Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80500.t1 | XP_012068916.1 | 73.5 | 83 | 20 | 2 | 181 | 263 | 175 | 255 | 1.40E-26 | 130.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80500.t1 | Q9FFF5 | 64.2 | 67 | 24 | 0 | 194 | 260 | 172 | 238 | 2.6e-21 | 104.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80500.t1 | A0A0L9UNY2 | 73.2 | 82 | 20 | 2 | 182 | 263 | 171 | 250 | 1.3e-26 | 129.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80500.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80500.t1 | MTR_8g019520 | 76.190 | 84 | 20 | 0 | 180 | 263 | 173 | 256 | 2.15e-33 | 122 |
| MS.gene80500.t1 | MTR_8g019520 | 76.190 | 84 | 20 | 0 | 180 | 263 | 172 | 255 | 2.54e-33 | 122 |
| MS.gene80500.t1 | MTR_2g099500 | 72.414 | 58 | 16 | 0 | 206 | 263 | 193 | 250 | 9.66e-27 | 104 |
| MS.gene80500.t1 | MTR_1g015185 | 74.074 | 54 | 13 | 1 | 210 | 263 | 210 | 262 | 9.26e-24 | 97.1 |
| MS.gene80500.t1 | MTR_4g134510 | 69.231 | 52 | 16 | 0 | 209 | 260 | 201 | 252 | 3.51e-22 | 92.8 |
| MS.gene80500.t1 | MTR_2g040990 | 69.643 | 56 | 14 | 2 | 210 | 263 | 198 | 252 | 1.48e-21 | 90.9 |
| MS.gene80500.t1 | MTR_4g015830 | 66.667 | 54 | 17 | 1 | 210 | 263 | 187 | 239 | 4.61e-20 | 86.7 |
| MS.gene80500.t1 | MTR_7g068590 | 66.667 | 48 | 16 | 0 | 210 | 257 | 189 | 236 | 2.92e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80500.t1 | AT3G42790 | 72.881 | 59 | 15 | 1 | 205 | 263 | 192 | 249 | 2.18e-25 | 101 |
| MS.gene80500.t1 | AT5G20510 | 69.492 | 59 | 17 | 1 | 205 | 263 | 161 | 218 | 8.41e-25 | 99.0 |
| MS.gene80500.t1 | AT5G20510 | 69.492 | 59 | 17 | 1 | 205 | 263 | 202 | 259 | 1.24e-24 | 99.4 |
| MS.gene80500.t1 | AT5G26210 | 75.000 | 56 | 13 | 1 | 208 | 263 | 200 | 254 | 9.05e-24 | 97.1 |
| MS.gene80500.t1 | AT2G02470 | 74.074 | 54 | 13 | 1 | 210 | 263 | 203 | 255 | 1.37e-23 | 96.7 |
| MS.gene80500.t1 | AT2G02470 | 74.074 | 54 | 13 | 1 | 210 | 263 | 194 | 246 | 1.79e-23 | 95.9 |
| MS.gene80500.t1 | AT1G14510 | 68.519 | 54 | 17 | 0 | 210 | 263 | 198 | 251 | 8.58e-23 | 94.4 |
| MS.gene80500.t1 | AT5G05610 | 67.857 | 56 | 18 | 0 | 205 | 260 | 183 | 238 | 4.24e-22 | 92.0 |
| MS.gene80500.t1 | AT5G05610 | 67.857 | 56 | 18 | 0 | 205 | 260 | 183 | 238 | 4.24e-22 | 92.0 |
| MS.gene80500.t1 | AT3G11200 | 51.648 | 91 | 43 | 1 | 166 | 256 | 150 | 239 | 8.59e-21 | 89.0 |
| MS.gene80500.t1 | AT3G11200 | 51.087 | 92 | 44 | 1 | 165 | 256 | 136 | 226 | 1.02e-20 | 88.2 |
Find 66 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCACAAAATAAAT+TGG | 0.134852 | 6.3:-37121016 | MS.gene80500:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6.3:+37121319 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.217890 | 6.3:-37120996 | MS.gene80500:CDS |
| TCTTCCACGTCCTCGTCTTT+AGG | 0.286740 | 6.3:+37120636 | None:intergenic |
| GTTATTGGCGATAATGATAA+TGG | 0.357059 | 6.3:-37120981 | MS.gene80500:CDS |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6.3:-37121332 | MS.gene80500:CDS |
| GATGAAATTTCTCATCCCTT+TGG | 0.371181 | 6.3:-37120876 | MS.gene80500:CDS |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6.3:+37120546 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6.3:-37121075 | MS.gene80500:CDS |
| AACAAGAGAGCTCGCCTTTG+AGG | 0.406560 | 6.3:-37120426 | None:intergenic |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6.3:-37121317 | MS.gene80500:CDS |
| ATATAAGCAGACTAAGGCTT+TGG | 0.417478 | 6.3:-37120664 | MS.gene80500:intron |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6.3:-37121076 | MS.gene80500:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6.3:-37121316 | MS.gene80500:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6.3:-37121343 | MS.gene80500:CDS |
| GAAGTGGATCTATCTCCATA+TGG | 0.428592 | 6.3:+37120946 | None:intergenic |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.3:-37121424 | MS.gene80500:CDS |
| TACTTGATAATAGTGCTATA+AGG | 0.436106 | 6.3:-37120920 | MS.gene80500:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6.3:+37120477 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6.3:-37121454 | MS.gene80500:CDS |
| TTCAACTCACAAAATAAATT+GGG | 0.442196 | 6.3:-37121015 | MS.gene80500:CDS |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6.3:-37120570 | MS.gene80500:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.3:+37120441 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6.3:-37120554 | MS.gene80500:CDS |
| TCTCGTTGAAATTCAATGTC+CGG | 0.468698 | 6.3:+37120834 | None:intergenic |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.3:-37121389 | MS.gene80500:CDS |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6.3:-37121342 | MS.gene80500:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6.3:-37121071 | MS.gene80500:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6.3:-37120491 | MS.gene80500:CDS |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6.3:-37120961 | MS.gene80500:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6.3:-37121453 | MS.gene80500:CDS |
| CCCGACTCATTGTGTGGCAA+TGG | 0.526130 | 6.3:-37121090 | MS.gene80500:CDS |
| AAGTGGATCTATCTCCATAT+GGG | 0.528723 | 6.3:+37120947 | None:intergenic |
| ATATGGGGAAGAGGCAAAAG+AGG | 0.532508 | 6.3:-37121643 | MS.gene80500:intron |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6.3:-37121652 | None:intergenic |
| CCGACTCATTGTGTGGCAAT+GGG | 0.547349 | 6.3:-37121089 | MS.gene80500:CDS |
| TGAGTTGAAGACAAAGGACT+AGG | 0.548259 | 6.3:+37121029 | None:intergenic |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6.3:+37121414 | None:intergenic |
| CCATTGCCACACAATGAGTC+GGG | 0.548885 | 6.3:+37121090 | None:intergenic |
| TTTGTGAAAGGTGGTTCCAT+GGG | 0.551002 | 6.3:-37120518 | MS.gene80500:CDS |
| CTATTATCAAGTATTTGAAG+TGG | 0.557292 | 6.3:+37120930 | None:intergenic |
| ACCAAACATTGAAAATGTAC+CGG | 0.567499 | 6.3:-37120853 | MS.gene80500:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6.3:-37120490 | MS.gene80500:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6.3:+37121064 | None:intergenic |
| CCCATTGCCACACAATGAGT+CGG | 0.571139 | 6.3:+37121089 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6.3:+37120478 | None:intergenic |
| GTTTGTGAAAGGTGGTTCCA+TGG | 0.576614 | 6.3:-37120519 | MS.gene80500:CDS |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.3:+37120502 | None:intergenic |
| TCTGTGACGTTTGTGAAAGG+TGG | 0.583631 | 6.3:-37120527 | MS.gene80500:CDS |
| GTTACCTAAAGACGAGGACG+TGG | 0.590421 | 6.3:-37120640 | MS.gene80500:CDS |
| ATCATTATCGCCAATAACAA+TGG | 0.598580 | 6.3:+37120986 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.3:-37121431 | MS.gene80500:CDS |
| ACTCACAAAATAAATTGGGA+TGG | 0.609531 | 6.3:-37121011 | MS.gene80500:CDS |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6.3:-37121311 | MS.gene80500:intron |
| GGACGTGGAAGAACTTTCTG+AGG | 0.636752 | 6.3:-37120625 | MS.gene80500:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6.3:-37121452 | MS.gene80500:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.3:+37121442 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.3:-37121081 | MS.gene80500:CDS |
| ATATTGCCCGACTCATTGTG+TGG | 0.684429 | 6.3:-37121096 | MS.gene80500:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.3:+37121439 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6.3:+37120547 | None:intergenic |
| TTTGGAGTTACCTAAAGACG+AGG | 0.694066 | 6.3:-37120646 | MS.gene80500:CDS |
| GATAACTCATGTGGTGCATG+CGG | 0.701484 | 6.3:-37120582 | MS.gene80500:CDS |
| GAGGAAGATGAAGATGAACA+CGG | 0.711265 | 6.3:-37120606 | MS.gene80500:CDS |
| GAACACGGAGATAACTCATG+TGG | 0.715888 | 6.3:-37120591 | MS.gene80500:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6.3:+37120479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTCAATTTCAAACAA+TGG | - | chr6.3:37120856-37120875 | MS.gene80500:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6.3:37120526-37120545 | MS.gene80500:CDS | 15.0% |
| !!! | TAGATTTTAACACATTAATT+GGG | - | chr6.3:37121284-37121303 | MS.gene80500:intron | 15.0% |
| !! | TTCAACTCACAAAATAAATT+GGG | - | chr6.3:37121054-37121073 | MS.gene80500:CDS | 20.0% |
| !!! | ATGTTTTATGATTTTGGTTT+TGG | - | chr6.3:37120532-37120551 | MS.gene80500:CDS | 20.0% |
| !!! | GTAGATTTTAACACATTAAT+TGG | - | chr6.3:37121283-37121302 | MS.gene80500:intron | 20.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6.3:37120753-37120772 | None:intergenic | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6.3:37120753-37120772 | MS.gene80500:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6.3:37120726-37120745 | MS.gene80500:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6.3:37121333-37121352 | None:intergenic | 25.0% |
| ! | CTATTATCAAGTATTTGAAG+TGG | + | chr6.3:37121142-37121161 | None:intergenic | 25.0% |
| ! | CTTCAACTCACAAAATAAAT+TGG | - | chr6.3:37121053-37121072 | MS.gene80500:CDS | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6.3:37120708-37120727 | MS.gene80500:intron | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6.3:37120752-37120771 | MS.gene80500:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6.3:37120707-37120726 | MS.gene80500:intron | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6.3:37120727-37120746 | MS.gene80500:intron | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6.3:37121331-37121350 | MS.gene80500:CDS | 25.0% |
| !! | TACTTGATAATAGTGCTATA+AGG | - | chr6.3:37121149-37121168 | MS.gene80500:intron | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6.3:37120824-37120843 | MS.gene80500:CDS | 25.0% |
| !! | TTTTAACACATTAATTGGGA+AGG | - | chr6.3:37121288-37121307 | MS.gene80500:intron | 25.0% |
| ACCAAACATTGAAAATGTAC+CGG | - | chr6.3:37121216-37121235 | MS.gene80500:intron | 30.0% | |
| ACTCACAAAATAAATTGGGA+TGG | - | chr6.3:37121058-37121077 | MS.gene80500:CDS | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6.3:37121525-37121544 | None:intergenic | 30.0% | |
| ATCATTATCGCCAATAACAA+TGG | + | chr6.3:37121086-37121105 | None:intergenic | 30.0% | |
| ATGACATCCTTAATACTTGT+TGG | - | chr6.3:37121323-37121342 | MS.gene80500:CDS | 30.0% | |
| CATATTTGTCATTATTCTGC+AGG | - | chr6.3:37120931-37120950 | MS.gene80500:CDS | 30.0% | |
| CATCTAATATAAGCAGACTA+AGG | - | chr6.3:37121399-37121418 | MS.gene80500:CDS | 30.0% | |
| GTTATTGGCGATAATGATAA+TGG | - | chr6.3:37121088-37121107 | MS.gene80500:CDS | 30.0% | |
| TTAACGAAGATTAACCATGT+AGG | - | chr6.3:37120589-37120608 | MS.gene80500:CDS | 30.0% | |
| ! | ATTTTCAATGTTTGGTCCAA+AGG | + | chr6.3:37121212-37121231 | None:intergenic | 30.0% |
| ! | TTTTCAATGTTTGGTCCAAA+GGG | + | chr6.3:37121211-37121230 | None:intergenic | 30.0% |
| !! | AGGTAAACCTTTTGACTAAT+TGG | - | chr6.3:37120446-37120465 | MS.gene80500:CDS | 30.0% |
| !! | ATTTTGTGAGTTGAAGACAA+AGG | + | chr6.3:37121049-37121068 | None:intergenic | 30.0% |
| !! | TCCTCAATTATTTTTCTCTC+TGG | + | chr6.3:37121175-37121194 | None:intergenic | 30.0% |
| AAGTGGATCTATCTCCATAT+GGG | + | chr6.3:37121125-37121144 | None:intergenic | 35.0% | |
| ATATAAGCAGACTAAGGCTT+TGG | - | chr6.3:37121405-37121424 | MS.gene80500:CDS | 35.0% | |
| ATTTGTCATTATTCTGCAGG+AGG | - | chr6.3:37120934-37120953 | MS.gene80500:CDS | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.3:37120695-37120714 | MS.gene80500:intron | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6.3:37121526-37121545 | None:intergenic | 35.0% | |
| GATGAAATTTCTCATCCCTT+TGG | - | chr6.3:37121193-37121212 | MS.gene80500:intron | 35.0% | |
| GCCAGAGAGAAAAATAATTG+AGG | - | chr6.3:37121171-37121190 | MS.gene80500:intron | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6.3:37120737-37120756 | MS.gene80500:intron | 35.0% | |
| TCTCGTTGAAATTCAATGTC+CGG | + | chr6.3:37121238-37121257 | None:intergenic | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | + | chr6.3:37121570-37121589 | None:intergenic | 35.0% | |
| ! | TCCGGTACATTTTCAATGTT+TGG | + | chr6.3:37121220-37121239 | None:intergenic | 35.0% |
| ! | TTTTCTGTGACGTTTGTGAA+AGG | - | chr6.3:37121539-37121558 | MS.gene80500:intron | 35.0% |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.3:37121631-37121650 | None:intergenic | 35.0% |
| AATATGGCCCTGATGAATTC+TGG | - | chr6.3:37121515-37121534 | MS.gene80500:intron | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.3:37120680-37120699 | MS.gene80500:intron | 40.0% | |
| GAAGTGGATCTATCTCCATA+TGG | + | chr6.3:37121126-37121145 | None:intergenic | 40.0% | |
| GAGGAAGATGAAGATGAACA+CGG | - | chr6.3:37121463-37121482 | MS.gene80500:intron | 40.0% | |
| GGCACATCCAATTAGTCAAA+AGG | + | chr6.3:37120456-37120475 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.3:37120501-37120520 | MS.gene80500:CDS | 40.0% | |
| TGATGCTTTAGTCTCCTACA+TGG | + | chr6.3:37120606-37120625 | None:intergenic | 40.0% | |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6.3:37121108-37121127 | MS.gene80500:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6.3:37120478-37120497 | None:intergenic | 40.0% | |
| TTTGTGAAAGGTGGTTCCAT+GGG | - | chr6.3:37121551-37121570 | MS.gene80500:intron | 40.0% | |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6.3:37121043-37121062 | None:intergenic | 40.0% |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.3:37121423-37121442 | MS.gene80500:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6.3:37120761-37120780 | MS.gene80500:intron | 40.0% |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6.3:37120758-37120777 | MS.gene80500:intron | 40.0% |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6.3:37121008-37121027 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6.3:37120658-37120677 | None:intergenic | 45.0% | |
| ATATTGCCCGACTCATTGTG+TGG | - | chr6.3:37120973-37120992 | MS.gene80500:CDS | 45.0% | |
| GAACACGGAGATAACTCATG+TGG | - | chr6.3:37121478-37121497 | MS.gene80500:intron | 45.0% | |
| GATAACTCATGTGGTGCATG+CGG | - | chr6.3:37121487-37121506 | MS.gene80500:intron | 45.0% | |
| GTTTGTGAAAGGTGGTTCCA+TGG | - | chr6.3:37121550-37121569 | MS.gene80500:intron | 45.0% | |
| TCTGTGACGTTTGTGAAAGG+TGG | - | chr6.3:37121542-37121561 | MS.gene80500:intron | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6.3:37120477-37120496 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6.3:37121073-37121092 | MS.gene80500:CDS | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6.3:37121579-37121598 | MS.gene80500:intron | 45.0% | |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6.3:37120633-37120652 | None:intergenic | 50.0% | |
| CCATTGCCACACAATGAGTC+GGG | + | chr6.3:37120982-37121001 | None:intergenic | 50.0% | |
| CCCATTGCCACACAATGAGT+CGG | + | chr6.3:37120983-37121002 | None:intergenic | 50.0% | |
| CCGACTCATTGTGTGGCAAT+GGG | - | chr6.3:37120980-37120999 | MS.gene80500:CDS | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6.3:37121594-37121613 | None:intergenic | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6.3:37121593-37121612 | None:intergenic | 50.0% | |
| GGACGTGGAAGAACTTTCTG+AGG | - | chr6.3:37121444-37121463 | MS.gene80500:CDS | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6.3:37120638-37120657 | MS.gene80500:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6.3:37121578-37121597 | MS.gene80500:intron | 50.0% | |
| GTTACCTAAAGACGAGGACG+TGG | - | chr6.3:37121429-37121448 | MS.gene80500:CDS | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6.3:37121595-37121614 | None:intergenic | 50.0% | |
| TCTTCCACGTCCTCGTCTTT+AGG | + | chr6.3:37121436-37121455 | None:intergenic | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.3:37120645-37120664 | MS.gene80500:CDS | 50.0% |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6.3:37120616-37120635 | MS.gene80500:CDS | 50.0% |
| CCCGACTCATTGTGTGGCAA+TGG | - | chr6.3:37120979-37120998 | MS.gene80500:CDS | 55.0% | |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6.3:37121499-37121518 | MS.gene80500:intron | 55.0% | |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6.3:37120466-37120485 | MS.gene80500:CDS | 55.0% | |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6.3:37120617-37120636 | MS.gene80500:CDS | 55.0% |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6.3:37120615-37120634 | MS.gene80500:CDS | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.3:37120988-37121007 | MS.gene80500:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.3:37120994-37121013 | MS.gene80500:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.3:37120993-37121012 | MS.gene80500:CDS | 55.0% |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.3:37120630-37120649 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6.3:37120998-37121017 | MS.gene80500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37120428 | 37121663 | 37120428 | ID=MS.gene80500 |
| chr6.3 | mRNA | 37120428 | 37121663 | 37120428 | ID=MS.gene80500.t1;Parent=MS.gene80500 |
| chr6.3 | exon | 37121644 | 37121663 | 37121644 | ID=MS.gene80500.t1.exon1;Parent=MS.gene80500.t1 |
| chr6.3 | CDS | 37121644 | 37121663 | 37121644 | ID=cds.MS.gene80500.t1;Parent=MS.gene80500.t1 |
| chr6.3 | exon | 37121312 | 37121480 | 37121312 | ID=MS.gene80500.t1.exon2;Parent=MS.gene80500.t1 |
| chr6.3 | CDS | 37121312 | 37121480 | 37121312 | ID=cds.MS.gene80500.t1;Parent=MS.gene80500.t1 |
| chr6.3 | exon | 37120782 | 37121138 | 37120782 | ID=MS.gene80500.t1.exon3;Parent=MS.gene80500.t1 |
| chr6.3 | CDS | 37120782 | 37121138 | 37120782 | ID=cds.MS.gene80500.t1;Parent=MS.gene80500.t1 |
| chr6.3 | exon | 37120428 | 37120676 | 37120428 | ID=MS.gene80500.t1.exon4;Parent=MS.gene80500.t1 |
| chr6.3 | CDS | 37120428 | 37120676 | 37120428 | ID=cds.MS.gene80500.t1;Parent=MS.gene80500.t1 |
| Gene Sequence |
| Protein sequence |
