Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80502.t1 | XP_027366958.1 | 60.8 | 130 | 50 | 1 | 36 | 164 | 69 | 198 | 1.20E-34 | 156.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80502.t1 | Q9LT89 | 58.8 | 119 | 43 | 2 | 46 | 158 | 48 | 166 | 6.9e-28 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80502.t1 | A0A1S2XYS3 | 67.0 | 115 | 38 | 0 | 50 | 164 | 70 | 184 | 9.2e-34 | 152.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80502.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80502.t1 | MTR_1g101810 | 67.769 | 121 | 39 | 0 | 44 | 164 | 54 | 174 | 7.89e-52 | 168 |
| MS.gene80502.t1 | MTR_1g101810 | 67.769 | 121 | 39 | 0 | 44 | 164 | 84 | 204 | 1.39e-51 | 168 |
| MS.gene80502.t1 | MTR_8g033070 | 56.637 | 113 | 41 | 2 | 54 | 158 | 80 | 192 | 5.68e-36 | 127 |
| MS.gene80502.t1 | MTR_7g028160 | 49.091 | 110 | 50 | 2 | 51 | 154 | 47 | 156 | 1.74e-27 | 104 |
| MS.gene80502.t1 | MTR_1g038650 | 53.684 | 95 | 42 | 1 | 37 | 129 | 15 | 109 | 4.46e-27 | 102 |
| MS.gene80502.t1 | MTR_4g108370 | 61.446 | 83 | 26 | 1 | 44 | 120 | 81 | 163 | 7.69e-27 | 104 |
| MS.gene80502.t1 | MTR_5g039600 | 46.610 | 118 | 43 | 2 | 23 | 120 | 16 | 133 | 1.33e-26 | 103 |
| MS.gene80502.t1 | MTR_2g006150 | 69.697 | 66 | 20 | 0 | 51 | 116 | 127 | 192 | 2.16e-26 | 103 |
| MS.gene80502.t1 | MTR_2g006150 | 54.945 | 91 | 41 | 0 | 51 | 141 | 127 | 217 | 2.43e-26 | 103 |
| MS.gene80502.t1 | MTR_1g114380 | 68.182 | 66 | 21 | 0 | 51 | 116 | 30 | 95 | 2.52e-26 | 100 |
| MS.gene80502.t1 | MTR_1g063870 | 62.162 | 74 | 27 | 1 | 43 | 116 | 39 | 111 | 2.17e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80502.t1 | AT5G51910 | 52.985 | 134 | 53 | 3 | 35 | 158 | 33 | 166 | 3.12e-36 | 127 |
| MS.gene80502.t1 | AT5G51910 | 52.985 | 134 | 53 | 3 | 35 | 158 | 33 | 166 | 3.12e-36 | 127 |
| MS.gene80502.t1 | AT2G45680 | 54.622 | 119 | 51 | 2 | 48 | 164 | 69 | 186 | 3.31e-36 | 128 |
| MS.gene80502.t1 | AT1G72010 | 69.118 | 68 | 21 | 0 | 49 | 116 | 58 | 125 | 3.00e-27 | 105 |
| MS.gene80502.t1 | AT5G23280 | 60.759 | 79 | 29 | 1 | 38 | 116 | 25 | 101 | 7.94e-27 | 101 |
| MS.gene80502.t1 | AT5G08330 | 69.697 | 66 | 20 | 0 | 51 | 116 | 28 | 93 | 1.27e-26 | 100 |
| MS.gene80502.t1 | AT1G69690 | 63.014 | 73 | 27 | 0 | 48 | 120 | 46 | 118 | 3.22e-26 | 101 |
| MS.gene80502.t1 | AT1G35560 | 67.647 | 68 | 22 | 0 | 51 | 118 | 52 | 119 | 1.19e-25 | 100 |
| MS.gene80502.t1 | AT3G47620 | 56.180 | 89 | 33 | 1 | 38 | 120 | 95 | 183 | 2.62e-25 | 100 |
| MS.gene80502.t1 | AT1G58100 | 66.667 | 66 | 22 | 0 | 51 | 116 | 57 | 122 | 4.70e-25 | 99.8 |
| MS.gene80502.t1 | AT3G27010 | 66.154 | 65 | 22 | 0 | 51 | 115 | 75 | 139 | 2.87e-24 | 96.3 |
| MS.gene80502.t1 | AT3G27010 | 66.154 | 65 | 22 | 0 | 51 | 115 | 75 | 139 | 2.87e-24 | 96.3 |
| MS.gene80502.t1 | AT5G41030 | 66.154 | 65 | 22 | 0 | 51 | 115 | 65 | 129 | 8.95e-24 | 93.6 |
| MS.gene80502.t1 | AT2G37000 | 69.492 | 59 | 18 | 0 | 54 | 112 | 43 | 101 | 3.40e-22 | 88.2 |
| MS.gene80502.t1 | AT3G45150 | 50.769 | 65 | 32 | 0 | 50 | 114 | 13 | 77 | 9.46e-18 | 76.3 |
Find 48 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTGAAGACTATAAT+AGG | 0.213473 | 6.3:+37101218 | None:intergenic |
| GCTCTCTTGCTTCTCTTACT+TGG | 0.228575 | 6.3:+37097866 | None:intergenic |
| CTCTCTTGCTTCTCTTACTT+GGG | 0.240760 | 6.3:+37097867 | None:intergenic |
| CTTGGGGCGCCTTGGTCGTT+TGG | 0.321974 | 6.3:+37097884 | None:intergenic |
| ATCATTGAAGCCACCGGCAC+TGG | 0.391941 | 6.3:-37097974 | MS.gene80502:CDS |
| TTCTCTTACTTGGGGCGCCT+TGG | 0.398804 | 6.3:+37097876 | None:intergenic |
| GACAATGAGCCTTAACGTAT+AGG | 0.421189 | 6.3:+37101256 | None:intergenic |
| ACAATGAGCCTTAACGTATA+GGG | 0.444913 | 6.3:+37101257 | None:intergenic |
| TTTGATGGTTTCTTCGCTGC+CGG | 0.445064 | 6.3:+37098145 | None:intergenic |
| AAGACTATAATAGGGTTGTA+TGG | 0.448632 | 6.3:+37101227 | None:intergenic |
| TACATCTGAAGACTATAATA+GGG | 0.452154 | 6.3:+37101219 | None:intergenic |
| TCCTTCCTCTGACACTACTA+TGG | 0.453090 | 6.3:+37097940 | None:intergenic |
| ATCCTCTCTGCGCATGTTGT+CGG | 0.457072 | 6.3:+37098076 | None:intergenic |
| AGAAACAATAAAGTGGTTGT+TGG | 0.479416 | 6.3:-37098014 | MS.gene80502:CDS |
| CCATGGAGCCCTATACGTTA+AGG | 0.486309 | 6.3:-37101265 | MS.gene80502:CDS |
| AGCTGCAAATGGTGAATTTG+TGG | 0.493216 | 6.3:-37097846 | MS.gene80502:CDS |
| TTTCAGTTGACAAGGGAGCT+TGG | 0.499064 | 6.3:-37098052 | MS.gene80502:CDS |
| AGAAGCAAGAGAGCTGCAAA+TGG | 0.516567 | 6.3:-37097857 | MS.gene80502:CDS |
| TCCTCTGACACTACTATGGC+CGG | 0.520698 | 6.3:+37097944 | None:intergenic |
| TATAATAGGGTTGTATGGAC+TGG | 0.520701 | 6.3:+37101232 | None:intergenic |
| GGCCGGAGTTATTCCAGTGC+CGG | 0.521737 | 6.3:+37097961 | None:intergenic |
| GGTCTTGCCGCCGATGATGT+TGG | 0.530417 | 6.3:+37097905 | None:intergenic |
| GAGCTTGGTCACAAGTCTGC+TGG | 0.540791 | 6.3:-37098037 | MS.gene80502:CDS |
| GTCAGAGGAAGGAAGGTTTG+AGG | 0.545984 | 6.3:-37097930 | MS.gene80502:CDS |
| TCTCTTGCTTCTCTTACTTG+GGG | 0.552942 | 6.3:+37097868 | None:intergenic |
| AGAGGATCTTTCAGTTGACA+AGG | 0.553516 | 6.3:-37098060 | MS.gene80502:CDS |
| CGGAGTTATTCCAGTGCCGG+TGG | 0.561440 | 6.3:+37097964 | None:intergenic |
| TAGTAGTGTCAGAGGAAGGA+AGG | 0.563775 | 6.3:-37097937 | MS.gene80502:CDS |
| AGACCGTCGCAAGAAGGTGG+AGG | 0.564734 | 6.3:-37098122 | MS.gene80502:CDS |
| AAAAGACCGTCGCAAGAAGG+TGG | 0.565336 | 6.3:-37098125 | MS.gene80502:CDS |
| ATCAAAAGACCGTCGCAAGA+AGG | 0.566989 | 6.3:-37098128 | MS.gene80502:CDS |
| GTTTGAGGTTCCAACATCAT+CGG | 0.570338 | 6.3:-37097915 | MS.gene80502:CDS |
| GTTGTCGGCAGTGTGACTCT+CGG | 0.580156 | 6.3:+37098091 | None:intergenic |
| CCGGTGGCTTCAATGATCGC+AGG | 0.580206 | 6.3:+37097980 | None:intergenic |
| CACCGGCACTGGAATAACTC+CGG | 0.581627 | 6.3:-37097963 | MS.gene80502:CDS |
| GCCATAGTAGTGTCAGAGGA+AGG | 0.584715 | 6.3:-37097941 | MS.gene80502:CDS |
| AGATATGACAATGACAGTGC+CGG | 0.584868 | 6.3:-37098164 | MS.gene80502:CDS |
| GTCCCTCCACCTTCTTGCGA+CGG | 0.586255 | 6.3:+37098119 | None:intergenic |
| CCTTAACGTATAGGGCTCCA+TGG | 0.592757 | 6.3:+37101265 | None:intergenic |
| CCTGCGATCATTGAAGCCAC+CGG | 0.601370 | 6.3:-37097980 | MS.gene80502:CDS |
| CTGCTGGAGAAACAATAAAG+TGG | 0.601560 | 6.3:-37098021 | MS.gene80502:CDS |
| GACCGTCGCAAGAAGGTGGA+GGG | 0.621793 | 6.3:-37098121 | MS.gene80502:CDS |
| GAGGATCTTTCAGTTGACAA+GGG | 0.630963 | 6.3:-37098059 | MS.gene80502:CDS |
| GATAAGTCTTCATTGTGCCA+TGG | 0.633115 | 6.3:-37101282 | MS.gene80502:CDS |
| TCCGGCCATAGTAGTGTCAG+AGG | 0.633987 | 6.3:-37097945 | MS.gene80502:CDS |
| GCGGCAAGACCAAACGACCA+AGG | 0.637466 | 6.3:-37097893 | MS.gene80502:CDS |
| TGAGGTTCCAACATCATCGG+CGG | 0.643589 | 6.3:-37097912 | MS.gene80502:CDS |
| TGCCGACAACATGCGCAGAG+AGG | 0.683824 | 6.3:-37098078 | MS.gene80502:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAATATGATG+TGG | + | chr6.3:37099583-37099602 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAAGATTTCTTT+CGG | - | chr6.3:37100445-37100464 | MS.gene80502:intron | 10.0% |
| !! | TAAATTACAAAATTATCATT+AGG | - | chr6.3:37098885-37098904 | MS.gene80502:intron | 10.0% |
| !!! | TTTTTTTAAAGAAACTAAAA+TGG | - | chr6.3:37099599-37099618 | MS.gene80502:intron | 10.0% |
| !! | AATGTTGAAAAAATATTGTA+AGG | - | chr6.3:37098276-37098295 | MS.gene80502:intron | 15.0% |
| !! | ATTGAATTATAAATGATAGA+TGG | + | chr6.3:37100480-37100499 | None:intergenic | 15.0% |
| !! | TATGAGAGAAAATAAAAATT+GGG | + | chr6.3:37100746-37100765 | None:intergenic | 15.0% |
| !! | TTATATCAACATCTTTAAAT+AGG | - | chr6.3:37100217-37100236 | MS.gene80502:intron | 15.0% |
| !! | TTTACAAACGAATTATTTAT+TGG | + | chr6.3:37099180-37099199 | None:intergenic | 15.0% |
| !!! | AACGAAAACATTTTAAAATA+TGG | - | chr6.3:37100126-37100145 | MS.gene80502:intron | 15.0% |
| !!! | AATTTACATTTTTTTTGGAA+AGG | + | chr6.3:37100428-37100447 | None:intergenic | 15.0% |
| !!! | ATTATTTATTGGTGATATAT+AGG | + | chr6.3:37099169-37099188 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTACAACGAAAT+AGG | + | chr6.3:37099302-37099321 | None:intergenic | 15.0% |
| !!! | TATTTTTTCAATATTCTCTA+GGG | + | chr6.3:37099426-37099445 | None:intergenic | 15.0% |
| !!! | TTATTAATTTTTGTTTAGGA+TGG | - | chr6.3:37100887-37100906 | MS.gene80502:intron | 15.0% |
| !!! | TTATTGTTATTATGACTTAA+GGG | + | chr6.3:37098346-37098365 | None:intergenic | 15.0% |
| !!! | TTATTTATTGGTGATATATA+GGG | + | chr6.3:37099168-37099187 | None:intergenic | 15.0% |
| !!! | TTATTTTTTCAATATTCTCT+AGG | + | chr6.3:37099427-37099446 | None:intergenic | 15.0% |
| !!! | TTTCAATTGAATTATTTTCT+AGG | + | chr6.3:37098063-37098082 | None:intergenic | 15.0% |
| !! | AAATTAAGCTACAATCTTAT+TGG | + | chr6.3:37099830-37099849 | None:intergenic | 20.0% |
| !! | ACTTATATTAGTTAAGCTTA+GGG | + | chr6.3:37098584-37098603 | None:intergenic | 20.0% |
| !! | AGAAGAAACTTGTAAAATAT+AGG | + | chr6.3:37098706-37098725 | None:intergenic | 20.0% |
| !! | ATGAATTTGACAAAAGAAAA+TGG | - | chr6.3:37100084-37100103 | MS.gene80502:intron | 20.0% |
| !! | ATGAGAGAAAATAAAAATTG+GGG | + | chr6.3:37100745-37100764 | None:intergenic | 20.0% |
| !! | CAAAATCAAAACAGAAAAAA+AGG | - | chr6.3:37099697-37099716 | MS.gene80502:intron | 20.0% |
| !! | GAAAATAATTCAATTGAAAC+TGG | - | chr6.3:37098064-37098083 | MS.gene80502:CDS | 20.0% |
| !! | GTATGAGAGAAAATAAAAAT+TGG | + | chr6.3:37100747-37100766 | None:intergenic | 20.0% |
| !! | TAAATAGATTCAGTATTTGT+TGG | + | chr6.3:37099401-37099420 | None:intergenic | 20.0% |
| !! | TGTTAAAATTAGAATACTGT+TGG | - | chr6.3:37099347-37099366 | MS.gene80502:intron | 20.0% |
| !! | TTAGTCAGATTTAGTTAAAT+AGG | - | chr6.3:37100375-37100394 | MS.gene80502:intron | 20.0% |
| !!! | AATCTTTTCTTCCTTATTTT+TGG | + | chr6.3:37099667-37099686 | None:intergenic | 20.0% |
| !!! | ATATTACTTTTCAACTCATT+TGG | + | chr6.3:37099937-37099956 | None:intergenic | 20.0% |
| !!! | CTTATTGTTATTATGACTTA+AGG | + | chr6.3:37098347-37098366 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAATCTACATGAT+GGG | + | chr6.3:37100401-37100420 | None:intergenic | 20.0% |
| !!! | GTTTGCAACTTTAAAAAAAA+AGG | + | chr6.3:37100029-37100048 | None:intergenic | 20.0% |
| !!! | TCAATTTTCAACATTATCAA+AGG | + | chr6.3:37097994-37098013 | None:intergenic | 20.0% |
| !!! | TTATTAATTTTTGTTTAGGG+TGG | - | chr6.3:37100826-37100845 | MS.gene80502:intron | 20.0% |
| !!! | TTTTGAAAACTCTCTTATTT+GGG | - | chr6.3:37098225-37098244 | MS.gene80502:intron | 20.0% |
| !!! | TTTTTGAAAACTCTCTTATT+TGG | - | chr6.3:37098224-37098243 | MS.gene80502:intron | 20.0% |
| ! | AAATAGATAATTGTCCTACA+TGG | - | chr6.3:37099318-37099337 | MS.gene80502:intron | 25.0% |
| ! | AAGCTTAACTAATATAAGTG+TGG | - | chr6.3:37098585-37098604 | MS.gene80502:intron | 25.0% |
| ! | AAGGCAAATTTAAAAGGTAA+TGG | + | chr6.3:37098988-37099007 | None:intergenic | 25.0% |
| ! | ATAAGTACTTTAGTGAACTA+TGG | - | chr6.3:37098362-37098381 | MS.gene80502:intron | 25.0% |
| ! | ATTAGACATTATGTTGTTAG+AGG | - | chr6.3:37099512-37099531 | MS.gene80502:intron | 25.0% |
| ! | CACTTATATTAGTTAAGCTT+AGG | + | chr6.3:37098585-37098604 | None:intergenic | 25.0% |
| ! | CTACTTATAAGAGTGAAAAT+GGG | + | chr6.3:37100596-37100615 | None:intergenic | 25.0% |
| ! | TAAAGTAAACATGCATGTAA+GGG | + | chr6.3:37098181-37098200 | None:intergenic | 25.0% |
| ! | TACATCTGAAGACTATAATA+GGG | + | chr6.3:37097886-37097905 | None:intergenic | 25.0% |
| ! | TATTATAGTCTTCAGATGTA+AGG | - | chr6.3:37097886-37097905 | MS.gene80502:CDS | 25.0% |
| ! | TTAAAGTAAACATGCATGTA+AGG | + | chr6.3:37098182-37098201 | None:intergenic | 25.0% |
| ! | TTACATCTGAAGACTATAAT+AGG | + | chr6.3:37097887-37097906 | None:intergenic | 25.0% |
| ! | TTAGAGTGAATAATACTTAG+TGG | - | chr6.3:37099462-37099481 | MS.gene80502:intron | 25.0% |
| !! | AAAATGTTTTCGTTAGACAT+AGG | + | chr6.3:37100120-37100139 | None:intergenic | 25.0% |
| !! | CATTTTCACTCTTATAAGTA+GGG | - | chr6.3:37100595-37100614 | MS.gene80502:intron | 25.0% |
| !!! | ATTGAATTATTTTCTAGGAG+AGG | + | chr6.3:37098058-37098077 | None:intergenic | 25.0% |
| !!! | GATTTTGATGATATTGACTA+TGG | + | chr6.3:37100680-37100699 | None:intergenic | 25.0% |
| !!! | GCTTTTTTAAATCTACATGA+TGG | + | chr6.3:37100402-37100421 | None:intergenic | 25.0% |
| !!! | TTGTTTTTAACTATCACTTG+TGG | + | chr6.3:37099782-37099801 | None:intergenic | 25.0% |
| AAAGTAGATAAACGAGAGTA+AGG | + | chr6.3:37099979-37099998 | None:intergenic | 30.0% | |
| AAGACTATAATAGGGTTGTA+TGG | + | chr6.3:37097878-37097897 | None:intergenic | 30.0% | |
| AAGTAGATAAACGAGAGTAA+GGG | + | chr6.3:37099978-37099997 | None:intergenic | 30.0% | |
| ACAAAATTATCATTAGGTCC+AGG | - | chr6.3:37098891-37098910 | MS.gene80502:intron | 30.0% | |
| ACAAGTTGTCAGTGATATAT+GGG | + | chr6.3:37099230-37099249 | None:intergenic | 30.0% | |
| AGAAACAATAAAGTGGTTGT+TGG | - | chr6.3:37101088-37101107 | MS.gene80502:intron | 30.0% | |
| ATACACTATAAGTGGTTCAT+GGG | + | chr6.3:37099139-37099158 | None:intergenic | 30.0% | |
| ATGTAAATGTGATCATACCA+TGG | + | chr6.3:37098624-37098643 | None:intergenic | 30.0% | |
| ATTCATAGATCAGAATCAAC+TGG | + | chr6.3:37098508-37098527 | None:intergenic | 30.0% | |
| CAAAACAGAAAAAAAGGAAG+AGG | - | chr6.3:37099703-37099722 | MS.gene80502:intron | 30.0% | |
| CAAAATTATCATTAGGTCCA+GGG | - | chr6.3:37098892-37098911 | MS.gene80502:intron | 30.0% | |
| CCTACTTATAAGAGTGAAAA+TGG | + | chr6.3:37100597-37100616 | None:intergenic | 30.0% | |
| CTTCTTGTGCTAAAAATACA+AGG | + | chr6.3:37099642-37099661 | None:intergenic | 30.0% | |
| GATAGAACTACATAACTCTA+TGG | - | chr6.3:37099097-37099116 | MS.gene80502:intron | 30.0% | |
| TAACAACTATGTGGTTAATC+TGG | + | chr6.3:37099913-37099932 | None:intergenic | 30.0% | |
| TATACACTATAAGTGGTTCA+TGG | + | chr6.3:37099140-37099159 | None:intergenic | 30.0% | |
| TATGTACATGTTGAATGTGT+TGG | + | chr6.3:37100187-37100206 | None:intergenic | 30.0% | |
| TCATTTGGTTAACAACTATG+TGG | + | chr6.3:37099922-37099941 | None:intergenic | 30.0% | |
| TGGAAAACACAAGAAATGAA+AGG | + | chr6.3:37100167-37100186 | None:intergenic | 30.0% | |
| TGTAAATGTGATCATACCAT+GGG | + | chr6.3:37098623-37098642 | None:intergenic | 30.0% | |
| TGTTTACTTTAAGCTTTGCA+AGG | - | chr6.3:37098190-37098209 | MS.gene80502:CDS | 30.0% | |
| TTCATAGATCAGAATCAACT+GGG | + | chr6.3:37098507-37098526 | None:intergenic | 30.0% | |
| TTCATATCAGATAGACTACT+AGG | + | chr6.3:37099259-37099278 | None:intergenic | 30.0% | |
| ! | AGGGTTCTCTTTTATTGTTA+GGG | - | chr6.3:37100614-37100633 | MS.gene80502:intron | 30.0% |
| ! | CCATTTTCACTCTTATAAGT+AGG | - | chr6.3:37100594-37100613 | MS.gene80502:intron | 30.0% |
| ! | TAGGGTTCTCTTTTATTGTT+AGG | - | chr6.3:37100613-37100632 | MS.gene80502:intron | 30.0% |
| ! | TTGATGACAATCTAGAATAG+CGG | + | chr6.3:37098771-37098790 | None:intergenic | 30.0% |
| !! | AACTCTATGGCTTTTGTTTA+TGG | - | chr6.3:37099110-37099129 | MS.gene80502:intron | 30.0% |
| !! | ATTTGAAATGGGTTGTTGTA+TGG | + | chr6.3:37098406-37098425 | None:intergenic | 30.0% |
| !! | TAGTGTCGTTGAGAATTTTA+TGG | + | chr6.3:37098853-37098872 | None:intergenic | 30.0% |
| !! | TTTTTAACTATCACTTGTGG+TGG | + | chr6.3:37099779-37099798 | None:intergenic | 30.0% |
| AAAAAGTGATTTAGAGACCC+CGG | + | chr6.3:37099030-37099049 | None:intergenic | 35.0% | |
| AAGTAGGTGTATTTGGTTAG+TGG | + | chr6.3:37098432-37098451 | None:intergenic | 35.0% | |
| ACAATGAGCCTTAACGTATA+GGG | + | chr6.3:37097848-37097867 | None:intergenic | 35.0% | |
| ACAATTGTCACTGATCGATT+TGG | + | chr6.3:37098830-37098849 | None:intergenic | 35.0% | |
| AGTAGATAAACGAGAGTAAG+GGG | + | chr6.3:37099977-37099996 | None:intergenic | 35.0% | |
| AGTAGGTGTATTTGGTTAGT+GGG | + | chr6.3:37098431-37098450 | None:intergenic | 35.0% | |
| ATCTCCAAAATAGGAACTTC+AGG | - | chr6.3:37098130-37098149 | MS.gene80502:CDS | 35.0% | |
| CAAATACACCTACTTAGGAA+GGG | - | chr6.3:37098437-37098456 | MS.gene80502:intron | 35.0% | |
| CAGCAGAAGGCAAATTTAAA+AGG | + | chr6.3:37098994-37099013 | None:intergenic | 35.0% | |
| CTAACCAAATACACCTACTT+AGG | - | chr6.3:37098432-37098451 | MS.gene80502:intron | 35.0% | |
| CTACAACTATGAACCATATG+AGG | + | chr6.3:37097928-37097947 | None:intergenic | 35.0% | |
| GACAAGTTGTCAGTGATATA+TGG | + | chr6.3:37099231-37099250 | None:intergenic | 35.0% | |
| GGTGAACTATACACTATAAG+TGG | + | chr6.3:37099147-37099166 | None:intergenic | 35.0% | |
| TAAGGGGATATAGAATGATG+TGG | + | chr6.3:37099961-37099980 | None:intergenic | 35.0% | |
| TACAACGAAATAGGATCCAT+GGG | + | chr6.3:37099293-37099312 | None:intergenic | 35.0% | |
| TACACTATAAGTGGTTCATG+GGG | + | chr6.3:37099138-37099157 | None:intergenic | 35.0% | |
| TACTTTGCGCAAGTTGTTTA+TGG | - | chr6.3:37099993-37100012 | MS.gene80502:intron | 35.0% | |
| TATAATAGGGTTGTATGGAC+TGG | + | chr6.3:37097873-37097892 | None:intergenic | 35.0% | |
| TATGAACCATATGAGGAAGA+CGG | + | chr6.3:37097921-37097940 | None:intergenic | 35.0% | |
| TATTATGTGTGAAGCGTACA+TGG | - | chr6.3:37099066-37099085 | MS.gene80502:intron | 35.0% | |
| TCATAGATCAGAATCAACTG+GGG | + | chr6.3:37098506-37098525 | None:intergenic | 35.0% | |
| TTACAACGAAATAGGATCCA+TGG | + | chr6.3:37099294-37099313 | None:intergenic | 35.0% | |
| ! | ATTAGCTTAGAAACCTCACA+AGG | - | chr6.3:37097957-37097976 | MS.gene80502:CDS | 35.0% |
| ! | CAATTGTCACTGATCGATTT+GGG | + | chr6.3:37098829-37098848 | None:intergenic | 35.0% |
| ! | CATTCAAAGCTGTTTGTTGA+CGG | + | chr6.3:37098732-37098751 | None:intergenic | 35.0% |
| ! | GTTAGTGGGACATTTGAAAT+GGG | + | chr6.3:37098417-37098436 | None:intergenic | 35.0% |
| !! | ATCGATTTGGGAACAAAACT+AGG | + | chr6.3:37098817-37098836 | None:intergenic | 35.0% |
| !! | ATTTTAAAGGTTGCAGCAGA+AGG | + | chr6.3:37099007-37099026 | None:intergenic | 35.0% |
| !! | CACAAGAAGTGCCAAAAATA+AGG | - | chr6.3:37099653-37099672 | MS.gene80502:intron | 35.0% |
| !!! | TTGGGAATCACTTTGTTTTG+AGG | + | chr6.3:37099738-37099757 | None:intergenic | 35.0% |
| AATAGGAACTTCAGGCAACA+TGG | - | chr6.3:37098138-37098157 | MS.gene80502:CDS | 40.0% | |
| ACTGCTTTAGTGAAATCCGA+CGG | + | chr6.3:37098559-37098578 | None:intergenic | 40.0% | |
| AGAGGATCTTTCAGTTGACA+AGG | - | chr6.3:37101042-37101061 | MS.gene80502:intron | 40.0% | |
| AGATAAGACTTACAACACCC+TGG | + | chr6.3:37098912-37098931 | None:intergenic | 40.0% | |
| AGATATGACAATGACAGTGC+CGG | - | chr6.3:37100938-37100957 | MS.gene80502:intron | 40.0% | |
| AGCTGCAAATGGTGAATTTG+TGG | - | chr6.3:37101256-37101275 | MS.gene80502:CDS | 40.0% | |
| ATAGGAACTTCAGGCAACAT+GGG | - | chr6.3:37098139-37098158 | MS.gene80502:CDS | 40.0% | |
| CATAGATCAGAATCAACTGG+GGG | + | chr6.3:37098505-37098524 | None:intergenic | 40.0% | |
| CCAAATACACCTACTTAGGA+AGG | - | chr6.3:37098436-37098455 | MS.gene80502:intron | 40.0% | |
| CCTTCCTAAGTAGGTGTATT+TGG | + | chr6.3:37098439-37098458 | None:intergenic | 40.0% | |
| CTATGGTCACAACTGGATTT+CGG | - | chr6.3:37098379-37098398 | MS.gene80502:intron | 40.0% | |
| CTCTCTTGCTTCTCTTACTT+GGG | + | chr6.3:37101238-37101257 | None:intergenic | 40.0% | |
| CTGCTGGAGAAACAATAAAG+TGG | - | chr6.3:37101081-37101100 | MS.gene80502:intron | 40.0% | |
| GACAATGAGCCTTAACGTAT+AGG | + | chr6.3:37097849-37097868 | None:intergenic | 40.0% | |
| GAGGATCTTTCAGTTGACAA+GGG | - | chr6.3:37101043-37101062 | MS.gene80502:intron | 40.0% | |
| GAGGCAGAAAACAATTCAGA+AGG | + | chr6.3:37100706-37100725 | None:intergenic | 40.0% | |
| GATAAGTCTTCATTGTGCCA+TGG | - | chr6.3:37097820-37097839 | MS.gene80502:CDS | 40.0% | |
| GATAATTGTCCTACATGGAG+AGG | - | chr6.3:37099323-37099342 | MS.gene80502:intron | 40.0% | |
| GGTAACTACTATGACACTCA+AGG | + | chr6.3:37098685-37098704 | None:intergenic | 40.0% | |
| GGTTAGTGGGACATTTGAAA+TGG | + | chr6.3:37098418-37098437 | None:intergenic | 40.0% | |
| GGTTGAGTTTAAACCTTGTG+AGG | + | chr6.3:37097973-37097992 | None:intergenic | 40.0% | |
| TAGTGAACTATGGTCACAAC+TGG | - | chr6.3:37098372-37098391 | MS.gene80502:intron | 40.0% | |
| TCTCTTGCTTCTCTTACTTG+GGG | + | chr6.3:37101237-37101256 | None:intergenic | 40.0% | |
| TGAGGCTTCATCTCCAAAAT+AGG | - | chr6.3:37098121-37098140 | MS.gene80502:CDS | 40.0% | |
| ! | ATGAAGAGTACATCAACCCA+TGG | - | chr6.3:37099274-37099293 | MS.gene80502:intron | 40.0% |
| ! | ATGACAATCTAGAATAGCGG+TGG | + | chr6.3:37098768-37098787 | None:intergenic | 40.0% |
| ! | GTTGCCTGAAGTTCCTATTT+TGG | + | chr6.3:37098137-37098156 | None:intergenic | 40.0% |
| ! | GTTTGAGGTTCCAACATCAT+CGG | - | chr6.3:37101187-37101206 | MS.gene80502:intron | 40.0% |
| ! | TAAGGTGATTTGTCGTCAGT+CGG | - | chr6.3:37098294-37098313 | MS.gene80502:intron | 40.0% |
| ! | TGTCTTGAAATTTTGCGACG+TGG | + | chr6.3:37098943-37098962 | None:intergenic | 40.0% |
| ! | TTAGAGACCCCGGATTTTAA+AGG | + | chr6.3:37099020-37099039 | None:intergenic | 40.0% |
| ! | TTTTAACAGCCTCTCCATGT+AGG | + | chr6.3:37099335-37099354 | None:intergenic | 40.0% |
| !! | CTGCTGCAACCTTTAAAATC+CGG | - | chr6.3:37099008-37099027 | MS.gene80502:intron | 40.0% |
| !! | TGCTGCAACCTTTAAAATCC+GGG | - | chr6.3:37099009-37099028 | MS.gene80502:intron | 40.0% |
| AACCTCTACATATCTGCCGT+CGG | - | chr6.3:37098540-37098559 | MS.gene80502:intron | 45.0% | |
| AGAAGCAAGAGAGCTGCAAA+TGG | - | chr6.3:37101245-37101264 | MS.gene80502:CDS | 45.0% | |
| AGATCGTCCATCTGCTAATG+AGG | - | chr6.3:37098103-37098122 | MS.gene80502:CDS | 45.0% | |
| ATCAAAAGACCGTCGCAAGA+AGG | - | chr6.3:37100974-37100993 | MS.gene80502:intron | 45.0% | |
| CACCTACTTAGGAAGGGTTA+CGG | - | chr6.3:37098443-37098462 | MS.gene80502:intron | 45.0% | |
| CATTAGCAGATGGACGATCT+AGG | + | chr6.3:37098103-37098122 | None:intergenic | 45.0% | |
| CTTAACCCGTGAGCATGTTT+GGG | + | chr6.3:37099756-37099775 | None:intergenic | 45.0% | |
| CTTGAAGAAAGCTCGATCGT+AGG | - | chr6.3:37100555-37100574 | MS.gene80502:intron | 45.0% | |
| GATGAAGCCTCATTAGCAGA+TGG | + | chr6.3:37098113-37098132 | None:intergenic | 45.0% | |
| GCTCTCTTGCTTCTCTTACT+TGG | + | chr6.3:37101239-37101258 | None:intergenic | 45.0% | |
| GGAACAAAACTAGGATGACG+TGG | + | chr6.3:37098808-37098827 | None:intergenic | 45.0% | |
| GTGATTCCCAAACATGCTCA+CGG | - | chr6.3:37099747-37099766 | MS.gene80502:intron | 45.0% | |
| TACTTAGGAAGGGTTACGGA+AGG | - | chr6.3:37098447-37098466 | MS.gene80502:intron | 45.0% | |
| TAGTAGTGTCAGAGGAAGGA+AGG | - | chr6.3:37101165-37101184 | MS.gene80502:intron | 45.0% | |
| TCCTTCCTCTGACACTACTA+TGG | + | chr6.3:37101165-37101184 | None:intergenic | 45.0% | |
| TGATTCCCAAACATGCTCAC+GGG | - | chr6.3:37099748-37099767 | MS.gene80502:intron | 45.0% | |
| TTCCGTAACCCTTCCTAAGT+AGG | + | chr6.3:37098448-37098467 | None:intergenic | 45.0% | |
| TTTCAGTTGACAAGGGAGCT+TGG | - | chr6.3:37101050-37101069 | MS.gene80502:intron | 45.0% | |
| ! | AGGAGAGGTGATTTGCGATA+TGG | + | chr6.3:37098043-37098062 | None:intergenic | 45.0% |
| ! | GGAGAGGTGATTTGCGATAT+GGG | + | chr6.3:37098042-37098061 | None:intergenic | 45.0% |
| ! | TTCTTGCGACGGTCTTTTGA+TGG | + | chr6.3:37100975-37100994 | None:intergenic | 45.0% |
| ! | TTGGGGTCTACTGTGTGTTT+TGG | + | chr6.3:37100728-37100747 | None:intergenic | 45.0% |
| ! | TTTGATGGTTTCTTCGCTGC+CGG | + | chr6.3:37100960-37100979 | None:intergenic | 45.0% |
| !! | GCTGCAACCTTTAAAATCCG+GGG | - | chr6.3:37099010-37099029 | MS.gene80502:intron | 45.0% |
| !!! | AAAAAAAATATATTTTACAT+GGG | - | chr6.3:37100532-37100551 | MS.gene80502:intron | 5.0% |
| !!! | TAAAAAAAATATATTTTACA+TGG | - | chr6.3:37100531-37100550 | MS.gene80502:intron | 5.0% |
| !!! | TATATTTTTTTTAATATGTT+TGG | + | chr6.3:37100524-37100543 | None:intergenic | 5.0% |
| !!! | TATTTATTAATTTTTGTTTA+GGG | - | chr6.3:37100823-37100842 | MS.gene80502:intron | 5.0% |
| !!! | TTATTTATTAATTTTTGTTT+AGG | - | chr6.3:37100822-37100841 | MS.gene80502:intron | 5.0% |
| !!! | TTTTAAATTTACATTTTTTT+TGG | + | chr6.3:37100433-37100452 | None:intergenic | 5.0% |
| AAAAGACCGTCGCAAGAAGG+TGG | - | chr6.3:37100977-37100996 | MS.gene80502:intron | 50.0% | |
| AGATCAGAATCAACTGGGGG+AGG | + | chr6.3:37098502-37098521 | None:intergenic | 50.0% | |
| ATATGTGTGCCCTGTCGCAT+AGG | - | chr6.3:37098472-37098491 | MS.gene80502:intron | 50.0% | |
| ATCCGACGGCAGATATGTAG+AGG | + | chr6.3:37098545-37098564 | None:intergenic | 50.0% | |
| ATCCTCTCTGCGCATGTTGT+CGG | + | chr6.3:37101029-37101048 | None:intergenic | 50.0% | |
| ATGTGATCATACCATGGGCG+TGG | + | chr6.3:37098618-37098637 | None:intergenic | 50.0% | |
| CCATGGAGCCCTATACGTTA+AGG | - | chr6.3:37097837-37097856 | MS.gene80502:CDS | 50.0% | |
| CCTTAACGTATAGGGCTCCA+TGG | + | chr6.3:37097840-37097859 | None:intergenic | 50.0% | |
| GAACCATATGAGGAAGACGG+AGG | + | chr6.3:37097918-37097937 | None:intergenic | 50.0% | |
| GAATAGCGGTGGAAGAGCTT+TGG | + | chr6.3:37098757-37098776 | None:intergenic | 50.0% | |
| GCCATAGTAGTGTCAGAGGA+AGG | - | chr6.3:37101161-37101180 | MS.gene80502:intron | 50.0% | |
| GCTTAACCCGTGAGCATGTT+TGG | + | chr6.3:37099757-37099776 | None:intergenic | 50.0% | |
| GGGAGCAAGTGCAAATACGA+TGG | + | chr6.3:37098022-37098041 | None:intergenic | 50.0% | |
| GTCAGAGGAAGGAAGGTTTG+AGG | - | chr6.3:37101172-37101191 | MS.gene80502:intron | 50.0% | |
| TCACCTCCGTCTTCCTCATA+TGG | - | chr6.3:37097912-37097931 | MS.gene80502:CDS | 50.0% | |
| TCCTCTGACACTACTATGGC+CGG | + | chr6.3:37101161-37101180 | None:intergenic | 50.0% | |
| TGAAAATGGGCCAGACCAAC+CGG | + | chr6.3:37100583-37100602 | None:intergenic | 50.0% | |
| TGAGGTTCCAACATCATCGG+CGG | - | chr6.3:37101190-37101209 | MS.gene80502:intron | 50.0% | |
| TGTCTCCGTTGATATCCACG+AGG | + | chr6.3:37098320-37098339 | None:intergenic | 50.0% | |
| !! | GGGTCTACTGTGTGTTTTGG+AGG | + | chr6.3:37100725-37100744 | None:intergenic | 50.0% |
| ATCATTGAAGCCACCGGCAC+TGG | - | chr6.3:37101128-37101147 | MS.gene80502:intron | 55.0% | |
| CCTGCGATCATTGAAGCCAC+CGG | - | chr6.3:37101122-37101141 | MS.gene80502:intron | 55.0% | |
| GAAAGCTCGATCGTAGGCTC+CGG | - | chr6.3:37100561-37100580 | MS.gene80502:intron | 55.0% | |
| GAGCTTGGTCACAAGTCTGC+TGG | - | chr6.3:37101065-37101084 | MS.gene80502:intron | 55.0% | |
| GTCGGCCTCGTGGATATCAA+CGG | - | chr6.3:37098312-37098331 | MS.gene80502:intron | 55.0% | |
| GTTGTCGGCAGTGTGACTCT+CGG | + | chr6.3:37101014-37101033 | None:intergenic | 55.0% | |
| TCCGGCCATAGTAGTGTCAG+AGG | - | chr6.3:37101157-37101176 | MS.gene80502:intron | 55.0% | |
| ! | CACCGGCACTGGAATAACTC+CGG | - | chr6.3:37101139-37101158 | MS.gene80502:intron | 55.0% |
| ! | TTCTCTTACTTGGGGCGCCT+TGG | + | chr6.3:37101229-37101248 | None:intergenic | 55.0% |
| !! | GGAGGTGTTCCTATGCGACA+GGG | + | chr6.3:37098484-37098503 | None:intergenic | 55.0% |
| AGACCGTCGCAAGAAGGTGG+AGG | - | chr6.3:37100980-37100999 | MS.gene80502:intron | 60.0% | |
| ATCATACCATGGGCGTGGCG+TGG | + | chr6.3:37098613-37098632 | None:intergenic | 60.0% | |
| CCGGTGGCTTCAATGATCGC+AGG | + | chr6.3:37101125-37101144 | None:intergenic | 60.0% | |
| GACCGTCGCAAGAAGGTGGA+GGG | - | chr6.3:37100981-37101000 | MS.gene80502:intron | 60.0% | |
| GCGGCAAGACCAAACGACCA+AGG | - | chr6.3:37101209-37101228 | MS.gene80502:intron | 60.0% | |
| GGCCGGAGTTATTCCAGTGC+CGG | + | chr6.3:37101144-37101163 | None:intergenic | 60.0% | |
| GGTCTTGCCGCCGATGATGT+TGG | + | chr6.3:37101200-37101219 | None:intergenic | 60.0% | |
| GTCCCTCCACCTTCTTGCGA+CGG | + | chr6.3:37100986-37101005 | None:intergenic | 60.0% | |
| TGCCGACAACATGCGCAGAG+AGG | - | chr6.3:37101024-37101043 | MS.gene80502:intron | 60.0% | |
| TTTGTCGTCAGTCGGCCTCG+TGG | - | chr6.3:37098302-37098321 | MS.gene80502:intron | 60.0% | |
| ! | ATCGTAGGCTCCGGTTGGTC+TGG | - | chr6.3:37100570-37100589 | MS.gene80502:intron | 60.0% |
| ! | CGGAGTTATTCCAGTGCCGG+TGG | + | chr6.3:37101141-37101160 | None:intergenic | 60.0% |
| !! | GGGAGGTGTTCCTATGCGAC+AGG | + | chr6.3:37098485-37098504 | None:intergenic | 60.0% |
| GCTCGATCGTAGGCTCCGGT+TGG | - | chr6.3:37100565-37100584 | MS.gene80502:intron | 65.0% | |
| ! | CTTGGGGCGCCTTGGTCGTT+TGG | + | chr6.3:37101221-37101240 | None:intergenic | 65.0% |
| GTGGCTCCACGCCACGCCCA+TGG | - | chr6.3:37098604-37098623 | MS.gene80502:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37097814 | 37101310 | 37097814 | ID=MS.gene80502 |
| chr6.3 | mRNA | 37097814 | 37101310 | 37097814 | ID=MS.gene80502.t1;Parent=MS.gene80502 |
| chr6.3 | exon | 37101222 | 37101310 | 37101222 | ID=MS.gene80502.t1.exon1;Parent=MS.gene80502.t1 |
| chr6.3 | CDS | 37101222 | 37101310 | 37101222 | ID=cds.MS.gene80502.t1;Parent=MS.gene80502.t1 |
| chr6.3 | exon | 37097814 | 37098219 | 37097814 | ID=MS.gene80502.t1.exon2;Parent=MS.gene80502.t1 |
| chr6.3 | CDS | 37097814 | 37098219 | 37097814 | ID=cds.MS.gene80502.t1;Parent=MS.gene80502.t1 |
| Gene Sequence |
| Protein sequence |
