AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80652.t1 MTR_5g081860 98.529 272 3 1 6 277 1 271 0.0 560
MS.gene80652.t1 MTR_7g067080 62.150 214 72 2 8 214 11 222 2.59e-90 270
MS.gene80652.t1 MTR_5g069710 61.386 202 71 3 7 203 4 203 7.99e-85 256
MS.gene80652.t1 MTR_3g462790 61.611 211 68 4 21 220 27 235 4.28e-83 252
MS.gene80652.t1 MTR_1g111830 48.020 202 91 4 30 224 22 216 4.54e-56 181
MS.gene80652.t1 MTR_8g063600 48.634 183 92 1 25 207 3 183 8.86e-51 169
MS.gene80652.t1 MTR_4g111975 42.381 210 81 5 32 206 8 212 2.60e-47 160
MS.gene80652.t1 MTR_8g063870 46.667 180 78 3 30 207 6 169 9.01e-43 147
MS.gene80652.t1 MTR_6g092540 61.538 91 32 2 124 213 91 179 3.82e-29 112
MS.gene80652.t1 MTR_2g100930 64.634 82 27 1 125 206 104 183 6.73e-29 113
MS.gene80652.t1 MTR_4g100630 64.198 81 27 1 125 205 90 168 1.01e-27 109
MS.gene80652.t1 MTR_4g015130 65.385 78 25 1 139 216 2 77 1.71e-27 102
MS.gene80652.t1 MTR_8g101650 60.714 84 30 1 121 204 96 176 9.35e-27 105
MS.gene80652.t1 MTR_5g037080 60.000 90 34 1 117 206 89 176 9.05e-26 103
MS.gene80652.t1 MTR_4g107230 71.186 59 17 0 118 176 72 130 1.47e-24 100
MS.gene80652.t1 MTR_5g027570 49.524 105 49 1 97 197 55 159 8.51e-24 96.7
MS.gene80652.t1 MTR_1g033600 39.695 131 65 3 30 147 10 139 4.17e-23 92.4
MS.gene80652.t1 MTR_5g088010 58.904 73 29 1 126 197 56 128 5.96e-23 94.7
MS.gene80652.t1 MTR_3g104370 51.429 105 44 4 95 196 58 158 1.48e-22 93.6
MS.gene80652.t1 MTR_5g088060 58.025 81 32 2 118 197 261 340 1.19e-21 94.4
MS.gene80652.t1 MTR_5g488160 58.025 81 32 2 118 197 261 340 1.19e-21 94.4
MS.gene80652.t1 MTR_1g022290 47.191 89 43 1 27 115 2 86 2.11e-21 86.3
MS.gene80652.t1 MTR_1g033620 70.968 62 16 1 146 207 21 80 2.99e-21 90.1
MS.gene80652.t1 MTR_0036s0260 57.971 69 27 1 130 198 28 94 3.20e-20 86.7
MS.gene80652.t1 MTR_2g090305 57.971 69 27 1 130 198 28 94 9.42e-20 84.7
MS.gene80652.t1 MTR_3g111880 53.846 65 30 0 30 94 5 69 1.64e-19 81.3
MS.gene80652.t1 MTR_5g027550 44.737 114 51 2 126 238 73 175 5.49e-19 83.6
MS.gene80652.t1 MTR_6g004250 52.941 68 32 0 27 94 5 72 1.07e-18 79.0
MS.gene80652.t1 MTR_7g089210 50.685 73 36 0 36 108 16 88 5.35e-18 77.4
MS.gene80652.t1 MTR_5g075760 34.706 170 102 6 31 199 12 173 8.70e-18 80.1
MS.gene80652.t1 MTR_3g070110 40.764 157 79 6 53 201 21 171 1.29e-17 79.7
MS.gene80652.t1 MTR_3g116720 52.381 63 30 0 32 94 16 78 1.84e-17 75.5
MS.gene80652.t1 MTR_5g020170 45.333 75 41 0 20 94 7 81 5.75e-17 74.7
MS.gene80652.t1 MTR_3g013440 47.945 73 37 1 23 94 1 73 1.53e-16 73.6
MS.gene80652.t1 MTR_1g048660 53.030 66 29 1 131 196 13 76 1.87e-16 73.2
MS.gene80652.t1 MTR_5g075790 32.948 173 100 6 31 199 21 181 4.92e-16 75.5
MS.gene80652.t1 MTR_8g077360 49.231 65 32 1 30 94 3 66 2.65e-15 69.7
MS.gene80652.t1 MTR_8g077380 49.231 65 32 1 30 94 3 66 2.72e-15 69.7
MS.gene80652.t1 MTR_8g077390 49.231 65 32 1 30 94 3 66 2.72e-15 69.7
MS.gene80652.t1 MTR_8g077420 50.820 61 29 1 32 92 5 64 5.96e-14 65.9
MS.gene80652.t1 MTR_5g020540 50.820 61 29 1 32 92 4 63 2.91e-13 63.9
MS.gene80652.t1 MTR_1g083180 55.714 70 29 2 132 200 63 131 3.46e-13 67.0
MS.gene80652.t1 MTR_3g111920 41.270 63 37 0 32 94 3 65 8.97e-13 63.2
MS.gene80652.t1 MTR_6g043490 41.026 78 41 2 130 202 107 184 6.62e-12 64.3
MS.gene80652.t1 MTR_6g043480 53.191 47 22 0 130 176 107 153 7.30e-12 63.9
MS.gene80652.t1 MTR_8g072990 50.000 50 25 0 127 176 97 146 1.10e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80652.t1 AT2G38090 59.716 211 69 2 8 204 5 213 4.57e-86 259
MS.gene80652.t1 AT3G11280 64.039 203 57 5 8 201 1 196 5.29e-81 245
MS.gene80652.t1 AT3G11280 64.039 203 57 5 8 201 1 196 5.29e-81 245
MS.gene80652.t1 AT5G05790 58.605 215 80 5 8 215 4 216 9.10e-79 240
MS.gene80652.t1 AT5G05790 58.605 215 80 5 8 215 4 216 9.10e-79 240
MS.gene80652.t1 AT5G58900 57.277 213 72 4 21 216 15 225 7.91e-77 235
MS.gene80652.t1 AT5G01200 53.589 209 74 6 11 201 12 215 3.46e-66 207
MS.gene80652.t1 AT5G08520 51.630 184 79 2 32 207 12 193 1.71e-54 178
MS.gene80652.t1 AT1G49010 45.050 202 81 4 26 199 2 201 1.37e-49 166
MS.gene80652.t1 AT5G04760 44.898 196 94 5 30 222 4 188 1.37e-46 155
MS.gene80652.t1 AT5G23650 45.213 188 80 4 25 197 6 185 2.48e-43 150
MS.gene80652.t1 AT3G10580 37.981 208 98 7 32 237 8 186 4.54e-35 127
MS.gene80652.t1 AT3G10580 37.981 208 98 7 32 237 8 186 1.12e-34 127
MS.gene80652.t1 AT4G09450 41.916 167 81 4 31 197 6 156 3.18e-31 115
MS.gene80652.t1 AT5G56840 63.415 82 29 1 125 206 86 166 1.29e-27 107
MS.gene80652.t1 AT5G47390 66.250 80 25 1 117 196 83 160 1.58e-27 109
MS.gene80652.t1 AT5G61620 67.568 74 22 1 124 197 102 173 1.95e-26 105
MS.gene80652.t1 AT1G19000 51.327 113 49 3 117 225 89 199 2.14e-25 102
MS.gene80652.t1 AT1G19000 51.327 113 49 3 117 225 89 199 2.14e-25 102
MS.gene80652.t1 AT1G70000 72.131 61 17 0 117 177 85 145 7.02e-25 100
MS.gene80652.t1 AT1G70000 72.131 61 17 0 117 177 85 145 7.02e-25 100
MS.gene80652.t1 AT3G16350 57.732 97 36 2 121 214 125 219 2.68e-24 100
MS.gene80652.t1 AT3G10590 42.222 180 79 11 32 197 7 175 1.11e-22 93.2
MS.gene80652.t1 AT1G74840 75.000 52 13 0 125 176 91 142 6.62e-22 92.0
MS.gene80652.t1 AT1G74840 75.000 52 13 0 125 176 91 142 9.56e-22 92.0
MS.gene80652.t1 AT1G75250 55.556 63 28 0 32 94 12 74 6.16e-18 77.4
MS.gene80652.t1 AT1G75250 55.556 63 28 0 32 94 12 74 8.32e-18 77.8
MS.gene80652.t1 AT4G39250 48.485 66 34 0 32 97 14 79 1.50e-17 76.6
MS.gene80652.t1 AT2G21650 47.761 67 35 0 32 98 14 80 3.49e-16 72.8
MS.gene80652.t1 AT2G18328 54.098 61 27 1 34 94 14 73 4.66e-14 66.2
MS.gene80652.t1 AT1G19510 51.724 58 28 0 37 94 17 74 3.87e-13 64.7

Find 52 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCTATGCAGCAGAAAA+TGG 0.222210 5.4:+64536157 MS.gene80652:CDS
TATGCTAAGCTGAAAGTTTC+GGG 0.251091 5.4:+64536254 MS.gene80652:CDS
ACCAGGAATCGGAACATTTC+CGG 0.268577 5.4:-64535057 None:intergenic
GCCGGAAATGTTCCGATTCC+TGG 0.317971 5.4:+64535056 MS.gene80652:CDS
TTATGCTAAGCTGAAAGTTT+CGG 0.326332 5.4:+64536253 MS.gene80652:CDS
CTTCTCTACTCCATTCTGTT+TGG 0.332735 5.4:-64534884 None:intergenic
AGGAGACACATTGACTAATA+AGG 0.335368 5.4:-64536141 None:intergenic
TGATGTGATTAAGCAGTATA+GGG 0.335951 5.4:+64535004 MS.gene80652:CDS
ACATAAAATAAGGAGAATAA+AGG 0.337256 5.4:-64534830 None:intergenic
TGTGATTTAAGGTATGGATT+TGG 0.345223 5.4:+64534803 MS.gene80652:intron
AGATTCTGTATGATACTAAA+AGG 0.365142 5.4:+64534623 None:intergenic
AGAAGGCATGTGACTGTTAG+AGG 0.384719 5.4:+64535140 MS.gene80652:CDS
TTGATGTGATTAAGCAGTAT+AGG 0.386148 5.4:+64535003 MS.gene80652:CDS
AAGATTGCTGAGATGATTCC+TGG 0.391655 5.4:+64534969 MS.gene80652:CDS
TTTGTATCCAACATAAAATA+AGG 0.405866 5.4:-64534840 None:intergenic
ATAAGGCAAAAGGTTTCTTC+TGG 0.415949 5.4:+64536032 MS.gene80652:CDS
GCAATCTTAAGCCATCTATC+TGG 0.417904 5.4:-64534954 None:intergenic
TAAAGTATGGCAAAGGCGAC+TGG 0.445487 5.4:+64535937 MS.gene80652:CDS
CATAAAATAAGGAGAATAAA+GGG 0.445828 5.4:-64534829 None:intergenic
GATTAAGCAGTATAGGGAAT+TGG 0.449715 5.4:+64535010 MS.gene80652:CDS
GCATGACTTGCTACTTGTGT+TGG 0.455619 5.4:-64535996 None:intergenic
TGCTCTTGCTATATATGATA+AGG 0.457525 5.4:+64534926 MS.gene80652:CDS
ATAAGGATACACCAGATAGA+TGG 0.475384 5.4:+64534943 MS.gene80652:CDS
ATGCACAAAAGTACTACATA+AGG 0.480834 5.4:+64536015 MS.gene80652:CDS
AAGGACTTGTTGTTATCTGA+TGG 0.489147 5.4:-64536122 None:intergenic
AGAGGAAGAAAGGTGTTCCT+TGG 0.489408 5.4:+64535174 MS.gene80652:CDS
AAAGTACTACATAAGGCAAA+AGG 0.510073 5.4:+64536022 MS.gene80652:CDS
GAGGCAAGATAACCAGGAAT+CGG 0.520347 5.4:-64535068 None:intergenic
TGATGGATCACCACAAGGGC+AGG 0.524353 5.4:+64536202 MS.gene80652:CDS
TCAGCTTAGCATAAGCCTCA+TGG 0.535139 5.4:-64536244 None:intergenic
TCTCCTATGCAGCAGAAAAT+GGG 0.535185 5.4:+64536158 MS.gene80652:CDS
AGTACTAGCCACTACAATGA+TGG 0.540673 5.4:+64536185 MS.gene80652:CDS
TCTGATCATGAGAGGAAGAA+AGG 0.544690 5.4:+64535164 MS.gene80652:CDS
AAAGAAGAGGCAAGATAACC+AGG 0.552310 5.4:-64535074 None:intergenic
AAGAGAGTTACCAAACAGAA+TGG 0.556624 5.4:+64534874 MS.gene80652:CDS
AGGCAAAAGGTTTCTTCTGG+AGG 0.582472 5.4:+64536035 MS.gene80652:CDS
ACTATGATGGAAACAGAAGA+AGG 0.582942 5.4:+64535123 MS.gene80652:CDS
TCATAGAGATCCTGCCCTTG+TGG 0.585420 5.4:-64536212 None:intergenic
CTTGGACTGAAGAGGAACAT+AGG 0.585629 5.4:+64535192 MS.gene80652:CDS
CTATGTTCCTCTTCAGTCCA+AGG 0.586053 5.4:-64535191 None:intergenic
CTATGCAGCAGAAAATGGGT+TGG 0.587490 5.4:+64536162 MS.gene80652:CDS
AGGTGTTCCTTGGACTGAAG+AGG 0.592742 5.4:+64535184 MS.gene80652:CDS
GTTGTGATATCATGAATGCT+TGG 0.600782 5.4:-64536074 None:intergenic
CTATGACTGCTCTTTCCATG+AGG 0.601527 5.4:+64536229 MS.gene80652:CDS
GCTTCTAGAGACTTCAACAA+AGG 0.612158 5.4:+64536287 MS.gene80652:CDS
GATGTGAGTGAAATTGAGGC+CGG 0.613302 5.4:+64535038 MS.gene80652:CDS
TACAATGATGGATCACCACA+AGG 0.622159 5.4:+64536197 MS.gene80652:CDS
AACTTCAAAGGTGAAAGAAG+AGG 0.626616 5.4:-64535087 None:intergenic
TTAGAGGTTCTGATCATGAG+AGG 0.633143 5.4:+64535156 MS.gene80652:CDS
GTGGTGATCCATCATTGTAG+TGG 0.633599 5.4:-64536193 None:intergenic
AGAAGATGTGAGTGAAATTG+AGG 0.635385 5.4:+64535034 MS.gene80652:CDS
ACAATGATGGATCACCACAA+GGG 0.720384 5.4:+64536198 MS.gene80652:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAACCTAAAATCT+AGG - chr5.4:64535552-64535571 None:intergenic 15.0%
!!! AATAACAAGTAACTTTTAAA+AGG - chr5.4:64535727-64535746 None:intergenic 15.0%
!!! ATAACAAGTAACTTTTAAAA+GGG - chr5.4:64535726-64535745 None:intergenic 15.0%
!! ACATAAAATAAGGAGAATAA+AGG - chr5.4:64534833-64534852 None:intergenic 20.0%
!! AGTAAAAGAACAAAAAGAAA+AGG - chr5.4:64535249-64535268 None:intergenic 20.0%
!! ATTGAACTTGATTATTAGTT+TGG + chr5.4:64535744-64535763 MS.gene80652:intron 20.0%
!! CATAAAATAAGGAGAATAAA+GGG - chr5.4:64534832-64534851 None:intergenic 20.0%
!! TTTGTATCCAACATAAAATA+AGG - chr5.4:64534843-64534862 None:intergenic 20.0%
!!! ATTTTATGTTGGATACAAAT+TGG + chr5.4:64534844-64534863 MS.gene80652:CDS 20.0%
!!! TAACAAGTAACTTTTAAAAG+GGG - chr5.4:64535725-64535744 None:intergenic 20.0%
!!! TTATTCTCCTTATTTTATGT+TGG + chr5.4:64534833-64534852 MS.gene80652:CDS 20.0%
!!! TTTTTCTAGTAGTATACTAT+AGG - chr5.4:64535316-64535335 None:intergenic 20.0%
! AAATACTACTACAAAAGGTT+TGG - chr5.4:64534784-64534803 None:intergenic 25.0%
! AGAAAAATTGAAGTAAGACA+CGG + chr5.4:64535329-64535348 MS.gene80652:intron 25.0%
! AGAGACGGAAAAAATAAAAT+CGG + chr5.4:64535357-64535376 MS.gene80652:intron 25.0%
! ATCACAAATACTACTACAAA+AGG - chr5.4:64534789-64534808 None:intergenic 25.0%
! GTAGTAGTATTTGTGATTTA+AGG + chr5.4:64534792-64534811 MS.gene80652:intron 25.0%
! GTCAAAAAACAAAACTATGA+TGG + chr5.4:64535110-64535129 MS.gene80652:CDS 25.0%
! TAGCTAATGAATCATATTCA+TGG + chr5.4:64535497-64535516 MS.gene80652:intron 25.0%
!! AGTATTTGTGATTTAAGGTA+TGG + chr5.4:64534797-64534816 MS.gene80652:intron 25.0%
!! GAATCATTTTCCTAGATTTT+AGG + chr5.4:64535539-64535558 MS.gene80652:intron 25.0%
!!! ATGTTAAATTGAGTTGGTTT+AGG + chr5.4:64535817-64535836 MS.gene80652:intron 25.0%
!!! CTATAATTTCCTCTTTTTTG+TGG + chr5.4:64534738-64534757 MS.gene80652:intron 25.0%
!!! TTGTTTTTTGACAACTTCAA+AGG - chr5.4:64535102-64535121 None:intergenic 25.0%
ATCGACATGTTAAATTGAGT+TGG + chr5.4:64535811-64535830 MS.gene80652:intron 30.0%
ATTTACTCTTTGTGCATGTT+TGG + chr5.4:64535879-64535898 MS.gene80652:intron 30.0%
CATACAAAACCACAAAAAAG+AGG - chr5.4:64534750-64534769 None:intergenic 30.0%
GAAAAAACTTCCATAGAGAA+AGG - chr5.4:64535272-64535291 None:intergenic 30.0%
TGATGTGATTAAGCAGTATA+GGG + chr5.4:64535004-64535023 MS.gene80652:CDS 30.0%
TTATGCTAAGCTGAAAGTTT+CGG + chr5.4:64536253-64536272 MS.gene80652:CDS 30.0%
TTGATGTGATTAAGCAGTAT+AGG + chr5.4:64535003-64535022 MS.gene80652:CDS 30.0%
! AAAGTACTACATAAGGCAAA+AGG + chr5.4:64536022-64536041 MS.gene80652:CDS 30.0%
! TGCTCTTGCTATATATGATA+AGG + chr5.4:64534926-64534945 MS.gene80652:CDS 30.0%
! TGTGATTTAAGGTATGGATT+TGG + chr5.4:64534803-64534822 MS.gene80652:intron 30.0%
! TTCTTTTACTCCTTTCTCTA+TGG + chr5.4:64535259-64535278 MS.gene80652:intron 30.0%
!! ATGCACAAAAGTACTACATA+AGG + chr5.4:64536015-64536034 MS.gene80652:CDS 30.0%
!! GTAACTTTTAAAAGGGGTAA+AGG - chr5.4:64535719-64535738 None:intergenic 30.0%
!!! GGAAGTTTTTTCTTAGATTG+TGG + chr5.4:64535280-64535299 MS.gene80652:intron 30.0%
AACTTCAAAGGTGAAAGAAG+AGG - chr5.4:64535090-64535109 None:intergenic 35.0%
AAGAGAGTTACCAAACAGAA+TGG + chr5.4:64534874-64534893 MS.gene80652:CDS 35.0%
ACATCAAAAACAGTCTTACC+AGG - chr5.4:64534990-64535009 None:intergenic 35.0%
AGAAGATGTGAGTGAAATTG+AGG + chr5.4:64535034-64535053 MS.gene80652:CDS 35.0%
ATAAGGATACACCAGATAGA+TGG + chr5.4:64534943-64534962 MS.gene80652:CDS 35.0%
ATAAGGCAAAAGGTTTCTTC+TGG + chr5.4:64536032-64536051 MS.gene80652:CDS 35.0%
GAGTCTGTAACACTTAATGA+TGG + chr5.4:64535391-64535410 MS.gene80652:intron 35.0%
GATTAAGCAGTATAGGGAAT+TGG + chr5.4:64535010-64535029 MS.gene80652:CDS 35.0%
GTTGTGATATCATGAATGCT+TGG - chr5.4:64536077-64536096 None:intergenic 35.0%
TATGCTAAGCTGAAAGTTTC+GGG + chr5.4:64536254-64536273 MS.gene80652:CDS 35.0%
! ACTATGATGGAAACAGAAGA+AGG + chr5.4:64535123-64535142 MS.gene80652:CDS 35.0%
! AGGAGACACATTGACTAATA+AGG - chr5.4:64536144-64536163 None:intergenic 35.0%
! TTTGTGCATGTTTGGAATCA+CGG + chr5.4:64535887-64535906 MS.gene80652:intron 35.0%
!! AAGGACTTGTTGTTATCTGA+TGG - chr5.4:64536125-64536144 None:intergenic 35.0%
!! TTCAACAAAGGAGCTGTTTT+TGG + chr5.4:64536299-64536318 MS.gene80652:CDS 35.0%
AAAGAAGAGGCAAGATAACC+AGG - chr5.4:64535077-64535096 None:intergenic 40.0%
AAGATTGCTGAGATGATTCC+TGG + chr5.4:64534969-64534988 MS.gene80652:CDS 40.0%
AGTACTAGCCACTACAATGA+TGG + chr5.4:64536185-64536204 MS.gene80652:CDS 40.0%
CTTCTCTACTCCATTCTGTT+TGG - chr5.4:64534887-64534906 None:intergenic 40.0%
GCAATCTTAAGCCATCTATC+TGG - chr5.4:64534957-64534976 None:intergenic 40.0%
GTAAAGGCAAACTCCAATTG+AGG - chr5.4:64535703-64535722 None:intergenic 40.0%
TCTCCTATGCAGCAGAAAAT+GGG + chr5.4:64536158-64536177 MS.gene80652:CDS 40.0%
TCTGATCATGAGAGGAAGAA+AGG + chr5.4:64535164-64535183 MS.gene80652:CDS 40.0%
! GCTTCTAGAGACTTCAACAA+AGG + chr5.4:64536287-64536306 MS.gene80652:CDS 40.0%
! TTAGAGGTTCTGATCATGAG+AGG + chr5.4:64535156-64535175 MS.gene80652:CDS 40.0%
!! ACAATGATGGATCACCACAA+GGG + chr5.4:64536198-64536217 MS.gene80652:CDS 40.0%
!! TACAATGATGGATCACCACA+AGG + chr5.4:64536197-64536216 MS.gene80652:CDS 40.0%
!!! CTGATGGGGCTTTTAAAGTA+TGG + chr5.4:64535924-64535943 MS.gene80652:CDS 40.0%
!!! GGGCTTTTAAAGTATGGCAA+AGG + chr5.4:64535930-64535949 MS.gene80652:CDS 40.0%
ACCAGGAATCGGAACATTTC+CGG - chr5.4:64535060-64535079 None:intergenic 45.0%
AGGCAAAAGGTTTCTTCTGG+AGG + chr5.4:64536035-64536054 MS.gene80652:CDS 45.0%
CTATGACTGCTCTTTCCATG+AGG + chr5.4:64536229-64536248 MS.gene80652:CDS 45.0%
CTATGCAGCAGAAAATGGGT+TGG + chr5.4:64536162-64536181 MS.gene80652:CDS 45.0%
CTATGTTCCTCTTCAGTCCA+AGG - chr5.4:64535194-64535213 None:intergenic 45.0%
CTTGGACTGAAGAGGAACAT+AGG + chr5.4:64535192-64535211 MS.gene80652:CDS 45.0%
GAGGCAAGATAACCAGGAAT+CGG - chr5.4:64535071-64535090 None:intergenic 45.0%
GATGTGAGTGAAATTGAGGC+CGG + chr5.4:64535038-64535057 MS.gene80652:CDS 45.0%
GCAGATAATGCAGCCTCAAT+TGG + chr5.4:64535687-64535706 MS.gene80652:intron 45.0%
GTCTCCTATGCAGCAGAAAA+TGG + chr5.4:64536157-64536176 MS.gene80652:CDS 45.0%
GTGGTGATCCATCATTGTAG+TGG - chr5.4:64536196-64536215 None:intergenic 45.0%
TAAAGTATGGCAAAGGCGAC+TGG + chr5.4:64535937-64535956 MS.gene80652:CDS 45.0%
TAAGACACGGAAGCTAGAGA+CGG + chr5.4:64535342-64535361 MS.gene80652:intron 45.0%
TCAGCTTAGCATAAGCCTCA+TGG - chr5.4:64536247-64536266 None:intergenic 45.0%
! AGAAGGCATGTGACTGTTAG+AGG + chr5.4:64535140-64535159 MS.gene80652:CDS 45.0%
! CAACCCATTTTCTGCTGCAT+AGG - chr5.4:64536164-64536183 None:intergenic 45.0%
! CGTACAGACGTTTTCTGATG+GGG + chr5.4:64535910-64535929 MS.gene80652:intron 45.0%
! GCGTACAGACGTTTTCTGAT+GGG + chr5.4:64535909-64535928 MS.gene80652:intron 45.0%
!! AGAGGAAGAAAGGTGTTCCT+TGG + chr5.4:64535174-64535193 MS.gene80652:CDS 45.0%
!! GCATGACTTGCTACTTGTGT+TGG - chr5.4:64535999-64536018 None:intergenic 45.0%
AGGTGTTCCTTGGACTGAAG+AGG + chr5.4:64535184-64535203 MS.gene80652:CDS 50.0%
TCATAGAGATCCTGCCCTTG+TGG - chr5.4:64536215-64536234 None:intergenic 50.0%
! GGCGTACAGACGTTTTCTGA+TGG + chr5.4:64535908-64535927 MS.gene80652:intron 50.0%
GCCGGAAATGTTCCGATTCC+TGG + chr5.4:64535056-64535075 MS.gene80652:CDS 55.0%
! TGATGGATCACCACAAGGGC+AGG + chr5.4:64536202-64536221 MS.gene80652:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 64534632 64536337 64534632 ID=MS.gene80652
chr5.4 mRNA 64534632 64536337 64534632 ID=MS.gene80652.t1;Parent=MS.gene80652
chr5.4 exon 64534632 64534644 64534632 ID=MS.gene80652.t1.exon1;Parent=MS.gene80652.t1
chr5.4 CDS 64534632 64534644 64534632 ID=cds.MS.gene80652.t1;Parent=MS.gene80652.t1
chr5.4 exon 64534814 64535213 64534814 ID=MS.gene80652.t1.exon2;Parent=MS.gene80652.t1
chr5.4 CDS 64534814 64535213 64534814 ID=cds.MS.gene80652.t1;Parent=MS.gene80652.t1
chr5.4 exon 64535917 64536337 64535917 ID=MS.gene80652.t1.exon3;Parent=MS.gene80652.t1
chr5.4 CDS 64535917 64536337 64535917 ID=cds.MS.gene80652.t1;Parent=MS.gene80652.t1
Gene Sequence

>MS.gene80652

ATGATACTAAAAGGTATGACTTTGATAGATTCTCAGCTTTATCTTAATAATCACACAAGTAAAAGATTCTTGTTTCTGTTTTCTATGTGACATGTTGATCAAAGTTCTATAATTTCCTCTTTTTTGTGGTTTTGTATGTGTGTTTAAAACCAAACCTTTTGTAGTAGTATTTGTGATTTAAGGTATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGTTGGATACAAATTGGCTTGTTGAAGAGAGTTACCAAACAGAATGGAGTAGAGAAGATAACAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGCTTAAGATTGCTGAGATGATTCCTGGTAAGACTGTTTTTGATGTGATTAAGCAGTATAGGGAATTGGTAGAAGATGTGAGTGAAATTGAGGCCGGAAATGTTCCGATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAAGTTGTCAAAAAACAAAACTATGATGGAAACAGAAGAAGGCATGTGACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGTGAGTTTCATCAATCTAGAATCTTCAATTGTCCTTTTCTTTTTGTTCTTTTACTCCTTTCTCTATGGAAGTTTTTTCTTAGATTGTGGAGAAAGAAAACCTATAGTATACTACTAGAAAAATTGAAGTAAGACACGGAAGCTAGAGACGGAAAAAATAAAATCGGTCACTAAATTTGAGTCTGTAACACTTAATGATGGAGTTTGAGACGAATTTCTCATTTTTTTCGTCTCAAGATTTCTGTCGCTATTTCAATTTTTCAAGTAGTATTGATATTGAAATTTAGCTAATGAATCATATTCATGGATATTGAAATTTAGCTAATGAATCATTTTCCTAGATTTTAGGTTTTTTATTTCTCATACAATTCTAATCGACTTTTATAATAGCTGATTTGTTAATATAGTGAAATAATTTGATTTTAGTAGCAGTCATGTTGCGATTTTTGATATTGCTTAAAATCACAATCACATGCAGATAATGCAGCCTCAATTGGAGTTTGCCTTTACCCCTTTTAAAAGTTACTTGTTATTGAACTTGATTATTAGTTTGGATAAGTATATTAAATTTTTGAACTTCATGCAAAAACACAAATCAATCGACATGTTAAATTGAGTTGGTTTAGGAGTTTGCCTTTACCCCTTTTAAAAGTTACTTGTTATTGAATTTACTCTTTGTGCATGTTTGGAATCACGGCGTACAGACGTTTTCTGATGGGGCTTTTAAAGTATGGCAAAGGCGACTGGAGAAACATCTCGCGCAATTTCGTCGTGACAAAGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATCACAACTGTTACTCTCACAGAAACTTCTTCTCCATCAGATAACAACAAGTCCTTATTAGTCAATGTGTCTCCTATGCAGCAGAAAATGGGTTGGAGTACTAGCCACTACAATGATGGATCACCACAAGGGCAGGATCTCTATGACTGCTCTTTCCATGAGGCTTATGCTAAGCTGAAAGTTTCGGGTTTCGCGACAGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTGTAA
Protein sequence

>MS.gene80652.t1

MILKGMDLETLYSPYFMLDTNWLVEESYQTEWSREDNKKFESALAIYDKDTPDRWLKIAEMIPGKTVFDVIKQYRELVEDVSEIEAGNVPIPGYLASSFTFEVVKKQNYDGNRRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSPSDNNKSLLVNVSPMQQKMGWSTSHYNDGSPQGQDLYDCSFHEAYAKLKVSGFATASRDFNKGAVFGIHAL