AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80506

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80506.t1 MTR_6g043060 70.470 298 58 2 1 268 30 327 5.78e-150 422
MS.gene80506.t1 MTR_8g083100 74.627 268 24 1 1 224 30 297 2.35e-139 401
MS.gene80506.t1 MTR_8g083100 80.952 42 8 0 229 270 416 457 2.51e-15 75.9
MS.gene80506.t1 MTR_6g044340 63.672 256 69 2 39 270 8 263 4.78e-109 316
MS.gene80506.t1 MTR_2g100680 59.259 270 65 2 1 225 39 308 1.80e-104 311
MS.gene80506.t1 MTR_2g100670 55.336 253 85 4 1 225 41 293 1.68e-85 258
MS.gene80506.t1 MTR_2g100670 55.336 253 85 4 1 225 149 401 7.78e-84 257
MS.gene80506.t1 MTR_5g029680 49.261 203 89 4 1 189 40 242 9.07e-59 195
MS.gene80506.t1 MTR_6g044430 46.429 252 47 5 71 270 14 229 5.05e-55 177
MS.gene80506.t1 MTR_8g087540 41.155 277 140 7 1 264 20 286 3.23e-53 177
MS.gene80506.t1 MTR_6g044440 54.190 179 29 2 145 270 1 179 2.08e-52 169
MS.gene80506.t1 MTR_4g077970 43.719 199 100 3 1 187 20 218 1.78e-49 170
MS.gene80506.t1 MTR_3g104550 33.218 289 171 6 1 268 54 341 4.15e-45 156
MS.gene80506.t1 MTR_7g095680 44.388 196 99 4 1 186 57 252 5.07e-45 155
MS.gene80506.t1 MTR_1g102860 43.077 195 99 5 1 186 48 239 1.51e-44 153
MS.gene80506.t1 MTR_1g061170 39.474 190 112 2 1 187 57 246 6.09e-42 149
MS.gene80506.t1 MTR_1g071360 39.234 209 115 3 1 204 40 241 1.02e-41 146
MS.gene80506.t1 MTR_1g071360 39.234 209 115 3 1 204 37 238 1.60e-41 146
MS.gene80506.t1 MTR_8g105780 38.163 283 144 11 1 264 30 300 5.75e-40 142
MS.gene80506.t1 MTR_6g044350 54.795 146 32 3 145 256 1 146 1.07e-39 135
MS.gene80506.t1 MTR_3g101870 71.429 84 24 0 1 84 32 115 5.26e-39 140
MS.gene80506.t1 MTR_6g086805 39.216 204 97 2 1 190 19 209 9.51e-37 133
MS.gene80506.t1 MTR_5g017470 61.290 93 36 0 1 93 17 109 1.03e-36 132
MS.gene80506.t1 MTR_5g089170 67.857 84 27 0 1 84 33 116 2.40e-36 130
MS.gene80506.t1 MTR_5g010680 65.476 84 29 0 1 84 32 115 3.21e-35 129
MS.gene80506.t1 MTR_2g017890 61.111 90 35 0 1 90 23 112 1.01e-34 129
MS.gene80506.t1 MTR_0020s0020 61.905 84 32 0 1 84 41 124 9.93e-33 122
MS.gene80506.t1 MTR_7g091370 56.471 85 37 0 1 85 30 114 1.17e-32 120
MS.gene80506.t1 MTR_1g100777 59.302 86 35 0 1 86 26 111 2.04e-32 121
MS.gene80506.t1 MTR_4g088900 60.526 76 30 0 9 84 53 128 2.38e-28 108
MS.gene80506.t1 MTR_5g047190 45.361 97 46 2 1 90 1 97 5.63e-22 87.8
MS.gene80506.t1 MTR_6g044510 59.259 81 24 2 198 270 9 88 9.75e-21 84.3
MS.gene80506.t1 MTR_4g045757 67.347 49 16 0 2 50 23 71 3.12e-16 72.0
MS.gene80506.t1 MTR_1g061170 30.189 159 100 4 32 187 1 151 1.52e-13 70.1
MS.gene80506.t1 MTR_6g044500 48.780 82 16 3 176 232 1 81 2.91e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80506.t1 AT4G13980 57.353 204 86 1 1 203 31 234 2.81e-80 249
MS.gene80506.t1 AT4G17750 46.635 208 90 4 1 187 60 267 1.14e-53 181
MS.gene80506.t1 AT5G16820 47.761 201 90 5 1 187 35 234 1.75e-52 178
MS.gene80506.t1 AT5G16820 47.761 201 90 5 1 187 35 234 1.75e-52 178
MS.gene80506.t1 AT1G32330 47.573 206 89 5 1 187 45 250 2.84e-52 177
MS.gene80506.t1 AT1G32330 47.573 206 89 5 1 187 45 250 3.60e-52 177
MS.gene80506.t1 AT3G02990 44.076 211 105 4 1 199 31 240 5.46e-52 176
MS.gene80506.t1 AT5G45710 37.193 285 140 9 12 266 32 307 1.38e-48 164
MS.gene80506.t1 AT5G45710 37.193 285 140 9 12 266 32 307 1.38e-48 164
MS.gene80506.t1 AT4G18880 46.409 181 87 3 17 191 39 215 8.87e-48 164
MS.gene80506.t1 AT2G26150 41.232 211 116 3 1 203 52 262 5.27e-46 157
MS.gene80506.t1 AT2G26150 41.232 211 116 3 1 203 52 262 5.27e-46 157
MS.gene80506.t1 AT3G51910 40.887 203 103 5 1 197 37 228 9.36e-43 147
MS.gene80506.t1 AT3G22830 38.537 205 113 3 1 192 69 273 2.07e-41 147
MS.gene80506.t1 AT5G03720 41.146 192 105 3 1 184 63 254 2.15e-41 147
MS.gene80506.t1 AT5G03720 41.146 192 105 3 1 184 63 254 2.15e-41 147
MS.gene80506.t1 AT3G24520 45.062 162 71 3 1 162 25 168 6.22e-40 141
MS.gene80506.t1 AT1G46264 61.165 103 30 1 1 93 42 144 8.49e-39 139
MS.gene80506.t1 AT1G67970 43.956 182 89 5 1 172 27 205 1.12e-38 139
MS.gene80506.t1 AT5G43840 41.573 178 92 3 1 176 27 194 2.00e-38 136
MS.gene80506.t1 AT5G54070 42.775 173 93 2 1 172 79 246 5.18e-36 131
MS.gene80506.t1 AT3G63350 38.095 168 103 1 1 167 36 203 1.65e-34 126
MS.gene80506.t1 AT4G11660 63.095 84 31 0 1 84 67 150 2.51e-33 125
MS.gene80506.t1 AT4G36990 59.302 86 35 0 1 86 22 107 1.54e-32 120
MS.gene80506.t1 AT2G41690 49.533 107 54 0 1 107 48 154 6.63e-32 118
MS.gene80506.t1 AT5G62020 55.056 89 40 0 1 89 31 119 3.48e-31 117
MS.gene80506.t1 AT4G18870 46.250 80 43 0 1 80 154 233 9.39e-20 87.0
MS.gene80506.t1 AT4G18870 47.500 80 41 1 1 80 21 99 8.22e-18 81.6
MS.gene80506.t1 AT2G26150 32.000 200 121 6 14 203 13 207 1.02e-16 78.6
MS.gene80506.t1 AT2G26150 32.000 200 121 6 14 203 13 207 1.02e-16 78.6
MS.gene80506.t1 AT1G77570 43.750 80 42 2 1 77 34 113 1.51e-14 69.7
MS.gene80506.t1 AT5G45710 28.182 220 119 9 77 266 1 211 1.30e-12 66.2
MS.gene80506.t1 AT5G45710 28.182 220 119 9 77 266 1 211 1.30e-12 66.2
MS.gene80506.t1 AT4G19630 34.884 86 53 1 1 83 19 104 6.70e-11 59.3

Find 63 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.3:+37027632 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 6.3:-37027465 MS.gene80506:CDS
ATAATTATAGCTTAAGAGTT+TGG 0.284728 6.3:+37027568 None:intergenic
GAAATTGCTGTGTTTGAAAT+AGG 0.299469 6.3:+37028838 None:intergenic
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.3:-37028925 MS.gene80506:CDS
CAAAATCGAATCCATGGATT+TGG 0.330894 6.3:-37027414 MS.gene80506:CDS
AAGGAGTGAATGATGTGTTT+TGG 0.360172 6.3:-37027196 MS.gene80506:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.3:-37028895 MS.gene80506:CDS
GTCTGAACAGCATGGACTTT+CGG 0.368229 6.3:+37027160 None:intergenic
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.3:+37028866 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.3:+37027242 None:intergenic
GAAGCCTCCTTTGGATCAAC+GGG 0.411360 6.3:+37027251 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.3:-37027381 MS.gene80506:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 6.3:+37027344 None:intergenic
AGCTTAAGAGTTTGGATTGA+AGG 0.419735 6.3:+37027576 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.3:-37027394 MS.gene80506:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.465666 6.3:+37027219 None:intergenic
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.3:-37027669 MS.gene80506:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.3:-37027762 MS.gene80506:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 6.3:-37027420 MS.gene80506:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.3:+37027752 None:intergenic
TTGCTGTGTTTGAAATAGGC+TGG 0.480359 6.3:+37028842 None:intergenic
GCTTAAGAGTTTGGATTGAA+GGG 0.480417 6.3:+37027577 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.3:+37027403 None:intergenic
GTTGATCCAAAGGAGGCTTC+AGG 0.485386 6.3:-37027248 MS.gene80506:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.3:-37027636 MS.gene80506:CDS
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 6.3:-37027543 MS.gene80506:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 6.3:+37028814 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.3:-37027474 MS.gene80506:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 6.3:-37027345 MS.gene80506:CDS
TTCTCTCAGAATCTTTCTGA+AGG 0.511282 6.3:-37027305 MS.gene80506:CDS
AACTGACCCCGTTGATCCAA+AGG 0.528185 6.3:-37027258 MS.gene80506:CDS
CTTTCTGAAGGAGAACTGAC+AGG 0.534056 6.3:-37027293 MS.gene80506:CDS
GTCGAAGCAGCTGCTCGGCA+AGG 0.540320 6.3:-37027215 MS.gene80506:CDS
AAGGTCAACCAAGCTACCTT+CGG 0.541708 6.3:+37027337 None:intergenic
TCTGAGAGAAATTGCTAGGA+AGG 0.542451 6.3:+37027318 None:intergenic
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.3:-37027763 MS.gene80506:CDS
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.3:-37027645 MS.gene80506:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.548536 6.3:-37027220 MS.gene80506:CDS
TGAAGCCTCCTTTGGATCAA+CGG 0.548927 6.3:+37027250 None:intergenic
TCAGCGGCGATTGGAAGGCA+TGG 0.549084 6.3:-37027513 MS.gene80506:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.3:+37027669 None:intergenic
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.3:-37027668 MS.gene80506:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.3:-37027646 MS.gene80506:CDS
AGATTCTGAGAGAAATTGCT+AGG 0.568077 6.3:+37027314 None:intergenic
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.3:+37027684 None:intergenic
TGCTGTGTTTGAAATAGGCT+GGG 0.577118 6.3:+37028843 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.3:+37028928 None:intergenic
AACAGCATGGACTTTCGGTA+AGG 0.583587 6.3:+37027165 None:intergenic
GATTGGAAGGCATGGAGAAG+AGG 0.593047 6.3:-37027505 MS.gene80506:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.3:-37027353 MS.gene80506:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.3:+37027152 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 6.3:+37028804 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.3:+37027674 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.3:+37028929 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.3:+37028869 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.3:+37028925 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.3:-37027150 MS.gene80506:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.3:+37028870 None:intergenic
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.3:+37027650 None:intergenic
TGACCCCGTTGATCCAAAGG+AGG 0.688995 6.3:-37027255 MS.gene80506:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.3:+37027653 None:intergenic
AAGCCTCCTTTGGATCAACG+GGG 0.785647 6.3:+37027252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.3:37028347-37028366 None:intergenic 10.0%
!! TTATCATATTTATATAGTTC+AGG + chr6.3:37027958-37027977 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.3:37028259-37028278 MS.gene80506:intron 15.0%
!! ATAATTATAGCTTAAGAGTT+TGG + chr6.3:37028512-37028531 None:intergenic 20.0%
!! ATATTCTTGTAGAGATTTAA+TGG - chr6.3:37028184-37028203 MS.gene80506:intron 20.0%
!! ATTATTTCATTGAGTTTAGT+TGG - chr6.3:37027534-37027553 MS.gene80506:CDS 20.0%
!! CTTTATTAAACAAAAACTTC+AGG + chr6.3:37028163-37028182 None:intergenic 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.3:37028683-37028702 MS.gene80506:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.3:37027388-37027407 MS.gene80506:CDS 20.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.3:37028099-37028118 MS.gene80506:intron 25.0%
! AATGGTAAATCGTTCAAAAT+AGG - chr6.3:37028202-37028221 MS.gene80506:intron 25.0%
! AGGATTAAACAATAAAAAGC+AGG + chr6.3:37027987-37028006 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.3:37027914-37027933 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.3:37027511-37027530 MS.gene80506:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.3:37028677-37028696 None:intergenic 25.0%
! TGATATCTAAGTCTTAGATA+GGG - chr6.3:37028071-37028090 MS.gene80506:intron 25.0%
! TGATTAGCAAGATAAGAATT+AGG - chr6.3:37027494-37027513 MS.gene80506:CDS 25.0%
! TTCAGTATAATCATATGTGT+CGG - chr6.3:37027700-37027719 MS.gene80506:CDS 25.0%
! TTGATATCTAAGTCTTAGAT+AGG - chr6.3:37028070-37028089 MS.gene80506:intron 25.0%
!! TTAGTGGATACTGATTATTA+TGG - chr6.3:37027438-37027457 MS.gene80506:CDS 25.0%
!!! TGAGATATTATAGTCTTGTA+TGG - chr6.3:37027597-37027616 MS.gene80506:CDS 25.0%
AAAAAAATTTCTGCAGCATC+TGG - chr6.3:37027851-37027870 MS.gene80506:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.3:37028363-37028382 MS.gene80506:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.3:37027182-37027201 MS.gene80506:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.3:37027947-37027966 None:intergenic 30.0%
ATCGTTCAAAATAGGTCTTA+TGG - chr6.3:37028210-37028229 MS.gene80506:intron 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.3:37027422-37027441 MS.gene80506:CDS 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.3:37027925-37027944 MS.gene80506:intron 30.0%
! GAAATTGCTGTGTTTGAAAT+AGG + chr6.3:37027242-37027261 None:intergenic 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.3:37028286-37028305 MS.gene80506:intron 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.3:37028151-37028170 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.3:37028315-37028334 MS.gene80506:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.3:37027768-37027787 None:intergenic 35.0%
AGCTTAAGAGTTTGGATTGA+AGG + chr6.3:37028504-37028523 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.3:37028663-37028682 MS.gene80506:intron 35.0%
GACATGAGAATGTTGAAAGA+TGG - chr6.3:37027573-37027592 MS.gene80506:CDS 35.0%
GCTTAAGAGTTTGGATTGAA+GGG + chr6.3:37028503-37028522 None:intergenic 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.3:37028432-37028451 MS.gene80506:intron 35.0%
TTCTCTCAGAATCTTTCTGA+AGG - chr6.3:37028772-37028791 MS.gene80506:intron 35.0%
! AAGGAGTGAATGATGTGTTT+TGG - chr6.3:37028881-37028900 MS.gene80506:CDS 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr6.3:37028663-37028682 None:intergenic 35.0%
! AGATTCTGAGAGAAATTGCT+AGG + chr6.3:37028766-37028785 None:intergenic 35.0%
! AGGAGTGAATGATGTGTTTT+GGG - chr6.3:37028882-37028901 MS.gene80506:CDS 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr6.3:37027769-37027788 MS.gene80506:CDS 35.0%
! TAGCGTGAATTGACTTACAT+AGG + chr6.3:37027290-37027309 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.3:37028603-37028622 MS.gene80506:intron 35.0%
!! GTTTACGTGTGCTTTTTATC+AGG - chr6.3:37028285-37028304 MS.gene80506:intron 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr6.3:37027775-37027794 MS.gene80506:intron 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr6.3:37027276-37027295 None:intergenic 35.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.3:37028927-37028946 MS.gene80506:CDS 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.3:37028314-37028333 MS.gene80506:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.3:37028431-37028450 MS.gene80506:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.3:37028696-37028715 MS.gene80506:intron 40.0%
TCTGAGAGAAATTGCTAGGA+AGG + chr6.3:37028762-37028781 None:intergenic 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.3:37028928-37028947 None:intergenic 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr6.3:37028662-37028681 None:intergenic 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr6.3:37027774-37027793 MS.gene80506:intron 40.0%
! TGCTGTGTTTGAAATAGGCT+GGG + chr6.3:37027237-37027256 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.3:37027800-37027819 MS.gene80506:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.3:37028548-37028567 MS.gene80506:intron 40.0%
! TTGCTGTGTTTGAAATAGGC+TGG + chr6.3:37027238-37027257 None:intergenic 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.3:37027867-37027886 MS.gene80506:intron 40.0%
AACAGCATGGACTTTCGGTA+AGG + chr6.3:37028915-37028934 None:intergenic 45.0%
AAGGTCAACCAAGCTACCTT+CGG + chr6.3:37028743-37028762 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr6.3:37028148-37028167 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.3:37027152-37027171 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.3:37027214-37027233 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.3:37027155-37027174 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.3:37027152-37027171 MS.gene80506:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr6.3:37028022-37028041 MS.gene80506:intron 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.3:37027151-37027170 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.3:37028396-37028415 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.3:37028406-37028425 None:intergenic 45.0%
GTCTGAACAGCATGGACTTT+CGG + chr6.3:37028920-37028939 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.3:37028430-37028449 None:intergenic 45.0%
TGAAGCCTCCTTTGGATCAA+CGG + chr6.3:37028830-37028849 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr6.3:37028534-37028553 MS.gene80506:intron 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr6.3:37028657-37028676 MS.gene80506:intron 45.0%
TTCGTTGTTTGTGTCGTGTC+TGG + chr6.3:37027656-37027675 None:intergenic 45.0%
TTTCTGCAGCATCTGGATCT+TGG - chr6.3:37027858-37027877 MS.gene80506:intron 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr6.3:37028612-37028631 MS.gene80506:intron 45.0%
! CTTTCTGAAGGAGAACTGAC+AGG - chr6.3:37028784-37028803 MS.gene80506:intron 45.0%
AACTGACCCCGTTGATCCAA+AGG - chr6.3:37028819-37028838 MS.gene80506:CDS 50.0%
AAGCCTCCTTTGGATCAACG+GGG + chr6.3:37028828-37028847 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.3:37028838-37028857 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.3:37027211-37027230 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.3:37028441-37028460 MS.gene80506:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.3:37028409-37028428 MS.gene80506:intron 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.3:37028408-37028427 MS.gene80506:intron 50.0%
CTACGATGCAGAAGAGAAGC+AGG + chr6.3:37028007-37028026 None:intergenic 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.3:37027210-37027229 None:intergenic 50.0%
GAAGCCTCCTTTGGATCAAC+GGG + chr6.3:37028829-37028848 None:intergenic 50.0%
GCAAGGACACTCCTCAGATT+AGG + chr6.3:37027751-37027770 None:intergenic 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.3:37027791-37027810 MS.gene80506:intron 50.0%
GTTGATCCAAAGGAGGCTTC+AGG - chr6.3:37028829-37028848 MS.gene80506:CDS 50.0%
TCCTCAGATTAGGTGTGTCC+TGG + chr6.3:37027741-37027760 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.3:37028448-37028467 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.3:37028328-37028347 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr6.3:37027266-37027285 None:intergenic 50.0%
! GATTGGAAGGCATGGAGAAG+AGG - chr6.3:37028572-37028591 MS.gene80506:intron 50.0%
! GATTTTCAGCGGCGATTGGA+AGG - chr6.3:37028559-37028578 MS.gene80506:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.3:37028555-37028574 MS.gene80506:intron 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr6.3:37027787-37027806 MS.gene80506:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.3:37028736-37028755 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr6.3:37028144-37028163 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.3:37028411-37028430 None:intergenic 55.0%
GATTAGGTGTGTCCTGGCGT+CGG + chr6.3:37027735-37027754 None:intergenic 55.0%
GCCAGGACACACCTAATCTG+AGG - chr6.3:37027737-37027756 MS.gene80506:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.3:37028427-37028446 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.3:37027790-37027809 MS.gene80506:intron 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr6.3:37028145-37028164 None:intergenic 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.3:37028857-37028876 MS.gene80506:CDS 55.0%
TGACCCCGTTGATCCAAAGG+AGG - chr6.3:37028822-37028841 MS.gene80506:CDS 55.0%
!! GAGGAGTGTCCTTGCTTCGT+AGG - chr6.3:37027756-37027775 MS.gene80506:CDS 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.3:37028724-37028743 MS.gene80506:intron 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.3:37028732-37028751 MS.gene80506:intron 60.0%
TCAGCGGCGATTGGAAGGCA+TGG - chr6.3:37028564-37028583 MS.gene80506:intron 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.3:37028861-37028880 None:intergenic 65.0%
GTCGAAGCAGCTGCTCGGCA+AGG - chr6.3:37028862-37028881 MS.gene80506:CDS 65.0%
! CGGTGTTAGACACCGACGCC+AGG - chr6.3:37027720-37027739 MS.gene80506:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 37027136 37028963 37027136 ID=MS.gene80506
chr6.3 mRNA 37027136 37028963 37027136 ID=MS.gene80506.t1;Parent=MS.gene80506
chr6.3 exon 37028808 37028963 37028808 ID=MS.gene80506.t1.exon1;Parent=MS.gene80506.t1
chr6.3 CDS 37028808 37028963 37028808 ID=cds.MS.gene80506.t1;Parent=MS.gene80506.t1
chr6.3 exon 37027136 37027792 37027136 ID=MS.gene80506.t1.exon2;Parent=MS.gene80506.t1
chr6.3 CDS 37027136 37027792 37027136 ID=cds.MS.gene80506.t1;Parent=MS.gene80506.t1
Gene Sequence

>MS.gene80506

ATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAGCCTATTTCAAACACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCACGCTATAAGCTTCTTTTGATTATTTCATTGTCACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTATTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATACTGATTATTATGGTGATCATGATCATTAAGAGATTGATGAAAAAAATGATTAGCAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCATTGAGTTTAGTTGGAGATACAAAATGTTGAGACATGAGAATGTTGAAAGATGGATGAGATATTATAGTCTTGTATGGCACTTTTATTCTATGAAACATAAAAGATAGACACCAGACACGACACAAACAACGAAACGCAAACAACGACAATGACATAATTCAGTATAATCATATGTGTCGGTGTTAGACACCGACGCCAGGACACACCTAATCTGAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAGCATCTGGATCTTGGTAATGATGGTACATCGAATTATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATAAATATGATAAGTAGTTCCTGCTTTTTATTGTTTAATCCTGCTTCTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGTCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGTTTAATAAAGAATATTCTTGTAGAGATTTAATGGTAAATCGTTCAAAATAGGTCTTATGGATGTAATGATAAATAATTGTCTAAGAATGTATGTTTTAATTTGTTACGGTTTGTTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTCTCGCAAGAAAAATGCCCTTCAATCCAAACTCTTAAGCTATAATTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGAAGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTCATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACCTTCCTAGCAATTTCTCTCAGAATCTTTCTGAAGGAGAACTGACAGGAATACAGACAAGAACTGACCCCGTTGATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCAAGGAGTGAATGATGTGTTTTGGGAACAATTCCTTACCGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene80506.t1

MVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPAYFKHSNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLSRKKNALQSKLLSYNYLETEKLQLEDFQRRLEGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLETYNKKRRLSQVDHMQPVAEGSLVDLPSNFSQNLSEGELTGIQTRTDPVDPKEASGNVQVEAAARQGVNDVFWEQFLTESPCCSDNEEEMFN