AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80452

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80452.t1 MTR_6g044690 90.265 565 54 1 1 564 1 565 0.0 1028
MS.gene80452.t1 MTR_0376s0030 74.523 577 136 4 1 569 1 574 0.0 867
MS.gene80452.t1 MTR_6g043960 84.294 503 59 1 62 564 1 483 0.0 867
MS.gene80452.t1 MTR_2g054460 77.264 519 58 3 52 564 1 465 0.0 795
MS.gene80452.t1 MTR_1g035420 59.520 583 188 12 5 570 105 656 0.0 659
MS.gene80452.t1 MTR_8g070070 51.047 621 226 12 12 569 160 765 0.0 594
MS.gene80452.t1 MTR_8g070075 49.188 616 238 14 12 569 160 758 0.0 570
MS.gene80452.t1 MTR_8g071030 49.746 591 243 11 12 563 162 737 0.0 558
MS.gene80452.t1 MTR_1g035400 56.214 523 195 9 55 563 63 565 0.0 558
MS.gene80452.t1 MTR_7g088370 39.709 481 250 11 100 565 227 682 9.63e-101 320
MS.gene80452.t1 MTR_8g042750 35.917 529 285 15 60 567 167 662 1.80e-94 303
MS.gene80452.t1 MTR_4g010830 38.689 473 240 13 109 561 507 949 2.81e-90 299
MS.gene80452.t1 MTR_3g011440 34.799 523 295 13 60 564 141 635 1.81e-89 290
MS.gene80452.t1 MTR_5g013420 37.773 503 258 15 85 561 585 1058 2.44e-89 298
MS.gene80452.t1 MTR_5g013420 37.773 503 258 15 85 561 585 1058 2.69e-89 298
MS.gene80452.t1 MTR_6g061270 35.041 488 270 12 109 565 196 667 3.96e-81 268
MS.gene80452.t1 MTR_4g010550 35.892 482 232 16 98 561 11 433 1.36e-80 261
MS.gene80452.t1 MTR_7g084090 34.739 498 279 13 99 565 248 730 1.58e-79 265
MS.gene80452.t1 MTR_6g061200 34.864 479 254 16 109 565 196 638 3.97e-73 246
MS.gene80452.t1 MTR_7g084090 37.135 377 200 11 99 451 248 611 7.11e-64 221
MS.gene80452.t1 MTR_6g044000 84.956 113 17 0 62 174 1 113 6.00e-59 194
MS.gene80452.t1 MTR_6g044000 96.296 54 2 0 511 564 117 170 8.19e-31 118
MS.gene80452.t1 MTR_1g048950 32.892 453 250 11 130 561 88 507 1.74e-52 188
MS.gene80452.t1 MTR_7g445710 30.021 473 242 14 114 565 112 516 1.14e-49 180
MS.gene80452.t1 MTR_7g445530 29.237 472 239 13 114 561 112 512 5.15e-49 178
MS.gene80452.t1 MTR_7g450730 30.088 452 234 14 114 565 109 478 2.16e-45 167
MS.gene80452.t1 MTR_7g052480 28.707 317 200 12 263 565 225 529 2.65e-30 125
MS.gene80452.t1 MTR_7g445600 33.113 151 63 2 411 561 243 355 2.50e-21 96.3
MS.gene80452.t1 MTR_7g445600 34.711 121 73 3 114 233 108 223 6.01e-12 67.8
MS.gene80452.t1 MTR_5g018850 28.620 297 162 10 305 566 1207 1488 7.53e-20 94.7
MS.gene80452.t1 MTR_8g078505 29.609 179 112 3 386 564 354 518 3.05e-19 91.7
MS.gene80452.t1 MTR_1g069570 25.490 306 166 10 309 565 430 722 7.42e-19 90.9
MS.gene80452.t1 MTR_4g132610 28.934 197 109 4 379 565 852 1027 2.50e-18 89.7
MS.gene80452.t1 MTR_1g080340 27.500 240 147 9 333 565 343 562 6.85e-18 87.8
MS.gene80452.t1 MTR_8g078490 28.426 197 110 4 379 565 1058 1233 6.86e-18 88.2
MS.gene80452.t1 MTR_7g098390 27.039 233 148 9 334 563 463 676 5.58e-15 78.6
MS.gene80452.t1 MTR_1g069570 26.154 260 131 9 309 520 430 676 1.04e-14 77.8
MS.gene80452.t1 MTR_5g098680 30.000 180 97 5 123 280 244 416 1.22e-13 74.3
MS.gene80452.t1 MTR_4g131630 59.615 52 18 1 508 559 1 49 3.62e-12 61.6
MS.gene80452.t1 MTR_8g102580 30.573 157 89 4 137 280 261 410 2.31e-11 67.0
MS.gene80452.t1 MTR_7g445810 29.801 151 97 3 114 261 125 269 2.53e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80452.t1 AT4G13460 49.635 548 234 12 34 563 115 638 9.23e-175 509
MS.gene80452.t1 AT4G13460 49.635 548 234 12 34 563 115 638 9.23e-175 509
MS.gene80452.t1 AT2G33290 49.074 540 236 12 45 569 132 647 6.30e-171 499
MS.gene80452.t1 AT2G33290 49.074 540 236 12 45 569 132 647 6.30e-171 499
MS.gene80452.t1 AT2G33290 49.074 540 236 12 45 569 132 647 6.30e-171 499
MS.gene80452.t1 AT2G33290 49.074 540 236 12 45 569 132 647 6.30e-171 499
MS.gene80452.t1 AT5G04940 34.906 530 275 15 60 563 155 640 3.02e-85 279
MS.gene80452.t1 AT5G04940 34.906 530 275 15 60 563 155 640 3.02e-85 279
MS.gene80452.t1 AT2G22740 33.396 533 289 11 60 565 270 763 4.37e-84 278
MS.gene80452.t1 AT2G22740 33.396 533 289 11 60 565 270 763 4.37e-84 278
MS.gene80452.t1 AT1G73100 37.421 473 256 14 114 566 190 642 5.58e-84 275
MS.gene80452.t1 AT2G35160 33.514 552 298 14 25 565 238 731 2.20e-83 276
MS.gene80452.t1 AT2G35160 33.514 552 298 14 25 565 274 767 6.16e-83 275
MS.gene80452.t1 AT2G35160 33.514 552 298 14 25 565 274 767 6.16e-83 275
MS.gene80452.t1 AT2G35160 33.514 552 298 14 25 565 274 767 6.16e-83 275
MS.gene80452.t1 AT2G35160 33.514 552 298 14 25 565 274 767 6.16e-83 275
MS.gene80452.t1 AT5G13960 34.335 466 264 16 129 565 11 463 1.55e-74 246
MS.gene80452.t1 AT1G17770 31.076 576 342 15 19 563 110 661 2.47e-74 250
MS.gene80452.t1 AT5G13960 34.156 486 277 17 109 565 126 597 4.23e-74 248
MS.gene80452.t1 AT2G24740 36.722 482 249 18 109 568 285 732 1.24e-72 247
MS.gene80452.t1 AT5G47150 41.111 180 89 5 109 279 153 324 3.19e-31 124
MS.gene80452.t1 AT2G23740 29.371 286 156 8 305 562 1089 1356 1.04e-22 103
MS.gene80452.t1 AT2G23740 29.371 286 156 8 305 562 1089 1356 1.04e-22 103
MS.gene80452.t1 AT2G23740 29.371 286 156 8 305 562 1089 1356 1.04e-22 103
MS.gene80452.t1 AT2G23740 29.371 286 156 8 305 562 1082 1349 1.10e-22 103
MS.gene80452.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.00e-22 99.8
MS.gene80452.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.00e-22 99.8
MS.gene80452.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.00e-22 99.8
MS.gene80452.t1 AT3G03750 29.078 282 159 10 309 568 68 330 1.97e-19 90.5
MS.gene80452.t1 AT2G23740 29.918 244 125 8 305 520 1089 1314 2.89e-17 86.3
MS.gene80452.t1 AT2G23740 29.918 244 125 8 305 520 1089 1314 2.89e-17 86.3
MS.gene80452.t1 AT2G05900 33.333 198 115 9 150 337 1 191 4.06e-16 80.1
MS.gene80452.t1 AT1G57820 29.282 181 98 6 123 280 254 427 8.66e-13 71.6
MS.gene80452.t1 AT1G57820 29.282 181 98 6 123 280 254 427 8.66e-13 71.6
MS.gene80452.t1 AT1G57820 29.775 178 98 7 123 280 254 424 1.32e-12 70.9
MS.gene80452.t1 AT5G39550 28.729 181 99 7 123 280 239 412 2.05e-11 67.0

Find 125 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTATGATCATGGTAAT+TGG 0.190966 6.3:-38486329 MS.gene80452:CDS
ATAAAAGTTCCAGCTAAAAT+AGG 0.203094 6.3:+38486612 None:intergenic
CTCTGAGGAAGCAAGAATTT+TGG 0.214710 6.3:+38486894 None:intergenic
ATTGAATGTTGGTTTGAAAA+AGG 0.222300 6.3:-38487158 MS.gene80452:CDS
GGTTGCCTCGTTCCAACTTC+TGG 0.257365 6.3:+38487300 None:intergenic
TTTATAAGTTTATGTTATCT+AGG 0.300253 6.3:-38487118 MS.gene80452:CDS
TATTCGTGTGTCAGGTTTGC+TGG 0.316438 6.3:-38487705 MS.gene80452:CDS
AGGATCATACTACCCATCTT+AGG 0.317543 6.3:+38487083 None:intergenic
ACATAGGATTAGAACATAAT+TGG 0.321952 6.3:+38487033 None:intergenic
GACCTATTCAAAAGTCGATT+TGG 0.335734 6.3:+38486504 None:intergenic
AGAAACCGTGTGACACAAAA+AGG 0.338747 6.3:-38486699 MS.gene80452:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 6.3:-38487521 MS.gene80452:CDS
TGGAACGATGGCGCGCGATA+TGG 0.343186 6.3:+38487895 None:intergenic
TGTTATTCACTTCTTCTGTC+TGG 0.365058 6.3:+38487627 None:intergenic
TAAGCATACTTGCTTCCTTA+AGG 0.369544 6.3:+38487063 None:intergenic
ATGAGACTAGTTGGGGAGTT+AGG 0.370168 6.3:-38486644 MS.gene80452:CDS
TATCTTGATAAGAAAATCAT+TGG 0.372117 6.3:-38487545 MS.gene80452:CDS
AAAATCATTGGTCCAGTTCC+TGG 0.372423 6.3:-38487533 MS.gene80452:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 6.3:+38486351 None:intergenic
AAATCTATGCAGAAGCTTAG+AGG 0.379307 6.3:-38487818 MS.gene80452:CDS
TGCAATATGAGATTGATGTT+AGG 0.379723 6.3:-38487259 MS.gene80452:CDS
TGCGAAGGACAACTACAAAA+AGG 0.399229 6.3:+38486726 None:intergenic
TTTGATTCTATTCGTGTGTC+AGG 0.403272 6.3:-38487713 MS.gene80452:CDS
TAGATCTAATGAGACTAGTT+GGG 0.409391 6.3:-38486652 MS.gene80452:CDS
GCAATATGAGATTGATGTTA+GGG 0.414210 6.3:-38487258 MS.gene80452:CDS
TAAAAGTTCCAGCTAAAATA+GGG 0.417727 6.3:+38486613 None:intergenic
GAATAGGTCCACTCAAGAAT+GGG 0.418584 6.3:-38486490 MS.gene80452:CDS
CAGCAGCTATCAAGTCATTT+CGG 0.419039 6.3:+38487597 None:intergenic
TAGTTGGGGAGTTAGGTCTT+TGG 0.423498 6.3:-38486637 MS.gene80452:CDS
CATGCTAGTATGAGTTCAAA+TGG 0.428617 6.3:-38487422 MS.gene80452:CDS
GAACAAACACATTTGGAGTT+GGG 0.430179 6.3:+38486358 None:intergenic
CCATCTTATGTTATTTGCAA+TGG 0.433181 6.3:-38486298 MS.gene80452:CDS
TGTATAAGATAATTGAATGT+TGG 0.433790 6.3:-38487169 MS.gene80452:CDS
GAGTGTTGTGAATGCGTTGA+TGG 0.434282 6.3:-38486840 MS.gene80452:CDS
GTCCGTATCGTGAGATGGTC+CGG 0.436727 6.3:-38487751 MS.gene80452:CDS
TTAGATCTAATGAGACTAGT+TGG 0.437286 6.3:-38486653 MS.gene80452:CDS
GGTTCAAGGTCAACCTAAGA+TGG 0.441183 6.3:-38487096 MS.gene80452:CDS
TGAATAGGTCCACTCAAGAA+TGG 0.445312 6.3:-38486491 MS.gene80452:CDS
CAATTAGTTCTCTATGATCA+TGG 0.448311 6.3:-38486336 MS.gene80452:CDS
CCATTGCAAATAACATAAGA+TGG 0.449331 6.3:+38486298 None:intergenic
TGGTACTTCTACTACTAGTA+AGG 0.451010 6.3:-38487210 MS.gene80452:CDS
AGAATAATCGTAAGAACAAA+AGG 0.453219 6.3:-38487676 MS.gene80452:CDS
GATGGGTAGTATGATCCTTA+AGG 0.457082 6.3:-38487078 MS.gene80452:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 6.3:-38487386 MS.gene80452:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 6.3:+38487521 None:intergenic
TGAACAAACACATTTGGAGT+TGG 0.468046 6.3:+38486357 None:intergenic
CAAACAATATTCTTGTTCTC+CGG 0.476545 6.3:+38487732 None:intergenic
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 6.3:-38487482 MS.gene80452:CDS
ATTTCTGATGATATTTCCAA+TGG 0.480319 6.3:-38487005 MS.gene80452:CDS
TCCAATGGGAAGGAGAATAT+CGG 0.490604 6.3:-38486990 MS.gene80452:CDS
TTTATGTTATCTAGGGTTCA+AGG 0.492567 6.3:-38487110 MS.gene80452:CDS
CATTGCAAATAACATAAGAT+GGG 0.496606 6.3:+38486299 None:intergenic
ACTTTACCTTATAGTAAAAG+TGG 0.504320 6.3:-38486789 MS.gene80452:CDS
ACCGATATTCTCCTTCCCAT+TGG 0.505724 6.3:+38486989 None:intergenic
AAAAGGTATTAAATATAGGT+TGG 0.507633 6.3:-38486682 MS.gene80452:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 6.3:+38486264 None:intergenic
CAGAAGAAGTGAATAACAGT+AGG 0.509848 6.3:-38487622 MS.gene80452:CDS
TGGAAGATACTCAAATTGCA+TGG 0.512091 6.3:+38486929 None:intergenic
CTTGCTTCCTCAGAGCATGA+TGG 0.513053 6.3:-38486886 MS.gene80452:CDS
AGAGTTATGTTCACCATCCA+TGG 0.513297 6.3:+38486539 None:intergenic
CACAACCACACTAGTAGCAA+TGG 0.513662 6.3:+38487394 None:intergenic
CTCGTCGGGAACTGGAACGA+TGG 0.514539 6.3:+38487883 None:intergenic
TATAACAACAACACTCTGGC+GGG 0.515349 6.3:-38487851 MS.gene80452:CDS
GGAGACAAAATTATCTACTC+TGG 0.518712 6.3:-38487344 MS.gene80452:CDS
GATCATGGGGTAGAATTGAC+TGG 0.518778 6.3:-38486243 MS.gene80452:CDS
AATCTATGCAGAAGCTTAGA+GGG 0.518975 6.3:-38487817 MS.gene80452:CDS
TACACGGTCAACCACAAGCT+GGG 0.519450 6.3:-38487457 MS.gene80452:CDS
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 6.3:-38486258 MS.gene80452:CDS
TGATGATATTTCCAATGGGA+AGG 0.528993 6.3:-38487000 MS.gene80452:CDS
ATTGATGTTAGGGTTATTCG+AGG 0.529934 6.3:-38487248 MS.gene80452:CDS
GAGAGCTTAGTCTTGATCAT+GGG 0.530152 6.3:-38486257 MS.gene80452:CDS
TTATAAGTTTATGTTATCTA+GGG 0.530619 6.3:-38487117 MS.gene80452:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 6.3:+38486267 None:intergenic
ACATCCAATGCAAAATCTAA+AGG 0.535372 6.3:+38486420 None:intergenic
CTCCCTAGTCAAAACAAGCC+CGG 0.538168 6.3:+38486578 None:intergenic
TGGCCATGGTGATGTGAAGC+AGG 0.545724 6.3:-38487324 MS.gene80452:CDS
AAATCTAAAGGAGGATATGC+GGG 0.546981 6.3:+38486432 None:intergenic
TCATCAGAAATGACATACAT+AGG 0.547565 6.3:+38487017 None:intergenic
TGGGCTATGACTAATATAGC+TGG 0.552213 6.3:+38486377 None:intergenic
ACAACCACACTAGTAGCAAT+GGG 0.558434 6.3:+38487395 None:intergenic
GGAAGATACTCAAATTGCAT+GGG 0.562606 6.3:+38486930 None:intergenic
CTCCGGACCATCTCACGATA+CGG 0.564668 6.3:+38487749 None:intergenic
GGAGCTTGTTCGCACTGCGA+TGG 0.569900 6.3:-38487786 MS.gene80452:CDS
TCACCGTCCGTATCGTGAGA+TGG 0.572522 6.3:-38487756 MS.gene80452:CDS
GGAACGAGGCAACCTTGCTA+TGG 0.574021 6.3:-38487291 MS.gene80452:CDS
TGTGAAGCAGGACCAGAAGT+TGG 0.574915 6.3:-38487312 MS.gene80452:CDS
GTGTTGTCATTCATGATCAA+AGG 0.577085 6.3:+38486810 None:intergenic
TTTCTGATGATATTTCCAAT+GGG 0.579478 6.3:-38487004 MS.gene80452:CDS
AGATCTAATGAGACTAGTTG+GGG 0.582316 6.3:-38486651 MS.gene80452:CDS
AGGTCATTAATTTATGAATG+TGG 0.583798 6.3:-38486750 MS.gene80452:CDS
GGATATAATGATGATGATCA+AGG 0.586899 6.3:-38487365 MS.gene80452:CDS
TTACACGGTCAACCACAAGC+TGG 0.590249 6.3:-38487458 MS.gene80452:CDS
CTTTACCTTATAGTAAAAGT+GGG 0.590971 6.3:-38486788 MS.gene80452:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 6.3:+38486268 None:intergenic
GCAATTTGAGTATCTTCCAA+AGG 0.598627 6.3:-38486925 MS.gene80452:CDS
AAATTATAACAACAACACTC+TGG 0.601116 6.3:-38487855 MS.gene80452:CDS
TTATAACAACAACACTCTGG+CGG 0.601292 6.3:-38487852 MS.gene80452:CDS
GCATACTTGTCACCATAGCA+AGG 0.603748 6.3:+38487279 None:intergenic
GTTCAAGGTCAACCTAAGAT+GGG 0.609539 6.3:-38487095 MS.gene80452:CDS
AGAAGAAGTGAATAACAGTA+GGG 0.609908 6.3:-38487621 MS.gene80452:CDS
ACGATGGCGCGCGATATGGA+AGG 0.611075 6.3:+38487899 None:intergenic
GCTGCTTTGATGAATGATCA+TGG 0.613817 6.3:-38487578 MS.gene80452:CDS
CAAATCACCCCATTCTTGAG+TGG 0.617795 6.3:+38486482 None:intergenic
AAAATCTAAAGGAGGATATG+CGG 0.621572 6.3:+38486431 None:intergenic
AAAATTATCTACTCTGGCCA+TGG 0.625235 6.3:-38487338 MS.gene80452:CDS
ATTTGAGTATCTTCCAAAGG+CGG 0.626193 6.3:-38486922 MS.gene80452:CDS
TTCCTCAGAGCATGATGGAG+AGG 0.627575 6.3:-38486881 MS.gene80452:CDS
TCCAATGCAAAATCTAAAGG+AGG 0.629567 6.3:+38486423 None:intergenic
ATTGCAAATAACATAAGATG+GGG 0.634153 6.3:+38486300 None:intergenic
ACACGGTTTCTGCAATGCGA+AGG 0.638201 6.3:+38486711 None:intergenic
AGAGCTTAGTCTTGATCATG+GGG 0.638779 6.3:-38486256 MS.gene80452:CDS
CCTACCCATTGCTACTAGTG+TGG 0.640494 6.3:-38487399 MS.gene80452:CDS
GAAGCTTAGAGGGCAAAACA+AGG 0.642239 6.3:-38487807 MS.gene80452:CDS
GAAGCAAGTATGCTTAAGAG+AGG 0.642544 6.3:-38487056 MS.gene80452:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 6.3:-38486407 MS.gene80452:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 6.3:+38487446 None:intergenic
TTCCTCTCCATCATGCTCTG+AGG 0.646004 6.3:+38486879 None:intergenic
CGATGGCGCGCGATATGGAA+GGG 0.646458 6.3:+38487900 None:intergenic
GGTCCTGCTTCACATCACCA+TGG 0.648806 6.3:+38487321 None:intergenic
CCACACTAGTAGCAATGGGT+AGG 0.648972 6.3:+38487399 None:intergenic
ATATCACCAATACAAACACC+AGG 0.674752 6.3:+38487515 None:intergenic
CAGGACCAGAAGTTGGAACG+AGG 0.677973 6.3:-38487305 MS.gene80452:CDS
AATAGGTCCACTCAAGAATG+GGG 0.681347 6.3:-38486489 MS.gene80452:CDS
GGACCATCTCACGATACGGA+CGG 0.685403 6.3:+38487753 None:intergenic
ATGTGTGTGATTGGTTTACA+CGG 0.697183 6.3:-38487473 MS.gene80452:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCTA+GGG - chr6.3:38487033-38487052 MS.gene80452:CDS 15.0%
!! TTTATAAGTTTATGTTATCT+AGG - chr6.3:38487032-38487051 MS.gene80452:CDS 15.0%
!! TATCTTGATAAGAAAATCAT+TGG - chr6.3:38486605-38486624 MS.gene80452:CDS 20.0%
!! TGTATAAGATAATTGAATGT+TGG - chr6.3:38486981-38487000 MS.gene80452:CDS 20.0%
!!! AAAAGGTATTAAATATAGGT+TGG - chr6.3:38487468-38487487 MS.gene80452:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG - chr6.3:38487464-38487483 MS.gene80452:CDS 20.0%
! AAATTATAACAACAACACTC+TGG - chr6.3:38486295-38486314 MS.gene80452:CDS 25.0%
! ACATAGGATTAGAACATAAT+TGG + chr6.3:38487120-38487139 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG + chr6.3:38487802-38487821 None:intergenic 25.0%
! ACTTTACCTTATAGTAAAAG+TGG - chr6.3:38487361-38487380 MS.gene80452:CDS 25.0%
! AGAATAATCGTAAGAACAAA+AGG - chr6.3:38486474-38486493 MS.gene80452:CDS 25.0%
! AGGTCATTAATTTATGAATG+TGG - chr6.3:38487400-38487419 MS.gene80452:CDS 25.0%
! ATAAAAGTTCCAGCTAAAAT+AGG + chr6.3:38487541-38487560 None:intergenic 25.0%
! ATTGCAAATAACATAAGATG+GGG + chr6.3:38487853-38487872 None:intergenic 25.0%
! ATTTCTGATGATATTTCCAA+TGG - chr6.3:38487145-38487164 MS.gene80452:CDS 25.0%
! CATTGCAAATAACATAAGAT+GGG + chr6.3:38487854-38487873 None:intergenic 25.0%
! CTTTACCTTATAGTAAAAGT+GGG - chr6.3:38487362-38487381 MS.gene80452:CDS 25.0%
! TAAAAGTTCCAGCTAAAATA+GGG + chr6.3:38487540-38487559 None:intergenic 25.0%
! TTTCTGATGATATTTCCAAT+GGG - chr6.3:38487146-38487165 MS.gene80452:CDS 25.0%
!! GTTATAATTTTGTAACTCGT+CGG + chr6.3:38486285-38486304 None:intergenic 25.0%
!! TTATAATTTTGTAACTCGTC+GGG + chr6.3:38486284-38486303 None:intergenic 25.0%
!!! AAAAGTGGGTTTCTTTTAAA+AGG - chr6.3:38487376-38487395 MS.gene80452:CDS 25.0%
!!! AAAGTGGGTTTCTTTTAAAA+GGG - chr6.3:38487377-38487396 MS.gene80452:CDS 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG - chr6.3:38486956-38486975 MS.gene80452:CDS 25.0%
!!! ATTGAATGTTGGTTTGAAAA+AGG - chr6.3:38486992-38487011 MS.gene80452:CDS 25.0%
AAAATCTAAAGGAGGATATG+CGG + chr6.3:38487722-38487741 None:intergenic 30.0%
ACATCCAATGCAAAATCTAA+AGG + chr6.3:38487733-38487752 None:intergenic 30.0%
AGAAGAAGTGAATAACAGTA+GGG - chr6.3:38486529-38486548 MS.gene80452:CDS 30.0%
CAAACAATATTCTTGTTCTC+CGG + chr6.3:38486421-38486440 None:intergenic 30.0%
CCATTGCAAATAACATAAGA+TGG + chr6.3:38487855-38487874 None:intergenic 30.0%
GCAATATGAGATTGATGTTA+GGG - chr6.3:38486892-38486911 MS.gene80452:CDS 30.0%
TCATCAGAAATGACATACAT+AGG + chr6.3:38487136-38487155 None:intergenic 30.0%
TGCAATATGAGATTGATGTT+AGG - chr6.3:38486891-38486910 MS.gene80452:CDS 30.0%
TTAGATCTAATGAGACTAGT+TGG - chr6.3:38487497-38487516 MS.gene80452:CDS 30.0%
TTCTCTATGATCATGGTAAT+TGG - chr6.3:38487821-38487840 MS.gene80452:CDS 30.0%
! ACTTTTATATGTGAGTTCAC+CGG - chr6.3:38487553-38487572 MS.gene80452:CDS 30.0%
! CAATTAGTTCTCTATGATCA+TGG - chr6.3:38487814-38487833 MS.gene80452:CDS 30.0%
! CCATCTTATGTTATTTGCAA+TGG - chr6.3:38487852-38487871 MS.gene80452:CDS 30.0%
! GGATATAATGATGATGATCA+AGG - chr6.3:38486785-38486804 MS.gene80452:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG - chr6.3:38487002-38487021 MS.gene80452:CDS 30.0%
! TAATACCTTTTTGTGTCACA+CGG + chr6.3:38487459-38487478 None:intergenic 30.0%
! TAGATCTAATGAGACTAGTT+GGG - chr6.3:38487498-38487517 MS.gene80452:CDS 30.0%
! TGGTTTGAAAAAGGTATATC+TGG - chr6.3:38487001-38487020 MS.gene80452:CDS 30.0%
! TTTATGTTATCTAGGGTTCA+AGG - chr6.3:38487040-38487059 MS.gene80452:CDS 30.0%
!! AGAAACCCACTTTTACTATA+AGG + chr6.3:38487370-38487389 None:intergenic 30.0%
!! ATCCAAATCGACTTTTGAAT+AGG - chr6.3:38487644-38487663 MS.gene80452:CDS 30.0%
AAAATTATCTACTCTGGCCA+TGG - chr6.3:38486812-38486831 MS.gene80452:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr6.3:38486707-38486726 None:intergenic 35.0%
AAATCTAAAGGAGGATATGC+GGG + chr6.3:38487721-38487740 None:intergenic 35.0%
AAATCTATGCAGAAGCTTAG+AGG - chr6.3:38486332-38486351 MS.gene80452:CDS 35.0%
AATCTATGCAGAAGCTTAGA+GGG - chr6.3:38486333-38486352 MS.gene80452:CDS 35.0%
AGAAGTGAAATGTGTGTGAT+TGG - chr6.3:38486668-38486687 MS.gene80452:CDS 35.0%
ATATCACCAATACAAACACC+AGG + chr6.3:38486638-38486657 None:intergenic 35.0%
ATTGATGTTAGGGTTATTCG+AGG - chr6.3:38486902-38486921 MS.gene80452:CDS 35.0%
ATTTGAGTATCTTCCAAAGG+CGG - chr6.3:38487228-38487247 MS.gene80452:CDS 35.0%
CAGAAGAAGTGAATAACAGT+AGG - chr6.3:38486528-38486547 MS.gene80452:CDS 35.0%
CATGCTAGTATGAGTTCAAA+TGG - chr6.3:38486728-38486747 MS.gene80452:CDS 35.0%
GACCTATTCAAAAGTCGATT+TGG + chr6.3:38487649-38487668 None:intergenic 35.0%
GATGGAGAGGAAAAATAAGA+GGG - chr6.3:38487282-38487301 MS.gene80452:CDS 35.0%
GCAATTTGAGTATCTTCCAA+AGG - chr6.3:38487225-38487244 MS.gene80452:CDS 35.0%
GGAAGATACTCAAATTGCAT+GGG + chr6.3:38487223-38487242 None:intergenic 35.0%
GGAGACAAAATTATCTACTC+TGG - chr6.3:38486806-38486825 MS.gene80452:CDS 35.0%
GTGTTGTCATTCATGATCAA+AGG + chr6.3:38487343-38487362 None:intergenic 35.0%
TAAGCATACTTGCTTCCTTA+AGG + chr6.3:38487090-38487109 None:intergenic 35.0%
TCCAATGCAAAATCTAAAGG+AGG + chr6.3:38487730-38487749 None:intergenic 35.0%
TGATGATATTTCCAATGGGA+AGG - chr6.3:38487150-38487169 MS.gene80452:CDS 35.0%
TGATGGAGAGGAAAAATAAG+AGG - chr6.3:38487281-38487300 MS.gene80452:CDS 35.0%
TGGAAGATACTCAAATTGCA+TGG + chr6.3:38487224-38487243 None:intergenic 35.0%
TGGTACTTCTACTACTAGTA+AGG - chr6.3:38486940-38486959 MS.gene80452:CDS 35.0%
TGTTATTCACTTCTTCTGTC+TGG + chr6.3:38486526-38486545 None:intergenic 35.0%
TTATAACAACAACACTCTGG+CGG - chr6.3:38486298-38486317 MS.gene80452:CDS 35.0%
TTTGATTCTATTCGTGTGTC+AGG - chr6.3:38486437-38486456 MS.gene80452:CDS 35.0%
! AGATCTAATGAGACTAGTTG+GGG - chr6.3:38487499-38487518 MS.gene80452:CDS 35.0%
! CTTTTATATGTGAGTTCACC+GGG - chr6.3:38487554-38487573 MS.gene80452:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG - chr6.3:38487007-38487026 MS.gene80452:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG + chr6.3:38487795-38487814 None:intergenic 35.0%
! TCCTCCTTTAGATTTTGCAT+TGG - chr6.3:38487726-38487745 MS.gene80452:CDS 35.0%
! TGAACAAACACATTTGGAGT+TGG + chr6.3:38487796-38487815 None:intergenic 35.0%
! TTAGGGTTATTCGAGGTTTT+CGG - chr6.3:38486909-38486928 MS.gene80452:CDS 35.0%
!! ATGTGTGTGATTGGTTTACA+CGG - chr6.3:38486677-38486696 MS.gene80452:CDS 35.0%
AAAATCATTGGTCCAGTTCC+TGG - chr6.3:38486617-38486636 MS.gene80452:CDS 40.0%
AATAGGTCCACTCAAGAATG+GGG - chr6.3:38487661-38487680 MS.gene80452:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG + chr6.3:38486758-38486777 None:intergenic 40.0%
AGAAACCGTGTGACACAAAA+AGG - chr6.3:38487451-38487470 MS.gene80452:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG + chr6.3:38487614-38487633 None:intergenic 40.0%
AGGATCATACTACCCATCTT+AGG + chr6.3:38487070-38487089 None:intergenic 40.0%
CAGCAGCTATCAAGTCATTT+CGG + chr6.3:38486556-38486575 None:intergenic 40.0%
CATTGGATGTATCAACGATG+AGG - chr6.3:38487743-38487762 MS.gene80452:CDS 40.0%
GAAGCAAGTATGCTTAAGAG+AGG - chr6.3:38487094-38487113 MS.gene80452:CDS 40.0%
GAATAGGTCCACTCAAGAAT+GGG - chr6.3:38487660-38487679 MS.gene80452:CDS 40.0%
GATGGGTAGTATGATCCTTA+AGG - chr6.3:38487072-38487091 MS.gene80452:CDS 40.0%
GTTCAAGGTCAACCTAAGAT+GGG - chr6.3:38487055-38487074 MS.gene80452:CDS 40.0%
TATAACAACAACACTCTGGC+GGG - chr6.3:38486299-38486318 MS.gene80452:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG + chr6.3:38487889-38487908 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+CGG - chr6.3:38487160-38487179 MS.gene80452:CDS 40.0%
TGAATAGGTCCACTCAAGAA+TGG - chr6.3:38487659-38487678 MS.gene80452:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG + chr6.3:38487427-38487446 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG + chr6.3:38487776-38487795 None:intergenic 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG - chr6.3:38486917-38486936 MS.gene80452:CDS 40.0%
! GAGGAAAAATAAGAGGGTGT+TGG - chr6.3:38487288-38487307 MS.gene80452:CDS 40.0%
! GCTGCTTTGATGAATGATCA+TGG - chr6.3:38486572-38486591 MS.gene80452:CDS 40.0%
!! AATTTTGGAAAAGCCGCCTT+TGG + chr6.3:38487244-38487263 None:intergenic 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG - chr6.3:38487892-38487911 MS.gene80452:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG - chr6.3:38487894-38487913 MS.gene80452:CDS 40.0%
!! CTCTGAGGAAGCAAGAATTT+TGG + chr6.3:38487259-38487278 None:intergenic 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG - chr6.3:38487893-38487912 MS.gene80452:CDS 40.0%
!! GCAAGCGGAAATTTTAACCA+TGG - chr6.3:38487594-38487613 MS.gene80452:CDS 40.0%
!! GCGGAAATTTTAACCATGGA+TGG - chr6.3:38487598-38487617 MS.gene80452:CDS 40.0%
!! GTGGGTTTCTTTTAAAAGGG+AGG - chr6.3:38487380-38487399 MS.gene80452:CDS 40.0%
!!! TCTTTGGACCCTATTTTAGC+TGG - chr6.3:38487529-38487548 MS.gene80452:CDS 40.0%
ACCGATATTCTCCTTCCCAT+TGG + chr6.3:38487164-38487183 None:intergenic 45.0%
ACTAGTGTGGTTGTGTCTGA+TGG - chr6.3:38486764-38486783 MS.gene80452:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG + chr6.3:38487886-38487905 None:intergenic 45.0%
CAAATCACCCCATTCTTGAG+TGG + chr6.3:38487671-38487690 None:intergenic 45.0%
CACAACCACACTAGTAGCAA+TGG + chr6.3:38486759-38486778 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG + chr6.3:38486632-38486651 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG - chr6.3:38486629-38486648 MS.gene80452:CDS 45.0%
GAAGCTTAGAGGGCAAAACA+AGG - chr6.3:38486343-38486362 MS.gene80452:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG + chr6.3:38487885-38487904 None:intergenic 45.0%
GATCATGGGGTAGAATTGAC+TGG - chr6.3:38487907-38487926 MS.gene80452:CDS 45.0%
GCATACTTGTCACCATAGCA+AGG + chr6.3:38486874-38486893 None:intergenic 45.0%
GGTTCAAGGTCAACCTAAGA+TGG - chr6.3:38487054-38487073 MS.gene80452:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG - chr6.3:38487513-38487532 MS.gene80452:CDS 45.0%
TATTCGTGTGTCAGGTTTGC+TGG - chr6.3:38486445-38486464 MS.gene80452:CDS 45.0%
! ATGAGACTAGTTGGGGAGTT+AGG - chr6.3:38487506-38487525 MS.gene80452:CDS 45.0%
! GAGTGTTGTGAATGCGTTGA+TGG - chr6.3:38487310-38487329 MS.gene80452:CDS 45.0%
! TTTTGTAACTCGTCGGGAAC+TGG + chr6.3:38486278-38486297 None:intergenic 45.0%
!!! TGTTTTGACTAGGGAGCAAG+CGG - chr6.3:38487579-38487598 MS.gene80452:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG + chr6.3:38487442-38487461 None:intergenic 50.0%
CCACACTAGTAGCAATGGGT+AGG + chr6.3:38486754-38486773 None:intergenic 50.0%
CCTACCCATTGCTACTAGTG+TGG - chr6.3:38486751-38486770 MS.gene80452:CDS 50.0%
CTCCCTAGTCAAAACAAGCC+CGG + chr6.3:38487575-38487594 None:intergenic 50.0%
CTTGCTTCCTCAGAGCATGA+TGG - chr6.3:38487264-38487283 MS.gene80452:CDS 50.0%
TACACGGTCAACCACAAGCT+GGG - chr6.3:38486693-38486712 MS.gene80452:CDS 50.0%
TGTGAAGCAGGACCAGAAGT+TGG - chr6.3:38486838-38486857 MS.gene80452:CDS 50.0%
TTACACGGTCAACCACAAGC+TGG - chr6.3:38486692-38486711 MS.gene80452:CDS 50.0%
TTCCTCTCCATCATGCTCTG+AGG + chr6.3:38487274-38487293 None:intergenic 50.0%
! CGAGGTTTTCGGTATGAAGG+TGG - chr6.3:38486920-38486939 MS.gene80452:CDS 50.0%
! TTCCTCAGAGCATGATGGAG+AGG - chr6.3:38487269-38487288 MS.gene80452:CDS 50.0%
!!! CACCGGGCTTGTTTTGACTA+GGG - chr6.3:38487570-38487589 MS.gene80452:CDS 50.0%
!!! TCACCGGGCTTGTTTTGACT+AGG - chr6.3:38487569-38487588 MS.gene80452:CDS 50.0%
CAGGACCAGAAGTTGGAACG+AGG - chr6.3:38486845-38486864 MS.gene80452:CDS 55.0%
CTCCGGACCATCTCACGATA+CGG + chr6.3:38486404-38486423 None:intergenic 55.0%
GGAACGAGGCAACCTTGCTA+TGG - chr6.3:38486859-38486878 MS.gene80452:CDS 55.0%
GGACCATCTCACGATACGGA+CGG + chr6.3:38486400-38486419 None:intergenic 55.0%
GGTCCTGCTTCACATCACCA+TGG + chr6.3:38486832-38486851 None:intergenic 55.0%
GGTTGCCTCGTTCCAACTTC+TGG + chr6.3:38486853-38486872 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG - chr6.3:38486399-38486418 MS.gene80452:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG - chr6.3:38486394-38486413 MS.gene80452:CDS 55.0%
! TGGCCATGGTGATGTGAAGC+AGG - chr6.3:38486826-38486845 MS.gene80452:CDS 55.0%
ACGATGGCGCGCGATATGGA+AGG + chr6.3:38486254-38486273 None:intergenic 60.0%
CGATGGCGCGCGATATGGAA+GGG + chr6.3:38486253-38486272 None:intergenic 60.0%
CTCGTCGGGAACTGGAACGA+TGG + chr6.3:38486270-38486289 None:intergenic 60.0%
TGGAACGATGGCGCGCGATA+TGG + chr6.3:38486258-38486277 None:intergenic 60.0%
! GGAGCTTGTTCGCACTGCGA+TGG - chr6.3:38486364-38486383 MS.gene80452:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 38486230 38487942 38486230 ID=MS.gene80452
chr6.3 mRNA 38486230 38487942 38486230 ID=MS.gene80452.t1;Parent=MS.gene80452
chr6.3 exon 38486230 38487942 38486230 ID=MS.gene80452.t1.exon1;Parent=MS.gene80452.t1
chr6.3 CDS 38486230 38487942 38486230 ID=cds.MS.gene80452.t1;Parent=MS.gene80452.t1
Gene Sequence

>MS.gene80452

ATGTATTTTCAAAATTCAAACCCTTCCATATCGCGCGCCATCGTTCCAGTTCCCGACGAGTTACAAAATTATAACAACAACACTCTGGCGGGAAAAGCTTCAAAATCTATGCAGAAGCTTAGAGGGCAAAACAAGGAGCTTGTTCGCACTGCGATGGATGCAGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATATTGTTTGATTCTATTCGTGTGTCAGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAGGTATTTGAAAGCTTATTCTTTGTTGAACCAGACAGAAGAAGTGAATAACAGTAGGGTCCGAAATGACTTGATAGCTGCTGCTTTGATGAATGATCATGGTATGTATTTGTATCTTGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACACGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCAAATGGCCTACCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACAAAATTATCTACTCTGGCCATGGTGATGTGAAGCAGGACCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCTAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCAAGTATGCTTAAGAGAGGCCAATTATGTTCTAATCCTATGTATGTCATTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGTGTGAGACTATATAATGACATTGACAGTGATCGCTATCCCATGCAATTTGAGTATCTTCCAAAGGCGGCTTTTCCAAAATTCTTGCTTCCTCAGAGCATGATGGAGAGGAAAAATAAGAGGGTGTTGGAGTGTTGTGAATGCGTTGATGGATGTTTTCCTTTGATCATGAATGACAACACTTTACCTTATAGTAAAAGTGGGTTTCTTTTAAAAGGGAGGTCATTAATTTATGAATGTGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAGACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTTTAGCTGGAACTTTTATATGTGAGTTCACCGGGCTTGTTTTGACTAGGGAGCAAGCGGAAATTTTAACCATGGATGGTGAACATAACTCTTCGATGATATATCCAAATCGACTTTTGAATAGGTCCACTCAAGAATGGGGTGATTTGTCGATGATAGATGCTAATCATGTGCATCCCGCATATCCTCCTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTATGATCATGGTAATTGGATGTTTCCCCATCTTATGTTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAATTGACTGGAAAGCTCTTGTAA
Protein sequence

>MS.gene80452.t1

MYFQNSNPSISRAIVPVPDELQNYNNNTLAGKASKSMQKLRGQNKELVRTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKRYLKAYSLLNQTEEVNNSRVRNDLIAAALMNDHGMYLYLDKKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGLPIATSVVVSDGYNDDDQGDKIIYSGHGDVKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCSNPMYVISDDISNGKENIGVRLYNDIDSDRYPMQFEYLPKAAFPKFLLPQSMMERKNKRVLECCECVDGCFPLIMNDNTLPYSKSGFLLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSSMIYPNRLLNRSTQEWGDLSMIDANHVHPAYPPLDFALDVSTMRNVASYISHSPTPNVFVQLVLYDHGNWMFPHLMLFAMENIPPMRELSLDHGVELTGKLL