Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80467.t1 | KEH26068.1 | 86.5 | 230 | 30 | 1 | 1 | 229 | 1 | 230 | 7.10E-107 | 396.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80467.t1 | Q8S9H7 | 45.0 | 60 | 33 | 0 | 93 | 152 | 119 | 178 | 6.9e-10 | 65.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80467.t1 | A0A072UAF3 | 86.5 | 230 | 30 | 1 | 1 | 229 | 1 | 230 | 5.1e-107 | 396.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene80467.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80467.t1 | MTR_6g043490 | 88.696 | 230 | 25 | 1 | 1 | 229 | 1 | 230 | 2.88e-129 | 364 |
MS.gene80467.t1 | MTR_6g043480 | 84.348 | 230 | 35 | 1 | 1 | 229 | 1 | 230 | 2.03e-123 | 349 |
MS.gene80467.t1 | MTR_8g072990 | 65.863 | 249 | 56 | 7 | 1 | 228 | 1 | 241 | 1.09e-97 | 285 |
MS.gene80467.t1 | MTR_8g073050 | 55.983 | 234 | 88 | 9 | 1 | 229 | 1 | 224 | 6.61e-64 | 198 |
MS.gene80467.t1 | MTR_5g027570 | 40.260 | 77 | 43 | 1 | 103 | 179 | 89 | 162 | 8.83e-13 | 65.9 |
MS.gene80467.t1 | MTR_4g111975 | 37.037 | 81 | 42 | 2 | 103 | 178 | 135 | 211 | 2.74e-12 | 65.1 |
MS.gene80467.t1 | MTR_5g081860 | 38.272 | 81 | 45 | 2 | 103 | 183 | 122 | 197 | 4.44e-12 | 64.3 |
MS.gene80467.t1 | MTR_3g462790 | 48.000 | 50 | 26 | 0 | 103 | 152 | 144 | 193 | 5.88e-12 | 64.3 |
MS.gene80467.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 107 | 159 | 13 | 65 | 6.57e-12 | 60.1 |
MS.gene80467.t1 | MTR_5g069710 | 48.000 | 50 | 26 | 0 | 103 | 152 | 129 | 178 | 6.58e-12 | 64.3 |
MS.gene80467.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 108 | 190 | 94 | 193 | 1.07e-11 | 63.2 |
MS.gene80467.t1 | MTR_2g100930 | 34.483 | 87 | 50 | 2 | 103 | 189 | 106 | 185 | 1.35e-11 | 63.5 |
MS.gene80467.t1 | MTR_7g067080 | 43.103 | 58 | 33 | 0 | 95 | 152 | 129 | 186 | 1.51e-11 | 63.2 |
MS.gene80467.t1 | MTR_8g101650 | 36.486 | 74 | 42 | 1 | 99 | 172 | 98 | 166 | 1.98e-11 | 62.4 |
MS.gene80467.t1 | MTR_1g111830 | 37.662 | 77 | 46 | 1 | 100 | 176 | 118 | 192 | 4.42e-11 | 61.2 |
MS.gene80467.t1 | MTR_5g088010 | 33.824 | 68 | 45 | 0 | 101 | 168 | 55 | 122 | 5.42e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80467.t1 | AT5G58900 | 50.000 | 50 | 25 | 0 | 103 | 152 | 138 | 187 | 1.75e-12 | 65.9 |
MS.gene80467.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.91e-12 | 65.5 |
MS.gene80467.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.91e-12 | 65.5 |
MS.gene80467.t1 | AT1G49010 | 33.696 | 92 | 50 | 2 | 103 | 194 | 131 | 211 | 3.94e-12 | 64.7 |
MS.gene80467.t1 | AT2G38090 | 37.500 | 80 | 46 | 1 | 92 | 171 | 127 | 202 | 5.22e-12 | 64.3 |
MS.gene80467.t1 | AT5G01200 | 46.575 | 73 | 33 | 3 | 97 | 167 | 136 | 204 | 6.98e-12 | 63.9 |
MS.gene80467.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 8.61e-12 | 63.5 |
MS.gene80467.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 8.61e-12 | 63.5 |
MS.gene80467.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 103 | 155 | 115 | 167 | 1.41e-11 | 63.2 |
MS.gene80467.t1 | AT3G16350 | 40.625 | 64 | 38 | 0 | 89 | 152 | 120 | 183 | 3.16e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGAAACATGGTCAAAATT+AGG | 0.177575 | 6.3:-38228859 | None:intergenic |
CCATAAAATGTTGGAACTTC+TGG | 0.189882 | 6.3:-38229982 | None:intergenic |
ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.3:+38229896 | MS.gene80467:CDS |
ACCACCATGTGTGGTAGGTT+GGG | 0.275905 | 6.3:-38228995 | None:intergenic |
TGGACATGGTGGTGAAGATT+AGG | 0.319556 | 6.3:-38228886 | None:intergenic |
AGTTGATGTGGAACTTCGTT+TGG | 0.325448 | 6.3:+38230083 | MS.gene80467:CDS |
TTAAGTATGGAAAAGGTAAA+TGG | 0.336087 | 6.3:+38229788 | MS.gene80467:CDS |
TAGAAACATGGTCAAAATTA+GGG | 0.358281 | 6.3:-38228858 | None:intergenic |
CTGTCTTAGCTTATTTGTGA+TGG | 0.386082 | 6.3:+38229759 | MS.gene80467:intron |
TGTCTTAGCTTATTTGTGAT+GGG | 0.388102 | 6.3:+38229760 | MS.gene80467:intron |
CGGACACCAAACTACTTTGT+TGG | 0.394254 | 6.3:+38228915 | MS.gene80467:CDS |
GTGATGGGGATGATTAAGTA+TGG | 0.397169 | 6.3:+38229775 | MS.gene80467:CDS |
GTCGGAGAACCCTTGCAATT+AGG | 0.416172 | 6.3:-38229020 | None:intergenic |
CATGGTGCCTTGGAGTCAAT+TGG | 0.422876 | 6.3:+38229089 | MS.gene80467:CDS |
TGTGGTAGGTTGGGGCCAAT+TGG | 0.422957 | 6.3:-38228986 | None:intergenic |
GCTATGCTACTAGCTTCTTC+AGG | 0.423580 | 6.3:+38229863 | MS.gene80467:CDS |
ACCATGCGCCTAGATGCATT+TGG | 0.430946 | 6.3:-38229072 | None:intergenic |
GTAAGATCAGTGATCTCAAT+AGG | 0.430973 | 6.3:-38228781 | None:intergenic |
TACCACCATGTGTGGTAGGT+TGG | 0.433974 | 6.3:-38228996 | None:intergenic |
GTTGATGTGGAACTTCGTTT+GGG | 0.434485 | 6.3:+38230084 | MS.gene80467:CDS |
TGGGTGTGTCCTTGAGCTGT+TGG | 0.438020 | 6.3:-38228943 | None:intergenic |
TGACTCTTCCTGTTCGTGAT+GGG | 0.444123 | 6.3:+38230058 | MS.gene80467:CDS |
CCATGCGCCTAGATGCATTT+GGG | 0.445348 | 6.3:-38229071 | None:intergenic |
ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.3:+38229902 | MS.gene80467:CDS |
CCACCATGTGTGGTAGGTTG+GGG | 0.457806 | 6.3:-38228994 | None:intergenic |
ATGACTCTTCCTGTTCGTGA+TGG | 0.467126 | 6.3:+38230057 | MS.gene80467:CDS |
TAGTTTGGTGTCCGTGGAGT+TGG | 0.473185 | 6.3:-38228906 | None:intergenic |
AGGGTTCTCCGACCGTTACC+TGG | 0.477357 | 6.3:+38229030 | MS.gene80467:CDS |
GTGGTGCCAACAAAGTAGTT+TGG | 0.480218 | 6.3:-38228921 | None:intergenic |
TGGTCAAAATTAGGGATCAT+TGG | 0.484624 | 6.3:-38228850 | None:intergenic |
CATCTAGGCGCATGGTGCCT+TGG | 0.485387 | 6.3:+38229079 | MS.gene80467:CDS |
TCAACTTCCCCATCACGAAC+AGG | 0.492882 | 6.3:-38230066 | None:intergenic |
AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.3:-38229892 | None:intergenic |
CAGTGATTCGAAAGGACTCA+TGG | 0.501395 | 6.3:-38228963 | None:intergenic |
CCTTTCGAATCACTGCCAAT+TGG | 0.501751 | 6.3:+38228971 | MS.gene80467:CDS |
ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.3:+38229908 | MS.gene80467:CDS |
CGCCTAGATGCATTTGGGAA+TGG | 0.509101 | 6.3:-38229066 | None:intergenic |
GGGATGATTAAGTATGGAAA+AGG | 0.512581 | 6.3:+38229781 | MS.gene80467:CDS |
GCATAGCTTTGAACTTGTTG+TGG | 0.515534 | 6.3:-38229847 | None:intergenic |
TGCCATTCCCAAATGCATCT+AGG | 0.516055 | 6.3:+38229064 | MS.gene80467:CDS |
GTCTTAGCTTATTTGTGATG+GGG | 0.518234 | 6.3:+38229761 | MS.gene80467:intron |
GATGAAGATATGTGTGGTGA+TGG | 0.524416 | 6.3:-38228820 | None:intergenic |
AATGGCATGGTGTCTGATCC+AGG | 0.529965 | 6.3:-38229048 | None:intergenic |
GACTCTTCCTGTTCGTGATG+GGG | 0.532231 | 6.3:+38230059 | MS.gene80467:CDS |
GGTGTCCGTGGAGTTGGACA+TGG | 0.533444 | 6.3:-38228900 | None:intergenic |
AGTGCTTGCATCATAGTTGT+TGG | 0.542629 | 6.3:-38230031 | None:intergenic |
GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.3:-38229991 | None:intergenic |
TTGGCACCACCAACAGCTCA+AGG | 0.554738 | 6.3:+38228934 | MS.gene80467:CDS |
GTGTGTCCTTGAGCTGTTGG+TGG | 0.563165 | 6.3:-38228940 | None:intergenic |
AAGATATGTGTGGTGATGGA+GGG | 0.566805 | 6.3:-38228816 | None:intergenic |
ACAAAGTAGTTTGGTGTCCG+TGG | 0.571688 | 6.3:-38228912 | None:intergenic |
CCCAAATGCATCTAGGCGCA+TGG | 0.572869 | 6.3:+38229071 | MS.gene80467:CDS |
GAAGATATGTGTGGTGATGG+AGG | 0.578211 | 6.3:-38228817 | None:intergenic |
TGTTAACAATGATCTTGCAA+AGG | 0.578401 | 6.3:+38229942 | MS.gene80467:CDS |
AGGCTACCACCATGTGTGGT+AGG | 0.580621 | 6.3:-38229000 | None:intergenic |
GTGGTGATGGAGGGGAGTCA+AGG | 0.585853 | 6.3:-38228807 | None:intergenic |
ATGGTGGTAGCCTAATTGCA+AGG | 0.586684 | 6.3:+38229010 | MS.gene80467:CDS |
TCATGATCCAATTGACTCCA+AGG | 0.595729 | 6.3:-38229096 | None:intergenic |
ATCACGAACAGGAAGAGTCA+TGG | 0.604092 | 6.3:-38230055 | None:intergenic |
TGGCCCCAACCTACCACACA+TGG | 0.605392 | 6.3:+38228991 | MS.gene80467:CDS |
CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.3:-38229888 | None:intergenic |
AGATATGTGTGGTGATGGAG+GGG | 0.610906 | 6.3:-38228815 | None:intergenic |
CACCACCATGTCCAACTCCA+CGG | 0.614682 | 6.3:+38228895 | MS.gene80467:CDS |
ATGGTGTCTGATCCAGGTAA+CGG | 0.615417 | 6.3:-38229042 | None:intergenic |
AGTGATTCGAAAGGACTCAT+GGG | 0.623065 | 6.3:-38228962 | None:intergenic |
TGGTGGTAGCCTAATTGCAA+GGG | 0.636313 | 6.3:+38229011 | MS.gene80467:CDS |
TCGTGATGGGGAAGTTGATG+TGG | 0.643669 | 6.3:+38230071 | MS.gene80467:CDS |
CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.3:+38229889 | MS.gene80467:CDS |
CCAATTGGCAGTGATTCGAA+AGG | 0.649536 | 6.3:-38228971 | None:intergenic |
GTCCGTGGAGTTGGACATGG+TGG | 0.658224 | 6.3:-38228897 | None:intergenic |
TGTCTGATCCAGGTAACGGT+CGG | 0.658940 | 6.3:-38229038 | None:intergenic |
AATTAGGCTACCACCATGTG+TGG | 0.664326 | 6.3:-38229004 | None:intergenic |
AGATGCATTTGGGAATGGCA+TGG | 0.666400 | 6.3:-38229061 | None:intergenic |
GATTAGGATTGATAGAAACA+TGG | 0.682877 | 6.3:-38228870 | None:intergenic |
CCCCAACCTACCACACATGG+TGG | 0.700133 | 6.3:+38228994 | MS.gene80467:CDS |
GCATTAGATGAAGATATGTG+TGG | 0.745900 | 6.3:-38228826 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAAAAAAAATAGATTTA+AGG | - | chr6.3:38229139-38229158 | None:intergenic | 10.0% |
!!! | TTTGAATAATAAATTTTAAG+GGG | - | chr6.3:38229657-38229676 | None:intergenic | 10.0% |
!! | ATTAGAGAAAGAAAAAAATT+GGG | - | chr6.3:38229254-38229273 | None:intergenic | 15.0% |
!! | TATTAGAGAAAGAAAAAAAT+TGG | - | chr6.3:38229255-38229274 | None:intergenic | 15.0% |
!!! | TTTTATTTGATAATCTATGA+AGG | - | chr6.3:38229581-38229600 | None:intergenic | 15.0% |
!! | TTAGAGAAAGAAAAAAATTG+GGG | - | chr6.3:38229253-38229272 | None:intergenic | 20.0% |
! | AGAAAAACTTGAAATAGAGA+TGG | + | chr6.3:38229398-38229417 | MS.gene80467:intron | 25.0% |
! | ATAGAAACATGGTCAAAATT+AGG | - | chr6.3:38228862-38228881 | None:intergenic | 25.0% |
! | TAGAAACATGGTCAAAATTA+GGG | - | chr6.3:38228861-38228880 | None:intergenic | 25.0% |
! | TTAAGTATGGAAAAGGTAAA+TGG | + | chr6.3:38229788-38229807 | MS.gene80467:CDS | 25.0% |
! | TTGAAATAATGGCCAATAAA+AGG | - | chr6.3:38229329-38229348 | None:intergenic | 25.0% |
ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.3:38229908-38229927 | MS.gene80467:CDS | 30.0% | |
GATTAGGATTGATAGAAACA+TGG | - | chr6.3:38228873-38228892 | None:intergenic | 30.0% | |
TGTCTTAGCTTATTTGTGAT+GGG | + | chr6.3:38229760-38229779 | MS.gene80467:intron | 30.0% | |
TGTTAACAATGATCTTGCAA+AGG | + | chr6.3:38229942-38229961 | MS.gene80467:CDS | 30.0% | |
! | CTCATTTCTACTCCTTTTAT+TGG | + | chr6.3:38229314-38229333 | MS.gene80467:intron | 30.0% |
! | TGCCAGAGAATTTGAAATAA+TGG | - | chr6.3:38229340-38229359 | None:intergenic | 30.0% |
ACACATATGTGCATGGTTTA+AGG | + | chr6.3:38229896-38229915 | MS.gene80467:CDS | 35.0% | |
ACCACACTCACAATTTATCA+TGG | + | chr6.3:38229704-38229723 | MS.gene80467:intron | 35.0% | |
ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.3:38229902-38229921 | MS.gene80467:CDS | 35.0% | |
CCATAAAATGTTGGAACTTC+TGG | - | chr6.3:38229985-38230004 | None:intergenic | 35.0% | |
CTGTCTTAGCTTATTTGTGA+TGG | + | chr6.3:38229759-38229778 | MS.gene80467:intron | 35.0% | |
GCATTAGATGAAGATATGTG+TGG | - | chr6.3:38228829-38228848 | None:intergenic | 35.0% | |
GGCCATTATTTCAAATTCTC+TGG | + | chr6.3:38229335-38229354 | MS.gene80467:intron | 35.0% | |
GGGATGATTAAGTATGGAAA+AGG | + | chr6.3:38229781-38229800 | MS.gene80467:CDS | 35.0% | |
GTAAGATCAGTGATCTCAAT+AGG | - | chr6.3:38228784-38228803 | None:intergenic | 35.0% | |
GTCTTAGCTTATTTGTGATG+GGG | + | chr6.3:38229761-38229780 | MS.gene80467:intron | 35.0% | |
TCCATGATAAATTGTGAGTG+TGG | - | chr6.3:38229708-38229727 | None:intergenic | 35.0% | |
TGGTCAAAATTAGGGATCAT+TGG | - | chr6.3:38228853-38228872 | None:intergenic | 35.0% | |
! | CCAGAAGTTCCAACATTTTA+TGG | + | chr6.3:38229982-38230001 | MS.gene80467:CDS | 35.0% |
! | GAAGTTCCAACATTTTATGG+AGG | + | chr6.3:38229985-38230004 | MS.gene80467:CDS | 35.0% |
AAACCATGCACATATGTGTC+TGG | - | chr6.3:38229895-38229914 | None:intergenic | 40.0% | |
AGTGATTCGAAAGGACTCAT+GGG | - | chr6.3:38228965-38228984 | None:intergenic | 40.0% | |
AGTGCTTGCATCATAGTTGT+TGG | - | chr6.3:38230034-38230053 | None:intergenic | 40.0% | |
GATGAAGATATGTGTGGTGA+TGG | - | chr6.3:38228823-38228842 | None:intergenic | 40.0% | |
GCTTCTCCTCCATAAAATGT+TGG | - | chr6.3:38229994-38230013 | None:intergenic | 40.0% | |
GTTGATGTGGAACTTCGTTT+GGG | + | chr6.3:38230084-38230103 | MS.gene80467:CDS | 40.0% | |
! | AGTTGATGTGGAACTTCGTT+TGG | + | chr6.3:38230083-38230102 | MS.gene80467:CDS | 40.0% |
! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.3:38229775-38229794 | MS.gene80467:CDS | 40.0% |
! | TCATGATCCAATTGACTCCA+AGG | - | chr6.3:38229099-38229118 | None:intergenic | 40.0% |
!! | AAGATATGTGTGGTGATGGA+GGG | - | chr6.3:38228819-38228838 | None:intergenic | 40.0% |
!! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.3:38229850-38229869 | None:intergenic | 40.0% |
AATTAGGCTACCACCATGTG+TGG | - | chr6.3:38229007-38229026 | None:intergenic | 45.0% | |
AGATGCATTTGGGAATGGCA+TGG | - | chr6.3:38229064-38229083 | None:intergenic | 45.0% | |
ATCACGAACAGGAAGAGTCA+TGG | - | chr6.3:38230058-38230077 | None:intergenic | 45.0% | |
ATGACTCTTCCTGTTCGTGA+TGG | + | chr6.3:38230057-38230076 | MS.gene80467:CDS | 45.0% | |
ATGGTGGTAGCCTAATTGCA+AGG | + | chr6.3:38229010-38229029 | MS.gene80467:CDS | 45.0% | |
ATGGTGTCTGATCCAGGTAA+CGG | - | chr6.3:38229045-38229064 | None:intergenic | 45.0% | |
CAGTGATTCGAAAGGACTCA+TGG | - | chr6.3:38228966-38228985 | None:intergenic | 45.0% | |
CATGCACATATGTGTCTGGT+AGG | - | chr6.3:38229891-38229910 | None:intergenic | 45.0% | |
CCAATTGGCAGTGATTCGAA+AGG | - | chr6.3:38228974-38228993 | None:intergenic | 45.0% | |
CCTTTCGAATCACTGCCAAT+TGG | + | chr6.3:38228971-38228990 | MS.gene80467:CDS | 45.0% | |
CGGACACCAAACTACTTTGT+TGG | + | chr6.3:38228915-38228934 | MS.gene80467:CDS | 45.0% | |
CTACCAGACACATATGTGCA+TGG | + | chr6.3:38229889-38229908 | MS.gene80467:CDS | 45.0% | |
TGACTCTTCCTGTTCGTGAT+GGG | + | chr6.3:38230058-38230077 | MS.gene80467:CDS | 45.0% | |
TGCCATTCCCAAATGCATCT+AGG | + | chr6.3:38229064-38229083 | MS.gene80467:CDS | 45.0% | |
TGGTGGTAGCCTAATTGCAA+GGG | + | chr6.3:38229011-38229030 | MS.gene80467:CDS | 45.0% | |
! | GCTATGCTACTAGCTTCTTC+AGG | + | chr6.3:38229863-38229882 | MS.gene80467:CDS | 45.0% |
! | GTGGTGCCAACAAAGTAGTT+TGG | - | chr6.3:38228924-38228943 | None:intergenic | 45.0% |
! | TGGACATGGTGGTGAAGATT+AGG | - | chr6.3:38228889-38228908 | None:intergenic | 45.0% |
!! | ACAAAGTAGTTTGGTGTCCG+TGG | - | chr6.3:38228915-38228934 | None:intergenic | 45.0% |
!! | AGATATGTGTGGTGATGGAG+GGG | - | chr6.3:38228818-38228837 | None:intergenic | 45.0% |
!! | GAAGATATGTGTGGTGATGG+AGG | - | chr6.3:38228820-38228839 | None:intergenic | 45.0% |
!!! | AATTTGAATAATAAATTTTA+AGG | - | chr6.3:38229659-38229678 | None:intergenic | 5.0% |
!!! | ATTTGAATAATAAATTTTAA+GGG | - | chr6.3:38229658-38229677 | None:intergenic | 5.0% |
!!! | TAAAAAATTTTGATAAAAAA+AGG | + | chr6.3:38229596-38229615 | MS.gene80467:intron | 5.0% |
AATGGCATGGTGTCTGATCC+AGG | - | chr6.3:38229051-38229070 | None:intergenic | 50.0% | |
ACCACCATGTGTGGTAGGTT+GGG | - | chr6.3:38228998-38229017 | None:intergenic | 50.0% | |
ACCATGCGCCTAGATGCATT+TGG | - | chr6.3:38229075-38229094 | None:intergenic | 50.0% | |
CATGGTGCCTTGGAGTCAAT+TGG | + | chr6.3:38229089-38229108 | MS.gene80467:CDS | 50.0% | |
CCATGCGCCTAGATGCATTT+GGG | - | chr6.3:38229074-38229093 | None:intergenic | 50.0% | |
CGCCTAGATGCATTTGGGAA+TGG | - | chr6.3:38229069-38229088 | None:intergenic | 50.0% | |
GACTCTTCCTGTTCGTGATG+GGG | + | chr6.3:38230059-38230078 | MS.gene80467:CDS | 50.0% | |
GTCGGAGAACCCTTGCAATT+AGG | - | chr6.3:38229023-38229042 | None:intergenic | 50.0% | |
TACCACCATGTGTGGTAGGT+TGG | - | chr6.3:38228999-38229018 | None:intergenic | 50.0% | |
TCAACTTCCCCATCACGAAC+AGG | - | chr6.3:38230069-38230088 | None:intergenic | 50.0% | |
! | TGTCTGATCCAGGTAACGGT+CGG | - | chr6.3:38229041-38229060 | None:intergenic | 50.0% |
!! | TAGTTTGGTGTCCGTGGAGT+TGG | - | chr6.3:38228909-38228928 | None:intergenic | 50.0% |
!! | TCGTGATGGGGAAGTTGATG+TGG | + | chr6.3:38230071-38230090 | MS.gene80467:CDS | 50.0% |
AGGCTACCACCATGTGTGGT+AGG | - | chr6.3:38229003-38229022 | None:intergenic | 55.0% | |
CACCACCATGTCCAACTCCA+CGG | + | chr6.3:38228895-38228914 | MS.gene80467:CDS | 55.0% | |
CCACCATGTGTGGTAGGTTG+GGG | - | chr6.3:38228997-38229016 | None:intergenic | 55.0% | |
CCCAAATGCATCTAGGCGCA+TGG | + | chr6.3:38229071-38229090 | MS.gene80467:CDS | 55.0% | |
GTGTGTCCTTGAGCTGTTGG+TGG | - | chr6.3:38228943-38228962 | None:intergenic | 55.0% | |
TGGGTGTGTCCTTGAGCTGT+TGG | - | chr6.3:38228946-38228965 | None:intergenic | 55.0% | |
TTGGCACCACCAACAGCTCA+AGG | + | chr6.3:38228934-38228953 | MS.gene80467:CDS | 55.0% | |
! | TGTGGTAGGTTGGGGCCAAT+TGG | - | chr6.3:38228989-38229008 | None:intergenic | 55.0% |
AGGGTTCTCCGACCGTTACC+TGG | + | chr6.3:38229030-38229049 | MS.gene80467:CDS | 60.0% | |
CATCTAGGCGCATGGTGCCT+TGG | + | chr6.3:38229079-38229098 | MS.gene80467:CDS | 60.0% | |
CCCCAACCTACCACACATGG+TGG | + | chr6.3:38228994-38229013 | MS.gene80467:CDS | 60.0% | |
GGTGTCCGTGGAGTTGGACA+TGG | - | chr6.3:38228903-38228922 | None:intergenic | 60.0% | |
GTCCGTGGAGTTGGACATGG+TGG | - | chr6.3:38228900-38228919 | None:intergenic | 60.0% | |
TGGCCCCAACCTACCACACA+TGG | + | chr6.3:38228991-38229010 | MS.gene80467:CDS | 60.0% | |
!! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.3:38228810-38228829 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 38228778 | 38230116 | 38228778 | ID=MS.gene80467 |
chr6.3 | mRNA | 38228778 | 38230116 | 38228778 | ID=MS.gene80467.t1;Parent=MS.gene80467 |
chr6.3 | exon | 38228778 | 38229118 | 38228778 | ID=MS.gene80467.t1.exon1;Parent=MS.gene80467.t1 |
chr6.3 | CDS | 38228778 | 38229118 | 38228778 | ID=cds.MS.gene80467.t1;Parent=MS.gene80467.t1 |
chr6.3 | exon | 38229768 | 38230116 | 38229768 | ID=MS.gene80467.t1.exon2;Parent=MS.gene80467.t1 |
chr6.3 | CDS | 38229768 | 38230116 | 38229768 | ID=cds.MS.gene80467.t1;Parent=MS.gene80467.t1 |
Gene Sequence |
Protein sequence |