AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80496.t1 MTR_8g019520 66.949 236 44 2 34 242 16 244 8.02e-92 271
MS.gene80496.t1 MTR_8g019520 66.667 237 44 2 34 242 16 245 1.10e-91 270
MS.gene80496.t1 MTR_1g015185 58.475 236 71 1 34 242 17 252 3.58e-79 239
MS.gene80496.t1 MTR_2g040990 58.850 226 74 3 34 242 19 242 1.35e-78 237
MS.gene80496.t1 MTR_2g099500 57.456 228 78 2 34 242 12 239 4.43e-78 236
MS.gene80496.t1 MTR_4g134510 56.579 228 80 2 34 242 17 244 3.70e-75 228
MS.gene80496.t1 MTR_4g015830 49.776 223 91 3 34 242 14 229 1.90e-62 196
MS.gene80496.t1 MTR_7g068590 46.875 224 98 3 34 242 14 231 6.50e-60 189
MS.gene80496.t1 MTR_1g015185 75.000 132 33 0 34 165 17 148 1.53e-59 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80496.t1 AT5G20510 55.794 233 79 2 34 242 17 249 9.84e-77 233
MS.gene80496.t1 AT3G42790 55.605 223 85 2 34 242 17 239 4.92e-76 231
MS.gene80496.t1 AT1G14510 59.111 225 76 2 34 242 16 240 1.90e-75 229
MS.gene80496.t1 AT2G02470 52.564 234 82 2 34 242 16 245 6.68e-71 218
MS.gene80496.t1 AT2G02470 54.667 225 82 2 34 242 16 236 6.83e-71 217
MS.gene80496.t1 AT5G26210 60.699 229 70 1 34 242 16 244 1.37e-70 217
MS.gene80496.t1 AT5G05610 51.818 220 91 3 34 242 15 230 2.01e-66 206
MS.gene80496.t1 AT5G05610 51.818 220 91 3 34 242 15 230 2.01e-66 206
MS.gene80496.t1 AT3G11200 49.115 226 91 4 34 242 17 235 2.95e-59 187
MS.gene80496.t1 AT5G20510 53.171 205 72 2 62 242 4 208 3.06e-59 187
MS.gene80496.t1 AT5G20510 66.917 133 44 0 33 165 16 148 7.33e-56 177
MS.gene80496.t1 AT3G11200 47.980 198 79 4 62 242 32 222 1.47e-50 165
MS.gene80496.t1 AT2G02470 59.615 156 59 1 33 188 15 166 3.65e-50 165

Find 68 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTTCCCACTGCTCATT+AGG 0.236377 6.3:+37180670 None:intergenic
GGAAGTCAATTTACCTTCTA+AGG 0.242496 6.3:-37180656 MS.gene80496:CDS
CAGAAAATCCAGAATTTATC+AGG 0.245351 6.3:+37179439 None:intergenic
TTGCCATGGCACACTACTTT+GGG 0.283032 6.3:-37180522 MS.gene80496:CDS
AGCATAGGCTCGGGAAGATC+TGG 0.294522 6.3:+37180625 None:intergenic
CTTCACAGCGAATCAATGTT+AGG 0.296552 6.3:-37181046 MS.gene80496:CDS
AGCCACAGACTCTCCTTCTC+TGG 0.311063 6.3:+37180703 None:intergenic
TGACTTCCCACTGCTCATTA+GGG 0.324856 6.3:+37180671 None:intergenic
TCAATATTTGAAGTTGTAAC+TGG 0.363500 6.3:-37180436 MS.gene80496:CDS
GTATCGATCTCCTCGTCTTT+AGG 0.364422 6.3:+37180286 None:intergenic
AGATCTTCCCGAGCCTATGC+TGG 0.365711 6.3:-37180623 MS.gene80496:CDS
GGTTAAGCAGACAAAGGCTT+TGG 0.402644 6.3:-37180314 MS.gene80496:CDS
TGCTGGGATTTAACTTTGAA+AGG 0.416022 6.3:-37180606 MS.gene80496:CDS
ATTGCCATGGCACACTACTT+TGG 0.419300 6.3:-37180523 MS.gene80496:CDS
GTGGATTTGACAAATCTAAC+AGG 0.445968 6.3:-37180492 MS.gene80496:CDS
TCTCCTTCTCTGGGTCAGAT+TGG 0.447533 6.3:+37180713 None:intergenic
TTCACAGCGAATCAATGTTA+GGG 0.452573 6.3:-37181045 MS.gene80496:CDS
GCATAGGCTCGGGAAGATCT+GGG 0.458847 6.3:+37180626 None:intergenic
TCGATATGCTTAACCCTAGC+AGG 0.459889 6.3:+37179370 None:intergenic
ATTCGCTGTGAAGGAAAAGA+AGG 0.468130 6.3:+37181056 None:intergenic
GAGGAAGATGAAGATGAAGA+AGG 0.473888 6.3:-37179499 MS.gene80496:CDS
GAAAGATTGGCTATCCTTAG+TGG 0.476020 6.3:-37180569 MS.gene80496:CDS
ATCGCATGCAAGAGAAAGAT+TGG 0.476387 6.3:-37180582 MS.gene80496:CDS
GCTGGGATTTAACTTTGAAA+GGG 0.477875 6.3:-37180605 MS.gene80496:CDS
GATTTCAATGGTCGTCGCGC+TGG 0.486877 6.3:-37180778 MS.gene80496:CDS
CACAGTACGGCTCACATCCC+TGG 0.487480 6.3:+37180260 None:intergenic
AATATGACCCTGATAAATTC+TGG 0.489252 6.3:-37179447 MS.gene80496:CDS
AAATCTCGTGGAATTCAAGT+TGG 0.492461 6.3:-37181017 MS.gene80496:CDS
TATCATTTATCATATTGAAA+AGG 0.496927 6.3:+37180464 None:intergenic
AAAGGTTTCAGAGATTTCAA+TGG 0.504202 6.3:-37180790 MS.gene80496:intron
GTGTGAATATCACCCCTGCT+AGG 0.514666 6.3:-37179384 MS.gene80496:CDS
CACTACTTTGGGGCAAGATG+TGG 0.517023 6.3:-37180511 MS.gene80496:CDS
ATCACTATGAACAGCCACTA+AGG 0.519268 6.3:+37180555 None:intergenic
CGAGGAGATCGATACAGACC+AGG 0.520903 6.3:-37180278 MS.gene80496:CDS
GTTAAATCCCAGCATAGGCT+CGG 0.523411 6.3:+37180615 None:intergenic
TCTGTGACATTTGTGAGAGA+TGG 0.533709 6.3:-37179420 MS.gene80496:CDS
GTTACAACTTCAAATATTGA+CGG 0.543392 6.3:+37180439 None:intergenic
TCGTCGCGCTGGTCTCATCA+AGG 0.546510 6.3:-37180767 MS.gene80496:CDS
GCCACAGACTCTCCTTCTCT+GGG 0.561677 6.3:+37180704 None:intergenic
TCAAAGTTAAATCCCAGCAT+AGG 0.563679 6.3:+37180610 None:intergenic
GATCTTCCCGAGCCTATGCT+GGG 0.565149 6.3:-37180622 MS.gene80496:CDS
TTAAATCCCAGCATAGGCTC+GGG 0.565590 6.3:+37180616 None:intergenic
CTAACATTGATTCGCTGTGA+AGG 0.570338 6.3:+37181047 None:intergenic
TGTGAATATCACCCCTGCTA+GGG 0.571594 6.3:-37179383 MS.gene80496:CDS
CAGTTTCCCTAATGAGCAGT+GGG 0.573905 6.3:-37180677 MS.gene80496:CDS
TGATATTCACACATTTCCCA+TGG 0.578749 6.3:+37179395 None:intergenic
CATAGGCTCGGGAAGATCTG+GGG 0.581002 6.3:+37180627 None:intergenic
CGATATGCTTAACCCTAGCA+GGG 0.587671 6.3:+37179371 None:intergenic
TTTGTGAGAGATGGTTCCAT+GGG 0.600358 6.3:-37179411 MS.gene80496:CDS
TGCCATGGCACACTACTTTG+GGG 0.603166 6.3:-37180521 MS.gene80496:CDS
ATAGGCTCGGGAAGATCTGG+GGG 0.607426 6.3:+37180628 None:intergenic
ATTTGTGAGAGATGGTTCCA+TGG 0.610050 6.3:-37179412 MS.gene80496:CDS
TCACAGCGAATCAATGTTAG+GGG 0.615098 6.3:-37181044 MS.gene80496:CDS
TGCCCCAAAGTAGTGTGCCA+TGG 0.618279 6.3:+37180519 None:intergenic
TAACCAATCTGACCCAGAGA+AGG 0.618594 6.3:-37180716 MS.gene80496:CDS
GTTAGGGGAAAGAAATCTCG+TGG 0.628011 6.3:-37181029 MS.gene80496:CDS
AGAAAATCCAGAATTTATCA+GGG 0.630317 6.3:+37179440 None:intergenic
TGATGCATGGTTAATTGCCA+TGG 0.631616 6.3:-37180536 MS.gene80496:CDS
ATCTCAGGTTAAGCAGACAA+AGG 0.632729 6.3:-37180320 MS.gene80496:intron
ACCCAGAGAAGGAGAGTCTG+TGG 0.633591 6.3:-37180705 MS.gene80496:CDS
ACAGTTTCCCTAATGAGCAG+TGG 0.634469 6.3:-37180678 MS.gene80496:CDS
ATAGAACTCTTCAACATCAG+TGG 0.635056 6.3:+37180738 None:intergenic
TGGCTGTTCATAGTGATGCA+TGG 0.643140 6.3:-37180549 MS.gene80496:CDS
GAAGAAGGAGAGAACTCATG+TGG 0.669374 6.3:-37179484 MS.gene80496:CDS
TTTGGAGTTACCTAAAGACG+AGG 0.685384 6.3:-37180296 MS.gene80496:CDS
GAGGAGATCGATACAGACCA+GGG 0.695363 6.3:-37180277 MS.gene80496:CDS
GAGAACTCATGTGGTGCATG+CGG 0.697071 6.3:-37179475 MS.gene80496:CDS
GATATGCTTAACCCTAGCAG+GGG 0.713226 6.3:+37179372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGACATAAAACATTAAA+TGG + chr6.3:37180242-37180261 None:intergenic 15.0%
!! TATCATTTATCATATTGAAA+AGG + chr6.3:37179958-37179977 None:intergenic 15.0%
!! AATAATATTCCTTATGCTAT+TGG + chr6.3:37180757-37180776 None:intergenic 20.0%
!! ATAGCATAAGGAATATTATT+AGG - chr6.3:37180757-37180776 MS.gene80496:CDS 20.0%
! AATTTATGTTATAGGACAGA+AGG + chr6.3:37180864-37180883 None:intergenic 25.0%
! AGAAAATCCAGAATTTATCA+GGG + chr6.3:37180982-37181001 None:intergenic 25.0%
! CTTCTTTGATAAAAATCTCA+AGG + chr6.3:37180806-37180825 None:intergenic 25.0%
! GTGGGTATTAAAAAAAAATG+AGG - chr6.3:37180639-37180658 MS.gene80496:CDS 25.0%
! GTTACAACTTCAAATATTGA+CGG + chr6.3:37179983-37180002 None:intergenic 25.0%
! TAAAATATGTGCAATAGAGT+AGG + chr6.3:37179480-37179499 None:intergenic 25.0%
!! CAAAAACCTTTATTTCTTGT+CGG + chr6.3:37179567-37179586 None:intergenic 25.0%
!! TCAATATTTGAAGTTGTAAC+TGG - chr6.3:37179983-37180002 MS.gene80496:intron 25.0%
!!! AAACGTTTTGATTTTATCAC+TGG + chr6.3:37180396-37180415 None:intergenic 25.0%
AAAAGTTCTTCCATATCTGA+TGG + chr6.3:37180899-37180918 None:intergenic 30.0%
AAAGGTTTCAGAGATTTCAA+TGG - chr6.3:37179629-37179648 MS.gene80496:intron 30.0%
AAAGTTCTTCCATATCTGAT+GGG + chr6.3:37180898-37180917 None:intergenic 30.0%
AAGAAATTGAGAGAGAGAAA+AGG + chr6.3:37180835-37180854 None:intergenic 30.0%
AATATGACCCTGATAAATTC+TGG - chr6.3:37180972-37180991 MS.gene80496:intron 30.0%
ACACGCAAAAATCTAAGAAA+AGG - chr6.3:37179592-37179611 MS.gene80496:intron 30.0%
AGAAATTGAGAGAGAGAAAA+GGG + chr6.3:37180834-37180853 None:intergenic 30.0%
ATAAAGTCCTTGAACTTCTT+AGG + chr6.3:37180217-37180236 None:intergenic 30.0%
CACGCAAAAATCTAAGAAAA+GGG - chr6.3:37179593-37179612 MS.gene80496:intron 30.0%
CAGAAAATCCAGAATTTATC+AGG + chr6.3:37180983-37181002 None:intergenic 30.0%
GGGTGTTAAAAAAAATTGGA+AGG - chr6.3:37180605-37180624 MS.gene80496:CDS 30.0%
TCTTTATCTTCAAGCCATAA+TGG - chr6.3:37180034-37180053 MS.gene80496:intron 30.0%
TGATGACTAATATGTCTGTT+AGG - chr6.3:37180318-37180337 MS.gene80496:intron 30.0%
TGCAGAAAAGAAACAAGTAA+AGG - chr6.3:37180006-37180025 MS.gene80496:intron 30.0%
TTAAAAAAAAATGAGGCCCA+TGG - chr6.3:37180646-37180665 MS.gene80496:CDS 30.0%
TTTCTCTCTCTCAATTTCTT+AGG - chr6.3:37180835-37180854 MS.gene80496:intron 30.0%
! AGATATGGAAGAACTTTTTG+AGG - chr6.3:37180901-37180920 MS.gene80496:intron 30.0%
AAAAGGCTAAAACAAGAGGA+CGG - chr6.3:37180571-37180590 MS.gene80496:CDS 35.0%
AAATCTCGTGGAATTCAAGT+TGG - chr6.3:37179402-37179421 MS.gene80496:CDS 35.0%
AAATGACTACCGTATACATG+AGG - chr6.3:37180500-37180519 MS.gene80496:CDS 35.0%
ATAGAACTCTTCAACATCAG+TGG + chr6.3:37179684-37179703 None:intergenic 35.0%
CTACTTCAAATAGGCCTAAA+AGG - chr6.3:37180554-37180573 MS.gene80496:CDS 35.0%
GAGATCAATCCAATAGCATA+AGG - chr6.3:37180745-37180764 MS.gene80496:CDS 35.0%
GGAAGTCAATTTACCTTCTA+AGG - chr6.3:37179763-37179782 MS.gene80496:intron 35.0%
GTGGATTTGACAAATCTAAC+AGG - chr6.3:37179927-37179946 MS.gene80496:intron 35.0%
GTGTGGCGAATTTATGTTAT+AGG + chr6.3:37180872-37180891 None:intergenic 35.0%
TAAAACAAGAGGACGGAAAA+TGG - chr6.3:37180578-37180597 MS.gene80496:CDS 35.0%
TAATATGTCTGTTAGGAGCA+GGG - chr6.3:37180325-37180344 MS.gene80496:intron 35.0%
TATATATGCAGTACACCCAA+AGG - chr6.3:37180474-37180493 MS.gene80496:CDS 35.0%
TCAAAGTTAAATCCCAGCAT+AGG + chr6.3:37179812-37179831 None:intergenic 35.0%
TGATATTCACACATTTCCCA+TGG + chr6.3:37181027-37181046 None:intergenic 35.0%
TTCACAGCGAATCAATGTTA+GGG - chr6.3:37179374-37179393 MS.gene80496:CDS 35.0%
! GCTGGGATTTAACTTTGAAA+GGG - chr6.3:37179814-37179833 MS.gene80496:intron 35.0%
! TGCTGGGATTTAACTTTGAA+AGG - chr6.3:37179813-37179832 MS.gene80496:intron 35.0%
!! AAAGTGCCGACAAGAAATAA+AGG - chr6.3:37179558-37179577 MS.gene80496:intron 35.0%
!! AAGGGAAGTCTTGTTTCTAA+AGG - chr6.3:37179611-37179630 MS.gene80496:intron 35.0%
!! CTGGGGGTGTTAAAAAAAAT+TGG - chr6.3:37180601-37180620 MS.gene80496:CDS 35.0%
!! CTTTTAGGCCTATTTGAAGT+AGG + chr6.3:37180556-37180575 None:intergenic 35.0%
!!! TCCTCTTGTTTTAGCCTTTT+AGG + chr6.3:37180571-37180590 None:intergenic 35.0%
AGCCTCTAAATTCTTAGGGA+CGG + chr6.3:37180351-37180370 None:intergenic 40.0%
ATCACTATGAACAGCCACTA+AGG + chr6.3:37179867-37179886 None:intergenic 40.0%
ATCGCATGCAAGAGAAAGAT+TGG - chr6.3:37179837-37179856 MS.gene80496:intron 40.0%
ATCTCAGGTTAAGCAGACAA+AGG - chr6.3:37180099-37180118 MS.gene80496:intron 40.0%
ATTCGCTGTGAAGGAAAAGA+AGG + chr6.3:37179366-37179385 None:intergenic 40.0%
ATTTGTGAGAGATGGTTCCA+TGG - chr6.3:37181007-37181026 MS.gene80496:CDS 40.0%
CAAGAGGACCTACTTCAAAT+AGG - chr6.3:37180545-37180564 MS.gene80496:CDS 40.0%
CATCAAGCCTAAGAAGTTCA+AGG - chr6.3:37180207-37180226 MS.gene80496:intron 40.0%
CTAATATGTCTGTTAGGAGC+AGG - chr6.3:37180324-37180343 MS.gene80496:intron 40.0%
CTCTCTCTCAATTTCTTAGG+AGG - chr6.3:37180838-37180857 MS.gene80496:intron 40.0%
CTTCACAGCGAATCAATGTT+AGG - chr6.3:37179373-37179392 MS.gene80496:CDS 40.0%
GAGGAAGATGAAGATGAAGA+AGG - chr6.3:37180920-37180939 MS.gene80496:intron 40.0%
GCCTAAAAGGCTAAAACAAG+AGG - chr6.3:37180567-37180586 MS.gene80496:CDS 40.0%
GGAAAAAAAACTCGTGTTCC+TGG - chr6.3:37179423-37179442 MS.gene80496:CDS 40.0%
TCACAGCGAATCAATGTTAG+GGG - chr6.3:37179375-37179394 MS.gene80496:CDS 40.0%
TCCCTAAGAATTTAGAGGCT+CGG - chr6.3:37180351-37180370 MS.gene80496:intron 40.0%
TCTGTGACATTTGTGAGAGA+TGG - chr6.3:37180999-37181018 MS.gene80496:CDS 40.0%
TGATGCATGGTTAATTGCCA+TGG - chr6.3:37179883-37179902 MS.gene80496:intron 40.0%
TTTGTGAGAGATGGTTCCAT+GGG - chr6.3:37181008-37181027 MS.gene80496:CDS 40.0%
! GAAAGATTGGCTATCCTTAG+TGG - chr6.3:37179850-37179869 MS.gene80496:intron 40.0%
! TTTGGAGTTACCTAAAGACG+AGG - chr6.3:37180123-37180142 MS.gene80496:intron 40.0%
!! ACGGTAGTCATTTTCACCTT+TGG + chr6.3:37180493-37180512 None:intergenic 40.0%
!! ACTAGGATTTGCTGCCATTA+TGG + chr6.3:37180051-37180070 None:intergenic 40.0%
!! CGGTAGTCATTTTCACCTTT+GGG + chr6.3:37180492-37180511 None:intergenic 40.0%
!! CTAACATTGATTCGCTGTGA+AGG + chr6.3:37179375-37179394 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr6.3:37180530-37180549 None:intergenic 40.0%
AAAAAAATGAGGCCCATGGC+TGG - chr6.3:37180650-37180669 MS.gene80496:CDS 45.0%
AAAAAATGAGGCCCATGGCT+GGG - chr6.3:37180651-37180670 MS.gene80496:CDS 45.0%
ACAGTTTCCCTAATGAGCAG+TGG - chr6.3:37179741-37179760 MS.gene80496:intron 45.0%
AGCCGAGCCTCTAAATTCTT+AGG + chr6.3:37180356-37180375 None:intergenic 45.0%
AGCCGTACTGTGTTCAGAAA+AGG - chr6.3:37180170-37180189 MS.gene80496:intron 45.0%
ATTGCCATGGCACACTACTT+TGG - chr6.3:37179896-37179915 MS.gene80496:intron 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr6.3:37180529-37180548 MS.gene80496:CDS 45.0%
CAGTTTCCCTAATGAGCAGT+GGG - chr6.3:37179742-37179761 MS.gene80496:intron 45.0%
CGATATGCTTAACCCTAGCA+GGG + chr6.3:37181051-37181070 None:intergenic 45.0%
CTGCACTTTCGAATTGCACT+AGG + chr6.3:37180068-37180087 None:intergenic 45.0%
CTTTCTACCAACTCCTAACC+AGG + chr6.3:37180722-37180741 None:intergenic 45.0%
GAAGAAGGAGAGAACTCATG+TGG - chr6.3:37180935-37180954 MS.gene80496:intron 45.0%
GATATGCTTAACCCTAGCAG+GGG + chr6.3:37181050-37181069 None:intergenic 45.0%
GCCGAGCCTCTAAATTCTTA+GGG + chr6.3:37180355-37180374 None:intergenic 45.0%
GGTTAAGCAGACAAAGGCTT+TGG - chr6.3:37180105-37180124 MS.gene80496:intron 45.0%
GTTAAATCCCAGCATAGGCT+CGG + chr6.3:37179807-37179826 None:intergenic 45.0%
GTTAGGGGAAAGAAATCTCG+TGG - chr6.3:37179390-37179409 MS.gene80496:CDS 45.0%
TAACCAATCTGACCCAGAGA+AGG - chr6.3:37179703-37179722 MS.gene80496:intron 45.0%
TCGATATGCTTAACCCTAGC+AGG + chr6.3:37181052-37181071 None:intergenic 45.0%
TGACTTCCCACTGCTCATTA+GGG + chr6.3:37179751-37179770 None:intergenic 45.0%
TGGAAGGCAGTAGTACTAGT+GGG - chr6.3:37180621-37180640 MS.gene80496:CDS 45.0%
TGGCTGTTCATAGTGATGCA+TGG - chr6.3:37179870-37179889 MS.gene80496:intron 45.0%
TGTGAATATCACCCCTGCTA+GGG - chr6.3:37181036-37181055 MS.gene80496:CDS 45.0%
TTAAATCCCAGCATAGGCTC+GGG + chr6.3:37179806-37179825 None:intergenic 45.0%
TTGACTTCCCACTGCTCATT+AGG + chr6.3:37179752-37179771 None:intergenic 45.0%
TTGCCATGGCACACTACTTT+GGG - chr6.3:37179897-37179916 MS.gene80496:intron 45.0%
TTGGAAGGCAGTAGTACTAG+TGG - chr6.3:37180620-37180639 MS.gene80496:CDS 45.0%
! AGTGCAATTCGAAAGTGCAG+CGG - chr6.3:37180068-37180087 MS.gene80496:intron 45.0%
! GAAGTAGGTCCTCTTGCTTT+TGG + chr6.3:37180541-37180560 None:intergenic 45.0%
! GGCCTTTTCTGAACACAGTA+CGG + chr6.3:37180175-37180194 None:intergenic 45.0%
! GTATCGATCTCCTCGTCTTT+AGG + chr6.3:37180136-37180155 None:intergenic 45.0%
!! AGGCTTGATGATGTCTCTCT+TGG + chr6.3:37180197-37180216 None:intergenic 45.0%
!! CTGGTTAGGAGTTGGTAGAA+AGG - chr6.3:37180720-37180739 MS.gene80496:CDS 45.0%
!! GGCTTGATGATGTCTCTCTT+GGG + chr6.3:37180196-37180215 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr6.3:37180531-37180550 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr6.3:37180529-37180548 None:intergenic 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG + chr6.3:37180534-37180553 None:intergenic 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG + chr6.3:37180528-37180547 None:intergenic 45.0%
AAAAATGAGGCCCATGGCTG+GGG - chr6.3:37180652-37180671 MS.gene80496:CDS 50.0%
AAGAGGACGGAAAATGGCTG+GGG - chr6.3:37180584-37180603 MS.gene80496:CDS 50.0%
ACAAGAGGACGGAAAATGGC+TGG - chr6.3:37180582-37180601 MS.gene80496:CDS 50.0%
AGAATTTAGAGGCTCGGCTC+TGG - chr6.3:37180357-37180376 MS.gene80496:intron 50.0%
CAAGAGGACGGAAAATGGCT+GGG - chr6.3:37180583-37180602 MS.gene80496:CDS 50.0%
GAATTTAGAGGCTCGGCTCT+GGG - chr6.3:37180358-37180377 MS.gene80496:intron 50.0%
GAGAACTCATGTGGTGCATG+CGG - chr6.3:37180944-37180963 MS.gene80496:intron 50.0%
GAGGAGATCGATACAGACCA+GGG - chr6.3:37180142-37180161 MS.gene80496:intron 50.0%
GCAAACAGCTCAACAGAGCT+GGG + chr6.3:37180682-37180701 None:intergenic 50.0%
GCAGCGGGGTATAAAATCTC+AGG - chr6.3:37180084-37180103 MS.gene80496:intron 50.0%
GGCCGTCCCTAAGAATTTAG+AGG - chr6.3:37180346-37180365 MS.gene80496:intron 50.0%
GTGGGGGTTCCTCATGTATA+CGG + chr6.3:37180512-37180531 None:intergenic 50.0%
GTGTGAATATCACCCCTGCT+AGG - chr6.3:37181035-37181054 MS.gene80496:CDS 50.0%
TCCTGGCAAAACTTGTCAGC+AGG - chr6.3:37179440-37179459 MS.gene80496:CDS 50.0%
TCTCCTTCTCTGGGTCAGAT+TGG + chr6.3:37179709-37179728 None:intergenic 50.0%
TCTGGGGGAACTTCCTTAGA+AGG + chr6.3:37179779-37179798 None:intergenic 50.0%
TGCAAACAGCTCAACAGAGC+TGG + chr6.3:37180683-37180702 None:intergenic 50.0%
TGCCATGGCACACTACTTTG+GGG - chr6.3:37179898-37179917 MS.gene80496:intron 50.0%
! ACCTGCTGACAAGTTTTGCC+AGG + chr6.3:37179444-37179463 None:intergenic 50.0%
! GTGCAATTCGAAAGTGCAGC+GGG - chr6.3:37180069-37180088 MS.gene80496:intron 50.0%
! TGCAATTCGAAAGTGCAGCG+GGG - chr6.3:37180070-37180089 MS.gene80496:intron 50.0%
!! CACTACTTTGGGGCAAGATG+TGG - chr6.3:37179908-37179927 MS.gene80496:intron 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr6.3:37180370-37180389 MS.gene80496:intron 50.0%
AAAATGAGGCCCATGGCTGG+GGG - chr6.3:37180653-37180672 MS.gene80496:CDS 55.0%
ACCCAGAGAAGGAGAGTCTG+TGG - chr6.3:37179714-37179733 MS.gene80496:intron 55.0%
AGAGGACGGAAAATGGCTGG+GGG - chr6.3:37180585-37180604 MS.gene80496:CDS 55.0%
AGATCTTCCCGAGCCTATGC+TGG - chr6.3:37179796-37179815 MS.gene80496:intron 55.0%
AGCATAGGCTCGGGAAGATC+TGG + chr6.3:37179797-37179816 None:intergenic 55.0%
AGCCACAGACTCTCCTTCTC+TGG + chr6.3:37179719-37179738 None:intergenic 55.0%
ATAGGCTCGGGAAGATCTGG+GGG + chr6.3:37179794-37179813 None:intergenic 55.0%
CATAGGCTCGGGAAGATCTG+GGG + chr6.3:37179795-37179814 None:intergenic 55.0%
CCACACACGCCCATCAGATA+TGG - chr6.3:37180886-37180905 MS.gene80496:intron 55.0%
CGAGGAGATCGATACAGACC+AGG - chr6.3:37180141-37180160 MS.gene80496:intron 55.0%
GATCTTCCCGAGCCTATGCT+GGG - chr6.3:37179797-37179816 MS.gene80496:intron 55.0%
GATTTCAATGGTCGTCGCGC+TGG - chr6.3:37179641-37179660 MS.gene80496:intron 55.0%
GCATAGGCTCGGGAAGATCT+GGG + chr6.3:37179796-37179815 None:intergenic 55.0%
GCCACAGACTCTCCTTCTCT+GGG + chr6.3:37179718-37179737 None:intergenic 55.0%
TACCAACTCCTAACCAGGCC+CGG + chr6.3:37180717-37180736 None:intergenic 55.0%
TGCCCCAAAGTAGTGTGCCA+TGG + chr6.3:37179903-37179922 None:intergenic 55.0%
! CCATATCTGATGGGCGTGTG+TGG + chr6.3:37180889-37180908 None:intergenic 55.0%
CACAGTACGGCTCACATCCC+TGG + chr6.3:37180162-37180181 None:intergenic 60.0%
GAGCTGTTTGCACCCCCTCA+GGG - chr6.3:37180691-37180710 MS.gene80496:CDS 60.0%
TGAGCTGTTTGCACCCCCTC+AGG - chr6.3:37180690-37180709 MS.gene80496:CDS 60.0%
! TCGTCGCGCTGGTCTCATCA+AGG - chr6.3:37179652-37179671 MS.gene80496:intron 60.0%
TGTTTGCACCCCCTCAGGGC+CGG - chr6.3:37180695-37180714 MS.gene80496:CDS 65.0%
ATGAGGCCCATGGCTGGGGG+AGG - chr6.3:37180656-37180675 MS.gene80496:CDS 70.0%
CTAACCAGGCCCGGCCCTGA+GGG + chr6.3:37180708-37180727 None:intergenic 70.0%
GGCCGGGCCTGGTTAGGAGT+TGG - chr6.3:37180712-37180731 MS.gene80496:CDS 70.0%
GTTTGCACCCCCTCAGGGCC+GGG - chr6.3:37180696-37180715 MS.gene80496:CDS 70.0%
TAACCAGGCCCGGCCCTGAG+GGG + chr6.3:37180707-37180726 None:intergenic 70.0%
AACCAGGCCCGGCCCTGAGG+GGG + chr6.3:37180706-37180725 None:intergenic 75.0%
AGCTGGGCCTCCCCCAGCCA+TGG + chr6.3:37180666-37180685 None:intergenic 75.0%
CCTAACCAGGCCCGGCCCTG+AGG + chr6.3:37180709-37180728 None:intergenic 75.0%
CCTCAGGGCCGGGCCTGGTT+AGG - chr6.3:37180706-37180725 MS.gene80496:CDS 75.0%
GCTGGGCCTCCCCCAGCCAT+GGG + chr6.3:37180665-37180684 None:intergenic 75.0%
! CACCCCCTCAGGGCCGGGCC+TGG - chr6.3:37180701-37180720 MS.gene80496:CDS 85.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 37179357 37181084 37179357 ID=MS.gene80496
chr6.3 mRNA 37179357 37181084 37179357 ID=MS.gene80496.t1;Parent=MS.gene80496
chr6.3 exon 37180988 37181084 37180988 ID=MS.gene80496.t1.exon1;Parent=MS.gene80496.t1
chr6.3 CDS 37180988 37181084 37180988 ID=cds.MS.gene80496.t1;Parent=MS.gene80496.t1
chr6.3 exon 37180420 37180808 37180420 ID=MS.gene80496.t1.exon2;Parent=MS.gene80496.t1
chr6.3 CDS 37180420 37180808 37180420 ID=cds.MS.gene80496.t1;Parent=MS.gene80496.t1
chr6.3 exon 37180275 37180335 37180275 ID=MS.gene80496.t1.exon3;Parent=MS.gene80496.t1
chr6.3 CDS 37180275 37180335 37180275 ID=cds.MS.gene80496.t1;Parent=MS.gene80496.t1
chr6.3 exon 37179357 37179538 37179357 ID=MS.gene80496.t1.exon4;Parent=MS.gene80496.t1
chr6.3 CDS 37179357 37179538 37179357 ID=cds.MS.gene80496.t1;Parent=MS.gene80496.t1
Gene Sequence

>MS.gene80496

ATGAAACCTTCTTTTCCTTCACAGCGAATCAATGTTAGGGGAAAGAAATCTCGTGGAATTCAAGTTGGAAAAAAAACTCGTGTTCCTGGCAAAACTTGTCAGCAGGTTGATTTCTAAGCTCCTACTCTATTGCACATATTTTATTTTTAAATTTATAGTTCAATTTGATGCTAACATGTATGTTGTTTAATTTTACACATGAAAGTGCCGACAAGAAATAAAGGTTTTTGCTGCTACACGCAAAAATCTAAGAAAAGGGAAGTCTTGTTTCTAAAGGTTTCAGAGATTTCAATGGTCGTCGCGCTGGTCTCATCAAGGCTCTCACCACTGATGTTGAAGAGTTCTATAACCAATCTGACCCAGAGAAGGAGAGTCTGTGGCTATACAGTTTCCCTAATGAGCAGTGGGAAGTCAATTTACCTTCTAAGGAAGTTCCCCCAGATCTTCCCGAGCCTATGCTGGGATTTAACTTTGAAAGGGATCGCATGCAAGAGAAAGATTGGCTATCCTTAGTGGCTGTTCATAGTGATGCATGGTTAATTGCCATGGCACACTACTTTGGGGCAAGATGTGGATTTGACAAATCTAACAGGATGCGCCTTTTCAATATGATAAATGATATGCCGTCAATATTTGAAGTTGTAACTGGTGCAGAAAAGAAACAAGTAAAGGAGAAGTCTTTATCTTCAAGCCATAATGGCAGCAAATCCTAGTGCAATTCGAAAGTGCAGCGGGGTATAAAATCTCAGGTTAAGCAGACAAAGGCTTTGGAGTTACCTAAAGACGAGGAGATCGATACAGACCAGGGATGTGAGCCGTACTGTGTTCAGAAAAGGCCCAAGAGAGACATCATCAAGCCTAAGAAGTTCAAGGACTTTATTTCCATTTAATGTTTTATGTCATTTATTCAAGTGTCTTAGTTATTCTAGATGTATGATGACTCATTAGTATTCTAGAAGCTTGATGACTAATATGTCTGTTAGGAGCAGGGCCGTCCCTAAGAATTTAGAGGCTCGGCTCTGGGAATGAAAAGAGGCCAGTGATAAAATCAAAACGTTTTTTCTTTTGAAAGAGCAGTGTTCTATTTATATTTTTTAAAAGATAAATACATGTGTCGTATATATGCAGTACACCCAAAGGTGAAAATGACTACCGTATACATGAGGAACCCCCACCTAACACCAAAAGCAAGAGGACCTACTTCAAATAGGCCTAAAAGGCTAAAACAAGAGGACGGAAAATGGCTGGGGGTGTTAAAAAAAATTGGAAGGCAGTAGTACTAGTGGGTATTAAAAAAAAATGAGGCCCATGGCTGGGGGAGGCCCAGCTCTGTTGAGCTGTTTGCACCCCCTCAGGGCCGGGCCTGGTTAGGAGTTGGTAGAAAGGATGAGATCAATCCAATAGCATAAGGAATATTATTAGGATTATATATGTATTGTGTATGATCCTTGAGATTTTTATCAAAGAAGCAAGACCCTTTTCTCTCTCTCAATTTCTTAGGAGGCCTTCTGTCCTATAACATAAATTCGCCACACACGCCCATCAGATATGGAAGAACTTTTTGAGGAAGATGAAGATGAAGAAGGAGAGAACTCATGTGGTGCATGCGGTGAGCAATATGACCCTGATAAATTCTGGATTTTCTGTGACATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAATATCACCCCTGCTAGGGTTAAGCATATCGATATATACAAGTGA
Protein sequence

>MS.gene80496.t1

MKPSFPSQRINVRGKKSRGIQVGKKTRVPGKTCFRDFNGRRAGLIKALTTDVEEFYNQSDPEKESLWLYSFPNEQWEVNLPSKEVPPDLPEPMLGFNFERDRMQEKDWLSLVAVHSDAWLIAMAHYFGARCGFDKSNRMRLFNMINDMPSIFEVVTGAEKKQVKQTKALELPKDEEIDTDQGYMEELFEEDEDEEGENSCGACGEQYDPDKFWIFCDICERWFHGKCVNITPARVKHIDIYK