AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80936

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80936.t1 MTR_7g007540 91.803 122 10 0 140 261 1 122 4.02e-77 229
MS.gene80936.t1 MTR_7g007630 91.667 132 10 1 132 262 657 788 2.26e-75 244
MS.gene80936.t1 MTR_7g007630 55.882 136 51 3 1 133 16 145 1.49e-32 125
MS.gene80936.t1 MTR_7g407130 89.394 132 13 1 132 262 687 818 8.85e-73 238
MS.gene80936.t1 MTR_7g407130 66.667 138 37 4 1 133 1 134 2.87e-46 165
MS.gene80936.t1 MTR_7g007620 88.636 132 14 1 132 262 611 742 1.76e-65 217
MS.gene80936.t1 MTR_7g007620 66.418 134 38 2 1 134 1 127 4.50e-51 178
MS.gene80936.t1 MTR_7g007560 80.153 131 25 1 132 261 644 774 2.64e-64 214
MS.gene80936.t1 MTR_7g007560 78.947 133 20 2 1 133 1 125 2.46e-60 203
MS.gene80936.t1 MTR_0491s0030 89.394 132 13 1 132 262 695 826 9.69e-64 213
MS.gene80936.t1 MTR_0491s0030 67.647 136 32 3 1 136 1 124 1.02e-47 169
MS.gene80936.t1 MTR_8g047230 89.394 132 13 1 132 262 866 997 2.43e-63 214
MS.gene80936.t1 MTR_8g047230 59.859 142 56 1 1 141 16 157 5.13e-46 165
MS.gene80936.t1 MTR_8g047210 89.394 132 13 1 132 262 759 890 4.84e-63 212
MS.gene80936.t1 MTR_8g047210 63.433 134 48 1 1 133 1 134 5.45e-44 159
MS.gene80936.t1 MTR_8g047220 89.394 132 13 1 132 262 822 953 7.02e-63 212
MS.gene80936.t1 MTR_8g047220 63.433 134 48 1 1 133 16 149 6.43e-44 159
MS.gene80936.t1 MTR_7g407090 82.576 132 22 1 132 262 642 773 1.00e-60 204
MS.gene80936.t1 MTR_7g407090 71.429 133 31 2 1 133 1 126 5.13e-52 181
MS.gene80936.t1 MTR_7g009970 77.863 131 28 1 132 261 660 790 1.36e-60 204
MS.gene80936.t1 MTR_7g009970 55.639 133 49 2 1 133 16 138 6.06e-33 127
MS.gene80936.t1 MTR_7g010000 76.515 132 30 1 132 262 737 868 3.89e-60 204
MS.gene80936.t1 MTR_7g010000 58.955 134 45 2 1 134 1 124 3.47e-41 150
MS.gene80936.t1 MTR_7g013680 75.758 132 31 1 132 262 610 741 7.55e-58 196
MS.gene80936.t1 MTR_7g013680 52.817 142 57 3 1 141 1 133 1.06e-33 129
MS.gene80936.t1 MTR_7g007580 84.211 114 18 0 149 262 3 116 7.18e-56 175
MS.gene80936.t1 MTR_7g013350 66.667 129 42 1 132 259 286 414 1.98e-50 171
MS.gene80936.t1 MTR_7g013350 48.462 130 41 4 13 141 1 105 8.90e-25 102
MS.gene80936.t1 MTR_7g007550 63.043 138 43 2 1 134 1 134 1.44e-45 160
MS.gene80936.t1 MTR_0491s0020 63.433 134 48 1 1 133 16 149 3.41e-45 157
MS.gene80936.t1 MTR_7g010010 63.636 132 28 2 132 262 607 719 9.94e-45 160
MS.gene80936.t1 MTR_7g010010 48.936 141 58 4 24 159 4 135 6.07e-29 115
MS.gene80936.t1 MTR_8g047160 89.247 93 9 1 132 223 522 614 1.70e-40 147
MS.gene80936.t1 MTR_5g085700 49.580 119 55 2 135 249 915 1032 4.32e-28 113
MS.gene80936.t1 MTR_7g481630 54.717 106 43 2 135 236 75 179 8.99e-28 105
MS.gene80936.t1 MTR_1g039080 52.041 98 41 3 135 227 187 283 1.57e-27 107
MS.gene80936.t1 MTR_1g039310 46.154 104 50 2 129 227 1038 1140 1.74e-26 108
MS.gene80936.t1 MTR_4g037720 50.000 98 48 1 135 232 843 939 2.55e-26 108
MS.gene80936.t1 MTR_7g481590 54.717 106 43 2 135 236 198 302 3.85e-26 104
MS.gene80936.t1 MTR_7g009940 42.748 131 74 1 121 250 678 808 4.33e-26 107
MS.gene80936.t1 MTR_7g009940 33.077 130 73 3 2 131 8 123 2.27e-13 70.1
MS.gene80936.t1 MTR_7g081570 52.101 119 51 3 135 248 934 1051 4.42e-26 107
MS.gene80936.t1 MTR_1g039240 50.000 104 43 2 135 230 1053 1155 7.90e-26 106
MS.gene80936.t1 MTR_1g039220 52.885 104 40 2 135 230 1027 1129 8.02e-26 106
MS.gene80936.t1 MTR_1g038890 53.061 98 40 3 135 227 1028 1124 1.08e-25 106
MS.gene80936.t1 MTR_4g037015 48.000 100 51 1 135 234 772 870 1.68e-25 105
MS.gene80936.t1 MTR_7g028432 48.000 100 51 1 135 234 848 946 1.92e-25 105
MS.gene80936.t1 MTR_8g445960 45.918 98 47 2 135 227 58 154 6.46e-25 97.4
MS.gene80936.t1 MTR_8g044940 45.918 98 47 2 135 227 58 154 6.46e-25 97.4
MS.gene80936.t1 MTR_0400s0040 50.000 104 43 2 135 230 1053 1155 1.95e-24 102
MS.gene80936.t1 MTR_0365s0030 50.000 104 43 2 135 230 1053 1155 1.95e-24 102
MS.gene80936.t1 MTR_1g040615 49.038 104 44 2 135 230 2019 2121 3.35e-24 102
MS.gene80936.t1 MTR_1g040615 48.485 99 42 2 135 225 1020 1117 2.20e-23 99.8
MS.gene80936.t1 MTR_7g039330 53.608 97 42 3 135 229 1183 1278 4.13e-24 101
MS.gene80936.t1 MTR_7g081780 47.059 119 58 2 135 249 942 1059 4.22e-24 101
MS.gene80936.t1 MTR_7g045510 53.608 97 42 3 135 229 1085 1180 4.43e-24 101
MS.gene80936.t1 MTR_7g045710 52.688 93 42 2 135 227 966 1056 4.75e-24 101
MS.gene80936.t1 MTR_7g081410 47.541 122 58 3 135 251 941 1061 1.02e-23 100
MS.gene80936.t1 MTR_7g081410 47.541 122 58 3 135 251 821 941 1.17e-23 100
MS.gene80936.t1 MTR_7g081480 46.610 118 58 2 135 248 944 1060 1.25e-23 100
MS.gene80936.t1 MTR_1g040545 47.115 104 46 2 135 230 902 1004 1.64e-23 100
MS.gene80936.t1 MTR_1g040525 46.154 104 47 2 135 230 762 864 1.80e-23 99.8
MS.gene80936.t1 MTR_7g446160 52.941 102 42 3 135 231 882 982 2.43e-23 99.4
MS.gene80936.t1 MTR_7g081720 52.000 100 43 2 135 230 959 1057 4.38e-23 98.6
MS.gene80936.t1 MTR_7g096980 44.262 122 62 4 132 248 1099 1219 1.68e-22 97.1
MS.gene80936.t1 MTR_7g045860 45.918 98 50 2 135 230 978 1074 2.58e-22 96.3
MS.gene80936.t1 MTR_0400s0030 44.554 101 50 2 135 230 786 885 6.49e-21 92.4
MS.gene80936.t1 MTR_0365s0020 44.554 101 50 2 135 230 786 885 6.49e-21 92.4
MS.gene80936.t1 MTR_7g050990 48.515 101 43 3 135 227 814 913 1.29e-19 88.6
MS.gene80936.t1 MTR_7g051040 46.078 102 45 2 135 227 838 938 8.20e-19 86.3
MS.gene80936.t1 MTR_7g446190 42.529 87 44 2 135 216 810 895 1.62e-15 76.3
MS.gene80936.t1 MTR_2g070020 40.000 105 54 3 129 225 975 1078 2.35e-14 73.2
MS.gene80936.t1 MTR_4g097880 42.105 114 52 5 129 233 855 963 2.91e-14 72.8
MS.gene80936.t1 MTR_1g079520 39.252 107 54 4 129 225 934 1039 7.28e-14 71.6
MS.gene80936.t1 MTR_5g014700 41.228 114 53 5 129 233 858 966 1.97e-13 70.5
MS.gene80936.t1 MTR_1g040625 33.333 120 61 3 129 230 450 568 2.57e-13 69.7
MS.gene80936.t1 MTR_2g005810 38.889 108 53 4 129 227 853 956 1.44e-12 67.8
MS.gene80936.t1 MTR_1g047670 37.383 107 56 4 129 225 977 1082 2.95e-12 66.6
MS.gene80936.t1 MTR_1g097580 37.500 104 52 4 133 225 936 1037 4.97e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80936.t1 AT1G35710 47.475 99 50 2 132 229 1022 1119 5.29e-22 95.5
MS.gene80936.t1 AT4G08850 46.000 100 51 3 132 229 946 1044 3.04e-21 93.2
MS.gene80936.t1 AT2G33170 40.000 105 55 2 129 225 991 1095 7.09e-14 71.6
MS.gene80936.t1 AT2G33170 40.000 105 55 2 129 225 991 1095 7.09e-14 71.6
MS.gene80936.t1 AT3G49670 41.463 123 56 7 129 242 856 971 2.73e-13 70.1
MS.gene80936.t1 AT1G17230 37.500 112 60 4 129 232 965 1074 3.99e-13 69.3
MS.gene80936.t1 AT1G17230 38.095 105 56 3 129 225 965 1068 4.13e-13 69.3
MS.gene80936.t1 AT5G63930 33.077 130 76 4 104 225 948 1074 4.30e-13 69.3
MS.gene80936.t1 AT5G63930 33.077 130 76 4 104 225 884 1010 4.67e-13 69.3
MS.gene80936.t1 AT5G65700 38.519 135 59 6 129 244 860 989 5.13e-13 68.9
MS.gene80936.t1 AT5G65700 38.519 135 59 6 129 244 860 989 5.13e-13 68.9
MS.gene80936.t1 AT1G34420 40.000 95 52 2 135 225 866 959 2.88e-11 63.9

Find 39 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATAACTACGTCGTTATT+TGG 0.146856 7.3:-90167565 None:intergenic
GAGAGATGACCAATTTCTTT+TGG 0.234319 7.3:-90166027 None:intergenic
TCACTCAAAGGAATGCTTAA+TGG 0.247563 7.3:-90167694 None:intergenic
ATATCTCTGATCGTTGTAAT+TGG 0.255341 7.3:+90165824 MS.gene80936:CDS
TTGTCTAACAATTATCTTGC+AGG 0.289155 7.3:+90166069 MS.gene80936:CDS
GGGACTATCCCAAAAGAAAT+TGG 0.332555 7.3:+90166018 MS.gene80936:CDS
TGTGACACACGTTTCATTGT+TGG 0.385025 7.3:-90167649 None:intergenic
TGTGACATTTCAACTTCAAA+TGG 0.388205 7.3:+90165747 MS.gene80936:CDS
ATAAGTGATATTGATCTAGA+AGG 0.390604 7.3:+90165997 MS.gene80936:CDS
ATTATTTGCGGTTTGATTGT+CGG 0.412785 7.3:+90165706 MS.gene80936:CDS
ATTGCCTTTCTTATTATTTG+CGG 0.429911 7.3:+90165694 MS.gene80936:CDS
AAGTGTGATGTCTATAGTTT+TGG 0.434765 7.3:+90167424 MS.gene80936:CDS
GAAATATCTTGCAACGATGA+TGG 0.451064 7.3:+90165850 MS.gene80936:CDS
CTTTAGTTGGAAGGCACCCT+GGG 0.466628 7.3:+90167464 MS.gene80936:CDS
ACTTTAGTTGGAAGGCACCC+TGG 0.489256 7.3:+90167463 MS.gene80936:CDS
GCAAATGCTATATTGAATAG+TGG 0.491443 7.3:+90165772 MS.gene80936:CDS
TGCAGAGCTTGCTTATACAA+TGG 0.510359 7.3:+90167390 MS.gene80936:intron
ACTACGTCGTTATTTGGAAG+TGG 0.516663 7.3:-90167559 None:intergenic
TGCACTGAAATTTCACTCAA+AGG 0.524683 7.3:-90167706 None:intergenic
CAAACCGCAAATAATAAGAA+AGG 0.526329 7.3:-90165698 None:intergenic
TTCATTGTTGGTCGAGAACG+AGG 0.528233 7.3:-90167637 None:intergenic
ACATAGACATACACTATCCT+TGG 0.529873 7.3:+90165890 MS.gene80936:CDS
TGGTGGAACACTTCTGCTGT+AGG 0.531583 7.3:+90165796 MS.gene80936:CDS
CACTAGAAACTTTAGTTGGA+AGG 0.532025 7.3:+90167455 MS.gene80936:CDS
GTGGCACTAGAAACTTTAGT+TGG 0.533686 7.3:+90167451 MS.gene80936:CDS
TAAGTGATATTGATCTAGAA+GGG 0.544572 7.3:+90165998 MS.gene80936:CDS
ATAGTTGAGAGTAGACAAGT+TGG 0.550516 7.3:-90165944 None:intergenic
TAGACATACACTATCCTTGG+TGG 0.562699 7.3:+90165893 MS.gene80936:CDS
TGACATAATTCATGTTGTTG+TGG 0.568771 7.3:+90167588 MS.gene80936:CDS
TAGTTGAGAGTAGACAAGTT+GGG 0.571824 7.3:-90165943 None:intergenic
AGTGATGACAATAAATCCCC+AGG 0.580045 7.3:-90167481 None:intergenic
TAGTTTGACACTTTGTGTCG+AGG 0.595004 7.3:-90167512 None:intergenic
ATGCTATATTGAATAGTGGA+TGG 0.651288 7.3:+90165776 MS.gene80936:CDS
GTGATGACAATAAATCCCCA+GGG 0.663800 7.3:-90167480 None:intergenic
CTATATTGAATAGTGGATGG+TGG 0.665439 7.3:+90165779 MS.gene80936:CDS
GATCAATATCACTTATAACA+AGG 0.669940 7.3:-90165990 None:intergenic
TGAGATAGTTCATTCCACCA+AGG 0.696201 7.3:-90165907 None:intergenic
TATTTGGAAGTGGAAGACGT+TGG 0.700311 7.3:-90167549 None:intergenic
TTTAGTTGGAAGGCACCCTG+GGG 0.725104 7.3:+90167465 MS.gene80936:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAATGATTAATTTACC+AGG - chr7.3:90167200-90167219 None:intergenic 20.0%
!! ATTGTATAAATCTGACAATT+TGG - chr7.3:90166372-90166391 None:intergenic 20.0%
!!! TTTTGTATATGGAATTATGA+TGG + chr7.3:90166618-90166637 MS.gene80936:intron 20.0%
! AAACATATTGTGAAGCTTTA+TGG + chr7.3:90166852-90166871 MS.gene80936:intron 25.0%
! AACTCAACAAAAACAAAGAA+TGG + chr7.3:90166588-90166607 MS.gene80936:intron 25.0%
! AATAATCTCCAATATGAGAA+GGG - chr7.3:90166245-90166264 None:intergenic 25.0%
! ATAAATCTGACAATTTGGAA+TGG - chr7.3:90166367-90166386 None:intergenic 25.0%
! ATAAGTGATATTGATCTAGA+AGG + chr7.3:90165997-90166016 MS.gene80936:CDS 25.0%
! ATTGCCTTTCTTATTATTTG+CGG + chr7.3:90165694-90165713 MS.gene80936:CDS 25.0%
! ATTTCATACAATTGTTTGGA+GGG + chr7.3:90166339-90166358 MS.gene80936:intron 25.0%
! GATCAATATCACTTATAACA+AGG - chr7.3:90165993-90166012 None:intergenic 25.0%
! GTAAGATTCGTAAGAAAATT+AGG - chr7.3:90166174-90166193 None:intergenic 25.0%
! TAAGTGATATTGATCTAGAA+GGG + chr7.3:90165998-90166017 MS.gene80936:CDS 25.0%
! TAATAATCTCCAATATGAGA+AGG - chr7.3:90166246-90166265 None:intergenic 25.0%
! TCAGATTTATACAATGAACA+TGG + chr7.3:90166377-90166396 MS.gene80936:intron 25.0%
! TTAAGCAATAATAATCTCAC+TGG + chr7.3:90166276-90166295 MS.gene80936:intron 25.0%
!! ATGGAGATATGTTTTGTATA+TGG + chr7.3:90166607-90166626 MS.gene80936:intron 25.0%
!! GTTTTTGATCTATCAATACA+TGG + chr7.3:90166899-90166918 MS.gene80936:intron 25.0%
!! TAAATCTGACAATTTGGAAT+GGG - chr7.3:90166366-90166385 None:intergenic 25.0%
AATAGACATTACAGAGAGAT+TGG - chr7.3:90166311-90166330 None:intergenic 30.0%
ATAGACATTACAGAGAGATT+GGG - chr7.3:90166310-90166329 None:intergenic 30.0%
ATATCTCTGATCGTTGTAAT+TGG + chr7.3:90165824-90165843 MS.gene80936:CDS 30.0%
ATCTATCAATACATGGAGAA+AGG + chr7.3:90166906-90166925 MS.gene80936:intron 30.0%
ATTATTTGCGGTTTGATTGT+CGG + chr7.3:90165706-90165725 MS.gene80936:CDS 30.0%
ATTTGAGAAGTGAAAAGACT+GGG - chr7.3:90166527-90166546 None:intergenic 30.0%
CAAACCGCAAATAATAAGAA+AGG - chr7.3:90165701-90165720 None:intergenic 30.0%
CATTTCATACAATTGTTTGG+AGG + chr7.3:90166338-90166357 MS.gene80936:intron 30.0%
GCAAATGCTATATTGAATAG+TGG + chr7.3:90165772-90165791 MS.gene80936:CDS 30.0%
GGACATTTCATACAATTGTT+TGG + chr7.3:90166335-90166354 MS.gene80936:intron 30.0%
TCTCTGTAATGTCTATTATG+TGG + chr7.3:90166314-90166333 MS.gene80936:intron 30.0%
TGACATAATTCATGTTGTTG+TGG + chr7.3:90167588-90167607 MS.gene80936:CDS 30.0%
TGTGACATTTCAACTTCAAA+TGG + chr7.3:90165747-90165766 MS.gene80936:CDS 30.0%
TTGTCTAACAATTATCTTGC+AGG + chr7.3:90166069-90166088 MS.gene80936:CDS 30.0%
! AAGTGTGATGTCTATAGTTT+TGG + chr7.3:90167424-90167443 MS.gene80936:CDS 30.0%
! AGAGATGACCAATTTCTTTT+GGG - chr7.3:90166029-90166048 None:intergenic 30.0%
! ATGCTATATTGAATAGTGGA+TGG + chr7.3:90165776-90165795 MS.gene80936:CDS 30.0%
! GAACATGTATGTTACTTATG+TGG - chr7.3:90167293-90167312 None:intergenic 30.0%
!!! TTTTTTTTGTGTGATGACCA+AGG - chr7.3:90166450-90166469 None:intergenic 30.0%
AAAAGGGTTAACACCGTTAA+AGG + chr7.3:90166984-90167003 MS.gene80936:intron 35.0%
ACATAGACATACACTATCCT+TGG + chr7.3:90165890-90165909 MS.gene80936:CDS 35.0%
ACTATAGTTGCTGGAACTAT+TGG + chr7.3:90167164-90167183 MS.gene80936:intron 35.0%
ACTATTGGATATATAGCTCC+TGG + chr7.3:90167179-90167198 MS.gene80936:intron 35.0%
AGCAAATGCAACTCCTTTAA+CGG - chr7.3:90167000-90167019 None:intergenic 35.0%
ATAGCCGTGAAGTTTCTTTA+AGG - chr7.3:90166763-90166782 None:intergenic 35.0%
ATAGTTGAGAGTAGACAAGT+TGG - chr7.3:90165947-90165966 None:intergenic 35.0%
ATATCTTGCTAAACTCTGAG+TGG + chr7.3:90167081-90167100 MS.gene80936:intron 35.0%
ATGAGATATTGCATTGGAAC+AGG + chr7.3:90166687-90166706 MS.gene80936:intron 35.0%
ATGTATGTCCCATTCCAAAT+TGG + chr7.3:90166409-90166428 MS.gene80936:intron 35.0%
CAAATCAAGATCAGTGAGTT+TGG - chr7.3:90166124-90166143 None:intergenic 35.0%
CACTAGAAACTTTAGTTGGA+AGG + chr7.3:90167455-90167474 MS.gene80936:CDS 35.0%
CATTTGAGAAGTGAAAAGAC+TGG - chr7.3:90166528-90166547 None:intergenic 35.0%
CGTATAACTACGTCGTTATT+TGG - chr7.3:90167568-90167587 None:intergenic 35.0%
CTGAAACTCTCATCAAAAGA+TGG - chr7.3:90166798-90166817 None:intergenic 35.0%
GAAATATCTTGCAACGATGA+TGG + chr7.3:90165850-90165869 MS.gene80936:CDS 35.0%
GATTCGTAAGAAAATTAGGC+AGG - chr7.3:90166170-90166189 None:intergenic 35.0%
GGAATTCAAGTGGAGAAAAA+GGG + chr7.3:90166968-90166987 MS.gene80936:intron 35.0%
GTTGCCTTAAAGAAACTTCA+CGG + chr7.3:90166756-90166775 MS.gene80936:intron 35.0%
TAGACATTACAGAGAGATTG+GGG - chr7.3:90166309-90166328 None:intergenic 35.0%
TAGTTGAGAGTAGACAAGTT+GGG - chr7.3:90165946-90165965 None:intergenic 35.0%
TCACTCAAAGGAATGCTTAA+TGG - chr7.3:90167697-90167716 None:intergenic 35.0%
TGCACTGAAATTTCACTCAA+AGG - chr7.3:90167709-90167728 None:intergenic 35.0%
TGGAATTCAAGTGGAGAAAA+AGG + chr7.3:90166967-90166986 MS.gene80936:intron 35.0%
TTCGACATGAGATATTGCAT+TGG + chr7.3:90166681-90166700 MS.gene80936:intron 35.0%
TTGTCTCACAATAGACTCAA+TGG + chr7.3:90166141-90166160 MS.gene80936:intron 35.0%
! GAGAGATGACCAATTTCTTT+TGG - chr7.3:90166030-90166049 None:intergenic 35.0%
! TTTGTATGATGATGTGGAAG+CGG + chr7.3:90166944-90166963 MS.gene80936:intron 35.0%
!! AGCATATGGAAGTGTTTACA+AGG + chr7.3:90166710-90166729 MS.gene80936:intron 35.0%
!! CTATATTGAATAGTGGATGG+TGG + chr7.3:90165779-90165798 MS.gene80936:CDS 35.0%
!! CTCTGTTTTGTATGATGATG+TGG + chr7.3:90166938-90166957 MS.gene80936:intron 35.0%
!! GTGAGATTTTCTAGTGAAGT+AGG - chr7.3:90166102-90166121 None:intergenic 35.0%
!! TGTGTCACAAAGTTTTGTCA+CGG + chr7.3:90167663-90167682 MS.gene80936:CDS 35.0%
!!! TGTCTATAGTTTTGGTGTAG+TGG + chr7.3:90167432-90167451 MS.gene80936:CDS 35.0%
AAGGGATTTGACCACTAATG+AGG - chr7.3:90166227-90166246 None:intergenic 40.0%
ACTACGTCGTTATTTGGAAG+TGG - chr7.3:90167562-90167581 None:intergenic 40.0%
AGACTGGGACTAGAAGAATA+AGG - chr7.3:90166512-90166531 None:intergenic 40.0%
AGTGATGACAATAAATCCCC+AGG - chr7.3:90167484-90167503 None:intergenic 40.0%
ATCAGTCACAACCTCATTAG+TGG + chr7.3:90166213-90166232 MS.gene80936:intron 40.0%
ATGTCCCATTCCAAATTGGA+GGG + chr7.3:90166413-90166432 MS.gene80936:intron 40.0%
CTCATCAAAAGATGGAACCT+CGG - chr7.3:90166790-90166809 None:intergenic 40.0%
GATACATCTCGATGCACTAT+TGG - chr7.3:90167053-90167072 None:intergenic 40.0%
GGGACTAGAAGAATAAGGAT+CGG - chr7.3:90166507-90166526 None:intergenic 40.0%
GGGACTATCCCAAAAGAAAT+TGG + chr7.3:90166018-90166037 MS.gene80936:CDS 40.0%
GGTCAAATCCCTTCTCATAT+TGG + chr7.3:90166234-90166253 MS.gene80936:intron 40.0%
GTGATGACAATAAATCCCCA+GGG - chr7.3:90167483-90167502 None:intergenic 40.0%
GTGGCACTAGAAACTTTAGT+TGG + chr7.3:90167451-90167470 MS.gene80936:CDS 40.0%
TACAAGGCACAATTACCAAG+TGG + chr7.3:90166726-90166745 MS.gene80936:intron 40.0%
TAGACATACACTATCCTTGG+TGG + chr7.3:90165893-90165912 MS.gene80936:CDS 40.0%
TAGTTTGACACTTTGTGTCG+AGG - chr7.3:90167515-90167534 None:intergenic 40.0%
TATGTCCCATTCCAAATTGG+AGG + chr7.3:90166412-90166431 MS.gene80936:intron 40.0%
TATTTGGAAGTGGAAGACGT+TGG - chr7.3:90167552-90167571 None:intergenic 40.0%
TCCAATCGAACTATAGTTGC+TGG + chr7.3:90167155-90167174 MS.gene80936:intron 40.0%
TCCAGCAACTATAGTTCGAT+TGG - chr7.3:90167159-90167178 None:intergenic 40.0%
TGAGATAGTTCATTCCACCA+AGG - chr7.3:90165910-90165929 None:intergenic 40.0%
TGTGACACACGTTTCATTGT+TGG - chr7.3:90167652-90167671 None:intergenic 40.0%
! TGCAGAGCTTGCTTATACAA+TGG + chr7.3:90167390-90167409 MS.gene80936:intron 40.0%
CAGGCTAGTGTTTGTGACTT+TGG + chr7.3:90167104-90167123 MS.gene80936:intron 45.0%
CTATTGGAGCAGTGCAATCA+TGG - chr7.3:90167037-90167056 None:intergenic 45.0%
GTGATGACCAAGGCTGAAAT+GGG - chr7.3:90166440-90166459 None:intergenic 45.0%
TGAAATGGGACCCTCCAATT+TGG - chr7.3:90166426-90166445 None:intergenic 45.0%
TGAGGTTGTGACTGATGTCA+AGG - chr7.3:90166209-90166228 None:intergenic 45.0%
TGTGATGACCAAGGCTGAAA+TGG - chr7.3:90166441-90166460 None:intergenic 45.0%
TTCATTGTTGGTCGAGAACG+AGG - chr7.3:90167640-90167659 None:intergenic 45.0%
! TGCATTGGAACAGGAGCATA+TGG + chr7.3:90166696-90166715 MS.gene80936:intron 45.0%
AAGGCAACAACCTTGCCACT+TGG - chr7.3:90166744-90166763 None:intergenic 50.0%
CTTGCTAAACTCTGAGTGGC+AGG + chr7.3:90167085-90167104 MS.gene80936:intron 50.0%
GGCACAATTACCAAGTGGCA+AGG + chr7.3:90166731-90166750 MS.gene80936:intron 50.0%
TGGAAGCGGTGGAATTCAAG+TGG + chr7.3:90166958-90166977 MS.gene80936:intron 50.0%
TGGGACCCTCCAATTTGGAA+TGG - chr7.3:90166421-90166440 None:intergenic 50.0%
TGGTGGAACACTTCTGCTGT+AGG + chr7.3:90165796-90165815 MS.gene80936:CDS 50.0%
! GGGACCCTCCAATTTGGAAT+GGG - chr7.3:90166420-90166439 None:intergenic 50.0%
! GTATGATGATGTGGAAGCGG+TGG + chr7.3:90166947-90166966 MS.gene80936:intron 50.0%
!! ACTTTAGTTGGAAGGCACCC+TGG + chr7.3:90167463-90167482 MS.gene80936:CDS 50.0%
!! CTTTAGTTGGAAGGCACCCT+GGG + chr7.3:90167464-90167483 MS.gene80936:CDS 50.0%
!! TTTAGTTGGAAGGCACCCTG+GGG + chr7.3:90167465-90167484 MS.gene80936:CDS 50.0%
ACTTCACGGCTATGAAGCCG+AGG + chr7.3:90166770-90166789 MS.gene80936:intron 55.0%
GGAGGGTCCCATTTCAGCCT+TGG + chr7.3:90166430-90166449 MS.gene80936:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 90165688 90167780 90165688 ID=MS.gene80936
chr7.3 mRNA 90165688 90167780 90165688 ID=MS.gene80936.t1;Parent=MS.gene80936
chr7.3 exon 90165688 90166090 90165688 ID=MS.gene80936.t1.exon1;Parent=MS.gene80936.t1
chr7.3 CDS 90165688 90166090 90165688 ID=cds.MS.gene80936.t1;Parent=MS.gene80936.t1
chr7.3 exon 90167395 90167780 90167395 ID=MS.gene80936.t1.exon2;Parent=MS.gene80936.t1
chr7.3 CDS 90167395 90167780 90167395 ID=cds.MS.gene80936.t1;Parent=MS.gene80936.t1
Gene Sequence

>MS.gene80936

ATGTGGATTGCCTTTCTTATTATTTGCGGTTTGATTGTCGGAACTCAGTCTTCTGCTACTGTGACATTTCAACTTCAAATGGAAGCAAATGCTATATTGAATAGTGGATGGTGGAACACTTCTGCTGTAGGCTTCAATATCTCTGATCGTTGTAATTGGTTTGAAATATCTTGCAACGATGATGGAAGCATAAAAGCAATCAACATAGACATACACTATCCTTGGTGGAATGAACTATCTCAACTTGCTGCAACACCCAACTTGTCTACTCTCAACTATTCTGCTTTTAACAATTTAGAAAGCCTTGTTATAAGTGATATTGATCTAGAAGGGACTATCCCAAAAGAAATTGGTCATCTCTCTAAGCTCACTTATCTTGATTTGTCTAACAATTATCTTGCAGGTGAGATGCCTACTTCACTAGAAAATCTCACCAAACTCACTGATCTTGATTTGTCTCACAATAGACTCAATGGAAACCTGCCTAATTTTCTTACGAATCTTACACAATTAGAATACCTTGACATCAGTCACAACCTCATTAGTGGTCAAATCCCTTCTCATATTGGAGATTATTACACACTTAATTTAAGCAATAATAATCTCACTGGAACAATTCCCCAATCTCTCTGTAATGTCTATTATGTGGACATTTCATACAATTGTTTGGAGGGTCCCATTCCAAATTGTCAGATTTATACAATGAACATGGAAAACTCTGATGTATGTCCCATTCCAAATTGGAGGGTCCCATTTCAGCCTTGGTCATCACACAAAAAAAATATTAAATTAAATCACATTGTTGTCATTGTTCTTCCGATCCTTATTCTTCTAGTCCCAGTCTTTTCACTTCTCAAATGTTTGAATCGTCATCATATTTCTACTAACAAGTTGAATGAAAACTCAACAAAAACAAAGAATGGAGATATGTTTTGTATATGGAATTATGATGGAAAGATAGCATATGATGACATTATCAAAGCAACAGAAGACTTCGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCAAGTGGCAAGGTTGTTGCCTTAAAGAAACTTCACGGCTATGAAGCCGAGGTTCCATCTTTTGATGAGAGTTTCAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACAAACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTTTTGTATGATGATGTGGAAGCGGTGGAATTCAAGTGGAGAAAAAGGGTTAACACCGTTAAAGGAGTTGCATTTGCTATTTCGTATCTTCACCATGATTGCACTGCTCCAATAGTGCATCGAGATGTATCTACTAGCAATATCTTGCTAAACTCTGAGTGGCAGGCTAGTGTTTGTGACTTTGGCACAGCTCGACTACTTCAATATGATTCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATAGCTCCTGGTAAATTAATCATTGTTATTTTTTTTCTGTCTTGTTCTGTTTTTTCTGTTCTTCATTTTTATATGATGCACAACATGCATATTCATAATCCACATAAGTAACATACATGTTCATTACTTTTTCATGCTAAATAGTAATTTTCAATTATTTTCTTTTGATTCTTTTAAATACTCGTGATTATTTGATCAATGCAGAGCTTGCTTATACAATGGCTGTGAATGAAAAGTGTGATGTCTATAGTTTTGGTGTAGTGGCACTAGAAACTTTAGTTGGAAGGCACCCTGGGGATTTATTGTCATCACTTCAATCAACCTCGACACAAAGTGTCAAACTATGTCAAGTATTAGACCAACGTCTTCCACTTCCAAATAACGACGTAGTTATACGTGACATAATTCATGTTGTTGTGGTTGCATTTGCATGCTTAAATATCAATCCTCGTTCTCGACCAACAATGAAACGTGTGTCACAAAGTTTTGTCACGGAGCTCACACCATTAAGCATTCCTTTGAGTGAAATTTCAGTGCATCAACTAATGAGTGAAGAACTCAAAGCATTATTTTATATTGCGAACCCTTGA
Protein sequence

>MS.gene80936.t1

MWIAFLIICGLIVGTQSSATVTFQLQMEANAILNSGWWNTSAVGFNISDRCNWFEISCNDDGSIKAINIDIHYPWWNELSQLAATPNLSTLNYSAFNNLESLVISDIDLEGTIPKEIGHLSKLTYLDLSNNYLAELAYTMAVNEKCDVYSFGVVALETLVGRHPGDLLSSLQSTSTQSVKLCQVLDQRLPLPNNDVVIRDIIHVVVVAFACLNINPRSRPTMKRVSQSFVTELTPLSIPLSEISVHQLMSEELKALFYIANP