Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80493.t1 | GAU27354.1 | 36.4 | 297 | 124 | 7 | 10 | 255 | 50 | 332 | 1.10E-36 | 164.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80493.t1 | Q8S8M9 | 74.5 | 55 | 13 | 1 | 273 | 327 | 203 | 256 | 9.5e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80493.t1 | A0A2Z6M4I1 | 36.4 | 297 | 124 | 7 | 10 | 255 | 50 | 332 | 8.0e-37 | 164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80493.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80493.t1 | MTR_0024s0330 | 54.412 | 136 | 58 | 2 | 10 | 145 | 48 | 179 | 4.41e-37 | 141 |
| MS.gene80493.t1 | MTR_6g017265 | 53.488 | 129 | 56 | 2 | 10 | 138 | 57 | 181 | 6.00e-34 | 131 |
| MS.gene80493.t1 | MTR_8g019520 | 79.012 | 81 | 17 | 0 | 247 | 327 | 177 | 257 | 5.84e-31 | 117 |
| MS.gene80493.t1 | MTR_8g019520 | 79.012 | 81 | 17 | 0 | 247 | 327 | 176 | 256 | 6.08e-31 | 117 |
| MS.gene80493.t1 | MTR_2g099500 | 75.862 | 58 | 14 | 0 | 269 | 326 | 193 | 250 | 4.12e-26 | 104 |
| MS.gene80493.t1 | MTR_1g015185 | 76.364 | 55 | 12 | 1 | 273 | 327 | 210 | 263 | 1.07e-23 | 98.2 |
| MS.gene80493.t1 | MTR_2g040990 | 68.333 | 60 | 16 | 2 | 270 | 327 | 195 | 253 | 1.35e-21 | 92.4 |
| MS.gene80493.t1 | MTR_4g134510 | 69.231 | 52 | 16 | 0 | 272 | 323 | 201 | 252 | 5.30e-21 | 90.9 |
| MS.gene80493.t1 | MTR_4g015830 | 69.091 | 55 | 16 | 1 | 273 | 327 | 187 | 240 | 2.47e-20 | 88.6 |
| MS.gene80493.t1 | MTR_7g068590 | 65.455 | 55 | 18 | 1 | 273 | 327 | 189 | 242 | 6.84e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80493.t1 | AT5G38690 | 29.588 | 267 | 163 | 5 | 10 | 255 | 34 | 296 | 4.92e-26 | 108 |
| MS.gene80493.t1 | AT5G38690 | 29.588 | 267 | 163 | 5 | 10 | 255 | 34 | 296 | 4.92e-26 | 108 |
| MS.gene80493.t1 | AT1G67780 | 42.975 | 121 | 56 | 1 | 10 | 117 | 37 | 157 | 7.96e-25 | 105 |
| MS.gene80493.t1 | AT1G67780 | 42.975 | 121 | 56 | 1 | 10 | 117 | 37 | 157 | 7.96e-25 | 105 |
| MS.gene80493.t1 | AT5G20510 | 71.186 | 59 | 16 | 1 | 269 | 327 | 162 | 219 | 4.48e-24 | 98.2 |
| MS.gene80493.t1 | AT5G20510 | 71.186 | 59 | 16 | 1 | 269 | 327 | 203 | 260 | 8.17e-24 | 98.6 |
| MS.gene80493.t1 | AT3G42790 | 74.138 | 58 | 14 | 1 | 269 | 326 | 193 | 249 | 1.44e-23 | 97.8 |
| MS.gene80493.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 273 | 327 | 203 | 256 | 3.41e-23 | 97.1 |
| MS.gene80493.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 273 | 327 | 194 | 247 | 4.17e-23 | 96.3 |
| MS.gene80493.t1 | AT5G26210 | 75.000 | 56 | 13 | 1 | 271 | 326 | 200 | 254 | 1.57e-22 | 95.1 |
| MS.gene80493.t1 | AT1G67270 | 50.000 | 90 | 45 | 0 | 10 | 99 | 29 | 118 | 3.77e-22 | 97.1 |
| MS.gene80493.t1 | AT1G14510 | 68.519 | 54 | 17 | 0 | 273 | 326 | 198 | 251 | 1.88e-21 | 92.0 |
| MS.gene80493.t1 | AT5G05610 | 63.636 | 55 | 20 | 0 | 269 | 323 | 184 | 238 | 7.55e-19 | 84.7 |
| MS.gene80493.t1 | AT5G05610 | 63.636 | 55 | 20 | 0 | 269 | 323 | 184 | 238 | 7.55e-19 | 84.7 |
| MS.gene80493.t1 | AT3G11200 | 62.745 | 51 | 19 | 0 | 269 | 319 | 189 | 239 | 1.42e-17 | 81.3 |
| MS.gene80493.t1 | AT3G11200 | 62.745 | 51 | 19 | 0 | 269 | 319 | 176 | 226 | 1.95e-17 | 80.5 |
Find 73 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6.3:-37226990 | MS.gene80493:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6.3:+37227292 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6.3:-37226970 | MS.gene80493:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6.3:+37226638 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6.3:-37227305 | MS.gene80493:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6.3:-37226955 | MS.gene80493:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6.3:+37226920 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6.3:+37226548 | None:intergenic |
| TACTTGATAATAATGCTATA+AGG | 0.390742 | 6.3:-37226894 | MS.gene80493:CDS |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6.3:-37227049 | MS.gene80493:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6.3:+37227589 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6.3:+37227568 | None:intergenic |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6.3:-37227290 | MS.gene80493:CDS |
| TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6.3:+37226871 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6.3:-37227050 | MS.gene80493:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6.3:-37227289 | MS.gene80493:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6.3:-37227316 | MS.gene80493:CDS |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.3:-37227397 | MS.gene80493:CDS |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6.3:-37226989 | MS.gene80493:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6.3:+37226479 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6.3:-37227427 | MS.gene80493:CDS |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6.3:-37226572 | MS.gene80493:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.3:+37226443 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6.3:-37226556 | MS.gene80493:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.3:-37227362 | MS.gene80493:CDS |
| GTGAGTCAAACCTGTCTAAG+AGG | 0.480314 | 6.3:+37227735 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.482752 | 6.3:-37227825 | MS.gene80493:CDS |
| ACAAAACATTGAAAATGTAC+TGG | 0.484756 | 6.3:-37226827 | MS.gene80493:CDS |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6.3:-37227315 | MS.gene80493:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6.3:-37227045 | MS.gene80493:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6.3:-37226493 | MS.gene80493:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6.3:+37226921 | None:intergenic |
| GAAGAAATTTCTCATCCCTC+TGG | 0.501685 | 6.3:-37226850 | MS.gene80493:CDS |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6.3:-37226935 | MS.gene80493:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6.3:-37227772 | MS.gene80493:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6.3:-37227426 | MS.gene80493:CDS |
| CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6.3:+37227063 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6.3:+37227567 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6.3:+37227064 | None:intergenic |
| CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6.3:-37227064 | MS.gene80493:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6.3:-37226642 | MS.gene80493:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6.3:-37227625 | MS.gene80493:intron |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6.3:-37226529 | MS.gene80493:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6.3:-37226520 | MS.gene80493:CDS |
| GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6.3:-37226872 | MS.gene80493:CDS |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6.3:+37227387 | None:intergenic |
| CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6.3:-37227063 | MS.gene80493:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6.3:-37226492 | MS.gene80493:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6.3:+37227038 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6.3:+37226480 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.3:+37226504 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6.3:+37227003 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6.3:-37226521 | MS.gene80493:CDS |
| GAGGAAGATGAAGATGAAGA+CGG | 0.585144 | 6.3:-37226608 | MS.gene80493:CDS |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6.3:+37226997 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6.3:-37226428 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6.3:+37226960 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.3:-37227404 | MS.gene80493:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.609714 | 6.3:-37227631 | MS.gene80493:intron |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6.3:-37227284 | MS.gene80493:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6.3:-37226985 | MS.gene80493:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6.3:-37227576 | MS.gene80493:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6.3:-37226627 | MS.gene80493:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6.3:-37227425 | MS.gene80493:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.3:+37227415 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.3:-37227055 | MS.gene80493:CDS |
| ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6.3:-37227070 | MS.gene80493:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.3:+37227412 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6.3:+37226549 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6.3:-37226593 | MS.gene80493:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6.3:-37226584 | MS.gene80493:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6.3:-37226648 | MS.gene80493:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6.3:+37226481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6.3:37226434-37226453 | MS.gene80493:CDS | 15.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6.3:37226577-37226596 | MS.gene80493:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6.3:37227292-37227311 | MS.gene80493:CDS | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6.3:37226685-37226704 | MS.gene80493:intron | 20.0% |
| !!! | TAAAACATGCTTTATGATTT+TGG | - | chr6.3:37226765-37226784 | MS.gene80493:CDS | 20.0% |
| !!! | TACTTGATAATAATGCTATA+AGG | - | chr6.3:37227387-37227406 | MS.gene80493:CDS | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6.3:37227522-37227541 | MS.gene80493:intron | 20.0% |
| !!! | TTTTGAATTTTCTCTTAAGT+AGG | - | chr6.3:37227609-37227628 | MS.gene80493:CDS | 20.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6.3:37226992-37227011 | None:intergenic | 25.0% |
| ! | ACAAAACATTGAAAATGTAC+TGG | - | chr6.3:37227454-37227473 | MS.gene80493:intron | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6.3:37226992-37227011 | MS.gene80493:CDS | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6.3:37227324-37227343 | None:intergenic | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6.3:37226965-37226984 | MS.gene80493:CDS | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6.3:37227571-37227590 | None:intergenic | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6.3:37227291-37227310 | MS.gene80493:CDS | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6.3:37226947-37226966 | MS.gene80493:CDS | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6.3:37226991-37227010 | MS.gene80493:CDS | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6.3:37226946-37226965 | MS.gene80493:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6.3:37226966-37226985 | MS.gene80493:CDS | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6.3:37226465-37226484 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6.3:37227569-37227588 | MS.gene80493:CDS | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6.3:37227326-37227345 | MS.gene80493:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6.3:37227063-37227082 | MS.gene80493:CDS | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6.3:37227521-37227540 | MS.gene80493:intron | 25.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6.3:37227296-37227315 | MS.gene80493:CDS | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6.3:37227735-37227754 | None:intergenic | 30.0% | |
| ATGACATCCTTAATACTTGT+TGG | - | chr6.3:37227561-37227580 | MS.gene80493:CDS | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6.3:37226649-37226668 | MS.gene80493:CDS | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6.3:37227034-37227053 | None:intergenic | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6.3:37226650-37226669 | MS.gene80493:CDS | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6.3:37226648-37226667 | MS.gene80493:CDS | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6.3:37227035-37227054 | None:intergenic | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6.3:37226828-37226847 | MS.gene80493:CDS | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6.3:37227363-37227382 | None:intergenic | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6.3:37227287-37227306 | None:intergenic | 30.0% |
| ! | ATTTTCAATGTTTTGTCCAG+AGG | + | chr6.3:37227450-37227469 | None:intergenic | 30.0% |
| ! | ATTTTCTCTTAAGTAGGCTT+TGG | - | chr6.3:37227615-37227634 | MS.gene80493:CDS | 30.0% |
| ! | TTTTCAATGTTTTGTCCAGA+GGG | + | chr6.3:37227449-37227468 | None:intergenic | 30.0% |
| !! | ATGCTTTATGATTTTGGTGT+TGG | - | chr6.3:37226771-37226790 | MS.gene80493:CDS | 30.0% |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6.3:37227169-37227188 | MS.gene80493:intron | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6.3:37227526-37227545 | MS.gene80493:intron | 30.0% |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.3:37226934-37226953 | MS.gene80493:CDS | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6.3:37227736-37227755 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6.3:37226491-37226510 | MS.gene80493:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6.3:37226695-37226714 | None:intergenic | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6.3:37226976-37226995 | MS.gene80493:CDS | 35.0% | |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6.3:37226656-37226675 | MS.gene80493:intron | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | + | chr6.3:37227780-37227799 | None:intergenic | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6.3:37226504-37226523 | None:intergenic | 35.0% |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6.3:37227364-37227383 | None:intergenic | 35.0% |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6.3:37227749-37227768 | MS.gene80493:CDS | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6.3:37226509-37226528 | MS.gene80493:CDS | 35.0% |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6.3:37227172-37227191 | MS.gene80493:intron | 35.0% |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.3:37227841-37227860 | None:intergenic | 35.0% |
| AATATGGCCCTGATGAATTC+TGG | - | chr6.3:37227725-37227744 | MS.gene80493:intron | 40.0% | |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6.3:37227211-37227230 | MS.gene80493:intron | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.3:37226919-37226938 | MS.gene80493:CDS | 40.0% | |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6.3:37227431-37227450 | MS.gene80493:CDS | 40.0% | |
| GAGGAAGATGAAGATGAAGA+CGG | - | chr6.3:37227673-37227692 | MS.gene80493:intron | 40.0% | |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6.3:37226536-37226555 | MS.gene80493:CDS | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.3:37226740-37226759 | MS.gene80493:intron | 40.0% | |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6.3:37227346-37227365 | MS.gene80493:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6.3:37226717-37226736 | None:intergenic | 40.0% | |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6.3:37227413-37227432 | None:intergenic | 40.0% |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6.3:37227281-37227300 | None:intergenic | 40.0% |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.3:37227633-37227652 | MS.gene80493:intron | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6.3:37227000-37227019 | MS.gene80493:CDS | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6.3:37226456-37226475 | MS.gene80493:CDS | 40.0% |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6.3:37226997-37227016 | MS.gene80493:CDS | 40.0% |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6.3:37227246-37227265 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6.3:37226897-37226916 | None:intergenic | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6.3:37227760-37227779 | MS.gene80493:CDS | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6.3:37227218-37227237 | MS.gene80493:intron | 45.0% | |
| CCATTGCCACACAATGAGTT+GGG | + | chr6.3:37227220-37227239 | None:intergenic | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6.3:37227409-37227428 | MS.gene80493:CDS | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6.3:37227654-37227673 | MS.gene80493:intron | 45.0% | |
| GTGAGTCAAACCTGTCTAAG+AGG | + | chr6.3:37226549-37226568 | None:intergenic | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6.3:37227639-37227658 | MS.gene80493:intron | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6.3:37227752-37227771 | MS.gene80493:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6.3:37227646-37227665 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6.3:37226716-37226735 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6.3:37227311-37227330 | MS.gene80493:CDS | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6.3:37227789-37227808 | MS.gene80493:CDS | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6.3:37227761-37227780 | MS.gene80493:CDS | 45.0% | |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6.3:37226872-37226891 | None:intergenic | 50.0% | |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6.3:37227217-37227236 | MS.gene80493:intron | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6.3:37227221-37227240 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6.3:37227804-37227823 | None:intergenic | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6.3:37227688-37227707 | MS.gene80493:intron | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6.3:37227697-37227716 | MS.gene80493:intron | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6.3:37227803-37227822 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6.3:37226877-37226896 | MS.gene80493:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6.3:37227788-37227807 | MS.gene80493:CDS | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6.3:37227805-37227824 | None:intergenic | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.3:37226884-37226903 | MS.gene80493:CDS | 50.0% |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6.3:37226855-37226874 | MS.gene80493:CDS | 50.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6.3:37227709-37227728 | MS.gene80493:intron | 55.0% | |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6.3:37226705-37226724 | MS.gene80493:intron | 55.0% | |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6.3:37226856-37226875 | MS.gene80493:CDS | 55.0% |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6.3:37226854-37226873 | MS.gene80493:CDS | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.3:37227226-37227245 | MS.gene80493:intron | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.3:37227232-37227251 | MS.gene80493:intron | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.3:37227231-37227250 | MS.gene80493:intron | 55.0% |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.3:37226869-37226888 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6.3:37227236-37227255 | MS.gene80493:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37226430 | 37227873 | 37226430 | ID=MS.gene80493 |
| chr6.3 | mRNA | 37226430 | 37227873 | 37226430 | ID=MS.gene80493.t1;Parent=MS.gene80493 |
| chr6.3 | exon | 37227746 | 37227873 | 37227746 | ID=MS.gene80493.t1.exon1;Parent=MS.gene80493.t1 |
| chr6.3 | CDS | 37227746 | 37227873 | 37227746 | ID=cds.MS.gene80493.t1;Parent=MS.gene80493.t1 |
| chr6.3 | exon | 37227552 | 37227638 | 37227552 | ID=MS.gene80493.t1.exon2;Parent=MS.gene80493.t1 |
| chr6.3 | CDS | 37227552 | 37227638 | 37227552 | ID=cds.MS.gene80493.t1;Parent=MS.gene80493.t1 |
| chr6.3 | exon | 37227285 | 37227453 | 37227285 | ID=MS.gene80493.t1.exon3;Parent=MS.gene80493.t1 |
| chr6.3 | CDS | 37227285 | 37227453 | 37227285 | ID=cds.MS.gene80493.t1;Parent=MS.gene80493.t1 |
| chr6.3 | exon | 37226756 | 37227112 | 37226756 | ID=MS.gene80493.t1.exon4;Parent=MS.gene80493.t1 |
| chr6.3 | CDS | 37226756 | 37227112 | 37226756 | ID=cds.MS.gene80493.t1;Parent=MS.gene80493.t1 |
| chr6.3 | exon | 37226430 | 37226672 | 37226430 | ID=MS.gene80493.t1.exon5;Parent=MS.gene80493.t1 |
| chr6.3 | CDS | 37226430 | 37226672 | 37226430 | ID=cds.MS.gene80493.t1;Parent=MS.gene80493.t1 |
| Gene Sequence |
| Protein sequence |
