Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80829.t1 | RHN52786.1 | 97.8 | 138 | 3 | 0 | 1 | 138 | 107 | 244 | 6.90E-65 | 256.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80829.t1 | Q8GWK7 | 88.2 | 93 | 11 | 0 | 46 | 138 | 144 | 236 | 5.0e-40 | 165.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80829.t1 | A0A396HHQ6 | 97.8 | 138 | 3 | 0 | 1 | 138 | 107 | 244 | 5.0e-65 | 256.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene80829.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80829.t1 | MTR_6g084120 | 91.304 | 138 | 3 | 1 | 1 | 138 | 107 | 235 | 3.13e-87 | 255 |
MS.gene80829.t1 | MTR_7g053410 | 61.062 | 113 | 43 | 1 | 17 | 129 | 286 | 397 | 1.26e-39 | 139 |
MS.gene80829.t1 | MTR_7g053410 | 61.062 | 113 | 43 | 1 | 17 | 129 | 286 | 397 | 1.94e-39 | 139 |
MS.gene80829.t1 | MTR_8g012290 | 61.538 | 104 | 40 | 0 | 26 | 129 | 268 | 371 | 7.16e-38 | 134 |
MS.gene80829.t1 | MTR_8g012290 | 61.538 | 104 | 40 | 0 | 26 | 129 | 268 | 371 | 8.10e-38 | 134 |
MS.gene80829.t1 | MTR_5g037250 | 54.918 | 122 | 44 | 3 | 10 | 121 | 64 | 184 | 8.98e-38 | 128 |
MS.gene80829.t1 | MTR_8g065740 | 64.000 | 100 | 35 | 1 | 30 | 128 | 285 | 384 | 1.24e-36 | 130 |
MS.gene80829.t1 | MTR_3g498825 | 64.894 | 94 | 32 | 1 | 40 | 132 | 138 | 231 | 1.31e-36 | 127 |
MS.gene80829.t1 | MTR_5g048860 | 63.366 | 101 | 36 | 1 | 30 | 129 | 345 | 445 | 2.58e-36 | 130 |
MS.gene80829.t1 | MTR_4g070320 | 54.472 | 123 | 42 | 2 | 18 | 126 | 98 | 220 | 7.40e-36 | 126 |
MS.gene80829.t1 | MTR_3g116770 | 69.318 | 88 | 25 | 1 | 45 | 132 | 187 | 272 | 2.05e-35 | 126 |
MS.gene80829.t1 | MTR_3g116770 | 69.318 | 88 | 25 | 1 | 45 | 132 | 187 | 272 | 2.10e-35 | 126 |
MS.gene80829.t1 | MTR_8g099880 | 62.766 | 94 | 34 | 1 | 40 | 132 | 136 | 229 | 2.76e-35 | 124 |
MS.gene80829.t1 | MTR_1g017350 | 60.000 | 100 | 39 | 1 | 30 | 128 | 240 | 339 | 8.66e-35 | 124 |
MS.gene80829.t1 | MTR_1g017350 | 60.000 | 100 | 39 | 1 | 30 | 128 | 240 | 339 | 8.85e-35 | 124 |
MS.gene80829.t1 | MTR_1g017350 | 60.000 | 100 | 39 | 1 | 30 | 128 | 240 | 339 | 9.88e-35 | 124 |
MS.gene80829.t1 | MTR_1g017350 | 60.000 | 100 | 39 | 1 | 30 | 128 | 240 | 339 | 1.03e-34 | 124 |
MS.gene80829.t1 | MTR_8g062240 | 58.586 | 99 | 31 | 1 | 47 | 135 | 149 | 247 | 2.34e-34 | 120 |
MS.gene80829.t1 | MTR_1g059270 | 67.500 | 80 | 26 | 0 | 47 | 126 | 158 | 237 | 3.52e-34 | 119 |
MS.gene80829.t1 | MTR_1g059270 | 67.500 | 80 | 26 | 0 | 47 | 126 | 158 | 237 | 8.28e-34 | 120 |
MS.gene80829.t1 | MTR_7g092510 | 67.500 | 80 | 26 | 0 | 47 | 126 | 171 | 250 | 8.17e-33 | 118 |
MS.gene80829.t1 | MTR_4g131160 | 62.121 | 66 | 24 | 1 | 49 | 114 | 196 | 260 | 3.01e-19 | 82.4 |
MS.gene80829.t1 | MTR_4g131160 | 62.121 | 66 | 24 | 1 | 49 | 114 | 199 | 263 | 3.51e-19 | 82.4 |
MS.gene80829.t1 | MTR_1g080890 | 59.091 | 66 | 26 | 1 | 49 | 114 | 193 | 257 | 4.35e-18 | 79.0 |
MS.gene80829.t1 | MTR_1g069155 | 45.570 | 79 | 42 | 1 | 36 | 114 | 304 | 381 | 1.10e-15 | 72.8 |
MS.gene80829.t1 | MTR_1g019240 | 44.304 | 79 | 43 | 1 | 37 | 115 | 73 | 150 | 9.68e-15 | 68.9 |
MS.gene80829.t1 | MTR_4g033295 | 49.231 | 65 | 33 | 0 | 49 | 113 | 118 | 182 | 2.14e-14 | 67.0 |
MS.gene80829.t1 | MTR_5g005110 | 43.529 | 85 | 47 | 1 | 29 | 113 | 204 | 287 | 2.62e-14 | 68.6 |
MS.gene80829.t1 | MTR_4g033295 | 47.761 | 67 | 34 | 1 | 49 | 114 | 118 | 184 | 2.92e-14 | 66.6 |
MS.gene80829.t1 | MTR_4g065870 | 49.231 | 65 | 33 | 0 | 49 | 113 | 355 | 419 | 6.19e-14 | 67.8 |
MS.gene80829.t1 | MTR_1g018090 | 50.769 | 65 | 31 | 1 | 49 | 113 | 274 | 337 | 1.05e-13 | 67.0 |
MS.gene80829.t1 | MTR_1g070870 | 57.576 | 66 | 27 | 1 | 49 | 114 | 120 | 184 | 2.32e-13 | 65.5 |
MS.gene80829.t1 | MTR_1g070870 | 57.576 | 66 | 27 | 1 | 49 | 114 | 123 | 187 | 2.39e-13 | 65.5 |
MS.gene80829.t1 | MTR_4g065870 | 48.387 | 62 | 32 | 0 | 49 | 110 | 355 | 416 | 3.33e-13 | 65.5 |
MS.gene80829.t1 | MTR_2g098310 | 46.154 | 65 | 35 | 0 | 49 | 113 | 332 | 396 | 5.35e-13 | 65.1 |
MS.gene80829.t1 | MTR_3g103030 | 51.562 | 64 | 30 | 1 | 50 | 113 | 230 | 292 | 5.86e-13 | 64.7 |
MS.gene80829.t1 | MTR_1g084980 | 45.312 | 64 | 34 | 1 | 51 | 114 | 464 | 526 | 6.08e-13 | 65.1 |
MS.gene80829.t1 | MTR_7g099540 | 43.038 | 79 | 43 | 2 | 36 | 114 | 240 | 316 | 6.34e-13 | 64.7 |
MS.gene80829.t1 | MTR_2g098310 | 46.875 | 64 | 34 | 0 | 49 | 112 | 332 | 395 | 1.72e-12 | 63.5 |
MS.gene80829.t1 | MTR_7g092540 | 46.269 | 67 | 36 | 0 | 49 | 115 | 243 | 309 | 2.78e-12 | 62.8 |
MS.gene80829.t1 | MTR_5g017040 | 48.485 | 66 | 31 | 2 | 60 | 123 | 116 | 180 | 3.13e-12 | 62.8 |
MS.gene80829.t1 | MTR_7g099540 | 43.038 | 79 | 43 | 2 | 36 | 114 | 240 | 316 | 4.75e-12 | 62.4 |
MS.gene80829.t1 | MTR_1g052470 | 44.776 | 67 | 37 | 0 | 49 | 115 | 298 | 364 | 5.14e-12 | 62.0 |
MS.gene80829.t1 | MTR_7g092540 | 46.154 | 65 | 35 | 0 | 49 | 113 | 243 | 307 | 5.43e-12 | 62.0 |
MS.gene80829.t1 | MTR_3g028520 | 44.615 | 65 | 36 | 0 | 49 | 113 | 322 | 386 | 8.74e-12 | 61.6 |
MS.gene80829.t1 | MTR_3g027650 | 44.615 | 65 | 36 | 0 | 49 | 113 | 322 | 386 | 8.74e-12 | 61.6 |
MS.gene80829.t1 | MTR_3g449770 | 46.875 | 64 | 33 | 1 | 51 | 114 | 311 | 373 | 1.54e-11 | 60.8 |
MS.gene80829.t1 | MTR_3g027650 | 45.161 | 62 | 34 | 0 | 49 | 110 | 322 | 383 | 3.22e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80829.t1 | AT1G73830 | 82.301 | 113 | 18 | 1 | 26 | 138 | 126 | 236 | 9.99e-58 | 180 |
MS.gene80829.t1 | AT1G73830 | 82.143 | 112 | 18 | 1 | 26 | 137 | 126 | 235 | 2.15e-57 | 179 |
MS.gene80829.t1 | AT1G18400 | 83.871 | 93 | 15 | 0 | 46 | 138 | 142 | 234 | 8.39e-56 | 175 |
MS.gene80829.t1 | AT1G18400 | 84.615 | 91 | 14 | 0 | 46 | 136 | 142 | 232 | 1.13e-55 | 174 |
MS.gene80829.t1 | AT1G25330 | 71.000 | 100 | 28 | 1 | 39 | 137 | 94 | 193 | 2.77e-47 | 152 |
MS.gene80829.t1 | AT5G50915 | 62.264 | 106 | 39 | 1 | 28 | 132 | 115 | 220 | 1.18e-40 | 137 |
MS.gene80829.t1 | AT5G50915 | 62.264 | 106 | 39 | 1 | 28 | 132 | 115 | 220 | 1.18e-40 | 137 |
MS.gene80829.t1 | AT5G50915 | 62.264 | 106 | 39 | 1 | 28 | 132 | 115 | 220 | 2.07e-40 | 136 |
MS.gene80829.t1 | AT5G50915 | 62.264 | 106 | 39 | 1 | 28 | 132 | 115 | 220 | 2.07e-40 | 136 |
MS.gene80829.t1 | AT3G07340 | 58.197 | 122 | 45 | 1 | 11 | 126 | 214 | 335 | 2.82e-39 | 137 |
MS.gene80829.t1 | AT3G07340 | 58.197 | 122 | 45 | 1 | 11 | 126 | 214 | 335 | 2.94e-39 | 137 |
MS.gene80829.t1 | AT5G48560 | 70.115 | 87 | 25 | 1 | 41 | 126 | 293 | 379 | 5.23e-37 | 131 |
MS.gene80829.t1 | AT5G48560 | 70.115 | 87 | 25 | 1 | 41 | 126 | 293 | 379 | 8.79e-37 | 131 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 170 | 252 | 1.99e-36 | 127 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 199 | 281 | 5.16e-36 | 127 |
MS.gene80829.t1 | AT1G68920 | 71.951 | 82 | 23 | 0 | 47 | 128 | 300 | 381 | 5.33e-36 | 129 |
MS.gene80829.t1 | AT1G68920 | 71.951 | 82 | 23 | 0 | 47 | 128 | 301 | 382 | 5.38e-36 | 129 |
MS.gene80829.t1 | AT1G68920 | 71.951 | 82 | 23 | 0 | 47 | 128 | 301 | 382 | 5.38e-36 | 129 |
MS.gene80829.t1 | AT1G68920 | 71.951 | 82 | 23 | 0 | 47 | 128 | 301 | 382 | 5.38e-36 | 129 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 221 | 303 | 5.93e-36 | 127 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 221 | 303 | 5.93e-36 | 127 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 221 | 303 | 5.93e-36 | 127 |
MS.gene80829.t1 | AT1G26260 | 69.880 | 83 | 25 | 0 | 47 | 129 | 221 | 303 | 5.93e-36 | 127 |
MS.gene80829.t1 | AT3G23690 | 65.517 | 87 | 30 | 0 | 41 | 127 | 183 | 269 | 1.22e-35 | 126 |
MS.gene80829.t1 | AT1G59640 | 67.901 | 81 | 26 | 0 | 41 | 121 | 128 | 208 | 1.44e-35 | 123 |
MS.gene80829.t1 | AT4G34530 | 62.105 | 95 | 34 | 1 | 38 | 132 | 161 | 253 | 1.31e-34 | 122 |
MS.gene80829.t1 | AT3G57800 | 63.736 | 91 | 33 | 0 | 39 | 129 | 194 | 284 | 2.45e-34 | 123 |
MS.gene80829.t1 | AT4G36540 | 59.000 | 100 | 39 | 1 | 38 | 137 | 130 | 227 | 3.38e-34 | 121 |
MS.gene80829.t1 | AT4G36540 | 59.596 | 99 | 38 | 1 | 38 | 136 | 130 | 226 | 4.27e-34 | 120 |
MS.gene80829.t1 | AT1G59640 | 64.444 | 90 | 27 | 1 | 37 | 121 | 119 | 208 | 4.83e-34 | 121 |
MS.gene80829.t1 | AT5G62610 | 69.737 | 76 | 23 | 0 | 41 | 116 | 145 | 220 | 4.98e-34 | 120 |
MS.gene80829.t1 | AT5G62610 | 69.737 | 76 | 23 | 0 | 41 | 116 | 145 | 220 | 4.98e-34 | 120 |
MS.gene80829.t1 | AT1G10120 | 60.825 | 97 | 36 | 1 | 34 | 130 | 191 | 285 | 8.43e-34 | 121 |
MS.gene80829.t1 | AT1G10120 | 60.825 | 97 | 36 | 1 | 34 | 130 | 191 | 285 | 8.43e-34 | 121 |
MS.gene80829.t1 | AT2G42300 | 66.250 | 80 | 27 | 0 | 47 | 126 | 183 | 262 | 3.88e-33 | 117 |
MS.gene80829.t1 | AT2G42300 | 66.250 | 80 | 27 | 0 | 47 | 126 | 183 | 262 | 1.74e-32 | 117 |
MS.gene80829.t1 | AT2G18300 | 70.130 | 77 | 23 | 0 | 40 | 116 | 176 | 252 | 2.73e-31 | 114 |
MS.gene80829.t1 | AT2G18300 | 70.130 | 77 | 23 | 0 | 40 | 116 | 176 | 252 | 2.87e-31 | 114 |
MS.gene80829.t1 | AT2G18300 | 70.130 | 77 | 23 | 0 | 40 | 116 | 176 | 252 | 5.71e-31 | 114 |
MS.gene80829.t1 | AT3G57800 | 42.029 | 138 | 33 | 1 | 39 | 129 | 194 | 331 | 3.39e-23 | 93.6 |
MS.gene80829.t1 | AT2G24260 | 60.606 | 66 | 25 | 1 | 49 | 114 | 35 | 99 | 1.99e-19 | 81.3 |
MS.gene80829.t1 | AT4G30980 | 62.121 | 66 | 24 | 1 | 49 | 114 | 130 | 194 | 3.65e-19 | 81.6 |
MS.gene80829.t1 | AT4G30980 | 62.121 | 66 | 24 | 1 | 49 | 114 | 178 | 242 | 5.39e-19 | 81.6 |
MS.gene80829.t1 | AT5G58010 | 62.121 | 66 | 24 | 1 | 49 | 114 | 99 | 163 | 6.83e-19 | 80.9 |
MS.gene80829.t1 | AT2G24260 | 60.606 | 66 | 25 | 1 | 49 | 114 | 138 | 202 | 8.43e-19 | 80.9 |
MS.gene80829.t1 | AT2G42300 | 75.610 | 41 | 10 | 0 | 47 | 87 | 183 | 223 | 7.40e-16 | 71.6 |
MS.gene80829.t1 | AT2G42300 | 75.610 | 41 | 10 | 0 | 47 | 87 | 183 | 223 | 7.40e-16 | 71.6 |
MS.gene80829.t1 | AT2G42300 | 75.610 | 41 | 10 | 0 | 47 | 87 | 183 | 223 | 1.06e-15 | 71.2 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT1G09530 | 40.800 | 125 | 59 | 5 | 9 | 123 | 287 | 406 | 6.38e-15 | 70.5 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 196 | 271 | 1.43e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 196 | 271 | 1.43e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 196 | 271 | 1.43e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 267 | 342 | 1.83e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 267 | 342 | 1.83e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 267 | 342 | 1.83e-14 | 69.3 |
MS.gene80829.t1 | AT2G20180 | 42.857 | 77 | 43 | 1 | 38 | 114 | 267 | 342 | 1.83e-14 | 69.3 |
MS.gene80829.t1 | AT2G46970 | 40.964 | 83 | 43 | 2 | 37 | 114 | 206 | 287 | 6.95e-14 | 67.4 |
MS.gene80829.t1 | AT2G46970 | 40.964 | 83 | 43 | 2 | 37 | 114 | 184 | 265 | 8.01e-14 | 67.4 |
MS.gene80829.t1 | AT2G46970 | 40.964 | 83 | 43 | 2 | 37 | 114 | 175 | 256 | 8.60e-14 | 67.4 |
MS.gene80829.t1 | AT2G20180 | 43.836 | 73 | 40 | 1 | 38 | 110 | 267 | 338 | 1.71e-13 | 66.2 |
MS.gene80829.t1 | AT4G33880 | 40.777 | 103 | 59 | 2 | 12 | 113 | 228 | 329 | 2.09e-13 | 66.2 |
MS.gene80829.t1 | AT1G27740 | 51.562 | 64 | 30 | 1 | 50 | 113 | 168 | 230 | 4.03e-13 | 64.7 |
MS.gene80829.t1 | AT1G03040 | 56.061 | 66 | 28 | 1 | 49 | 114 | 139 | 203 | 9.31e-13 | 63.9 |
MS.gene80829.t1 | AT1G03040 | 56.061 | 66 | 28 | 1 | 49 | 114 | 144 | 208 | 1.18e-12 | 63.5 |
MS.gene80829.t1 | AT4G02590 | 56.061 | 66 | 28 | 1 | 49 | 114 | 83 | 147 | 1.22e-12 | 63.2 |
MS.gene80829.t1 | AT4G02590 | 56.061 | 66 | 28 | 1 | 49 | 114 | 146 | 210 | 1.38e-12 | 63.5 |
MS.gene80829.t1 | AT4G02590 | 56.061 | 66 | 28 | 1 | 49 | 114 | 146 | 210 | 1.38e-12 | 63.5 |
MS.gene80829.t1 | AT1G51140 | 46.875 | 64 | 34 | 0 | 49 | 112 | 304 | 367 | 1.51e-12 | 63.5 |
MS.gene80829.t1 | AT4G00050 | 42.683 | 82 | 46 | 1 | 32 | 113 | 88 | 168 | 1.74e-12 | 63.2 |
MS.gene80829.t1 | AT4G28800 | 37.000 | 100 | 54 | 3 | 14 | 113 | 222 | 312 | 1.81e-12 | 63.5 |
MS.gene80829.t1 | AT4G28815 | 37.037 | 81 | 46 | 2 | 52 | 128 | 71 | 150 | 1.81e-12 | 62.4 |
MS.gene80829.t1 | AT1G03040 | 56.061 | 66 | 28 | 1 | 49 | 114 | 144 | 208 | 1.92e-12 | 63.2 |
MS.gene80829.t1 | AT4G09180 | 45.455 | 66 | 36 | 0 | 48 | 113 | 183 | 248 | 1.99e-12 | 62.8 |
MS.gene80829.t1 | AT1G35460 | 46.154 | 65 | 35 | 0 | 49 | 113 | 181 | 245 | 2.17e-12 | 62.8 |
MS.gene80829.t1 | AT4G28790 | 46.875 | 64 | 33 | 1 | 51 | 114 | 273 | 335 | 2.22e-12 | 63.2 |
MS.gene80829.t1 | AT4G28815 | 37.037 | 81 | 46 | 2 | 52 | 128 | 147 | 226 | 2.76e-12 | 62.8 |
MS.gene80829.t1 | AT4G00050 | 42.683 | 82 | 46 | 1 | 32 | 113 | 190 | 270 | 3.41e-12 | 62.8 |
MS.gene80829.t1 | AT4G00050 | 42.683 | 82 | 46 | 1 | 32 | 113 | 190 | 270 | 4.27e-12 | 62.4 |
MS.gene80829.t1 | AT2G43140 | 50.000 | 64 | 32 | 0 | 49 | 112 | 134 | 197 | 4.34e-12 | 61.2 |
MS.gene80829.t1 | AT2G43140 | 50.000 | 64 | 32 | 0 | 49 | 112 | 231 | 294 | 5.68e-12 | 62.0 |
MS.gene80829.t1 | AT2G14760 | 47.692 | 65 | 33 | 1 | 49 | 113 | 237 | 300 | 7.07e-12 | 61.6 |
MS.gene80829.t1 | AT4G28800 | 35.780 | 109 | 60 | 4 | 14 | 121 | 234 | 333 | 7.36e-12 | 62.0 |
MS.gene80829.t1 | AT4G28790 | 45.455 | 66 | 35 | 1 | 51 | 116 | 273 | 337 | 1.16e-11 | 61.2 |
MS.gene80829.t1 | AT2G42280 | 43.077 | 65 | 37 | 0 | 49 | 113 | 279 | 343 | 1.16e-11 | 61.2 |
MS.gene80829.t1 | AT2G42280 | 45.455 | 66 | 34 | 1 | 49 | 112 | 279 | 344 | 1.25e-11 | 61.2 |
MS.gene80829.t1 | AT1G05805 | 45.312 | 64 | 35 | 0 | 49 | 112 | 283 | 346 | 3.12e-11 | 60.1 |
MS.gene80829.t1 | AT5G67110 | 50.909 | 55 | 26 | 1 | 60 | 114 | 98 | 151 | 8.09e-11 | 57.8 |
Find 19 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGAAGAAATTTACAAGTT+TGG | 0.255043 | 6.2:-82700761 | None:intergenic |
TGCTTGCAGAATATTGTTCC+AGG | 0.427390 | 6.2:+82701433 | MS.gene80829:CDS |
ACTCCTGCAGTTTCTGAAAG+TGG | 0.440216 | 6.2:+82700730 | MS.gene80829:CDS |
CTTCCACTTTCAGAAACTGC+AGG | 0.466079 | 6.2:-82700733 | None:intergenic |
TATTGTTCCAGGATGTTACA+AGG | 0.493701 | 6.2:+82701444 | MS.gene80829:CDS |
TTTCAATGGTTGCAGACCAT+GGG | 0.515237 | 6.2:+82701564 | MS.gene80829:intron |
ATATTAACCTTGTAACATCC+TGG | 0.520795 | 6.2:-82701451 | None:intergenic |
TAATTTCAGAGTGGTGGAAG+AGG | 0.521842 | 6.2:+82700865 | MS.gene80829:intron |
TATGATTAATTTCAGAGTGG+TGG | 0.522541 | 6.2:+82700859 | MS.gene80829:intron |
TAGTCACAGTCTAGCAGAAA+GGG | 0.525871 | 6.2:+82700972 | MS.gene80829:CDS |
CATGGGAATGGCAGTAATGT+TGG | 0.527745 | 6.2:+82701581 | MS.gene80829:CDS |
TTGTTATTCAGGTTAGAAGA+GGG | 0.541611 | 6.2:+82701389 | MS.gene80829:intron |
ATAGTCACAGTCTAGCAGAA+AGG | 0.561228 | 6.2:+82700971 | MS.gene80829:CDS |
GTTCATGTTAGAGCAAGAAG+AGG | 0.589317 | 6.2:+82700937 | MS.gene80829:CDS |
TTTGTTATTCAGGTTAGAAG+AGG | 0.590695 | 6.2:+82701388 | MS.gene80829:intron |
ATGGTTGCAGACCATGGGAA+TGG | 0.592994 | 6.2:+82701569 | MS.gene80829:intron |
AACAGAAGAAGAGAAAGCAA+AGG | 0.600831 | 6.2:+82700909 | MS.gene80829:CDS |
CAACATTACTGCCATTCCCA+TGG | 0.603267 | 6.2:-82701580 | None:intergenic |
AGATGATCTAGAAACAATGC+AGG | 0.618754 | 6.2:+82701828 | MS.gene80829:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATTTTTAAAAATTAAA+AGG | - | chr6.2:82701482-82701501 | None:intergenic | 0.0% |
!! | GATGAAATTAAATTATTAAA+TGG | + | chr6.2:82700822-82700841 | MS.gene80829:intron | 10.0% |
!!! | TTTTTTTTTTTTTGTTATTC+AGG | + | chr6.2:82701378-82701397 | MS.gene80829:intron | 10.0% |
!! | AAGTTGAAAAAAAAAACTTA+TGG | + | chr6.2:82701160-82701179 | MS.gene80829:intron | 15.0% |
!! | AATTAATGTGAATTTATGTT+TGG | + | chr6.2:82701737-82701756 | MS.gene80829:intron | 15.0% |
!!! | AAATCAAACTGTTTTATATA+AGG | + | chr6.2:82701094-82701113 | MS.gene80829:intron | 15.0% |
!!! | AGTAATATTCATTTATTTCT+AGG | + | chr6.2:82701651-82701670 | MS.gene80829:intron | 15.0% |
!!! | TAAGCTATTTCTATAATAAA+TGG | + | chr6.2:82701064-82701083 | MS.gene80829:intron | 15.0% |
!!! | TTATTTTCTTTTTGTTTCAA+TGG | + | chr6.2:82701550-82701569 | MS.gene80829:intron | 15.0% |
!! | CACTTAATTAACCTATATTT+AGG | - | chr6.2:82701006-82701025 | None:intergenic | 20.0% |
!!! | ATCTATTTCTAAAAGTTTCA+TGG | + | chr6.2:82701855-82701874 | MS.gene80829:intron | 20.0% |
!!! | TATCAAATTTTCTTCTATCT+TGG | + | chr6.2:82701315-82701334 | MS.gene80829:intron | 20.0% |
! | GGGTATAATTTCCTAAATAT+AGG | + | chr6.2:82700992-82701011 | MS.gene80829:intron | 25.0% |
! | GTAGAAGAAATTTACAAGTT+TGG | - | chr6.2:82700764-82700783 | None:intergenic | 25.0% |
! | TTCTATGATTAATTTCAGAG+TGG | + | chr6.2:82700856-82700875 | MS.gene80829:intron | 25.0% |
!! | TATAACATGCTCATTTTGTA+TGG | + | chr6.2:82701910-82701929 | MS.gene80829:intron | 25.0% |
!!! | AGACTATTTTGAAGAGTTTA+TGG | - | chr6.2:82701204-82701223 | None:intergenic | 25.0% |
ATATTAACCTTGTAACATCC+TGG | - | chr6.2:82701454-82701473 | None:intergenic | 30.0% | |
TATGATTAATTTCAGAGTGG+TGG | + | chr6.2:82700859-82700878 | MS.gene80829:intron | 30.0% | |
TGGTTCATAATTGATGTGTA+TGG | + | chr6.2:82701335-82701354 | MS.gene80829:intron | 30.0% | |
! | CTCATTTTGTATGGTTGTTA+GGG | + | chr6.2:82701919-82701938 | MS.gene80829:intron | 30.0% |
! | TTGTTATTCAGGTTAGAAGA+GGG | + | chr6.2:82701389-82701408 | MS.gene80829:intron | 30.0% |
!! | TTTGTTATTCAGGTTAGAAG+AGG | + | chr6.2:82701388-82701407 | MS.gene80829:intron | 30.0% |
AACAGAAGAAGAGAAAGCAA+AGG | + | chr6.2:82700909-82700928 | MS.gene80829:CDS | 35.0% | |
AGATGATCTAGAAACAATGC+AGG | + | chr6.2:82701828-82701847 | MS.gene80829:CDS | 35.0% | |
TATTGTTCCAGGATGTTACA+AGG | + | chr6.2:82701444-82701463 | MS.gene80829:CDS | 35.0% | |
! | GCTCATTTTGTATGGTTGTT+AGG | + | chr6.2:82701918-82701937 | MS.gene80829:intron | 35.0% |
!! | GATTTTCAAGAGACTAGTTC+TGG | + | chr6.2:82700700-82700719 | MS.gene80829:CDS | 35.0% |
ATAGTCACAGTCTAGCAGAA+AGG | + | chr6.2:82700971-82700990 | MS.gene80829:CDS | 40.0% | |
GTTCATGTTAGAGCAAGAAG+AGG | + | chr6.2:82700937-82700956 | MS.gene80829:CDS | 40.0% | |
TAGTCACAGTCTAGCAGAAA+GGG | + | chr6.2:82700972-82700991 | MS.gene80829:CDS | 40.0% | |
TGCTTGCAGAATATTGTTCC+AGG | + | chr6.2:82701433-82701452 | MS.gene80829:CDS | 40.0% | |
TTTCAATGGTTGCAGACCAT+GGG | + | chr6.2:82701564-82701583 | MS.gene80829:intron | 40.0% | |
! | TAATTTCAGAGTGGTGGAAG+AGG | + | chr6.2:82700865-82700884 | MS.gene80829:intron | 40.0% |
!! | GTTGTTTTCGTAAGCTACAC+TGG | + | chr6.2:82701122-82701141 | MS.gene80829:intron | 40.0% |
CAACATTACTGCCATTCCCA+TGG | - | chr6.2:82701583-82701602 | None:intergenic | 45.0% | |
CATGGGAATGGCAGTAATGT+TGG | + | chr6.2:82701581-82701600 | MS.gene80829:CDS | 45.0% | |
CTTCCACTTTCAGAAACTGC+AGG | - | chr6.2:82700736-82700755 | None:intergenic | 45.0% | |
GTTTCAATGGTTGCAGACCA+TGG | + | chr6.2:82701563-82701582 | MS.gene80829:intron | 45.0% | |
! | ACTCCTGCAGTTTCTGAAAG+TGG | + | chr6.2:82700730-82700749 | MS.gene80829:CDS | 45.0% |
ATGGTTGCAGACCATGGGAA+TGG | + | chr6.2:82701569-82701588 | MS.gene80829:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 82700694 | 82701948 | 82700694 | ID=MS.gene80829 |
chr6.2 | mRNA | 82700694 | 82701948 | 82700694 | ID=MS.gene80829.t1;Parent=MS.gene80829 |
chr6.2 | exon | 82700694 | 82700768 | 82700694 | ID=MS.gene80829.t1.exon1;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82700694 | 82700768 | 82700694 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
chr6.2 | exon | 82700874 | 82700993 | 82700874 | ID=MS.gene80829.t1.exon2;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82700874 | 82700993 | 82700874 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
chr6.2 | exon | 82701400 | 82701465 | 82701400 | ID=MS.gene80829.t1.exon3;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82701400 | 82701465 | 82701400 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
chr6.2 | exon | 82701579 | 82701647 | 82701579 | ID=MS.gene80829.t1.exon4;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82701579 | 82701647 | 82701579 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
chr6.2 | exon | 82701772 | 82701849 | 82701772 | ID=MS.gene80829.t1.exon5;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82701772 | 82701849 | 82701772 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
chr6.2 | exon | 82701940 | 82701948 | 82701940 | ID=MS.gene80829.t1.exon6;Parent=MS.gene80829.t1 |
chr6.2 | CDS | 82701940 | 82701948 | 82701940 | ID=cds.MS.gene80829.t1;Parent=MS.gene80829.t1 |
Gene Sequence |
Protein sequence |