 35.0%
! GAGAAGTGTGTTTGTTTGAA+TGG - chr2.4:42243894-42243913 None:intergenic 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr2.4:42244681-42244700 MS.gene80323:CDS 35.0%
! GGAGGAATTGTTATTGTTTC+TGG - chr2.4:42244007-42244026 None:intergenic 35.0%
!! AGTGAGTCTAAGTGTTGTTT+GGG - chr2.4:42243917-42243936 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr2.4:42243999-42244018 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr2.4:42244308-42244327 MS.gene80323:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr2.4:42244591-42244610 MS.gene80323:CDS 40.0%
GATGATGACTTGACGAATTG+TGG - chr2.4:42243957-42243976 None:intergenic 40.0%
TGAAAACGGTGTTCTGTTTG+AGG + chr2.4:42244353-42244372 MS.gene80323:CDS 40.0%
TTCCACTTCTGCAAGATTTG+CGG + chr2.4:42244151-42244170 MS.gene80323:CDS 40.0%
TTGGAATGGTCGTTATGAGT+GGG - chr2.4:42244091-42244110 None:intergenic 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr2.4:42244518-42244537 None:intergenic 40.0%
! AATTGTGGAGGAGATTTGGT+TGG - chr2.4:42243942-42243961 None:intergenic 40.0%
! GAGTGAGTCTAAGTGTTGTT+TGG - chr2.4:42243918-42243937 None:intergenic 40.0%
! TTTGGAATGGTCGTTATGAG+TGG - chr2.4:42244092-42244111 None:intergenic 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr2.4:42244105-42244124 None:intergenic 40.0%
!! GTGAGTCTAAGTGTTGTTTG+GGG - chr2.4:42243916-42243935 None:intergenic 40.0%
!!! TGTGGGTGGATTTTTTACGA+AGG + chr2.4:42244633-42244652 MS.gene80323:CDS 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr2.4:42244536-42244555 MS.gene80323:CDS 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr2.4:42244461-42244480 MS.gene80323:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr2.4:42244463-42244482 MS.gene80323:CDS 45.0%
GACGAATTGTGGAGGAGATT+TGG - chr2.4:42243946-42243965 None:intergenic 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr2.4:42244462-42244481 MS.gene80323:CDS 45.0%
GATGACTTGACGAATTGTGG+AGG - chr2.4:42243954-42243973 None:intergenic 45.0%
GGAAAAGCAAGCGCGTTTAA+CGG + chr2.4:42244264-42244283 MS.gene80323:CDS 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr2.4:42244531-42244550 MS.gene80323:CDS 45.0%
TCCACTTCTGCAAGATTTGC+GGG + chr2.4:42244152-42244171 MS.gene80323:CDS 45.0%
TGCATAGATACGTTACCGGA+AGG + chr2.4:42244664-42244683 MS.gene80323:CDS 45.0%
TTCTGCAAGATTTGCGGGAA+AGG + chr2.4:42244157-42244176 MS.gene80323:CDS 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr2.4:42244110-42244129 None:intergenic 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr2.4:42244510-42244529 MS.gene80323:CDS 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr2.4:42244111-42244130 MS.gene80323:CDS 50.0%
ACCACCTGTCCAGTAACACT+CGG - chr2.4:42244032-42244051 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr2.4:42244577-42244596 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr2.4:42244401-42244420 MS.gene80323:CDS 50.0%
TCCCGCAAATCTTGCAGAAG+TGG - chr2.4:42244156-42244175 None:intergenic 50.0%
TTCCTCCAACCGAGTGTTAC+TGG + chr2.4:42244020-42244039 MS.gene80323:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr2.4:42244242-42244261 MS.gene80323:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr2.4:42244403-42244422 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr2.4:42244506-42244525 MS.gene80323:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr2.4:42244432-42244451 MS.gene80323:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr2.4:42244423-42244442 MS.gene80323:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr2.4:42244243-42244262 MS.gene80323:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr2.4:42244597-42244616 MS.gene80323:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr2.4:42244574-42244593 MS.gene80323:CDS 55.0%
CCTGTCCAGTAACACTCGGT+TGG - chr2.4:42244028-42244047 None:intergenic 55.0%
GTCCAGTAACACTCGGTTGG+AGG - chr2.4:42244025-42244044 None:intergenic 55.0%
TCCACACGAACACTTCCACG+TGG - chr2.4:42244494-42244513 None:intergenic 55.0%
! ACCGAGTGTTACTGGACAGG+TGG + chr2.4:42244028-42244047 MS.gene80323:CDS 55.0%
! CCAACCGAGTGTTACTGGAC+AGG + chr2.4:42244025-42244044 MS.gene80323:CDS 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr2.4:42244426-42244445 MS.gene80323:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr2.4:42244490-42244509 MS.gene80323:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr2.4:42244476-42244495 MS.gene80323:CDS 60.0%
CCCACACCTTCCTCTTCTGC+CGG - chr2.4:42244619-42244638 None:intergenic 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr2.4:42244407-42244426 MS.gene80323:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr2.4:42244555-42244574 MS.gene80323:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr2.4:42244544-42244563 MS.gene80323:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr2.4:42244558-42244577 MS.gene80323:CDS 60.0%
! CCGGCAGAAGAGGAAGGTGT+GGG + chr2.4:42244616-42244635 MS.gene80323:CDS 60.0%
! GCAGAAGAGGAAGGTGTGGG+TGG + chr2.4:42244619-42244638 MS.gene80323:CDS 60.0%
CGTATGCACATGCGCGCGCA+CGG + chr2.4:42244202-42244221 MS.gene80323:CDS 65.0%
GCCGGCAGAAGAGGAAGGTG+TGG + chr2.4:42244615-42244634 MS.gene80323:CDS 65.0%
GCGCGCGCATGTGCATACGT+AGG - chr2.4:42244201-42244220 None:intergenic 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr2.4:42244410-42244429 MS.gene80323:CDS 65.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr2.4:42244610-42244629 MS.gene80323:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr2.4:42244606-42244625 MS.gene80323:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 42243860 42244720 42243860 ID=MS.gene80323
chr2.4 mRNA 42243860 42244720 42243860 ID=MS.gene80323.t1;Parent=MS.gene80323
chr2.4 exon 42243860 42244720 42243860 ID=MS.gene80323.t1.exon1;Parent=MS.gene80323.t1
chr2.4 CDS 42243860 42244720 42243860 ID=cds.MS.gene80323.t1;Parent=MS.gene80323.t1
Gene Sequence

>MS.gene80323

ATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTTCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTGTTACTGGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCACTCATAACGACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCAAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTACGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAAACGGTGTTCTGTTTGAGGAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTGGATTTTTTACGAAGGAAAATGATTGCATAGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene80323.t1

MDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPETITIPPTECYWTGGEKTNYIDDDMANPTHNDHSKIVELDAVELLAKHFHFCKICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKTVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGGFFTKENDCIDTLPEGFFDDLDKFWV