Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80897.t1 | RHN50483.1 | 93.5 | 278 | 18 | 0 | 1 | 278 | 11 | 288 | 7.80E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80897.t1 | Q9FIM0 | 27.6 | 275 | 176 | 8 | 6 | 261 | 6 | 276 | 2.1e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80897.t1 | A0A072U6V5 | 93.5 | 278 | 18 | 0 | 1 | 278 | 1 | 278 | 5.6e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80897.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80897.t1 | MTR_6g018920 | 93.525 | 278 | 18 | 0 | 1 | 278 | 1 | 278 | 0.0 | 550 |
| MS.gene80897.t1 | MTR_1g114730 | 79.259 | 270 | 56 | 0 | 1 | 270 | 1 | 270 | 1.39e-154 | 435 |
| MS.gene80897.t1 | MTR_6g005450 | 67.491 | 283 | 84 | 3 | 1 | 278 | 1 | 280 | 9.48e-133 | 380 |
| MS.gene80897.t1 | MTR_6g005440 | 63.214 | 280 | 72 | 3 | 1 | 280 | 1 | 249 | 2.29e-121 | 350 |
| MS.gene80897.t1 | MTR_4g107170 | 41.667 | 156 | 88 | 1 | 1 | 156 | 1 | 153 | 3.91e-38 | 135 |
| MS.gene80897.t1 | MTR_2g049610 | 43.226 | 155 | 82 | 1 | 1 | 155 | 1 | 149 | 8.53e-38 | 134 |
| MS.gene80897.t1 | MTR_4g045977 | 37.725 | 167 | 101 | 1 | 1 | 167 | 1 | 164 | 3.17e-34 | 128 |
| MS.gene80897.t1 | MTR_2g049530 | 37.662 | 154 | 91 | 2 | 3 | 155 | 5 | 154 | 4.57e-31 | 115 |
| MS.gene80897.t1 | MTR_2g049630 | 38.065 | 155 | 91 | 2 | 2 | 155 | 4 | 154 | 4.20e-29 | 114 |
| MS.gene80897.t1 | MTR_1g115290 | 32.231 | 121 | 81 | 1 | 44 | 164 | 8 | 127 | 1.68e-21 | 88.6 |
| MS.gene80897.t1 | MTR_0061s0010 | 76.744 | 43 | 10 | 0 | 29 | 71 | 1 | 43 | 3.23e-18 | 79.3 |
| MS.gene80897.t1 | MTR_0061s0010 | 71.795 | 39 | 11 | 0 | 131 | 169 | 42 | 80 | 4.61e-11 | 60.1 |
| MS.gene80897.t1 | MTR_3g466980 | 27.044 | 159 | 102 | 5 | 1 | 151 | 1 | 153 | 7.27e-16 | 75.1 |
| MS.gene80897.t1 | MTR_3g102570 | 33.945 | 109 | 64 | 2 | 1 | 109 | 1 | 101 | 9.23e-16 | 76.3 |
| MS.gene80897.t1 | MTR_3g031100 | 25.121 | 207 | 138 | 6 | 1 | 197 | 1 | 200 | 1.18e-15 | 75.1 |
| MS.gene80897.t1 | MTR_3g031240 | 31.746 | 126 | 79 | 3 | 1 | 125 | 1 | 120 | 1.96e-15 | 73.2 |
| MS.gene80897.t1 | MTR_5g075380 | 29.518 | 166 | 101 | 6 | 1 | 157 | 1 | 159 | 1.16e-14 | 70.5 |
| MS.gene80897.t1 | MTR_3g065100 | 27.309 | 249 | 134 | 10 | 1 | 215 | 1 | 236 | 1.62e-14 | 71.6 |
| MS.gene80897.t1 | MTR_3g466890 | 32.099 | 162 | 92 | 7 | 3 | 154 | 2 | 155 | 2.12e-14 | 69.7 |
| MS.gene80897.t1 | MTR_4g032620 | 37.607 | 117 | 58 | 5 | 1 | 116 | 1 | 103 | 3.51e-14 | 70.5 |
| MS.gene80897.t1 | MTR_4g063790 | 28.750 | 160 | 99 | 5 | 1 | 151 | 1 | 154 | 4.07e-14 | 69.3 |
| MS.gene80897.t1 | MTR_8g086290 | 31.293 | 147 | 81 | 4 | 2 | 136 | 12 | 150 | 2.17e-13 | 67.4 |
| MS.gene80897.t1 | MTR_3g466830 | 33.636 | 110 | 66 | 3 | 3 | 111 | 2 | 105 | 8.87e-13 | 65.1 |
| MS.gene80897.t1 | MTR_5g021270 | 29.375 | 160 | 96 | 5 | 1 | 155 | 1 | 148 | 1.39e-12 | 66.2 |
| MS.gene80897.t1 | MTR_5g021270 | 29.375 | 160 | 96 | 5 | 1 | 155 | 1 | 148 | 1.47e-12 | 66.2 |
| MS.gene80897.t1 | MTR_7g075850 | 26.144 | 153 | 99 | 4 | 1 | 150 | 1 | 142 | 1.58e-12 | 66.2 |
| MS.gene80897.t1 | MTR_5g041650 | 29.630 | 108 | 69 | 2 | 1 | 107 | 38 | 139 | 2.08e-12 | 67.0 |
| MS.gene80897.t1 | MTR_8g079502 | 38.272 | 81 | 38 | 2 | 1 | 69 | 1 | 81 | 3.43e-12 | 63.9 |
| MS.gene80897.t1 | MTR_8g087860 | 28.369 | 141 | 92 | 3 | 1 | 141 | 17 | 148 | 3.67e-12 | 65.1 |
| MS.gene80897.t1 | MTR_4g084740 | 26.415 | 159 | 106 | 2 | 1 | 159 | 1 | 148 | 3.68e-12 | 65.9 |
| MS.gene80897.t1 | MTR_3g467080 | 26.875 | 160 | 102 | 7 | 1 | 151 | 1 | 154 | 5.80e-12 | 63.2 |
| MS.gene80897.t1 | MTR_8g033270 | 26.667 | 150 | 101 | 3 | 1 | 150 | 1 | 141 | 7.44e-12 | 64.3 |
| MS.gene80897.t1 | MTR_5g066960 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 1.09e-11 | 59.3 |
| MS.gene80897.t1 | MTR_2g016210 | 32.407 | 108 | 65 | 4 | 2 | 108 | 3 | 103 | 1.12e-11 | 63.5 |
| MS.gene80897.t1 | MTR_4g131030 | 41.667 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 1.31e-11 | 63.2 |
| MS.gene80897.t1 | MTR_2g017865 | 26.389 | 144 | 91 | 3 | 1 | 141 | 16 | 147 | 1.32e-11 | 63.9 |
| MS.gene80897.t1 | MTR_1g047550 | 41.667 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 1.51e-11 | 62.4 |
| MS.gene80897.t1 | MTR_2g105290 | 26.429 | 140 | 99 | 1 | 1 | 136 | 11 | 150 | 1.61e-11 | 62.0 |
| MS.gene80897.t1 | MTR_1g090710 | 25.455 | 165 | 103 | 5 | 1 | 154 | 1 | 156 | 1.77e-11 | 61.6 |
| MS.gene80897.t1 | MTR_1g053070 | 53.061 | 49 | 23 | 0 | 1 | 49 | 1 | 49 | 1.79e-11 | 63.2 |
| MS.gene80897.t1 | MTR_1g054265 | 43.333 | 60 | 34 | 0 | 1 | 60 | 1 | 60 | 1.87e-11 | 61.6 |
| MS.gene80897.t1 | MTR_1g029670 | 27.211 | 147 | 89 | 4 | 1 | 144 | 1 | 132 | 1.94e-11 | 62.0 |
| MS.gene80897.t1 | MTR_5g047580 | 28.125 | 128 | 79 | 4 | 1 | 128 | 1 | 115 | 2.20e-11 | 61.2 |
| MS.gene80897.t1 | MTR_1g090697 | 25.466 | 161 | 107 | 4 | 1 | 154 | 1 | 155 | 2.20e-11 | 61.2 |
| MS.gene80897.t1 | MTR_1g090783 | 26.316 | 152 | 93 | 6 | 3 | 144 | 2 | 144 | 2.36e-11 | 61.2 |
| MS.gene80897.t1 | MTR_2g461710 | 46.939 | 49 | 26 | 0 | 1 | 49 | 1 | 49 | 3.26e-11 | 58.2 |
| MS.gene80897.t1 | MTR_3g088615 | 27.333 | 150 | 91 | 4 | 1 | 147 | 1 | 135 | 3.30e-11 | 61.2 |
| MS.gene80897.t1 | MTR_4g109830 | 28.022 | 182 | 99 | 6 | 1 | 168 | 1 | 164 | 4.19e-11 | 62.0 |
| MS.gene80897.t1 | MTR_7g075870 | 27.273 | 154 | 96 | 4 | 1 | 150 | 1 | 142 | 5.36e-11 | 61.2 |
| MS.gene80897.t1 | MTR_2g009890 | 26.744 | 172 | 91 | 5 | 1 | 159 | 1 | 150 | 5.46e-11 | 62.0 |
| MS.gene80897.t1 | MTR_7g016600 | 48.000 | 50 | 26 | 0 | 1 | 50 | 1 | 50 | 5.94e-11 | 61.6 |
| MS.gene80897.t1 | MTR_6g015975 | 28.966 | 145 | 92 | 4 | 1 | 144 | 1 | 135 | 6.61e-11 | 61.6 |
| MS.gene80897.t1 | MTR_8g097090 | 29.730 | 148 | 89 | 5 | 1 | 144 | 1 | 137 | 7.44e-11 | 61.2 |
| MS.gene80897.t1 | MTR_0003s0590 | 51.020 | 49 | 24 | 0 | 1 | 49 | 1 | 49 | 8.00e-11 | 61.6 |
| MS.gene80897.t1 | MTR_7g075870 | 50.000 | 50 | 25 | 0 | 1 | 50 | 1 | 50 | 8.27e-11 | 60.8 |
| MS.gene80897.t1 | MTR_5g046870 | 36.111 | 72 | 46 | 0 | 1 | 72 | 1 | 72 | 9.20e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80897.t1 | AT5G55690 | 30.980 | 255 | 139 | 7 | 1 | 245 | 1 | 228 | 1.78e-25 | 102 |
| MS.gene80897.t1 | AT5G55690 | 30.980 | 255 | 139 | 7 | 1 | 245 | 1 | 228 | 1.78e-25 | 102 |
| MS.gene80897.t1 | AT5G58890 | 27.636 | 275 | 176 | 8 | 6 | 261 | 6 | 276 | 1.08e-20 | 89.7 |
| MS.gene80897.t1 | AT3G18650 | 28.682 | 258 | 140 | 9 | 16 | 257 | 31 | 260 | 2.44e-17 | 81.6 |
| MS.gene80897.t1 | AT1G22590 | 31.056 | 161 | 100 | 3 | 1 | 156 | 1 | 155 | 6.90e-17 | 76.6 |
| MS.gene80897.t1 | AT1G65300 | 29.114 | 158 | 98 | 6 | 5 | 154 | 4 | 155 | 2.11e-14 | 72.0 |
| MS.gene80897.t1 | AT1G65330 | 34.234 | 111 | 66 | 4 | 3 | 112 | 2 | 106 | 1.09e-13 | 70.1 |
| MS.gene80897.t1 | AT5G27960 | 26.180 | 233 | 131 | 9 | 5 | 202 | 3 | 229 | 1.48e-13 | 70.1 |
| MS.gene80897.t1 | AT5G23260 | 25.263 | 190 | 125 | 4 | 1 | 186 | 1 | 177 | 2.61e-13 | 68.2 |
| MS.gene80897.t1 | AT5G26650 | 34.234 | 111 | 62 | 3 | 5 | 112 | 3 | 105 | 4.05e-13 | 68.9 |
| MS.gene80897.t1 | AT3G05860 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 4.07e-13 | 67.4 |
| MS.gene80897.t1 | AT3G05860 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 5.94e-13 | 67.4 |
| MS.gene80897.t1 | AT3G05860 | 38.961 | 77 | 41 | 3 | 1 | 77 | 1 | 71 | 7.21e-13 | 67.4 |
| MS.gene80897.t1 | AT5G23260 | 25.949 | 158 | 101 | 3 | 1 | 155 | 17 | 161 | 7.38e-13 | 67.4 |
| MS.gene80897.t1 | AT5G23260 | 26.144 | 153 | 97 | 3 | 1 | 150 | 1 | 140 | 8.74e-13 | 67.0 |
| MS.gene80897.t1 | AT5G23260 | 26.144 | 153 | 97 | 3 | 1 | 150 | 17 | 156 | 1.21e-12 | 67.0 |
| MS.gene80897.t1 | AT4G11880 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 1.30e-12 | 65.1 |
| MS.gene80897.t1 | AT4G11880 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 1.30e-12 | 65.1 |
| MS.gene80897.t1 | AT5G26580 | 49.153 | 59 | 30 | 0 | 1 | 59 | 1 | 59 | 3.30e-12 | 66.2 |
| MS.gene80897.t1 | AT3G57230 | 52.000 | 50 | 24 | 0 | 1 | 50 | 1 | 50 | 3.67e-12 | 63.2 |
| MS.gene80897.t1 | AT4G11880 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 4.04e-12 | 64.7 |
| MS.gene80897.t1 | AT4G11880 | 40.000 | 75 | 45 | 0 | 1 | 75 | 1 | 75 | 4.04e-12 | 64.7 |
| MS.gene80897.t1 | AT5G62165 | 32.990 | 97 | 57 | 1 | 1 | 97 | 1 | 89 | 4.67e-12 | 62.0 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 6.52e-12 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 6.52e-12 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 6.52e-12 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 6.52e-12 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 6.52e-12 | 62.8 |
| MS.gene80897.t1 | AT2G45650 | 30.464 | 151 | 93 | 5 | 1 | 150 | 1 | 140 | 6.69e-12 | 64.7 |
| MS.gene80897.t1 | AT2G34440 | 26.471 | 170 | 104 | 5 | 1 | 162 | 1 | 157 | 7.18e-12 | 63.2 |
| MS.gene80897.t1 | AT3G57390 | 28.671 | 143 | 82 | 4 | 1 | 128 | 1 | 138 | 7.78e-12 | 63.9 |
| MS.gene80897.t1 | AT2G03060 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 9.17e-12 | 65.1 |
| MS.gene80897.t1 | AT2G03060 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 9.17e-12 | 65.1 |
| MS.gene80897.t1 | AT2G03060 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 9.17e-12 | 65.1 |
| MS.gene80897.t1 | AT3G57230 | 52.000 | 50 | 24 | 0 | 1 | 50 | 1 | 50 | 9.96e-12 | 63.9 |
| MS.gene80897.t1 | AT3G57230 | 52.000 | 50 | 24 | 0 | 1 | 50 | 1 | 50 | 9.96e-12 | 63.9 |
| MS.gene80897.t1 | AT2G03060 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 1.05e-11 | 65.1 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.06e-11 | 62.4 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.06e-11 | 62.4 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.06e-11 | 62.4 |
| MS.gene80897.t1 | AT3G57390 | 28.671 | 143 | 82 | 4 | 1 | 128 | 1 | 138 | 1.13e-11 | 63.9 |
| MS.gene80897.t1 | AT2G45660 | 27.957 | 186 | 111 | 6 | 1 | 176 | 1 | 173 | 1.22e-11 | 63.2 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.28e-11 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.28e-11 | 62.8 |
| MS.gene80897.t1 | AT1G18750 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 1.39e-11 | 64.7 |
| MS.gene80897.t1 | AT2G22630 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 1.45e-11 | 63.2 |
| MS.gene80897.t1 | AT2G22630 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1 | 58 | 1.45e-11 | 63.2 |
| MS.gene80897.t1 | AT2G45660 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 1.46e-11 | 62.0 |
| MS.gene80897.t1 | AT1G18750 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 1.72e-11 | 64.3 |
| MS.gene80897.t1 | AT1G01530 | 23.830 | 235 | 153 | 6 | 1 | 219 | 6 | 230 | 1.80e-11 | 63.2 |
| MS.gene80897.t1 | AT1G77980 | 22.642 | 159 | 112 | 2 | 1 | 159 | 1 | 148 | 1.82e-11 | 63.9 |
| MS.gene80897.t1 | AT2G28700 | 25.882 | 170 | 106 | 7 | 1 | 164 | 1 | 156 | 1.87e-11 | 63.9 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.93e-11 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.93e-11 | 62.8 |
| MS.gene80897.t1 | AT5G62165 | 30.275 | 109 | 68 | 1 | 1 | 109 | 1 | 101 | 1.93e-11 | 62.8 |
| MS.gene80897.t1 | AT1G18750 | 28.704 | 108 | 70 | 2 | 1 | 107 | 1 | 102 | 1.95e-11 | 64.3 |
| MS.gene80897.t1 | AT4G18960 | 25.342 | 146 | 94 | 4 | 2 | 144 | 18 | 151 | 2.09e-11 | 63.2 |
| MS.gene80897.t1 | AT2G42830 | 26.380 | 163 | 104 | 5 | 1 | 159 | 16 | 166 | 2.54e-11 | 62.8 |
| MS.gene80897.t1 | AT2G42830 | 26.380 | 163 | 104 | 5 | 1 | 159 | 16 | 166 | 2.56e-11 | 62.8 |
| MS.gene80897.t1 | AT5G60910 | 28.758 | 153 | 95 | 4 | 1 | 150 | 1 | 142 | 2.84e-11 | 62.8 |
| MS.gene80897.t1 | AT4G09960 | 26.582 | 158 | 99 | 4 | 1 | 154 | 1 | 145 | 3.03e-11 | 62.4 |
| MS.gene80897.t1 | AT4G09960 | 26.582 | 158 | 99 | 4 | 1 | 154 | 2 | 146 | 3.41e-11 | 62.4 |
| MS.gene80897.t1 | AT4G09960 | 26.582 | 158 | 99 | 4 | 1 | 154 | 11 | 155 | 3.64e-11 | 62.4 |
| MS.gene80897.t1 | AT3G54340 | 25.333 | 150 | 100 | 2 | 1 | 150 | 1 | 138 | 3.87e-11 | 62.0 |
| MS.gene80897.t1 | AT5G13790 | 51.020 | 49 | 24 | 0 | 1 | 49 | 1 | 49 | 3.96e-11 | 62.4 |
| MS.gene80897.t1 | AT1G22130 | 22.642 | 159 | 112 | 2 | 1 | 159 | 1 | 148 | 4.08e-11 | 63.2 |
| MS.gene80897.t1 | AT5G13790 | 51.020 | 49 | 24 | 0 | 1 | 49 | 1 | 49 | 4.14e-11 | 62.4 |
| MS.gene80897.t1 | AT4G09960 | 26.582 | 158 | 99 | 4 | 1 | 154 | 27 | 171 | 7.84e-11 | 61.6 |
| MS.gene80897.t1 | AT1G31640 | 28.829 | 111 | 71 | 3 | 3 | 112 | 2 | 105 | 8.09e-11 | 62.4 |
| MS.gene80897.t1 | AT4G09960 | 26.582 | 158 | 99 | 4 | 1 | 154 | 96 | 240 | 8.23e-11 | 62.0 |
| MS.gene80897.t1 | AT1G24260 | 48.980 | 49 | 25 | 0 | 1 | 49 | 1 | 49 | 8.87e-11 | 61.2 |
| MS.gene80897.t1 | AT1G24260 | 48.980 | 49 | 25 | 0 | 1 | 49 | 1 | 49 | 9.67e-11 | 61.2 |
| MS.gene80897.t1 | AT4G22950 | 38.356 | 73 | 45 | 0 | 1 | 73 | 1 | 73 | 9.76e-11 | 59.7 |
| MS.gene80897.t1 | AT1G24260 | 48.980 | 49 | 25 | 0 | 1 | 49 | 1 | 49 | 9.77e-11 | 61.2 |
Find 62 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGCAGATTGATGTTAAT+TGG | 0.174718 | 6.3:-14887445 | MS.gene80897:CDS |
| TTGTCTTTAGGCCATGTTTC+CGG | 0.275357 | 6.3:+14888019 | None:intergenic |
| ATTAGTGATAAAACCCCATT+AGG | 0.276525 | 6.3:-14887581 | MS.gene80897:CDS |
| TATGCTAAAAGGAGATATTA+AGG | 0.280393 | 6.3:-14887741 | MS.gene80897:CDS |
| ATAAAACCCCATTAGGGTTT+TGG | 0.280522 | 6.3:-14887574 | MS.gene80897:CDS |
| CAAAGGATGCATATGCTAAA+AGG | 0.297288 | 6.3:-14887752 | MS.gene80897:CDS |
| CTTGGCTTTGAGGCCAAGTT+AGG | 0.322315 | 6.3:+14887668 | None:intergenic |
| GAAGTTGCCAAAACCCTAAT+GGG | 0.332063 | 6.3:+14887567 | None:intergenic |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | 6.3:+14887941 | None:intergenic |
| AATCCCGGGGCTTCAAAGTT+AGG | 0.381492 | 6.3:+14888049 | None:intergenic |
| CAAGCAGATTGATGTTAATT+GGG | 0.383614 | 6.3:-14887444 | MS.gene80897:CDS |
| TGAAGTTGCCAAAACCCTAA+TGG | 0.404084 | 6.3:+14887566 | None:intergenic |
| GATGAATCTTACAATTCTCT+TGG | 0.404689 | 6.3:-14887833 | MS.gene80897:CDS |
| TTGATGTTAATTGGGCCAAC+TGG | 0.408093 | 6.3:-14887436 | MS.gene80897:CDS |
| GGGCCGTGGAAGAATATCTA+TGG | 0.413157 | 6.3:-14888194 | MS.gene80897:CDS |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 6.3:+14888090 | None:intergenic |
| TTCTCCTAACTTTGAAGCCC+CGG | 0.437012 | 6.3:-14888053 | MS.gene80897:CDS |
| GCAAATGACCTCAATTGTTC+CGG | 0.442221 | 6.3:+14887809 | None:intergenic |
| CACAAGGTTGATAAATTTGT+AGG | 0.443122 | 6.3:-14887695 | MS.gene80897:CDS |
| AGCCCCGGGATTTGCTGAAC+CGG | 0.446619 | 6.3:-14888038 | MS.gene80897:CDS |
| ACATTTCAAAAGAGAAAGAA+TGG | 0.448242 | 6.3:-14888139 | MS.gene80897:CDS |
| GAAGTAGCTACTTGGCTTTG+AGG | 0.451246 | 6.3:+14887658 | None:intergenic |
| TTAGTGATAAAACCCCATTA+GGG | 0.454096 | 6.3:-14887580 | MS.gene80897:CDS |
| AAAGATGATGTATCCGTCTT+GGG | 0.455496 | 6.3:-14887855 | MS.gene80897:CDS |
| TATCTTCTCTTTGCGCACTT+TGG | 0.461986 | 6.3:+14887877 | None:intergenic |
| CTCTTGGACCGGAACAATTG+AGG | 0.477266 | 6.3:-14887817 | MS.gene80897:CDS |
| ATCTTACAATTCTCTTGGAC+CGG | 0.481367 | 6.3:-14887828 | MS.gene80897:CDS |
| TAAAGATGATGTATCCGTCT+TGG | 0.481458 | 6.3:-14887856 | MS.gene80897:CDS |
| TTTCCGGTTCAGCAAATCCC+GGG | 0.482987 | 6.3:+14888035 | None:intergenic |
| ATGAGATTGAAGTAGCTACT+TGG | 0.483532 | 6.3:+14887650 | None:intergenic |
| ATTTGTAGGTACTCCTAACT+TGG | 0.486423 | 6.3:-14887681 | MS.gene80897:CDS |
| TTATCACTAATATTCATCAA+TGG | 0.491553 | 6.3:+14887593 | None:intergenic |
| ATAGTATGAGCTTTGTGCAT+TGG | 0.491704 | 6.3:+14887508 | None:intergenic |
| TCTCCTAACTTTGAAGCCCC+GGG | 0.498039 | 6.3:-14888052 | MS.gene80897:CDS |
| ATGCTAAAAGGAGATATTAA+GGG | 0.498536 | 6.3:-14887740 | MS.gene80897:CDS |
| TTAACATCAATCTGCTTGCA+AGG | 0.499911 | 6.3:+14887449 | None:intergenic |
| GTTTCCGGTTCAGCAAATCC+CGG | 0.517428 | 6.3:+14888034 | None:intergenic |
| GCTTGCAAGGGTAAGATTGT+GGG | 0.518462 | 6.3:+14887462 | None:intergenic |
| TGCACAAAGCTCATACTATC+CGG | 0.522726 | 6.3:-14887504 | MS.gene80897:CDS |
| TGCTTGCAAGGGTAAGATTG+TGG | 0.530731 | 6.3:+14887461 | None:intergenic |
| ATCAACTCGGTTGGTCCAGT+TGG | 0.531175 | 6.3:+14887421 | None:intergenic |
| AACTTGATGCTTGTAATCAA+AGG | 0.542066 | 6.3:-14887769 | MS.gene80897:CDS |
| GCATTGGAAATCATAGAAGA+AGG | 0.559558 | 6.3:+14887524 | None:intergenic |
| GAGGTCATTTGCTAGCATGT+TGG | 0.565239 | 6.3:-14887798 | MS.gene80897:CDS |
| GATTTGCTGAACCGGAAACA+TGG | 0.565854 | 6.3:-14888030 | MS.gene80897:CDS |
| ACTATAACACAACAAGTGAC+AGG | 0.568787 | 6.3:-14887967 | MS.gene80897:CDS |
| TGAAAATCGACATGAAAGGA+AGG | 0.579772 | 6.3:-14887379 | MS.gene80897:CDS |
| TACCTACCTTCTTGAGACTC+CGG | 0.579791 | 6.3:+14887485 | None:intergenic |
| TACTATCCGGAGTCTCAAGA+AGG | 0.586253 | 6.3:-14887491 | MS.gene80897:CDS |
| TCACTAATATTCATCAATGG+AGG | 0.597003 | 6.3:+14887596 | None:intergenic |
| TCCCCATAGAAAATGGGCCG+TGG | 0.598979 | 6.3:-14888208 | None:intergenic |
| TAACATCAATCTGCTTGCAA+GGG | 0.599195 | 6.3:+14887450 | None:intergenic |
| AACATTAGCATCAACTCGGT+TGG | 0.603209 | 6.3:+14887412 | None:intergenic |
| AAGTTGCCAAAACCCTAATG+GGG | 0.636047 | 6.3:+14887568 | None:intergenic |
| TTGTAAGATTCATCCCAAGA+CGG | 0.662155 | 6.3:+14887842 | None:intergenic |
| TTCCGGTTCAGCAAATCCCG+GGG | 0.665746 | 6.3:+14888036 | None:intergenic |
| ATCCGGAGTCTCAAGAAGGT+AGG | 0.678714 | 6.3:-14887487 | MS.gene80897:CDS |
| GATCTGAAAATCGACATGAA+AGG | 0.686286 | 6.3:-14887383 | MS.gene80897:CDS |
| GCTCCATAGATATTCTTCCA+CGG | 0.693432 | 6.3:+14888191 | None:intergenic |
| ACGTAACATTAGCATCAACT+CGG | 0.701269 | 6.3:+14887408 | None:intergenic |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | 6.3:-14887711 | MS.gene80897:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 6.3:-14888011 | MS.gene80897:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCACTAATATTCATCAA+TGG | + | chr6.3:14887979-14887998 | None:intergenic | 20.0% |
| ! | ACATTTCAAAAGAGAAAGAA+TGG | - | chr6.3:14887430-14887449 | MS.gene80897:CDS | 25.0% |
| ! | ATGCTAAAAGGAGATATTAA+GGG | - | chr6.3:14887829-14887848 | MS.gene80897:CDS | 25.0% |
| ! | TATGCTAAAAGGAGATATTA+AGG | - | chr6.3:14887828-14887847 | MS.gene80897:CDS | 25.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | + | chr6.3:14887594-14887613 | None:intergenic | 25.0% |
| !!! | ATTCTTTCTCTTTTGAAATG+TGG | + | chr6.3:14887431-14887450 | None:intergenic | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | - | chr6.3:14887639-14887658 | MS.gene80897:CDS | 25.0% |
| AACATCAACATCACAAAGAA+TGG | + | chr6.3:14887482-14887501 | None:intergenic | 30.0% | |
| AACTTGATGCTTGTAATCAA+AGG | - | chr6.3:14887800-14887819 | MS.gene80897:CDS | 30.0% | |
| ATTAGTGATAAAACCCCATT+AGG | - | chr6.3:14887988-14888007 | MS.gene80897:CDS | 30.0% | |
| CAAGCAGATTGATGTTAATT+GGG | - | chr6.3:14888125-14888144 | MS.gene80897:CDS | 30.0% | |
| GATGAATCTTACAATTCTCT+TGG | - | chr6.3:14887736-14887755 | MS.gene80897:CDS | 30.0% | |
| TCACTAATATTCATCAATGG+AGG | + | chr6.3:14887976-14887995 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | + | chr6.3:14887631-14887650 | None:intergenic | 30.0% | |
| TTAGTGATAAAACCCCATTA+GGG | - | chr6.3:14887989-14888008 | MS.gene80897:CDS | 30.0% | |
| !! | CACAAGGTTGATAAATTTGT+AGG | - | chr6.3:14887874-14887893 | MS.gene80897:CDS | 30.0% |
| AAAGATGATGTATCCGTCTT+GGG | - | chr6.3:14887714-14887733 | MS.gene80897:CDS | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | - | chr6.3:14887858-14887877 | MS.gene80897:CDS | 35.0% | |
| ACGTAACATTAGCATCAACT+CGG | + | chr6.3:14888164-14888183 | None:intergenic | 35.0% | |
| ACTATAACACAACAAGTGAC+AGG | - | chr6.3:14887602-14887621 | MS.gene80897:CDS | 35.0% | |
| ATCTTACAATTCTCTTGGAC+CGG | - | chr6.3:14887741-14887760 | MS.gene80897:CDS | 35.0% | |
| ATGAGATTGAAGTAGCTACT+TGG | + | chr6.3:14887922-14887941 | None:intergenic | 35.0% | |
| ATTTGTAGGTACTCCTAACT+TGG | - | chr6.3:14887888-14887907 | MS.gene80897:CDS | 35.0% | |
| CAAAGGATGCATATGCTAAA+AGG | - | chr6.3:14887817-14887836 | MS.gene80897:CDS | 35.0% | |
| GATCTGAAAATCGACATGAA+AGG | - | chr6.3:14888186-14888205 | MS.gene80897:CDS | 35.0% | |
| GCAAGCAGATTGATGTTAAT+TGG | - | chr6.3:14888124-14888143 | MS.gene80897:CDS | 35.0% | |
| GCATTGGAAATCATAGAAGA+AGG | + | chr6.3:14888048-14888067 | None:intergenic | 35.0% | |
| TAAAGATGATGTATCCGTCT+TGG | - | chr6.3:14887713-14887732 | MS.gene80897:CDS | 35.0% | |
| TAACATCAATCTGCTTGCAA+GGG | + | chr6.3:14888122-14888141 | None:intergenic | 35.0% | |
| TGAAAATCGACATGAAAGGA+AGG | - | chr6.3:14888190-14888209 | MS.gene80897:CDS | 35.0% | |
| TTAACATCAATCTGCTTGCA+AGG | + | chr6.3:14888123-14888142 | None:intergenic | 35.0% | |
| TTGTAAGATTCATCCCAAGA+CGG | + | chr6.3:14887730-14887749 | None:intergenic | 35.0% | |
| ! | ATAAAACCCCATTAGGGTTT+TGG | - | chr6.3:14887995-14888014 | MS.gene80897:CDS | 35.0% |
| ! | ATAGTATGAGCTTTGTGCAT+TGG | + | chr6.3:14888064-14888083 | None:intergenic | 35.0% |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | + | chr6.3:14887565-14887584 | None:intergenic | 35.0% |
| AACATTAGCATCAACTCGGT+TGG | + | chr6.3:14888160-14888179 | None:intergenic | 40.0% | |
| AAGTTGCCAAAACCCTAATG+GGG | + | chr6.3:14888004-14888023 | None:intergenic | 40.0% | |
| ATGGCCTAAAGACAAAAGAG+AGG | - | chr6.3:14887558-14887577 | MS.gene80897:CDS | 40.0% | |
| GAAGTTGCCAAAACCCTAAT+GGG | + | chr6.3:14888005-14888024 | None:intergenic | 40.0% | |
| GCAAATGACCTCAATTGTTC+CGG | + | chr6.3:14887763-14887782 | None:intergenic | 40.0% | |
| GCTCCATAGATATTCTTCCA+CGG | + | chr6.3:14887381-14887400 | None:intergenic | 40.0% | |
| TATCTTCTCTTTGCGCACTT+TGG | + | chr6.3:14887695-14887714 | None:intergenic | 40.0% | |
| TGAAGTTGCCAAAACCCTAA+TGG | + | chr6.3:14888006-14888025 | None:intergenic | 40.0% | |
| TGCACAAAGCTCATACTATC+CGG | - | chr6.3:14888065-14888084 | MS.gene80897:CDS | 40.0% | |
| TTGATGTTAATTGGGCCAAC+TGG | - | chr6.3:14888133-14888152 | MS.gene80897:CDS | 40.0% | |
| TTGTCTTTAGGCCATGTTTC+CGG | + | chr6.3:14887553-14887572 | None:intergenic | 40.0% | |
| GCTTGCAAGGGTAAGATTGT+GGG | + | chr6.3:14888110-14888129 | None:intergenic | 45.0% | |
| TACCTACCTTCTTGAGACTC+CGG | + | chr6.3:14888087-14888106 | None:intergenic | 45.0% | |
| TACTATCCGGAGTCTCAAGA+AGG | - | chr6.3:14888078-14888097 | MS.gene80897:CDS | 45.0% | |
| TGCTTGCAAGGGTAAGATTG+TGG | + | chr6.3:14888111-14888130 | None:intergenic | 45.0% | |
| ! | GAGGTCATTTGCTAGCATGT+TGG | - | chr6.3:14887771-14887790 | MS.gene80897:CDS | 45.0% |
| !! | AGGGTTTTGGCAACTTCAAC+TGG | - | chr6.3:14888008-14888027 | MS.gene80897:CDS | 45.0% |
| !! | GAAGTAGCTACTTGGCTTTG+AGG | + | chr6.3:14887914-14887933 | None:intergenic | 45.0% |
| !! | GATTTGCTGAACCGGAAACA+TGG | - | chr6.3:14887539-14887558 | MS.gene80897:CDS | 45.0% |
| !! | GGGTTTTGGCAACTTCAACT+GGG | - | chr6.3:14888009-14888028 | MS.gene80897:CDS | 45.0% |
| !! | TTCTCCTAACTTTGAAGCCC+CGG | - | chr6.3:14887516-14887535 | MS.gene80897:CDS | 45.0% |
| AATCCCGGGGCTTCAAAGTT+AGG | + | chr6.3:14887523-14887542 | None:intergenic | 50.0% | |
| ATCCGGAGTCTCAAGAAGGT+AGG | - | chr6.3:14888082-14888101 | MS.gene80897:CDS | 50.0% | |
| CTCTTGGACCGGAACAATTG+AGG | - | chr6.3:14887752-14887771 | MS.gene80897:CDS | 50.0% | |
| GGGCCGTGGAAGAATATCTA+TGG | - | chr6.3:14887375-14887394 | MS.gene80897:CDS | 50.0% | |
| GTTTCCGGTTCAGCAAATCC+CGG | + | chr6.3:14887538-14887557 | None:intergenic | 50.0% | |
| TTTCCGGTTCAGCAAATCCC+GGG | + | chr6.3:14887537-14887556 | None:intergenic | 50.0% | |
| ! | ATCAACTCGGTTGGTCCAGT+TGG | + | chr6.3:14888151-14888170 | None:intergenic | 50.0% |
| !! | CTTGGCTTTGAGGCCAAGTT+AGG | + | chr6.3:14887904-14887923 | None:intergenic | 50.0% |
| !! | TCTCCTAACTTTGAAGCCCC+GGG | - | chr6.3:14887517-14887536 | MS.gene80897:CDS | 50.0% |
| TTCCGGTTCAGCAAATCCCG+GGG | + | chr6.3:14887536-14887555 | None:intergenic | 55.0% | |
| !! | AGCCCCGGGATTTGCTGAAC+CGG | - | chr6.3:14887531-14887550 | MS.gene80897:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 14887373 | 14888218 | 14887373 | ID=MS.gene80897 |
| chr6.3 | mRNA | 14887373 | 14888218 | 14887373 | ID=MS.gene80897.t1;Parent=MS.gene80897 |
| chr6.3 | exon | 14887373 | 14888218 | 14887373 | ID=MS.gene80897.t1.exon1;Parent=MS.gene80897.t1 |
| chr6.3 | CDS | 14887373 | 14888218 | 14887373 | ID=cds.MS.gene80897.t1;Parent=MS.gene80897.t1 |
| Gene Sequence |
| Protein sequence |
