AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80513

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80513.t1 MTR_6g043060 72.289 332 76 4 1 321 1 327 7.49e-168 469
MS.gene80513.t1 MTR_8g083100 76.531 294 30 4 23 277 23 316 1.32e-151 434
MS.gene80513.t1 MTR_8g083100 57.353 68 28 1 256 323 391 457 3.76e-17 82.4
MS.gene80513.t1 MTR_2g100680 57.595 316 92 6 1 276 12 325 1.51e-113 337
MS.gene80513.t1 MTR_6g044340 61.111 270 77 3 68 323 8 263 8.86e-107 312
MS.gene80513.t1 MTR_2g100670 56.098 287 102 5 1 269 14 294 1.10e-99 296
MS.gene80513.t1 MTR_2g100670 56.098 287 102 5 1 269 122 402 8.84e-98 295
MS.gene80513.t1 MTR_8g087540 37.921 356 165 8 15 319 5 355 1.47e-65 212
MS.gene80513.t1 MTR_5g029680 51.185 211 89 4 22 218 32 242 2.41e-64 211
MS.gene80513.t1 MTR_6g044430 50.988 253 50 6 100 319 14 225 8.11e-60 191
MS.gene80513.t1 MTR_6g044440 58.564 181 42 3 174 323 1 179 4.63e-58 185
MS.gene80513.t1 MTR_4g077970 45.455 209 102 3 20 216 10 218 8.39e-55 186
MS.gene80513.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 8.46e-51 171
MS.gene80513.t1 MTR_7g095680 45.894 207 102 4 19 215 46 252 1.87e-50 171
MS.gene80513.t1 MTR_3g104550 41.905 210 116 3 19 223 43 251 2.88e-49 169
MS.gene80513.t1 MTR_1g061170 41.000 200 115 2 20 216 47 246 4.79e-47 165
MS.gene80513.t1 MTR_1g071360 43.000 200 102 3 22 216 32 224 5.74e-46 159
MS.gene80513.t1 MTR_1g071360 43.000 200 102 3 22 216 29 221 9.04e-46 159
MS.gene80513.t1 MTR_3g101870 67.647 102 33 0 12 113 14 115 2.65e-45 158
MS.gene80513.t1 MTR_8g105780 48.205 195 88 6 20 201 20 214 8.62e-45 157
MS.gene80513.t1 MTR_5g017470 62.264 106 40 0 17 122 4 109 8.07e-43 149
MS.gene80513.t1 MTR_6g086805 40.465 215 101 2 20 220 9 210 1.49e-42 150
MS.gene80513.t1 MTR_5g010680 61.111 108 42 0 6 113 8 115 1.65e-42 150
MS.gene80513.t1 MTR_5g089170 69.892 93 28 0 21 113 24 116 1.94e-42 147
MS.gene80513.t1 MTR_6g044350 54.422 147 55 2 174 309 1 146 2.81e-42 143
MS.gene80513.t1 MTR_2g017890 59.259 108 44 0 12 119 5 112 8.64e-41 146
MS.gene80513.t1 MTR_0020s0020 63.441 93 34 0 21 113 32 124 1.97e-38 139
MS.gene80513.t1 MTR_1g100777 61.053 95 37 0 21 115 17 111 1.00e-37 136
MS.gene80513.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 3.88e-37 133
MS.gene80513.t1 MTR_4g088900 58.763 97 36 1 21 113 32 128 1.98e-34 125
MS.gene80513.t1 MTR_6g044510 62.821 78 27 1 246 323 13 88 2.94e-24 94.7
MS.gene80513.t1 MTR_5g047190 46.392 97 45 2 30 119 1 97 2.48e-22 90.1
MS.gene80513.t1 MTR_4g045757 62.319 69 25 1 12 79 3 71 2.34e-21 86.7
MS.gene80513.t1 MTR_6g044500 49.333 75 27 1 205 268 1 75 2.21e-13 65.5
MS.gene80513.t1 MTR_1g061170 30.189 159 100 4 61 216 1 151 7.19e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80513.t1 AT4G13980 56.710 231 98 2 1 229 1 231 8.45e-84 261
MS.gene80513.t1 AT4G17750 43.580 257 101 6 22 236 52 306 7.50e-59 197
MS.gene80513.t1 AT1G32330 47.234 235 105 5 1 216 16 250 9.97e-59 196
MS.gene80513.t1 AT1G32330 47.234 235 105 5 1 216 16 250 1.04e-58 196
MS.gene80513.t1 AT5G16820 48.815 211 93 5 20 216 25 234 3.36e-58 195
MS.gene80513.t1 AT5G16820 48.815 211 93 5 20 216 25 234 3.36e-58 195
MS.gene80513.t1 AT3G02990 44.796 221 109 4 8 216 9 228 4.70e-57 191
MS.gene80513.t1 AT4G18880 48.571 210 98 3 16 219 9 214 1.08e-51 176
MS.gene80513.t1 AT5G45710 34.756 328 167 6 14 319 5 307 1.12e-51 174
MS.gene80513.t1 AT5G45710 34.756 328 167 6 14 319 5 307 1.12e-51 174
MS.gene80513.t1 AT2G26150 37.324 284 161 7 19 292 41 317 4.60e-49 167
MS.gene80513.t1 AT2G26150 37.324 284 161 7 19 292 41 317 4.60e-49 167
MS.gene80513.t1 AT3G22830 41.429 210 110 3 19 215 58 267 6.81e-47 163
MS.gene80513.t1 AT5G03720 42.574 202 108 3 20 213 53 254 1.19e-46 162
MS.gene80513.t1 AT5G03720 42.574 202 108 3 20 213 53 254 1.19e-46 162
MS.gene80513.t1 AT3G51910 40.758 211 108 5 22 226 29 228 5.35e-45 154
MS.gene80513.t1 AT1G46264 63.393 112 31 1 21 122 33 144 7.94e-45 156
MS.gene80513.t1 AT3G24520 45.349 172 76 3 20 191 15 168 1.28e-43 152
MS.gene80513.t1 AT1G67970 44.792 192 93 5 20 201 17 205 4.48e-43 152
MS.gene80513.t1 AT5G43840 42.246 187 96 3 21 205 18 194 2.01e-41 145
MS.gene80513.t1 AT3G63350 38.806 201 114 3 5 196 3 203 4.15e-40 142
MS.gene80513.t1 AT5G54070 43.169 183 98 2 20 201 69 246 1.07e-39 142
MS.gene80513.t1 AT4G11660 62.000 100 38 0 14 113 51 150 4.19e-39 142
MS.gene80513.t1 AT4G36990 58.095 105 44 0 11 115 3 107 1.15e-38 138
MS.gene80513.t1 AT5G62020 50.420 119 58 1 1 118 1 119 1.76e-37 135
MS.gene80513.t1 AT2G41690 52.174 115 55 0 22 136 40 154 1.78e-36 131
MS.gene80513.t1 AT4G18870 46.591 88 47 0 22 109 146 233 2.97e-22 95.1
MS.gene80513.t1 AT4G18870 45.833 96 51 1 14 109 5 99 4.35e-22 94.4
MS.gene80513.t1 AT1G77570 42.391 92 49 3 19 106 22 113 2.19e-16 75.5
MS.gene80513.t1 AT2G26150 34.028 144 87 4 82 217 49 192 3.84e-15 75.1
MS.gene80513.t1 AT2G26150 34.028 144 87 4 82 217 49 192 3.84e-15 75.1
MS.gene80513.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.76e-13 66.2

Find 73 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.3:+36909578 None:intergenic
TGCAGGCTTTCCTCATCTTC+AGG 0.204361 6.3:+36909227 None:intergenic
ATAATTATAGCTTAGGAGTT+TGG 0.257010 6.3:+36909514 None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG 0.280393 6.3:+36911085 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.3:-36909360 MS.gene80513:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.3:-36911172 MS.gene80513:CDS
ACGGAGTGAATGATGTGTTT+TGG 0.356521 6.3:-36909070 MS.gene80513:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.3:-36911142 MS.gene80513:CDS
GCAGGCTTTCCTCATCTTCA+GGG 0.373078 6.3:+36909228 None:intergenic
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.3:+36911113 None:intergenic
AGAACTGACCAAGCAATTAC+TGG 0.383163 6.3:-36909164 MS.gene80513:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.3:+36909116 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.3:-36909327 MS.gene80513:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417304 6.3:+36909290 None:intergenic
AGCTTAGGAGTTTGGATTGA+AGG 0.419735 6.3:+36909522 None:intergenic
TCTCAAGATAATTATAGCTT+AGG 0.451761 6.3:+36909507 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.3:-36909366 MS.gene80513:CDS
GAGTTTATTTGAGATATCTT+CGG 0.461136 6.3:+36909250 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.3:-36909340 MS.gene80513:CDS
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.3:-36909615 MS.gene80513:CDS
CTTTCTGACGGAGAACAGAT+AGG 0.471191 6.3:-36909197 MS.gene80513:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.471786 6.3:+36909093 None:intergenic
GCCTGTTGCCGAAGGTAGCT+TGG 0.472692 6.3:-36909291 MS.gene80513:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.3:-36909708 MS.gene80513:CDS
GCTAATCCAAAGGAGGCTTC+AGG 0.474888 6.3:-36909122 MS.gene80513:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.3:+36909698 None:intergenic
GCTTAGGAGTTTGGATTGAA+GGG 0.480417 6.3:+36909523 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.3:+36909349 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.3:-36909582 MS.gene80513:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.3:-36911237 MS.gene80513:CDS
TGAGACTGAAAAGCTTCAGC+TGG 0.500611 6.3:-36909489 MS.gene80513:CDS
ATTAAGCTGACGGATGAAGC+TGG 0.509640 6.3:+36911061 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.3:-36909420 MS.gene80513:CDS
TGTTGTGTTTGAAATAGGTT+GGG 0.510228 6.3:+36911090 None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG 0.516310 6.3:+36911089 None:intergenic
GAACTGACCAAGCAATTACT+GGG 0.527335 6.3:-36909163 MS.gene80513:CDS
TGGATTAACCAAGCTACCTT+CGG 0.533584 6.3:+36909283 None:intergenic
ATATCTTCGGCAATATTCCA+TGG 0.535929 6.3:+36909263 None:intergenic
TACTAATGTGGCTAATCCAA+AGG 0.539154 6.3:-36909132 MS.gene80513:CDS
CACATTCAGCCTGTTGCCGA+AGG 0.539797 6.3:-36909299 MS.gene80513:CDS
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.3:-36909709 MS.gene80513:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.3:+36911212 None:intergenic
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.3:-36909591 MS.gene80513:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.3:-36911254 MS.gene80513:CDS
GTCGAAGCAGCTGCTCGGCA+CGG 0.548207 6.3:-36909089 MS.gene80513:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 6.3:-36909459 MS.gene80513:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.549998 6.3:-36909094 MS.gene80513:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.3:+36909615 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.3:+36911247 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.3:-36911242 MS.gene80513:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.3:-36909614 MS.gene80513:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.3:-36909592 MS.gene80513:CDS
AAGGTAGCTTGGTTAATCCA+TGG 0.568191 6.3:-36909280 MS.gene80513:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.3:+36909630 None:intergenic
AAATAAACTCCCTGAAGATG+AGG 0.580535 6.3:-36909237 MS.gene80513:CDS
AAGATGCCCCAGTAATTGCT+TGG 0.581078 6.3:+36909156 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.3:+36911175 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.3:-36909451 MS.gene80513:CDS
GCAGCGGCTGATGATGATTG+CGG 0.591820 6.3:+36911263 None:intergenic
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.3:+36909026 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.3:+36909620 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.3:+36911238 None:intergenic
TTACATAGGTATTAAGCTGA+CGG 0.626576 6.3:+36911051 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.3:+36911176 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.3:+36911116 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.3:+36911172 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.3:-36909024 MS.gene80513:CDS
TAATGTGGCTAATCCAAAGG+AGG 0.646897 6.3:-36909129 MS.gene80513:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.3:+36911117 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.3:-36911207 MS.gene80513:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.3:+36909596 None:intergenic
AACTGACCAAGCAATTACTG+GGG 0.734160 6.3:-36909162 MS.gene80513:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.3:+36909599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.3:36910609-36910628 None:intergenic 10.0%
!!! ATGTATATTTTAATTTGTTA+CGG - chr6.3:36910521-36910540 MS.gene80513:intron 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.3:36910253-36910272 None:intergenic 15.0%
!! ATATTGAATTATGTCATTGT+CGG + chr6.3:36909617-36909636 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.3:36909455-36909474 MS.gene80513:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.3:36910945-36910964 MS.gene80513:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.3:36909888-36909907 None:intergenic 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.3:36910029-36910048 MS.gene80513:intron 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.3:36910030-36910049 MS.gene80513:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.3:36909349-36909368 MS.gene80513:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.3:36910472-36910491 MS.gene80513:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.3:36910354-36910373 MS.gene80513:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.3:36910464-36910483 MS.gene80513:intron 25.0%
! ATAATCATATATGTCGTTGT+CGG - chr6.3:36909635-36909654 MS.gene80513:CDS 25.0%
! ATAATTATAGCTTAGGAGTT+TGG + chr6.3:36910774-36910793 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.3:36909844-36909863 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.3:36909472-36909491 MS.gene80513:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.3:36910939-36910958 None:intergenic 25.0%
! ATTATTTCACTGAGTTTAGT+TGG - chr6.3:36909495-36909514 MS.gene80513:CDS 25.0%
! TCACACATTTCATATACTTT+AGG + chr6.3:36909917-36909936 None:intergenic 25.0%
! TCTCAAGATAATTATAGCTT+AGG + chr6.3:36910781-36910800 None:intergenic 25.0%
! TGATATCTAAGTCATAGATA+GGG - chr6.3:36910326-36910345 MS.gene80513:intron 25.0%
! TTGATATCTAAGTCATAGAT+AGG - chr6.3:36910325-36910344 MS.gene80513:intron 25.0%
!! GAAATTGTTGTGTTTGAAAT+AGG + chr6.3:36909203-36909222 None:intergenic 25.0%
!! GAGTTTATTTGAGATATCTT+CGG + chr6.3:36911038-36911057 None:intergenic 25.0%
!!! TGAGAAATTATAGTCTTGTA+TGG - chr6.3:36909558-36909577 MS.gene80513:CDS 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.3:36909781-36909800 MS.gene80513:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.3:36910625-36910644 MS.gene80513:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.3:36909143-36909162 MS.gene80513:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.3:36909877-36909896 None:intergenic 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.3:36909383-36909402 MS.gene80513:CDS 30.0%
CTTCATTACACAAAAACTTC+AGG + chr6.3:36910418-36910437 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr6.3:36910079-36910098 MS.gene80513:intron 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.3:36909855-36909874 MS.gene80513:intron 30.0%
TGAGATAGGATGATAATTCA+GGG - chr6.3:36910066-36910085 MS.gene80513:intron 30.0%
TTACATAGGTATTAAGCTGA+CGG + chr6.3:36909237-36909256 None:intergenic 30.0%
TTATAGACGCAGTTTCTAAT+TGG + chr6.3:36910215-36910234 None:intergenic 30.0%
TTGAGATAGGATGATAATTC+AGG - chr6.3:36910065-36910084 MS.gene80513:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr6.3:36910145-36910164 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.3:36909251-36909270 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.3:36910035-36910054 MS.gene80513:intron 30.0%
! TGTTGTGTTTGAAATAGGTT+GGG + chr6.3:36909198-36909217 None:intergenic 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.3:36910034-36910053 MS.gene80513:intron 30.0%
! TTGTTGTGTTTGAAATAGGT+TGG + chr6.3:36909199-36909218 None:intergenic 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.3:36909704-36909723 MS.gene80513:CDS 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.3:36910406-36910425 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.3:36910577-36910596 MS.gene80513:intron 35.0%
AAATAAACTCCCTGAAGATG+AGG - chr6.3:36911048-36911067 MS.gene80513:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.3:36909697-36909716 None:intergenic 35.0%
ATATCTTCGGCAATATTCCA+TGG + chr6.3:36911025-36911044 None:intergenic 35.0%
ATCCATCTTTCAACATTCTC+AGG + chr6.3:36909539-36909558 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.3:36910925-36910944 MS.gene80513:intron 35.0%
CTGCAGAAAAATCTTTCTGA+CGG - chr6.3:36911076-36911095 MS.gene80513:CDS 35.0%
TACTAATGTGGCTAATCCAA+AGG - chr6.3:36911153-36911172 MS.gene80513:CDS 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.3:36910694-36910713 MS.gene80513:intron 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.3:36910925-36910944 None:intergenic 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.3:36910924-36910943 None:intergenic 35.0%
! ATTTACGTGTGCTTTTCATC+AGG - chr6.3:36910547-36910566 MS.gene80513:intron 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.3:36909698-36909717 MS.gene80513:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr6.3:36910052-36910071 MS.gene80513:intron 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.3:36909076-36909095 None:intergenic 35.0%
! TTTACGTGTGCTTTTCATCA+GGG - chr6.3:36910548-36910567 MS.gene80513:intron 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.3:36910865-36910884 MS.gene80513:intron 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.3:36909703-36909722 MS.gene80513:CDS 35.0%
AACTGACCAAGCAATTACTG+GGG - chr6.3:36911123-36911142 MS.gene80513:CDS 40.0%
AAGGTAGCTTGGTTAATCCA+TGG - chr6.3:36911005-36911024 MS.gene80513:intron 40.0%
AGAACTGACCAAGCAATTAC+TGG - chr6.3:36911121-36911140 MS.gene80513:CDS 40.0%
AGCTTAGGAGTTTGGATTGA+AGG + chr6.3:36910766-36910785 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.3:36911261-36911280 MS.gene80513:CDS 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr6.3:36910132-36910151 None:intergenic 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.3:36910576-36910595 MS.gene80513:intron 40.0%
GAACTGACCAAGCAATTACT+GGG - chr6.3:36911122-36911141 MS.gene80513:CDS 40.0%
GACCTGAGAATGTTGAAAGA+TGG - chr6.3:36909534-36909553 MS.gene80513:CDS 40.0%
GCTTAGGAGTTTGGATTGAA+GGG + chr6.3:36910765-36910784 None:intergenic 40.0%
GTTCACGAATGTGTCATGAA+CGG - chr6.3:36910182-36910201 MS.gene80513:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.3:36910693-36910712 MS.gene80513:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.3:36910958-36910977 MS.gene80513:intron 40.0%
TAATGTGGCTAATCCAAAGG+AGG - chr6.3:36911156-36911175 MS.gene80513:CDS 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.3:36909078-36909097 MS.gene80513:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.3:36911262-36911281 None:intergenic 40.0%
TGGATTAACCAAGCTACCTT+CGG + chr6.3:36911005-36911024 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.3:36910919-36910938 MS.gene80513:intron 40.0%
! ACGGAGTGAATGATGTGTTT+TGG - chr6.3:36911215-36911234 MS.gene80513:CDS 40.0%
! CGGAGTGAATGATGTGTTTT+GGG - chr6.3:36911216-36911235 MS.gene80513:CDS 40.0%
! CGTCAGAAAGATTTTTCTGC+AGG + chr6.3:36911078-36911097 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.3:36909729-36909748 MS.gene80513:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.3:36910810-36910829 MS.gene80513:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr6.3:36910130-36910149 MS.gene80513:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.3:36909797-36909816 MS.gene80513:intron 40.0%
!! TGGGGCATCTTTTACTAATG+TGG - chr6.3:36911141-36911160 MS.gene80513:CDS 40.0%
AAGATGCCCCAGTAATTGCT+TGG + chr6.3:36911132-36911151 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+TGG + chr6.3:36910403-36910422 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.3:36909113-36909132 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.3:36909175-36909194 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.3:36909116-36909135 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.3:36909113-36909132 MS.gene80513:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.3:36910277-36910296 MS.gene80513:intron 45.0%
CTTTCTGACGGAGAACAGAT+AGG - chr6.3:36911088-36911107 MS.gene80513:CDS 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.3:36909112-36909131 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.3:36910658-36910677 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.3:36910668-36910687 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.3:36910692-36910711 None:intergenic 45.0%
TGAGACTGAAAAGCTTCAGC+TGG - chr6.3:36910796-36910815 MS.gene80513:intron 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.3:36909788-36909807 MS.gene80513:intron 45.0%
! ATTAAGCTGACGGATGAAGC+TGG + chr6.3:36909227-36909246 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTCA+TGG + chr6.3:36909670-36909689 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.3:36909716-36909735 MS.gene80513:CDS 45.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.3:36911172-36911191 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.3:36909172-36909191 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.3:36910703-36910722 MS.gene80513:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.3:36910671-36910690 MS.gene80513:intron 50.0%
CAGGAAGCAAATCTGGTGGT+GGG + chr6.3:36910399-36910418 None:intergenic 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.3:36909050-36909069 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.3:36910670-36910689 MS.gene80513:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.3:36909171-36909190 None:intergenic 50.0%
GATTAGGTGTGTCATGGCGT+CGG + chr6.3:36909664-36909683 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.3:36910834-36910853 MS.gene80513:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.3:36909680-36909699 None:intergenic 50.0%
GCAGGCTTTCCTCATCTTCA+GGG + chr6.3:36911060-36911079 None:intergenic 50.0%
GCCATGACACACCTAATCCA+AGG - chr6.3:36909666-36909685 MS.gene80513:CDS 50.0%
GCTAATCCAAAGGAGGCTTC+AGG - chr6.3:36911163-36911182 MS.gene80513:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.3:36909720-36909739 MS.gene80513:intron 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.3:36909686-36909705 None:intergenic 50.0%
TCAGGAAGCAAATCTGGTGG+TGG + chr6.3:36910400-36910419 None:intergenic 50.0%
TGCAGGCTTTCCTCATCTTC+AGG + chr6.3:36911061-36911080 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.3:36910710-36910729 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.3:36910590-36910609 None:intergenic 50.0%
! AGGAAGCAAATCTGGTGGTG+GGG + chr6.3:36910398-36910417 None:intergenic 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - chr6.3:36910821-36910840 MS.gene80513:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.3:36910817-36910836 MS.gene80513:intron 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.3:36909685-36909704 MS.gene80513:CDS 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.3:36910998-36911017 None:intergenic 55.0%
CACATTCAGCCTGTTGCCGA+AGG - chr6.3:36910986-36911005 MS.gene80513:intron 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.3:36910673-36910692 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.3:36909048-36909067 MS.gene80513:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.3:36910689-36910708 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.3:36909719-36909738 MS.gene80513:CDS 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.3:36911191-36911210 MS.gene80513:CDS 55.0%
! GCAGCGGCTGATGATGATTG+CGG + chr6.3:36909025-36909044 None:intergenic 55.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.3:36910994-36911013 MS.gene80513:intron 60.0%
TCAGCGGCGATTGGATGGCA+TGG - chr6.3:36910826-36910845 MS.gene80513:intron 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.3:36911195-36911214 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.3:36909043-36909062 MS.gene80513:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+CGG - chr6.3:36911196-36911215 MS.gene80513:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.3:36909031-36909050 MS.gene80513:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.3:36909041-36909060 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 36909010 36911297 36909010 ID=MS.gene80513
chr6.3 mRNA 36909010 36911297 36909010 ID=MS.gene80513.t1;Parent=MS.gene80513
chr6.3 exon 36911055 36911297 36911055 ID=MS.gene80513.t1.exon1;Parent=MS.gene80513.t1
chr6.3 CDS 36911055 36911297 36911055 ID=cds.MS.gene80513.t1;Parent=MS.gene80513.t1
chr6.3 exon 36909010 36909738 36909010 ID=MS.gene80513.t1.exon2;Parent=MS.gene80513.t1
chr6.3 CDS 36909010 36909738 36909010 ID=cds.MS.gene80513.t1;Parent=MS.gene80513.t1
Gene Sequence

>MS.gene80513

ATGAATTCTGCACCGCAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCGTGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTCTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACGCCATGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTACATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTGAATTCAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTAAATTTGAGATAGGATGATAATTCAGGGACTAAATTGATGGTTTACATTCAGTGATCAAATAAATGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCATAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCACCAGATTTGCTTCCTGAAGTTTTTGTGTAATGAAGAATATTCTTGTAGAGATTTAATATTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATATTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTCATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGCGAAAAATGCCCTTCAATCCAAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGTTCACATTCAGCCTGTTGCCGAAGGTAGCTTGGTTAATCCATGGAATATTGCCGAAGATATCTCAAATAAACTCCCTGAAGATGAGGAAAGCCTGCAGAAAAATCTTTCTGACGGAGAACAGATAGGAATGCAGACAAGAACTGACCAAGCAATTACTGGGGCATCTTTTACTAATGTGGCTAATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCACGGAGTGAATGATGTGTTTTGGGAACAATTTCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene80513.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRAKNALQSKLLSYNYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVVHIQPVAEGSLVNPWNIAEDISNKLPEDEESLQKNLSDGEQIGMQTRTDQAITGASFTNVANPKEASGNVQVEAAARHGVNDVFWEQFLTESPCCSDNEEEMFN