AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80508.t1 MTR_6g043060 72.256 328 77 4 1 315 1 327 4.93e-166 465
MS.gene80508.t1 MTR_8g083100 74.150 294 31 5 23 271 23 316 2.10e-143 414
MS.gene80508.t1 MTR_8g083100 79.545 44 9 0 272 315 412 455 4.26e-16 79.0
MS.gene80508.t1 MTR_2g100680 55.446 303 96 4 1 266 12 312 9.62e-106 317
MS.gene80508.t1 MTR_6g044340 60.769 260 84 4 68 315 8 261 9.59e-100 294
MS.gene80508.t1 MTR_2g100670 49.216 319 132 7 1 316 14 305 1.15e-90 273
MS.gene80508.t1 MTR_2g100670 49.216 319 132 7 1 316 122 413 8.38e-89 272
MS.gene80508.t1 MTR_5g029680 50.711 211 90 4 22 218 32 242 1.08e-62 207
MS.gene80508.t1 MTR_8g087540 37.079 356 162 9 15 313 5 355 4.80e-62 202
MS.gene80508.t1 MTR_6g044430 48.617 253 50 7 100 313 14 225 5.76e-54 176
MS.gene80508.t1 MTR_4g077970 43.421 228 116 4 20 235 10 236 1.46e-53 182
MS.gene80508.t1 MTR_6g044440 57.627 177 40 4 174 315 1 177 4.69e-52 170
MS.gene80508.t1 MTR_7g095680 46.154 208 100 5 19 215 46 252 7.06e-50 170
MS.gene80508.t1 MTR_1g102860 42.795 229 112 7 7 219 20 245 1.82e-49 168
MS.gene80508.t1 MTR_3g104550 34.211 304 188 6 19 315 43 341 7.34e-48 165
MS.gene80508.t1 MTR_1g061170 40.976 205 108 3 20 216 47 246 2.83e-46 162
MS.gene80508.t1 MTR_8g105780 48.205 195 88 6 20 201 20 214 2.09e-45 158
MS.gene80508.t1 MTR_3g101870 67.647 102 33 0 12 113 14 115 3.81e-45 157
MS.gene80508.t1 MTR_1g071360 40.639 219 110 4 22 231 32 239 9.50e-45 156
MS.gene80508.t1 MTR_1g071360 40.639 219 110 4 22 231 29 236 1.24e-44 156
MS.gene80508.t1 MTR_6g044350 55.782 147 47 3 174 303 1 146 8.50e-43 145
MS.gene80508.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 1.06e-42 149
MS.gene80508.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 2.22e-42 150
MS.gene80508.t1 MTR_5g089170 69.892 93 28 0 21 113 24 116 2.63e-42 147
MS.gene80508.t1 MTR_6g086805 41.379 203 110 4 20 217 9 207 2.73e-41 147
MS.gene80508.t1 MTR_2g017890 59.259 108 44 0 12 119 5 112 1.15e-40 146
MS.gene80508.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 2.22e-38 139
MS.gene80508.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 1.34e-37 136
MS.gene80508.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 4.88e-37 132
MS.gene80508.t1 MTR_4g088900 58.763 97 36 1 21 113 32 128 2.22e-34 125
MS.gene80508.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.32e-22 90.1
MS.gene80508.t1 MTR_4g045757 62.319 69 25 1 12 79 3 71 2.33e-21 86.7
MS.gene80508.t1 MTR_6g044510 57.895 76 24 2 246 315 13 86 2.78e-19 81.3
MS.gene80508.t1 MTR_1g061170 30.488 164 93 5 61 216 1 151 2.05e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80508.t1 AT4G13980 55.411 231 101 2 1 229 1 231 1.56e-81 255
MS.gene80508.t1 AT4G17750 48.148 216 91 4 22 216 52 267 2.71e-57 192
MS.gene80508.t1 AT1G32330 46.809 235 106 5 1 216 16 250 4.33e-57 192
MS.gene80508.t1 AT1G32330 46.809 235 106 5 1 216 16 250 4.77e-57 192
MS.gene80508.t1 AT5G16820 48.815 211 93 5 20 216 25 234 5.58e-57 191
MS.gene80508.t1 AT5G16820 48.815 211 93 5 20 216 25 234 5.58e-57 191
MS.gene80508.t1 AT3G02990 43.348 233 119 4 8 228 9 240 1.08e-56 190
MS.gene80508.t1 AT5G45710 35.604 323 165 7 14 313 5 307 2.57e-51 173
MS.gene80508.t1 AT5G45710 35.604 323 165 7 14 313 5 307 2.57e-51 173
MS.gene80508.t1 AT4G18880 49.048 210 91 4 16 216 9 211 3.22e-50 172
MS.gene80508.t1 AT2G26150 43.478 207 109 4 19 217 41 247 2.20e-47 163
MS.gene80508.t1 AT2G26150 43.478 207 109 4 19 217 41 247 2.20e-47 163
MS.gene80508.t1 AT3G22830 40.952 210 111 3 19 215 58 267 5.25e-46 161
MS.gene80508.t1 AT5G03720 42.079 202 109 3 20 213 53 254 7.57e-46 160
MS.gene80508.t1 AT5G03720 42.079 202 109 3 20 213 53 254 7.57e-46 160
MS.gene80508.t1 AT1G46264 63.393 112 31 1 21 122 33 144 1.26e-44 155
MS.gene80508.t1 AT1G67970 45.312 192 92 5 20 201 17 205 1.10e-43 154
MS.gene80508.t1 AT3G51910 40.284 211 109 5 22 226 29 228 1.26e-43 151
MS.gene80508.t1 AT3G24520 45.349 172 76 3 20 191 15 168 3.63e-43 151
MS.gene80508.t1 AT5G43840 41.711 187 97 3 21 205 18 194 8.52e-41 144
MS.gene80508.t1 AT5G54070 43.169 183 98 2 20 201 69 246 1.19e-39 142
MS.gene80508.t1 AT4G11660 62.000 100 38 0 14 113 51 150 5.76e-39 141
MS.gene80508.t1 AT3G63350 38.235 204 111 4 5 196 3 203 7.09e-39 139
MS.gene80508.t1 AT4G36990 58.095 105 44 0 11 115 3 107 1.32e-38 138
MS.gene80508.t1 AT5G62020 50.420 119 58 1 1 118 1 119 1.92e-37 135
MS.gene80508.t1 AT2G41690 52.174 115 55 0 22 136 40 154 1.84e-36 131
MS.gene80508.t1 AT4G18870 46.591 88 47 0 22 109 146 233 3.53e-22 94.7
MS.gene80508.t1 AT4G18870 45.833 96 51 1 14 109 5 99 5.03e-22 94.4
MS.gene80508.t1 AT1G77570 42.391 92 49 3 19 106 22 113 2.71e-16 75.1
MS.gene80508.t1 AT2G26150 33.333 144 88 4 82 217 49 192 5.69e-14 71.6
MS.gene80508.t1 AT2G26150 33.333 144 88 4 82 217 49 192 5.69e-14 71.6
MS.gene80508.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.58e-13 66.6

Find 72 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.3:+36951092 None:intergenic
TGCAGGCTTTCCTCATCTTC+AGG 0.204361 6.3:+36950741 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.3:+36951028 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 6.3:+36952595 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.3:-36950874 MS.gene80508:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.3:-36952682 MS.gene80508:CDS
ATAACAAAAGTTTCATCGTT+TGG 0.324279 6.3:-36952652 MS.gene80508:CDS
TAAGAAAAGGCGATTGTCTC+AGG 0.350189 6.3:-36950841 MS.gene80508:CDS
ACGGAGTGAATGATGTGTTT+TGG 0.356521 6.3:-36950602 MS.gene80508:CDS
GCAGGCTTTCCTCATCTTCA+GGG 0.373078 6.3:+36950742 None:intergenic
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.3:+36952623 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.3:+36950648 None:intergenic
ACCAAGCTACCTTCGGCAAC+AGG 0.417304 6.3:+36950804 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.3:+36951036 None:intergenic
GAAAGCCTGCAGAAAATGAT+AGG 0.440074 6.3:-36950729 MS.gene80508:CDS
TATCAAGATAATTATAGCTT+AGG 0.451761 6.3:+36951021 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.3:-36950880 MS.gene80508:CDS
GAGTTTATTTGAGATATCTT+CGG 0.461136 6.3:+36950764 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.3:-36950854 MS.gene80508:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.3:-36951129 MS.gene80508:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.3:-36951222 MS.gene80508:CDS
GCTAATCCAAAGGAGGCTTC+AGG 0.474888 6.3:-36950654 MS.gene80508:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.3:+36951212 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.3:+36951037 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.3:+36950863 None:intergenic
GCCTGTTGCCGAAGGTAGCT+TGG 0.482063 6.3:-36950805 MS.gene80508:CDS
GCCGACCAGCTGCTTCGACT+TGG 0.494630 6.3:+36950625 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.3:-36951096 MS.gene80508:CDS
TGATACAGAAAAGCTTCAGC+TGG 0.497298 6.3:-36951003 MS.gene80508:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.3:-36952747 MS.gene80508:CDS
ATTAAGCTGACGGATGAAGC+TGG 0.509640 6.3:+36952571 None:intergenic
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 6.3:+36952600 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 6.3:+36952599 None:intergenic
GTCGAAGCAGCTGGTCGGCA+CGG 0.520954 6.3:-36950621 MS.gene80508:CDS
TGGATTAACCAAGCTACCTT+CGG 0.533584 6.3:+36950797 None:intergenic
ATATCTTCGGCAATATTCCA+TGG 0.535929 6.3:+36950777 None:intergenic
TACTAATGTGGCTAATCCAA+AGG 0.539154 6.3:-36950664 MS.gene80508:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.3:-36951223 MS.gene80508:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.3:+36952722 None:intergenic
AACGTCCAAGTCGAAGCAGC+TGG 0.544012 6.3:-36950630 MS.gene80508:CDS
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.3:-36951105 MS.gene80508:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.3:-36952764 MS.gene80508:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 6.3:-36950973 MS.gene80508:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.3:+36951129 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.3:+36952757 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.3:-36952752 MS.gene80508:CDS
AAGATGCCTCAGTAATTGCT+TGG 0.558905 6.3:+36950688 None:intergenic
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.3:-36951128 MS.gene80508:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.3:-36951106 MS.gene80508:CDS
AAGGTAGCTTGGTTAATCCA+TGG 0.568191 6.3:-36950794 MS.gene80508:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.3:+36951144 None:intergenic
AAATAAACTCCCTGAAGATG+AGG 0.580535 6.3:-36950751 MS.gene80508:CDS
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.3:+36952685 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.3:-36950965 MS.gene80508:CDS
AAGAAAAGGCGATTGTCTCA+GGG 0.595644 6.3:-36950840 MS.gene80508:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.3:-36950813 MS.gene80508:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.3:+36950558 None:intergenic
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.3:+36952773 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.3:+36951134 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.3:+36952748 None:intergenic
TTACATAGGTATTAAGCTGA+CGG 0.626576 6.3:+36952561 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.3:+36952686 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.3:+36952626 None:intergenic
TCCAAGTCGAAGCAGCTGGT+CGG 0.631686 6.3:-36950626 MS.gene80508:CDS
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.3:+36952682 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.3:-36950556 MS.gene80508:CDS
TAATGTGGCTAATCCAAAGG+AGG 0.646897 6.3:-36950661 MS.gene80508:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.3:+36952627 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.3:-36952717 MS.gene80508:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.3:+36951110 None:intergenic
AACTGACCAAGCAATTACTG+AGG 0.720945 6.3:-36950694 MS.gene80508:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.3:+36951113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.3:36952122-36952141 None:intergenic 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.3:36951766-36951785 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.3:36952034-36952053 MS.gene80508:intron 15.0%
!! ATATTGAATTATGTCATTGT+CGG + chr6.3:36951134-36951153 None:intergenic 20.0%
!! TATCAAGATAATTATAGCTT+AGG + chr6.3:36952294-36952313 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.3:36950972-36950991 MS.gene80508:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.3:36952458-36952477 MS.gene80508:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.3:36951405-36951424 None:intergenic 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.3:36951542-36951561 MS.gene80508:intron 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.3:36951543-36951562 MS.gene80508:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.3:36950866-36950885 MS.gene80508:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.3:36951985-36952004 MS.gene80508:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.3:36951867-36951886 MS.gene80508:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.3:36951977-36951996 MS.gene80508:intron 25.0%
! ATAACAAAAGTTTCATCGTT+TGG - chr6.3:36950660-36950679 MS.gene80508:CDS 25.0%
! ATAATCATATATGTCGTTGT+CGG - chr6.3:36951152-36951171 MS.gene80508:CDS 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.3:36952287-36952306 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.3:36951361-36951380 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.3:36950989-36951008 MS.gene80508:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.3:36952452-36952471 None:intergenic 25.0%
! GAACACATTTCATATACTTT+AGG + chr6.3:36951434-36951453 None:intergenic 25.0%
! TGAGAAATTATAGTGTTGTA+TGG - chr6.3:36951075-36951094 MS.gene80508:CDS 25.0%
! TGATATCTAAGTCATAGATA+GGG - chr6.3:36951839-36951858 MS.gene80508:intron 25.0%
! TTGATATCTAAGTCATAGAT+AGG - chr6.3:36951838-36951857 MS.gene80508:intron 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG + chr6.3:36950720-36950739 None:intergenic 25.0%
!! GAGTTTATTTGAGATATCTT+CGG + chr6.3:36952551-36952570 None:intergenic 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.3:36951298-36951317 MS.gene80508:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.3:36952138-36952157 MS.gene80508:intron 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.3:36951394-36951413 None:intergenic 30.0%
ATTATTGCACTGAGTTTAGT+TGG - chr6.3:36951012-36951031 MS.gene80508:CDS 30.0%
CTTCATCGAAATTCAATTAG+TGG - chr6.3:36950900-36950919 MS.gene80508:CDS 30.0%
TAATTCAGGGACAAAATTGA+TGG - chr6.3:36951592-36951611 MS.gene80508:intron 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.3:36951372-36951391 MS.gene80508:intron 30.0%
TGAGATAGGATGATAATTCA+GGG - chr6.3:36951579-36951598 MS.gene80508:intron 30.0%
TTACATAGGTATTAAGCTGA+CGG + chr6.3:36950754-36950773 None:intergenic 30.0%
TTATAGACGCAGTTTCTAAT+TGG + chr6.3:36951728-36951747 None:intergenic 30.0%
TTGAGATAGGATGATAATTC+AGG - chr6.3:36951578-36951597 MS.gene80508:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr6.3:36951658-36951677 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.3:36950768-36950787 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.3:36951548-36951567 MS.gene80508:intron 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG + chr6.3:36950715-36950734 None:intergenic 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.3:36951547-36951566 MS.gene80508:intron 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG + chr6.3:36950716-36950735 None:intergenic 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.3:36951221-36951240 MS.gene80508:CDS 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.3:36951919-36951938 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.3:36952090-36952109 MS.gene80508:intron 35.0%
AAATAAACTCCCTGAAGATG+AGG - chr6.3:36952561-36952580 MS.gene80508:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.3:36951214-36951233 None:intergenic 35.0%
ATATCTTCGGCAATATTCCA+TGG + chr6.3:36952538-36952557 None:intergenic 35.0%
ATCCATCTTTCAACATTCTC+AGG + chr6.3:36951056-36951075 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.3:36952438-36952457 MS.gene80508:intron 35.0%
CTTCATTACGCAAAAACTTC+AGG + chr6.3:36951931-36951950 None:intergenic 35.0%
TACTAATGTGGCTAATCCAA+AGG - chr6.3:36952648-36952667 MS.gene80508:CDS 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.3:36952207-36952226 MS.gene80508:intron 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.3:36952438-36952457 None:intergenic 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.3:36952437-36952456 None:intergenic 35.0%
! ATTTACGTGTGCTTTTCATC+AGG - chr6.3:36952060-36952079 MS.gene80508:intron 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.3:36951215-36951234 MS.gene80508:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr6.3:36951565-36951584 MS.gene80508:intron 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.3:36950593-36950612 None:intergenic 35.0%
! TTTACGTGTGCTTTTCATCA+GGG - chr6.3:36952061-36952080 MS.gene80508:intron 35.0%
!! TGAGGCATCTTTTACTAATG+TGG - chr6.3:36952636-36952655 MS.gene80508:CDS 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.3:36951220-36951239 MS.gene80508:CDS 35.0%
AACTGACCAAGCAATTACTG+AGG - chr6.3:36952618-36952637 MS.gene80508:CDS 40.0%
AAGAAAAGGCGATTGTCTCA+GGG - chr6.3:36952472-36952491 MS.gene80508:intron 40.0%
AAGATGCCTCAGTAATTGCT+TGG + chr6.3:36952627-36952646 None:intergenic 40.0%
AAGGTAGCTTGGTTAATCCA+TGG - chr6.3:36952518-36952537 MS.gene80508:intron 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.3:36952279-36952298 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.3:36952756-36952775 MS.gene80508:CDS 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr6.3:36951645-36951664 None:intergenic 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.3:36952089-36952108 MS.gene80508:intron 40.0%
GAAAGCCTGCAGAAAATGAT+AGG - chr6.3:36952583-36952602 MS.gene80508:CDS 40.0%
GACCTGAGAATGTTGAAAGA+TGG - chr6.3:36951051-36951070 MS.gene80508:CDS 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.3:36952278-36952297 None:intergenic 40.0%
GTTCACGAATGTGTCATGAA+CGG - chr6.3:36951695-36951714 MS.gene80508:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.3:36952206-36952225 MS.gene80508:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.3:36952471-36952490 MS.gene80508:intron 40.0%
TAATGTGGCTAATCCAAAGG+AGG - chr6.3:36952651-36952670 MS.gene80508:CDS 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.3:36950595-36950614 MS.gene80508:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.3:36952757-36952776 None:intergenic 40.0%
TGATACAGAAAAGCTTCAGC+TGG - chr6.3:36952309-36952328 MS.gene80508:intron 40.0%
TGGATTAACCAAGCTACCTT+CGG + chr6.3:36952518-36952537 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.3:36952432-36952451 MS.gene80508:intron 40.0%
! ACGGAGTGAATGATGTGTTT+TGG - chr6.3:36952710-36952729 MS.gene80508:CDS 40.0%
! CGGAGTGAATGATGTGTTTT+GGG - chr6.3:36952711-36952730 MS.gene80508:CDS 40.0%
! GCATTCCTATCATTTTCTGC+AGG + chr6.3:36952591-36952610 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.3:36951246-36951265 MS.gene80508:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.3:36952323-36952342 MS.gene80508:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr6.3:36951643-36951662 MS.gene80508:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.3:36951314-36951333 MS.gene80508:intron 40.0%
ACTTCAGGAAGCAAATCTGG+TGG + chr6.3:36951916-36951935 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.3:36950630-36950649 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.3:36950692-36950711 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.3:36950633-36950652 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.3:36950630-36950649 MS.gene80508:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.3:36951790-36951809 MS.gene80508:intron 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.3:36950629-36950648 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.3:36952171-36952190 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.3:36952181-36952200 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.3:36952205-36952224 None:intergenic 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.3:36951305-36951324 MS.gene80508:intron 45.0%
! ATTAAGCTGACGGATGAAGC+TGG + chr6.3:36950744-36950763 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTCA+TGG + chr6.3:36951187-36951206 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.3:36951233-36951252 MS.gene80508:CDS 45.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.3:36952667-36952686 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.3:36950689-36950708 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.3:36952216-36952235 MS.gene80508:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.3:36952184-36952203 MS.gene80508:intron 50.0%
CAGGAAGCAAATCTGGTGGT+GGG + chr6.3:36951912-36951931 None:intergenic 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.3:36950567-36950586 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.3:36952183-36952202 MS.gene80508:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.3:36950688-36950707 None:intergenic 50.0%
GATTAGGTGTGTCATGGCGT+CGG + chr6.3:36951181-36951200 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.3:36952347-36952366 MS.gene80508:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.3:36951197-36951216 None:intergenic 50.0%
GCAGGCTTTCCTCATCTTCA+GGG + chr6.3:36952573-36952592 None:intergenic 50.0%
GCCATGACACACCTAATCCA+AGG - chr6.3:36951183-36951202 MS.gene80508:CDS 50.0%
GCTAATCCAAAGGAGGCTTC+AGG - chr6.3:36952658-36952677 MS.gene80508:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.3:36951237-36951256 MS.gene80508:intron 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.3:36951203-36951222 None:intergenic 50.0%
TCAGGAAGCAAATCTGGTGG+TGG + chr6.3:36951913-36951932 None:intergenic 50.0%
TGCAGGCTTTCCTCATCTTC+AGG + chr6.3:36952574-36952593 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.3:36952223-36952242 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.3:36952103-36952122 None:intergenic 50.0%
! AGGAAGCAAATCTGGTGGTG+GGG + chr6.3:36951911-36951930 None:intergenic 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr6.3:36952334-36952353 MS.gene80508:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.3:36952330-36952349 MS.gene80508:intron 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.3:36951202-36951221 MS.gene80508:CDS 50.0%
AACGTCCAAGTCGAAGCAGC+TGG - chr6.3:36952682-36952701 MS.gene80508:CDS 55.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.3:36952511-36952530 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.3:36952186-36952205 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.3:36950565-36950584 MS.gene80508:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.3:36952202-36952221 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.3:36951236-36951255 MS.gene80508:intron 55.0%
TCCAAGTCGAAGCAGCTGGT+CGG - chr6.3:36952686-36952705 MS.gene80508:CDS 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.3:36950542-36950561 None:intergenic 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.3:36952499-36952518 MS.gene80508:intron 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.3:36952507-36952526 MS.gene80508:intron 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr6.3:36952339-36952358 MS.gene80508:intron 60.0%
GCCGACCAGCTGCTTCGACT+TGG + chr6.3:36952690-36952709 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.3:36950560-36950579 MS.gene80508:CDS 65.0%
GTCGAAGCAGCTGGTCGGCA+CGG - chr6.3:36952691-36952710 MS.gene80508:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.3:36950548-36950567 MS.gene80508:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.3:36950558-36950577 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 36950527 36952807 36950527 ID=MS.gene80508
chr6.3 mRNA 36950527 36952807 36950527 ID=MS.gene80508.t1;Parent=MS.gene80508
chr6.3 exon 36952565 36952807 36952565 ID=MS.gene80508.t1.exon1;Parent=MS.gene80508.t1
chr6.3 CDS 36952565 36952807 36952565 ID=cds.MS.gene80508.t1;Parent=MS.gene80508.t1
chr6.3 exon 36950527 36951252 36950527 ID=MS.gene80508.t1.exon2;Parent=MS.gene80508.t1
chr6.3 CDS 36950527 36951252 36950527 ID=cds.MS.gene80508.t1;Parent=MS.gene80508.t1
Gene Sequence

>MS.gene80508

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGTTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAAATTCAATTAGTGGATACTGATTATTATGATGATCATGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTGCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTGTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACGCCATGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTACATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTTCAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTAAATTTGAGATAGGATGATAATTCAGGGACAAAATTGATGGTTTACATTCAGTGATCAAATAAACGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCATAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAACCCCACCACCAGATTTGCTTCCTGAAGTTTTTGCGTAATGAAGAATATTCTTGTAGAGATTTAATAGTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTCATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAATCTGTTTCGCGCGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGATACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGACTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGGTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCATGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGAGGAAAGCCTGCAGAAAATGATAGGAATGCAGACAAGAACTGACCAAGCAATTACTGAGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGGTCGGCACGGAGTGAATGATGTGTTTTGGGAACAATTTCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTTAGACTGAAACATGCATTCTGA
Protein sequence

>MS.gene80508.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIENLFRAKNALQSKLLSYNYLDTEKLQLEDFQRRLDGMEKRQTNLQNFFEKTLQDSFIVELLSHKIESMDLETYNKKRRLSQGDHMQPVAEGSLVNPWNIAEDISNKLPEDEESLQKMIGMQTRTDQAITEASFTNVANPKEASGNVQVEAAGRHGVNDVFWEQFLTESPCCSDNEEEMFRLKHAF