Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81160.t1 | RYR25375.1 | 83.3 | 54 | 9 | 0 | 76 | 129 | 113 | 166 | 2.20E-20 | 108.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81160.t1 | C0LGV1 | 53.1 | 49 | 22 | 1 | 81 | 129 | 889 | 936 | 1.5e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81160.t1 | A0A445AG27 | 83.3 | 54 | 9 | 0 | 76 | 129 | 113 | 166 | 1.6e-20 | 108.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81160.t1 | MTR_8g016120 | 88.889 | 54 | 6 | 0 | 76 | 129 | 493 | 546 | 4.19e-29 | 110 |
| MS.gene81160.t1 | MTR_8g016120 | 88.889 | 54 | 6 | 0 | 76 | 129 | 493 | 546 | 5.41e-28 | 107 |
| MS.gene81160.t1 | MTR_2g100290 | 88.889 | 54 | 6 | 0 | 76 | 129 | 495 | 548 | 1.67e-27 | 106 |
| MS.gene81160.t1 | MTR_8g101670 | 75.926 | 54 | 13 | 0 | 76 | 129 | 480 | 533 | 1.86e-22 | 91.7 |
| MS.gene81160.t1 | MTR_8g101670 | 75.926 | 54 | 13 | 0 | 76 | 129 | 492 | 545 | 1.92e-22 | 91.7 |
| MS.gene81160.t1 | MTR_8g101670 | 75.926 | 54 | 13 | 0 | 76 | 129 | 492 | 545 | 1.98e-22 | 91.7 |
| MS.gene81160.t1 | MTR_1g021570 | 66.667 | 54 | 18 | 0 | 76 | 129 | 348 | 401 | 5.29e-20 | 84.7 |
| MS.gene81160.t1 | MTR_1g021570 | 66.667 | 54 | 18 | 0 | 76 | 129 | 360 | 413 | 5.91e-20 | 84.7 |
| MS.gene81160.t1 | MTR_1g021570 | 71.429 | 49 | 14 | 0 | 81 | 129 | 508 | 556 | 1.97e-19 | 83.2 |
| MS.gene81160.t1 | MTR_1g021570 | 66.667 | 54 | 18 | 0 | 76 | 129 | 503 | 556 | 2.34e-19 | 82.8 |
| MS.gene81160.t1 | MTR_3g088855 | 59.184 | 49 | 20 | 0 | 81 | 129 | 403 | 451 | 2.07e-14 | 68.9 |
| MS.gene81160.t1 | MTR_8g042370 | 51.786 | 56 | 23 | 1 | 74 | 129 | 197 | 248 | 7.66e-13 | 64.3 |
| MS.gene81160.t1 | MTR_3g011730 | 50.000 | 56 | 24 | 1 | 74 | 129 | 398 | 449 | 6.40e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81160.t1 | AT5G56790 | 84.615 | 52 | 8 | 0 | 78 | 129 | 480 | 531 | 6.55e-25 | 99.0 |
| MS.gene81160.t1 | AT3G13690 | 81.481 | 54 | 10 | 0 | 76 | 129 | 499 | 552 | 3.57e-24 | 96.7 |
| MS.gene81160.t1 | AT3G13690 | 81.481 | 54 | 10 | 0 | 76 | 129 | 499 | 552 | 3.57e-24 | 96.7 |
| MS.gene81160.t1 | AT3G13690 | 81.481 | 54 | 10 | 0 | 76 | 129 | 499 | 552 | 3.57e-24 | 96.7 |
| MS.gene81160.t1 | AT1G55200 | 79.630 | 54 | 11 | 0 | 76 | 129 | 467 | 520 | 5.88e-24 | 96.3 |
| MS.gene81160.t1 | AT1G55200 | 79.630 | 54 | 11 | 0 | 76 | 129 | 467 | 520 | 5.88e-24 | 96.3 |
| MS.gene81160.t1 | AT1G55200 | 79.630 | 54 | 11 | 0 | 76 | 129 | 467 | 520 | 5.88e-24 | 96.3 |
| MS.gene81160.t1 | AT1G55200 | 79.630 | 54 | 11 | 0 | 76 | 129 | 467 | 520 | 5.88e-24 | 96.3 |
Find 27 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAATCCTCGATAAATTT+TGG | 0.153091 | 6.1:+54932288 | None:intergenic |
| CCATACTCGCCATGCGATAA+TGG | 0.314928 | 6.1:+54931655 | None:intergenic |
| TTCCATGCAGACCATTCTAA+TGG | 0.318287 | 6.1:+54930981 | None:intergenic |
| CCATTATCGCATGGCGAGTA+TGG | 0.348003 | 6.1:-54931655 | MS.gene81160:CDS |
| CTTTCTACTCCTTATGCAGC+AGG | 0.438409 | 6.1:-54931689 | MS.gene81160:CDS |
| TGAGTTATGAGAATATTGTT+TGG | 0.438936 | 6.1:+54930873 | None:intergenic |
| AACTCATGATTTCGAACCTC+TGG | 0.450231 | 6.1:-54930856 | MS.gene81160:CDS |
| TCTACATCGCCTGCTGCATA+AGG | 0.470344 | 6.1:+54931680 | None:intergenic |
| ATCTTGCCCCACCTTTGTTG+TGG | 0.479095 | 6.1:+54932214 | None:intergenic |
| GACATATTTCAGGGCGGCAA+AGG | 0.482873 | 6.1:-54931007 | MS.gene81160:intron |
| ACATATTTCAGGGCGGCAAA+GGG | 0.511698 | 6.1:-54931006 | MS.gene81160:intron |
| TCGTGGTAAAGAGGAGTTCA+AGG | 0.513271 | 6.1:-54931729 | MS.gene81160:CDS |
| TTGAAGCTGCTCGTGGGTCA+AGG | 0.528611 | 6.1:-54930947 | MS.gene81160:CDS |
| CTTCATGAAGAGTGCAGAGT+AGG | 0.555006 | 6.1:-54930921 | MS.gene81160:CDS |
| ATCCATTAGAATGGTCTGCA+TGG | 0.574293 | 6.1:-54930983 | MS.gene81160:CDS |
| TATTGTTTGGCCTCATGTCA+CGG | 0.582504 | 6.1:+54930886 | None:intergenic |
| GGCAAAGGGATCCATTAGAA+TGG | 0.584006 | 6.1:-54930992 | MS.gene81160:CDS |
| ATTGTTGTTGAAGCTGCTCG+TGG | 0.596578 | 6.1:-54930954 | MS.gene81160:CDS |
| TTTGCTTCCAAAATTTATCG+AGG | 0.601085 | 6.1:-54932295 | MS.gene81160:CDS |
| ATCATCGGAGGTGCCGTCCG+AGG | 0.609217 | 6.1:-54932269 | MS.gene81160:CDS |
| GTATCGTCCACCGTGACATG+AGG | 0.619582 | 6.1:-54930896 | MS.gene81160:CDS |
| ATGTAGATGCCATTATCGCA+TGG | 0.630812 | 6.1:-54931664 | MS.gene81160:CDS |
| AATTTATCGAGGATTATCAT+CGG | 0.633560 | 6.1:-54932284 | MS.gene81160:CDS |
| TTATCGAGGATTATCATCGG+AGG | 0.689461 | 6.1:-54932281 | MS.gene81160:CDS |
| TTGTTGTTGAAGCTGCTCGT+GGG | 0.690442 | 6.1:-54930953 | MS.gene81160:CDS |
| AGGCAGAACTAACGTACCAG+AGG | 0.706523 | 6.1:+54930840 | None:intergenic |
| TGTTTGGCCTCATGTCACGG+TGG | 0.744473 | 6.1:+54930889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAATTAATTTAAG+TGG | - | chr6.1:54931694-54931713 | MS.gene81160:CDS | 10.0% |
| !! | ATTATTAATATAAATGAGTT+AGG | - | chr6.1:54931036-54931055 | MS.gene81160:intron | 10.0% |
| !!! | ATTTATTTTTTGATATTGAT+GGG | - | chr6.1:54932281-54932300 | MS.gene81160:CDS | 10.0% |
| !!! | TATTTATTTTTTGATATTGA+TGG | - | chr6.1:54932280-54932299 | MS.gene81160:CDS | 10.0% |
| !! | CATGTTATACATTATTATAT+AGG | + | chr6.1:54932200-54932219 | None:intergenic | 15.0% |
| !! | AAAAACACATATGTTATGTT+TGG | - | chr6.1:54930385-54930404 | MS.gene81160:intron | 20.0% |
| !! | AAAACACATATGTTATGTTT+GGG | - | chr6.1:54930386-54930405 | MS.gene81160:intron | 20.0% |
| !! | AATAATAACTATCTCAGATA+TGG | - | chr6.1:54932112-54932131 | MS.gene81160:intron | 20.0% |
| !! | AATAGTAAAGTTGAATATGA+TGG | - | chr6.1:54930427-54930446 | MS.gene81160:intron | 20.0% |
| !! | ATCATGAGATAATTTAGTAT+TGG | + | chr6.1:54931167-54931186 | None:intergenic | 20.0% |
| !! | ATCATTAAACAATTGGAAAA+TGG | - | chr6.1:54931291-54931310 | MS.gene81160:intron | 20.0% |
| !! | TATCTATGTCATAAATACAA+AGG | + | chr6.1:54930927-54930946 | None:intergenic | 20.0% |
| !! | TCATGAGATAATTTAGTATT+GGG | + | chr6.1:54931166-54931185 | None:intergenic | 20.0% |
| !! | TCATTAAACAATTGGAAAAT+GGG | - | chr6.1:54931292-54931311 | MS.gene81160:intron | 20.0% |
| !! | TTAATATAAATGAGTTAGGA+TGG | - | chr6.1:54931040-54931059 | MS.gene81160:intron | 20.0% |
| !!! | ATGATAATGGTGTTTTTTAT+TGG | + | chr6.1:54931631-54931650 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATTGTTTAATGA+TGG | + | chr6.1:54931292-54931311 | None:intergenic | 20.0% |
| ! | AAACACATATGTTATGTTTG+GGG | - | chr6.1:54930387-54930406 | MS.gene81160:intron | 25.0% |
| ! | AACACAATTTGTAATTGAGA+TGG | + | chr6.1:54932019-54932038 | None:intergenic | 25.0% |
| ! | AATTTATCGAGGATTATCAT+CGG | - | chr6.1:54930153-54930172 | MS.gene81160:intron | 25.0% |
| ! | CAATAGTGAAGTAATGATAA+TGG | + | chr6.1:54931644-54931663 | None:intergenic | 25.0% |
| ! | TATGATGTATTCTGGATAAT+TGG | - | chr6.1:54930861-54930880 | MS.gene81160:CDS | 25.0% |
| ! | TCAATTAATTTAAGTGGATG+TGG | - | chr6.1:54931700-54931719 | MS.gene81160:CDS | 25.0% |
| ! | TCATTGGATTCACATTTATA+TGG | - | chr6.1:54931126-54931145 | MS.gene81160:intron | 25.0% |
| ! | TCTAACCATCATTAAACAAT+TGG | - | chr6.1:54931284-54931303 | MS.gene81160:intron | 25.0% |
| ! | TGAGTTATGAGAATATTGTT+TGG | + | chr6.1:54931567-54931586 | None:intergenic | 25.0% |
| ! | TTTACTTACCAAAAGATGAA+GGG | - | chr6.1:54931735-54931754 | MS.gene81160:intron | 25.0% |
| ! | TTTCGATTTATGATGTATTC+TGG | - | chr6.1:54930853-54930872 | MS.gene81160:CDS | 25.0% |
| !! | TGATAATCCTCGATAAATTT+TGG | + | chr6.1:54930152-54930171 | None:intergenic | 25.0% |
| !!! | ATAGTTTTATATATGTGCGT+AGG | - | chr6.1:54930275-54930294 | MS.gene81160:intron | 25.0% |
| !!! | GTTTTTTATTGGCAAAAAGA+AGG | + | chr6.1:54931620-54931639 | None:intergenic | 25.0% |
| !!! | TAGTTTTATATATGTGCGTA+GGG | - | chr6.1:54930276-54930295 | MS.gene81160:intron | 25.0% |
| !!! | TTATCTATGTTTTTAGATCG+TGG | - | chr6.1:54930691-54930710 | MS.gene81160:intron | 25.0% |
| AAACACAAGACAAGAAAACA+TGG | + | chr6.1:54930672-54930691 | None:intergenic | 30.0% | |
| AACACAAGACAAGAAAACAT+GGG | + | chr6.1:54930671-54930690 | None:intergenic | 30.0% | |
| ACTAGAGTAATTGGAACATT+TGG | - | chr6.1:54931894-54931913 | MS.gene81160:intron | 30.0% | |
| ATCCCAATTTATATCCTGTA+GGG | + | chr6.1:54930311-54930330 | None:intergenic | 30.0% | |
| CAAAAAAACCTAGACAGATA+AGG | + | chr6.1:54931253-54931272 | None:intergenic | 30.0% | |
| CATCTTCAAGTATATCTCTT+AGG | + | chr6.1:54930517-54930536 | None:intergenic | 30.0% | |
| CGAATACTTGACATATTTCA+GGG | - | chr6.1:54931421-54931440 | MS.gene81160:intron | 30.0% | |
| CTAGAGTAATTGGAACATTT+GGG | - | chr6.1:54931895-54931914 | MS.gene81160:intron | 30.0% | |
| CTCTCTATTGAAAATTACAG+AGG | + | chr6.1:54931016-54931035 | None:intergenic | 30.0% | |
| GAAGATGATAGATATACTTC+AGG | - | chr6.1:54930530-54930549 | MS.gene81160:intron | 30.0% | |
| GTTTACTTACCAAAAGATGA+AGG | - | chr6.1:54931734-54931753 | MS.gene81160:intron | 30.0% | |
| GTTTATGAGTACAAATGCAA+TGG | - | chr6.1:54931102-54931121 | MS.gene81160:intron | 30.0% | |
| TATATTCTCCACGATACATT+TGG | - | chr6.1:54931341-54931360 | MS.gene81160:intron | 30.0% | |
| TCGAATACTTGACATATTTC+AGG | - | chr6.1:54931420-54931439 | MS.gene81160:intron | 30.0% | |
| TTACATACAGGTTTAACAGA+GGG | + | chr6.1:54930639-54930658 | None:intergenic | 30.0% | |
| TTTACATACAGGTTTAACAG+AGG | + | chr6.1:54930640-54930659 | None:intergenic | 30.0% | |
| TTTGCTTCCAAAATTTATCG+AGG | - | chr6.1:54930142-54930161 | MS.gene81160:intron | 30.0% | |
| ! | GATAGCTAAGTTGAATATGA+TGG | - | chr6.1:54930455-54930474 | MS.gene81160:intron | 30.0% |
| !! | TCTAAAATATATGCTGACTC+AGG | + | chr6.1:54930359-54930378 | None:intergenic | 30.0% |
| !!! | CTTTTGAGGTCTTATCTTTT+GGG | - | chr6.1:54930828-54930847 | MS.gene81160:intron | 30.0% |
| !!! | TCTTTTGAGGTCTTATCTTT+TGG | - | chr6.1:54930827-54930846 | MS.gene81160:intron | 30.0% |
| AAGCCCTACAGGATATAAAT+TGG | - | chr6.1:54930305-54930324 | MS.gene81160:intron | 35.0% | |
| AGCCCTACAGGATATAAATT+GGG | - | chr6.1:54930306-54930325 | MS.gene81160:intron | 35.0% | |
| ATACTTGACATATTTCAGGG+CGG | - | chr6.1:54931424-54931443 | MS.gene81160:intron | 35.0% | |
| ATGAGTTAGGATGGTCATTA+AGG | - | chr6.1:54931049-54931068 | MS.gene81160:intron | 35.0% | |
| ATTCTAGTCCTTATCTGTCT+AGG | - | chr6.1:54931242-54931261 | MS.gene81160:intron | 35.0% | |
| ATTTATATCCTGTAGGGCTT+AGG | + | chr6.1:54930305-54930324 | None:intergenic | 35.0% | |
| CATCCCAATTTATATCCTGT+AGG | + | chr6.1:54930312-54930331 | None:intergenic | 35.0% | |
| GAATTGTGCTGAAATATGCA+AGG | - | chr6.1:54931818-54931837 | MS.gene81160:intron | 35.0% | |
| GTACAAATGCAATGGATCAT+TGG | - | chr6.1:54931110-54931129 | MS.gene81160:intron | 35.0% | |
| TACATACAGGTTTAACAGAG+GGG | + | chr6.1:54930638-54930657 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTGTCCACAACAA+AGG | - | chr6.1:54930212-54930231 | MS.gene81160:intron | 35.0% |
| !! | CATAAATACAAAGGTGTCTG+CGG | + | chr6.1:54930918-54930937 | None:intergenic | 35.0% |
| !! | GTTTTTAGATCGTGGTAAAG+AGG | - | chr6.1:54930699-54930718 | MS.gene81160:intron | 35.0% |
| !!! | ATATGCAAGGTTGGTGATTT+TGG | - | chr6.1:54931831-54931850 | MS.gene81160:intron | 35.0% |
| AACTCATGATTTCGAACCTC+TGG | - | chr6.1:54931581-54931600 | MS.gene81160:intron | 40.0% | |
| AGATTCCGTACATGTTGGAA+CGG | - | chr6.1:54930242-54930261 | MS.gene81160:intron | 40.0% | |
| ATCCATTAGAATGGTCTGCA+TGG | - | chr6.1:54931454-54931473 | MS.gene81160:intron | 40.0% | |
| ATGTAGATGCCATTATCGCA+TGG | - | chr6.1:54930773-54930792 | MS.gene81160:intron | 40.0% | |
| GAGAGATATCGATCAAAGGA+TGG | - | chr6.1:54930555-54930574 | MS.gene81160:intron | 40.0% | |
| GGATGAGAGATATCGATCAA+AGG | - | chr6.1:54930551-54930570 | MS.gene81160:intron | 40.0% | |
| GGGAGCTAAGATTTACATAC+AGG | + | chr6.1:54930651-54930670 | None:intergenic | 40.0% | |
| GGTGTGGATACTAGAGTAAT+TGG | - | chr6.1:54931885-54931904 | MS.gene81160:intron | 40.0% | |
| GTTTCACCGAGACGTTAATT+GGG | - | chr6.1:54931071-54931090 | MS.gene81160:intron | 40.0% | |
| TAAGACCTCAAAAGACACAC+TGG | + | chr6.1:54930822-54930841 | None:intergenic | 40.0% | |
| TATTGTTTGGCCTCATGTCA+CGG | + | chr6.1:54931554-54931573 | None:intergenic | 40.0% | |
| TCATACAGCACTCACAAGTT+TGG | + | chr6.1:54931954-54931973 | None:intergenic | 40.0% | |
| TGCAATCACCAAATGTATCG+TGG | + | chr6.1:54931352-54931371 | None:intergenic | 40.0% | |
| TGTGCTGAAATATGCAAGGT+TGG | - | chr6.1:54931822-54931841 | MS.gene81160:intron | 40.0% | |
| TTATCGAGGATTATCATCGG+AGG | - | chr6.1:54930156-54930175 | MS.gene81160:intron | 40.0% | |
| TTCCATGCAGACCATTCTAA+TGG | + | chr6.1:54931459-54931478 | None:intergenic | 40.0% | |
| TTTCACCGAGACGTTAATTG+GGG | - | chr6.1:54931072-54931091 | MS.gene81160:intron | 40.0% | |
| ! | CTTTTGTCCACAACAAAGGT+GGG | - | chr6.1:54930216-54930235 | MS.gene81160:intron | 40.0% |
| ! | TATAGCCAGTGTGTCTTTTG+AGG | - | chr6.1:54930814-54930833 | MS.gene81160:intron | 40.0% |
| ! | TGAATCTGAAGTGTGTTTCG+AGG | - | chr6.1:54931760-54931779 | MS.gene81160:intron | 40.0% |
| ! | TTTTGTCCACAACAAAGGTG+GGG | - | chr6.1:54930217-54930236 | MS.gene81160:intron | 40.0% |
| !! | TTGCTCTTCAAGTTTTGCCT+CGG | + | chr6.1:54930188-54930207 | None:intergenic | 40.0% |
| AAACGCCCCAATTAACGTCT+CGG | + | chr6.1:54931080-54931099 | None:intergenic | 45.0% | |
| ACAGGTTTAACAGAGGGGAT+GGG | + | chr6.1:54930633-54930652 | None:intergenic | 45.0% | |
| ACATATTTCAGGGCGGCAAA+GGG | - | chr6.1:54931431-54931450 | MS.gene81160:intron | 45.0% | |
| CTTTCTACTCCTTATGCAGC+AGG | - | chr6.1:54930748-54930767 | MS.gene81160:intron | 45.0% | |
| GCTAACCGTTCCAACATGTA+CGG | + | chr6.1:54930250-54930269 | None:intergenic | 45.0% | |
| GGATGGTACGTTTGTATGAC+TGG | - | chr6.1:54930572-54930591 | MS.gene81160:intron | 45.0% | |
| GGCAAAGGGATCCATTAGAA+TGG | - | chr6.1:54931445-54931464 | MS.gene81160:intron | 45.0% | |
| GGTTTCACCGAGACGTTAAT+TGG | - | chr6.1:54931070-54931089 | MS.gene81160:intron | 45.0% | |
| TACAGGTTTAACAGAGGGGA+TGG | + | chr6.1:54930634-54930653 | None:intergenic | 45.0% | |
| TCGTGGTAAAGAGGAGTTCA+AGG | - | chr6.1:54930708-54930727 | MS.gene81160:intron | 45.0% | |
| TTCAAGTGTCTGCGCATTCT+TGG | + | chr6.1:54931985-54932004 | None:intergenic | 45.0% | |
| ! | ATTGTTGTTGAAGCTGCTCG+TGG | - | chr6.1:54931483-54931502 | MS.gene81160:intron | 45.0% |
| ! | CTTCATGAAGAGTGCAGAGT+AGG | - | chr6.1:54931516-54931535 | MS.gene81160:intron | 45.0% |
| ! | GATTCACGCCCTTCATCTTT+TGG | + | chr6.1:54931746-54931765 | None:intergenic | 45.0% |
| ! | GCTTTTGTCCACAACAAAGG+TGG | - | chr6.1:54930215-54930234 | MS.gene81160:intron | 45.0% |
| ! | TTGTTGTTGAAGCTGCTCGT+GGG | - | chr6.1:54931484-54931503 | MS.gene81160:intron | 45.0% |
| !! | TCTTCAAGTTTTGCCTCGGA+CGG | + | chr6.1:54930184-54930203 | None:intergenic | 45.0% |
| !!! | CAAGGTTGGTGATTTTGGAC+TGG | - | chr6.1:54931836-54931855 | MS.gene81160:intron | 45.0% |
| !! | ATATATAAATAATAAAAGAT+TGG | - | chr6.1:54930946-54930965 | MS.gene81160:CDS | 5.0% |
| !!! | GAAATATATATTTTTAAATT+TGG | - | chr6.1:54931188-54931207 | MS.gene81160:intron | 5.0% |
| AGGCAGAACTAACGTACCAG+AGG | + | chr6.1:54931600-54931619 | None:intergenic | 50.0% | |
| ATCTTGCCCCACCTTTGTTG+TGG | + | chr6.1:54930226-54930245 | None:intergenic | 50.0% | |
| CCATACTCGCCATGCGATAA+TGG | + | chr6.1:54930785-54930804 | None:intergenic | 50.0% | |
| CCATTATCGCATGGCGAGTA+TGG | - | chr6.1:54930782-54930801 | MS.gene81160:intron | 50.0% | |
| CGGATCAATCAGATACCACG+TGG | + | chr6.1:54930898-54930917 | None:intergenic | 50.0% | |
| GACATATTTCAGGGCGGCAA+AGG | - | chr6.1:54931430-54931449 | MS.gene81160:intron | 50.0% | |
| GGGCAAGATTCCGTACATGT+TGG | - | chr6.1:54930237-54930256 | MS.gene81160:intron | 50.0% | |
| GTATCCTTGACAGCGTCTGA+AGG | - | chr6.1:54930333-54930352 | MS.gene81160:intron | 50.0% | |
| TCTACATCGCCTGCTGCATA+AGG | + | chr6.1:54930760-54930779 | None:intergenic | 50.0% | |
| TTGGTTTCACGAGTACCACG+TGG | - | chr6.1:54930880-54930899 | MS.gene81160:CDS | 50.0% | |
| !!! | TTGGTGATTTTGGACTGGCG+AGG | - | chr6.1:54931841-54931860 | MS.gene81160:intron | 50.0% |
| GTATCGTCCACCGTGACATG+AGG | - | chr6.1:54931541-54931560 | MS.gene81160:intron | 55.0% | |
| TAGGGTGACCTAAGCCCTAC+AGG | - | chr6.1:54930294-54930313 | MS.gene81160:intron | 55.0% | |
| TCCACACCCATGTCTCCATC+AGG | + | chr6.1:54931873-54931892 | None:intergenic | 55.0% | |
| TGGCAGCCTGATGGAGACAT+GGG | - | chr6.1:54931864-54931883 | MS.gene81160:intron | 55.0% | |
| TGTTTGGCCTCATGTCACGG+TGG | + | chr6.1:54931551-54931570 | None:intergenic | 55.0% | |
| TTGAAGCTGCTCGTGGGTCA+AGG | - | chr6.1:54931490-54931509 | MS.gene81160:intron | 55.0% | |
| !!! | GTGATTTTGGACTGGCGAGG+TGG | - | chr6.1:54931844-54931863 | MS.gene81160:intron | 55.0% |
| CAGGCCTTCAGACGCTGTCA+AGG | + | chr6.1:54930340-54930359 | None:intergenic | 60.0% | |
| GCCTGATGGAGACATGGGTG+TGG | - | chr6.1:54931869-54931888 | MS.gene81160:intron | 60.0% | |
| GTGGCAGCCTGATGGAGACA+TGG | - | chr6.1:54931863-54931882 | MS.gene81160:intron | 60.0% | |
| !! | ATCATCGGAGGTGCCGTCCG+AGG | - | chr6.1:54930168-54930187 | MS.gene81160:intron | 65.0% |
| CTGGCGAGGTGGCAGCCTGA+TGG | - | chr6.1:54931855-54931874 | MS.gene81160:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 54930113 | 54932346 | 54930113 | ID=MS.gene81160 |
| chr6.1 | mRNA | 54930113 | 54932346 | 54930113 | ID=MS.gene81160.t1;Parent=MS.gene81160 |
| chr6.1 | exon | 54932226 | 54932346 | 54932226 | ID=MS.gene81160.t1.exon1;Parent=MS.gene81160.t1 |
| chr6.1 | CDS | 54932226 | 54932346 | 54932226 | ID=cds.MS.gene81160.t1;Parent=MS.gene81160.t1 |
| chr6.1 | exon | 54931651 | 54931752 | 54931651 | ID=MS.gene81160.t1.exon2;Parent=MS.gene81160.t1 |
| chr6.1 | CDS | 54931651 | 54931752 | 54931651 | ID=cds.MS.gene81160.t1;Parent=MS.gene81160.t1 |
| chr6.1 | exon | 54930853 | 54931017 | 54930853 | ID=MS.gene81160.t1.exon3;Parent=MS.gene81160.t1 |
| chr6.1 | CDS | 54930853 | 54931017 | 54930853 | ID=cds.MS.gene81160.t1;Parent=MS.gene81160.t1 |
| chr6.1 | exon | 54930113 | 54930117 | 54930113 | ID=MS.gene81160.t1.exon4;Parent=MS.gene81160.t1 |
| chr6.1 | CDS | 54930113 | 54930117 | 54930113 | ID=cds.MS.gene81160.t1;Parent=MS.gene81160.t1 |
| Gene Sequence |
| Protein sequence |
