AlfalfaGEDB | MS.gene81267

M. sativa cultivar XinJiangDaYe / MS.gene81267

KEGG: K10523
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81267.t1	RHN58073.1	95.2	165	8	0	1	165	19	183	1.00E-81	312.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81267.t1	Q680K8	55.2	165	72	1	1	165	157	319	1.5e-41	170.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81267.t1	G7K4U5	95.2	165	8	0	1	165	154	318	7.5e-82	312.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene81267.t1	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81267.t1	MTR_5g096790	95.152	165	8	0	1	165	154	318	4.83e-112	322
MS.gene81267.t1	MTR_3g061090	57.059	170	71	1	1	170	86	253	6.72e-58	182
MS.gene81267.t1	MTR_3g061090	57.059	170	71	1	1	170	158	325	1.13e-56	181
MS.gene81267.t1	MTR_5g096700	53.333	165	76	1	1	165	99	262	9.36e-56	177
MS.gene81267.t1	MTR_5g096700	53.333	165	76	1	1	165	158	321	1.21e-54	176
MS.gene81267.t1	MTR_3g088560	42.775	173	96	2	1	172	32	202	3.69e-40	135
MS.gene81267.t1	MTR_1g029850	41.212	165	95	1	1	165	158	320	5.23e-40	138
MS.gene81267.t1	MTR_3g088560	42.775	173	96	2	1	172	84	254	1.86e-39	135
MS.gene81267.t1	MTR_3g088560	42.775	173	96	2	1	172	99	269	3.89e-39	134
MS.gene81267.t1	MTR_3g088560	42.775	173	96	2	1	172	154	324	2.11e-38	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81267.t1	AT1G55760	55.152	165	72	1	1	165	157	319	2.85e-53	172
MS.gene81267.t1	AT1G21780	44.848	165	89	1	1	165	154	316	2.64e-41	141
MS.gene81267.t1	AT1G21780	44.848	165	89	1	1	165	154	316	2.64e-41	141

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Find 18 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCGCAACTAATCTTCAAGT+AGG	0.555426	5.2:+81174059	None:intergenic
ATATCTGAGATGTTAATAAC+AGG	0.455807	5.2:+81174291	None:intergenic
ATATTCAAACATAGGTGACC+GGG	0.654376	5.2:+81174347	None:intergenic
ATCTAGCTGTTCTTGCTGCC+CGG	0.416939	5.2:-81174365	MS.gene81267:CDS
ATGAATGCTTGACAAACTTC+AGG	0.409567	5.2:+81174264	None:intergenic
ATTGATAGAAATATGCAGCA+TGG	0.618155	5.2:+81174085	None:intergenic
CGGCGTTAATGATTTGAGAG+AGG	0.605267	5.2:-81174163	MS.gene81267:CDS
GAATCATAGTTTCGAGCTAT+TGG	0.408610	5.2:-81174202	MS.gene81267:CDS
GCAAACATATATTCAAACAT+AGG	0.563128	5.2:+81174339	None:intergenic
GCGCAACTAATCTTCAAGTA+GGG	0.602481	5.2:+81174060	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATAGAAATATGCAGCA+TGG	+	chr5.2:81174280-81174299	None:intergenic	30.0%
TATATTCAAACATAGGTGAC+CGG	+	chr5.2:81174019-81174038	None:intergenic	30.0%
TATGTTTGCACAAGATTCTA+AGG	-	chr5.2:81174037-81174056	MS.gene81267:CDS	30.0%
ATATTCAAACATAGGTGACC+GGG	+	chr5.2:81174018-81174037	None:intergenic	35.0%
ATGAATGCTTGACAAACTTC+AGG	+	chr5.2:81174101-81174120	None:intergenic	35.0%
GAATCATAGTTTCGAGCTAT+TGG	-	chr5.2:81174160-81174179	MS.gene81267:CDS	35.0%
GCTCAATATCTAGTGGAATT+TGG	-	chr5.2:81174323-81174342	MS.gene81267:CDS	35.0%
AGCGCAACTAATCTTCAAGT+AGG	+	chr5.2:81174306-81174325	None:intergenic	40.0%
GCGCAACTAATCTTCAAGTA+GGG	+	chr5.2:81174305-81174324	None:intergenic	40.0%
TAGTTGCGCTCAATATCTAG+TGG	-	chr5.2:81174316-81174335	MS.gene81267:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	81173927	81174457	81173927	ID=MS.gene81267
chr5.2	mRNA	81173927	81174457	81173927	ID=MS.gene81267.t1;Parent=MS.gene81267
chr5.2	exon	81173927	81174457	81173927	ID=MS.gene81267.t1.exon1;Parent=MS.gene81267.t1
chr5.2	CDS	81173927	81174457	81173927	ID=cds.MS.gene81267.t1;Parent=MS.gene81267.t1

Gene Sequence

>MS.gene81267

ATGTTAAGAGAAAGTATCCACACAGACGCTACAATCAAGCTCGTATCATCAGATAAAATCATAAGAGTTCATCTAGCTGTTCTTGCTGCCCGGTCACCTATGTTTGAATATATGTTTGCACAAGATTCTAAGGAGAATAACATGCCTGTTATTAACATCTCAGATATGTCACCTGAAGTTTGTCAAGCATTCATAGATTATCTATATGACAACATCGACGATGAAGAACTTGCGAATCATAGTTTCGAGCTATTGGTTGCTGCTGAGAAATACGGCGTTAATGATTTGAGAGAGGAGTGTGAAAAGAGTCTTCAAGAAGATATCAACAGAAAAAATATACTTGAGAGGCTCCATGCTGCATATTTCTATCAATTGCCCTACTTGAAGATTAGTTGCGCTCAATATCTAGTGGAATTTGGTAAAATACATGAAATCTGGGATGATTTTCTTGCCTTCCTAAAATTGGCAGATGATGATGTAATTTGCGAAATTTTCTTAGTTAAACTAGGTTTGAGTACCTTTCAGTTTTGA

Protein sequence

>MS.gene81267.t1

MLRESIHTDATIKLVSSDKIIRVHLAVLAARSPMFEYMFAQDSKENNMPVINISDMSPEVCQAFIDYLYDNIDDEELANHSFELLVAAEKYGVNDLREECEKSLQEDINRKNILERLHAAYFYQLPYLKISCAQYLVEFGKIHEIWDDFLAFLKLADDDVICEIFLVKLGLSTFQF