AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81314

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81314.t1 MTR_5g095900 88.172 186 17 3 15 200 3 183 2.13e-93 270
MS.gene81314.t1 MTR_5g095860 74.194 186 30 4 15 200 3 170 5.93e-69 208
MS.gene81314.t1 MTR_5g095920 82.114 123 12 4 78 200 16 128 6.15e-41 135
MS.gene81314.t1 MTR_4g133952 45.455 110 56 1 14 119 44 153 4.69e-25 98.2
MS.gene81314.t1 MTR_4g133938 45.614 114 53 3 11 118 3 113 1.12e-24 94.4
MS.gene81314.t1 MTR_4g119500 47.312 93 49 0 25 117 19 111 1.77e-24 93.6
MS.gene81314.t1 MTR_1g039040 43.220 118 57 2 21 131 2 116 6.21e-24 94.0
MS.gene81314.t1 MTR_0392s0020 43.363 113 54 2 7 117 3 107 1.32e-23 91.7
MS.gene81314.t1 MTR_3g058980 45.217 115 57 3 3 117 8 116 3.63e-23 92.0
MS.gene81314.t1 MTR_5g095740 47.778 90 47 0 28 117 23 112 1.29e-22 90.5
MS.gene81314.t1 MTR_1g083070 45.545 101 53 1 25 123 1 101 1.98e-22 88.2
MS.gene81314.t1 MTR_1g072790 40.351 114 66 1 6 117 5 118 3.76e-22 89.0
MS.gene81314.t1 MTR_2g026710 42.991 107 58 1 11 117 3 106 4.20e-22 88.6
MS.gene81314.t1 MTR_7g100650 39.286 112 67 1 6 117 5 115 7.48e-22 87.8
MS.gene81314.t1 MTR_7g061270 39.286 112 67 1 6 117 5 115 1.59e-21 87.0
MS.gene81314.t1 MTR_8g091720 43.750 96 51 1 22 117 25 117 1.15e-20 85.5
MS.gene81314.t1 MTR_1g088860 43.434 99 56 0 19 117 27 125 5.00e-20 84.0
MS.gene81314.t1 MTR_8g093920 41.758 91 53 0 27 117 39 129 8.25e-19 80.9
MS.gene81314.t1 MTR_1g029100 36.986 73 46 0 33 105 7 79 9.85e-12 59.3
MS.gene81314.t1 MTR_1g029070 31.395 86 59 0 32 117 56 141 1.25e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81314.t1 AT5G47670 45.714 105 54 1 13 117 17 118 2.85e-25 97.8
MS.gene81314.t1 AT1G21970 44.737 114 59 1 18 127 49 162 3.58e-25 98.6
MS.gene81314.t1 AT5G47670 45.714 105 54 1 13 117 46 147 4.07e-25 98.2
MS.gene81314.t1 AT5G47670 45.714 105 54 1 13 117 46 147 4.07e-25 98.2
MS.gene81314.t1 AT4G14540 46.602 103 51 2 15 117 12 110 8.29e-23 90.1
MS.gene81314.t1 AT5G47640 50.000 90 45 0 28 117 27 116 1.10e-22 90.9
MS.gene81314.t1 AT2G47810 43.878 98 55 0 19 116 42 139 2.69e-21 86.3
MS.gene81314.t1 AT2G38880 39.669 121 66 2 7 123 3 120 3.46e-21 85.5
MS.gene81314.t1 AT2G38880 39.669 121 66 2 7 123 3 120 3.46e-21 85.5
MS.gene81314.t1 AT2G38880 39.669 121 66 2 7 123 3 120 3.46e-21 85.5
MS.gene81314.t1 AT2G37060 39.496 119 70 1 1 117 1 119 3.91e-21 86.3
MS.gene81314.t1 AT2G37060 39.496 119 70 1 1 117 1 119 3.91e-21 86.3
MS.gene81314.t1 AT2G37060 39.496 119 70 1 1 117 1 119 3.91e-21 86.3
MS.gene81314.t1 AT2G38880 39.669 121 66 2 7 123 3 120 4.31e-21 85.1
MS.gene81314.t1 AT2G38880 39.640 111 64 1 7 117 3 110 6.10e-21 84.7
MS.gene81314.t1 AT1G09030 44.444 90 50 0 31 120 6 95 6.78e-21 84.7
MS.gene81314.t1 AT2G38880 40.708 113 60 2 7 115 3 112 1.96e-20 84.0
MS.gene81314.t1 AT2G38880 40.708 113 60 2 7 115 3 112 1.96e-20 84.0
MS.gene81314.t1 AT2G38880 39.640 111 64 1 7 117 3 110 5.92e-20 81.3
MS.gene81314.t1 AT3G53340 42.222 90 52 0 28 117 29 118 1.03e-19 82.4
MS.gene81314.t1 AT3G53340 42.222 90 52 0 28 117 29 118 1.03e-19 82.4
MS.gene81314.t1 AT3G53340 44.318 88 45 1 28 111 29 116 1.08e-18 78.6
MS.gene81314.t1 AT2G38880 39.640 111 64 1 7 117 3 110 1.69e-18 79.0
MS.gene81314.t1 AT2G38880 39.640 111 64 1 7 117 3 110 1.69e-18 79.0
MS.gene81314.t1 AT2G38880 39.640 111 64 1 7 117 3 110 1.69e-18 79.0
MS.gene81314.t1 AT2G13570 38.182 110 65 1 8 117 19 125 2.25e-18 80.1
MS.gene81314.t1 AT3G53340 44.706 85 43 1 31 111 32 116 7.62e-18 77.0
MS.gene81314.t1 AT3G53340 44.706 85 43 1 31 111 32 116 7.62e-18 77.0

Find 54 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTACAATGCACAAAT+TGG 0.166228 5.2:+80598951 MS.gene81314:CDS
GGGTCGGCAAACACGAAATT+TGG 0.209781 5.2:-80599123 None:intergenic
ATTATTGCAAGTTAGATTAT+AGG 0.238725 5.2:+80598905 MS.gene81314:CDS
GGTGGAGGTGGAGGTGGAGG+TGG 0.244787 5.2:-80599054 None:intergenic
GGAGGTGGAGGTGGAGGTGG+GGG 0.276683 5.2:-80599051 None:intergenic
TCGGTTATCTTTGCATGTTT+TGG 0.290287 5.2:-80598814 None:intergenic
TATAATCTAACTTGCAATAA+TGG 0.324070 5.2:-80598903 None:intergenic
CGATGAAAGCAAGGAAATTA+TGG 0.324481 5.2:+80598834 MS.gene81314:CDS
GTGGAGGTGGAGGTGGAGGT+GGG 0.327374 5.2:-80599053 None:intergenic
TGGAGGTGGAGGTGGAGGTG+GGG 0.332226 5.2:-80599052 None:intergenic
TCCTGTGGCAGCGGCGGTGG+TGG 0.345867 5.2:-80599072 None:intergenic
TGATGGAAGCTTTGATGTTA+TGG 0.360298 5.2:+80599233 MS.gene81314:CDS
AGCGGCGGTGGTGGAGGTGG+AGG 0.366916 5.2:-80599063 None:intergenic
TGTGGCAGCGGCGGTGGTGG+AGG 0.383001 5.2:-80599069 None:intergenic
GGCGGTGGTGGAGGTGGAGG+TGG 0.387585 5.2:-80599060 None:intergenic
GGTGGTGGAGGTGGAGGTGG+AGG 0.387641 5.2:-80599057 None:intergenic
GGCAGCGGCGGTGGTGGAGG+TGG 0.396026 5.2:-80599066 None:intergenic
AAGACGGATATCATGGCTTC+TGG 0.397227 5.2:+80597104 None:intergenic
GTTTGCCGACCCAACAGAAA+TGG 0.398478 5.2:+80599134 MS.gene81314:CDS
AGAGAACTTGGTGGTGGTGG+TGG 0.403731 5.2:+80599192 MS.gene81314:CDS
CTTGACTCTCCAGGATGATC+TGG 0.410769 5.2:-80597131 None:intergenic
TTAATTACAATGCACAAATT+GGG 0.436910 5.2:+80598952 MS.gene81314:CDS
CATAATTTCCTTGCTTTCAT+CGG 0.441388 5.2:-80598833 None:intergenic
AAATCCTGTGGCAGCGGCGG+TGG 0.452920 5.2:-80599075 None:intergenic
ACACGAAATTTGGATCCAAC+GGG 0.476879 5.2:-80599113 None:intergenic
AAAATTGCACCCATTTCTGT+TGG 0.484335 5.2:-80599144 None:intergenic
AAATTGCACCCATTTCTGTT+GGG 0.484803 5.2:-80599143 None:intergenic
TGCACCCATTTCTGTTGGGT+CGG 0.488038 5.2:-80599139 None:intergenic
TCCACCACCGCCGCTGCCAC+AGG 0.490461 5.2:+80599071 MS.gene81314:CDS
AACCTATGCACATTGGCAAT+GGG 0.490722 5.2:-80598775 None:intergenic
TTTGCCGACCCAACAGAAAT+GGG 0.492390 5.2:+80599135 MS.gene81314:CDS
ATCTAACTTGCAATAATGGT+TGG 0.494716 5.2:-80598899 None:intergenic
CAACCTATGCACATTGGCAA+TGG 0.501218 5.2:-80598776 None:intergenic
AACACGAAATTTGGATCCAA+CGG 0.514761 5.2:-80599114 None:intergenic
TTTCGTGATCGTGCTCGTGT+AGG 0.519395 5.2:+80599018 MS.gene81314:CDS
GATAGAGAACTTGGTGGTGG+TGG 0.519708 5.2:+80599189 MS.gene81314:CDS
TCTGGTGGTCCAGATCATCC+TGG 0.535846 5.2:+80597122 MS.gene81314:CDS
TTCCCATTGCCAATGTGCAT+AGG 0.538760 5.2:+80598773 MS.gene81314:CDS
GATGATGATGATAGAGAACT+TGG 0.547404 5.2:+80599180 MS.gene81314:CDS
TTACTTGAACTTGACTCTCC+AGG 0.547483 5.2:-80597140 None:intergenic
GAGTGCAAGCAGCTAGTTCG+AGG 0.550758 5.2:+80598725 MS.gene81314:CDS
CATTAGCTTTGTTACTGCTG+AGG 0.551315 5.2:+80598876 MS.gene81314:CDS
ATGCACATTGGCAATGGGAA+AGG 0.555667 5.2:-80598770 None:intergenic
TCAAGCTCATAATTTCCCGT+TGG 0.560346 5.2:+80599098 MS.gene81314:CDS
TGAAAATCCTGTGGCAGCGG+CGG 0.568284 5.2:-80599078 None:intergenic
TTTCATCAACCTATGCACAT+TGG 0.585530 5.2:-80598782 None:intergenic
GCTTGAAAATCCTGTGGCAG+CGG 0.592551 5.2:-80599081 None:intergenic
AAAGATAACCGATGAAAGCA+AGG 0.604899 5.2:+80598825 MS.gene81314:CDS
GATGATGATAGAGAACTTGG+TGG 0.615654 5.2:+80599183 MS.gene81314:CDS
GGTGATGGCAACTCAAGTGA+TGG 0.623580 5.2:+80599216 MS.gene81314:CDS
ACGGATATCATGGCTTCTGG+TGG 0.644987 5.2:+80597107 None:intergenic
GATGATAGAGAACTTGGTGG+TGG 0.661700 5.2:+80599186 MS.gene81314:CDS
TTATGAGCTTGAAAATCCTG+TGG 0.676989 5.2:-80599087 None:intergenic
AGTGCAAGCAGCTAGTTCGA+GGG 0.693334 5.2:+80598726 MS.gene81314:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAAAAAAATTTATTTTCT+TGG - chr5.2:80597961-80597980 None:intergenic 10.0%
!!! TACATTTTGAATTTAAAAAT+TGG + chr5.2:80597544-80597563 MS.gene81314:intron 10.0%
!! AAAAAGATAGTATAATTTCT+GGG - chr5.2:80598062-80598081 None:intergenic 15.0%
!! TAAAAAGATAGTATAATTTC+TGG - chr5.2:80598063-80598082 None:intergenic 15.0%
!!! ATGTGTTTTAATTTTATTCT+AGG + chr5.2:80597650-80597669 MS.gene81314:intron 15.0%
!!! CAGAAATAAATGTTTTTAAA+AGG - chr5.2:80598502-80598521 None:intergenic 15.0%
!! AAGATCCATATATACATATT+TGG - chr5.2:80597758-80597777 None:intergenic 20.0%
!! AAGGTATATATACCAAAAAA+AGG - chr5.2:80598483-80598502 None:intergenic 20.0%
!! AATTCAAAATGTAAATCATC+TGG - chr5.2:80597537-80597556 None:intergenic 20.0%
!! AGATCCATATATACATATTT+GGG - chr5.2:80597757-80597776 None:intergenic 20.0%
!! ATTATATATAACGACTATTG+TGG + chr5.2:80598687-80598706 MS.gene81314:intron 20.0%
!! ATTATTAACGAAATTTGAAG+AGG - chr5.2:80597470-80597489 None:intergenic 20.0%
!! ATTATTGCAAGTTAGATTAT+AGG + chr5.2:80598905-80598924 MS.gene81314:CDS 20.0%
!! CAATAGTCGTTATATATAAT+TGG - chr5.2:80598687-80598706 None:intergenic 20.0%
!! GATTATATTGATACTTGTAA+TGG + chr5.2:80597322-80597341 MS.gene81314:intron 20.0%
!! TATAATGGTTTACATTAGAA+AGG - chr5.2:80598197-80598216 None:intergenic 20.0%
!! TTAATTACAATGCACAAATT+GGG + chr5.2:80598952-80598971 MS.gene81314:CDS 20.0%
!! TTATTAACGAAATTTGAAGA+GGG - chr5.2:80597469-80597488 None:intergenic 20.0%
!!! TATAATCTAACTTGCAATAA+TGG - chr5.2:80598906-80598925 None:intergenic 20.0%
! AACACATCTATGTTGTATAA+TGG - chr5.2:80598212-80598231 None:intergenic 25.0%
! AATTAAAACACATACATGCT+TGG - chr5.2:80597643-80597662 None:intergenic 25.0%
! ACAAGAAAAAACAGTTCAAA+AGG - chr5.2:80598102-80598121 None:intergenic 25.0%
! ATCCATATATACATATTTGG+GGG - chr5.2:80597755-80597774 None:intergenic 25.0%
! ATTAAAACACATACATGCTT+GGG - chr5.2:80597642-80597661 None:intergenic 25.0%
! GATCCATATATACATATTTG+GGG - chr5.2:80597756-80597775 None:intergenic 25.0%
! GCTTTACAAGTTTAAATCTT+TGG - chr5.2:80597177-80597196 None:intergenic 25.0%
! GTTAATTACAATGCACAAAT+TGG + chr5.2:80598951-80598970 MS.gene81314:CDS 25.0%
!! ATACTATCTTTTTACCAAGA+TGG + chr5.2:80598069-80598088 MS.gene81314:intron 25.0%
!! CAAAAAAAGGTATATATGCA+TGG - chr5.2:80598470-80598489 None:intergenic 25.0%
!! TAATTTTCTCTCACTATCAT+TGG + chr5.2:80598532-80598551 MS.gene81314:intron 25.0%
!!! CATGCATATATACCTTTTTT+TGG + chr5.2:80598468-80598487 MS.gene81314:intron 25.0%
AAAATTTCAAGATTCTCTCC+CGG - chr5.2:80597879-80597898 None:intergenic 30.0%
AGTCAGGATATAAAAGTCAT+TGG + chr5.2:80597504-80597523 MS.gene81314:intron 30.0%
ATCACAAAGTAAATCTAGTC+AGG + chr5.2:80597488-80597507 MS.gene81314:intron 30.0%
ATCCCCCAAATATGTATATA+TGG + chr5.2:80597750-80597769 MS.gene81314:intron 30.0%
CATAATTTCCTTGCTTTCAT+CGG - chr5.2:80598836-80598855 None:intergenic 30.0%
GATTGAAATTGAATCGTGAT+CGG - chr5.2:80598238-80598257 None:intergenic 30.0%
TAGGAACAATAGTCATTGTT+GGG + chr5.2:80597669-80597688 MS.gene81314:intron 30.0%
TGTTGTAAAAGATAGAGATG+TGG + chr5.2:80597815-80597834 MS.gene81314:intron 30.0%
! ATCTAACTTGCAATAATGGT+TGG - chr5.2:80598902-80598921 None:intergenic 30.0%
! TACTCTTTGTTTGTTTGTCT+CGG + chr5.2:80597930-80597949 MS.gene81314:intron 30.0%
!!! AGTTTTAGACTTTGCATAGT+TGG + chr5.2:80598429-80598448 MS.gene81314:intron 30.0%
AAAAATGACCTCGCATACAT+TGG - chr5.2:80598372-80598391 None:intergenic 35.0%
AAAATGACCTCGCATACATT+GGG - chr5.2:80598371-80598390 None:intergenic 35.0%
AAAATTGCACCCATTTCTGT+TGG - chr5.2:80599147-80599166 None:intergenic 35.0%
AAAGATAACCGATGAAAGCA+AGG + chr5.2:80598825-80598844 MS.gene81314:CDS 35.0%
AAATTGCACCCATTTCTGTT+GGG - chr5.2:80599146-80599165 None:intergenic 35.0%
AACACGAAATTTGGATCCAA+CGG - chr5.2:80599117-80599136 None:intergenic 35.0%
AACGAAATTTGAAGAGGGTA+AGG - chr5.2:80597464-80597483 None:intergenic 35.0%
ACGAAATTTGAAGAGGGTAA+GGG - chr5.2:80597463-80597482 None:intergenic 35.0%
ACGTACAACAATCGCAATTA+TGG - chr5.2:80598325-80598344 None:intergenic 35.0%
AGAATTAAGACCATAGTCGT+CGG - chr5.2:80597615-80597634 None:intergenic 35.0%
AGCTAGCAAGCATTTATGTT+TGG + chr5.2:80598627-80598646 MS.gene81314:intron 35.0%
AGGCATATCAAGACAAAGTA+AGG + chr5.2:80597840-80597859 MS.gene81314:intron 35.0%
CGATGAAAGCAAGGAAATTA+TGG + chr5.2:80598834-80598853 MS.gene81314:CDS 35.0%
CTAGGAACAATAGTCATTGT+TGG + chr5.2:80597668-80597687 MS.gene81314:intron 35.0%
TAAAAGATAGAGATGTGGAG+AGG + chr5.2:80597820-80597839 MS.gene81314:intron 35.0%
TTATGAGCTTGAAAATCCTG+TGG - chr5.2:80599090-80599109 None:intergenic 35.0%
TTGGGAAAAGAAAATGTGCA+TGG - chr5.2:80598353-80598372 None:intergenic 35.0%
TTGTGGACAAAAAGAACTTG+AGG - chr5.2:80598398-80598417 None:intergenic 35.0%
TTTCATCAACCTATGCACAT+TGG - chr5.2:80598785-80598804 None:intergenic 35.0%
! ACAGAAATGGGTGCAATTTT+AGG + chr5.2:80599147-80599166 MS.gene81314:CDS 35.0%
! CAAAAGGTACAATTCCATCT+TGG - chr5.2:80598086-80598105 None:intergenic 35.0%
! GATGATGATGATAGAGAACT+TGG + chr5.2:80599180-80599199 MS.gene81314:CDS 35.0%
! GGGAGAGAATCTTGAAATTT+TGG + chr5.2:80597878-80597897 MS.gene81314:intron 35.0%
! TCGGTTATCTTTGCATGTTT+TGG - chr5.2:80598817-80598836 None:intergenic 35.0%
! TGATGGAAGCTTTGATGTTA+TGG + chr5.2:80599233-80599252 MS.gene81314:CDS 35.0%
AACCTATGCACATTGGCAAT+GGG - chr5.2:80598778-80598797 None:intergenic 40.0%
ACACGAAATTTGGATCCAAC+GGG - chr5.2:80599116-80599135 None:intergenic 40.0%
CACGAAAAAGTTGGATGTAG+CGG - chr5.2:80599005-80599024 None:intergenic 40.0%
GATGATGATAGAGAACTTGG+TGG + chr5.2:80599183-80599202 MS.gene81314:CDS 40.0%
TCAAGCTCATAATTTCCCGT+TGG + chr5.2:80599098-80599117 MS.gene81314:CDS 40.0%
TTACTTGAACTTGACTCTCC+AGG - chr5.2:80597143-80597162 None:intergenic 40.0%
! AAAAAGTTGGATGTAGCGGA+AGG - chr5.2:80599001-80599020 None:intergenic 40.0%
! AAAACTCACACACTAGCTTG+TGG - chr5.2:80598415-80598434 None:intergenic 40.0%
! ATTGTGGTGATGTTAGAGGA+TGG + chr5.2:80598703-80598722 MS.gene81314:intron 40.0%
! GACTATTGTGGTGATGTTAG+AGG + chr5.2:80598699-80598718 MS.gene81314:intron 40.0%
! TTCTTTTCCCAATGTATGCG+AGG + chr5.2:80598361-80598380 MS.gene81314:intron 40.0%
!! CATTAGCTTTGTTACTGCTG+AGG + chr5.2:80598876-80598895 MS.gene81314:CDS 40.0%
ATGCACATTGGCAATGGGAA+AGG - chr5.2:80598773-80598792 None:intergenic 45.0%
CAACCTATGCACATTGGCAA+TGG - chr5.2:80598779-80598798 None:intergenic 45.0%
CTATCTTCATCCGACGACTA+TGG + chr5.2:80597602-80597621 MS.gene81314:intron 45.0%
GAGCACGATCACGAAAAAGT+TGG - chr5.2:80599014-80599033 None:intergenic 45.0%
TCAAGATTCTCTCCCGGATT+TGG - chr5.2:80597873-80597892 None:intergenic 45.0%
TTCCCATTGCCAATGTGCAT+AGG + chr5.2:80598773-80598792 MS.gene81314:CDS 45.0%
TTTGCCGACCCAACAGAAAT+GGG + chr5.2:80599135-80599154 MS.gene81314:CDS 45.0%
! GATGATAGAGAACTTGGTGG+TGG + chr5.2:80599186-80599205 MS.gene81314:CDS 45.0%
!! GGGTAAGGGTGTTAAGAGAA+CGG - chr5.2:80597449-80597468 None:intergenic 45.0%
AGTGCAAGCAGCTAGTTCGA+GGG + chr5.2:80598726-80598745 MS.gene81314:CDS 50.0%
CTTGACTCTCCAGGATGATC+TGG - chr5.2:80597134-80597153 None:intergenic 50.0%
GCTTGAAAATCCTGTGGCAG+CGG - chr5.2:80599084-80599103 None:intergenic 50.0%
GGGTCGGCAAACACGAAATT+TGG - chr5.2:80599126-80599145 None:intergenic 50.0%
GTTTGCCGACCCAACAGAAA+TGG + chr5.2:80599134-80599153 MS.gene81314:CDS 50.0%
TGCACCCATTTCTGTTGGGT+CGG - chr5.2:80599142-80599161 None:intergenic 50.0%
TTTCGTGATCGTGCTCGTGT+AGG + chr5.2:80599018-80599037 MS.gene81314:CDS 50.0%
! GGTGATGGCAACTCAAGTGA+TGG + chr5.2:80599216-80599235 MS.gene81314:CDS 50.0%
! GTAAGGAGCGCATCCAAATC+CGG + chr5.2:80597857-80597876 MS.gene81314:intron 50.0%
! TAAGGAGCGCATCCAAATCC+GGG + chr5.2:80597858-80597877 MS.gene81314:intron 50.0%
!! GATAGAGAACTTGGTGGTGG+TGG + chr5.2:80599189-80599208 MS.gene81314:CDS 50.0%
GAGTGCAAGCAGCTAGTTCG+AGG + chr5.2:80598725-80598744 MS.gene81314:CDS 55.0%
TCTGGTGGTCCAGATCATCC+TGG + chr5.2:80597122-80597141 MS.gene81314:CDS 55.0%
TGAAAATCCTGTGGCAGCGG+CGG - chr5.2:80599081-80599100 None:intergenic 55.0%
!! AGAGAACTTGGTGGTGGTGG+TGG + chr5.2:80599192-80599211 MS.gene81314:CDS 55.0%
!! GAACTTGGTGGTGGTGGTGG+TGG + chr5.2:80599195-80599214 MS.gene81314:CDS 60.0%
AAATCCTGTGGCAGCGGCGG+TGG - chr5.2:80599078-80599097 None:intergenic 65.0%
GTGGAGGTGGAGGTGGAGGT+GGG - chr5.2:80599056-80599075 None:intergenic 65.0%
TGGAGGTGGAGGTGGAGGTG+GGG - chr5.2:80599055-80599074 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTGA+TGG + chr5.2:80599201-80599220 MS.gene81314:CDS 65.0%
GGAGGTGGAGGTGGAGGTGG+GGG - chr5.2:80599054-80599073 None:intergenic 70.0%
GGTGGAGGTGGAGGTGGAGG+TGG - chr5.2:80599057-80599076 None:intergenic 70.0%
!! GGTGGTGGAGGTGGAGGTGG+AGG - chr5.2:80599060-80599079 None:intergenic 70.0%
TCCACCACCGCCGCTGCCAC+AGG + chr5.2:80599071-80599090 MS.gene81314:CDS 75.0%
TCCTGTGGCAGCGGCGGTGG+TGG - chr5.2:80599075-80599094 None:intergenic 75.0%
! TGTGGCAGCGGCGGTGGTGG+AGG - chr5.2:80599072-80599091 None:intergenic 75.0%
!! AGCGGCGGTGGTGGAGGTGG+AGG - chr5.2:80599066-80599085 None:intergenic 75.0%
!! GGCGGTGGTGGAGGTGGAGG+TGG - chr5.2:80599063-80599082 None:intergenic 75.0%
!!! GGCAGCGGCGGTGGTGGAGG+TGG - chr5.2:80599069-80599088 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 80597116 80599278 80597116 ID=MS.gene81314
chr5.2 mRNA 80597116 80599278 80597116 ID=MS.gene81314.t1;Parent=MS.gene81314
chr5.2 exon 80597116 80597158 80597116 ID=MS.gene81314.t1.exon1;Parent=MS.gene81314.t1
chr5.2 CDS 80597116 80597158 80597116 ID=cds.MS.gene81314.t1;Parent=MS.gene81314.t1
chr5.2 exon 80598719 80599278 80598719 ID=MS.gene81314.t1.exon2;Parent=MS.gene81314.t1
chr5.2 CDS 80598719 80599278 80598719 ID=cds.MS.gene81314.t1;Parent=MS.gene81314.t1
Gene Sequence

>MS.gene81314

ATGGCTTCTGGTGGTCCAGATCATCCTGGAGAGTCAAGTTCAAGTAAGCACTTCACTTCCAAAGATTTAAACTTGTAAAGCTTAATGTGTTTTTTTTAATGAAAAATATAATGTGTTTTCAATTTTACAATTCAGTGCTAAAAACTCATTGAATAAAGATCATATGATTTACAACGTTTCTTCACGACATTATGTGTGTATGTATTGATTATATTGATACTTGTAATGGTTTAGATAATTTTCTACAACATTCTTTCAAAAACAAAATTAAATTCTTAGTTTTACTATATGATAATTGATTTTTGCTAACTTTCTTTGAGTTTTTCGATTCCGTTCTCTTAACACCCTTACCCTCTTCAAATTTCGTTAATAATCACAAAGTAAATCTAGTCAGGATATAAAAGTCATTGGATAAAGACCAGATGATTTACATTTTGAATTTAAAAATTGGATTAAAAAACAAGCTTCAAATGTAAGTCATTTGTTCTATCTTCATCCGACGACTATGGTCTTAATTCTCTCTCCCAAGCATGTATGTGTTTTAATTTTATTCTAGGAACAATAGTCATTGTTGGGTTTTTAACTAATGTTTTTTGAGAAAATTCATTAATGAAAAATTAAAGTGATATCACATATCCCCCAAATATGTATATATGGATCTTCTGCTTCATGAAAGAGATAGAGAGAGATAACGAAAATTGTTGTAAAAGATAGAGATGTGGAGAGGCATATCAAGACAAAGTAAGGAGCGCATCCAAATCCGGGAGAGAATCTTGAAATTTTGGTTTGAAACTATTGATCTCTCTATCTCTTTTACTCTTTGTTTGTTTGTCTCGGAGTGACCAAGAAAATAAATTTTTTTATCTTTCATTTATGTGACATTTAATATTTTGCTCTTGATATGATATATTTTTAATTTTTCGTAAATAAAAAGTTAAATTCACCCAGAAATTATACTATCTTTTTACCAAGATGGAATTGTACCTTTTGAACTGTTTTTTCTTGTTATCATGCAATATAATATACTCATGCATAATATGTTTTACATTTGATATTTATTTTCTTGTAAGTCATATCTCCTTTCTAATGTAAACCATTATACAACATAGATGTGTTGCACCGATCACGATTCAATTTCAATCAGTTTTCTTAGAAGAGTTTTACGTTACACATGAAAAAAGCATAATATACTTTATTTTTTTCATGCCATAATTGCGATTGTTGTACGTATCTGCCATGCACATTTTCTTTTCCCAATGTATGCGAGGTCATTTTTTGTCCTCAAGTTCTTTTTGTCCACAAGCTAGTGTGTGAGTTTTAGACTTTGCATAGTTGGAGTCTTATTGCATTACCATGCATATATACCTTTTTTTGGTATATATACCTTTTAAAAACATTTATTTCTGACTAAGTGTTTAATTTTCTCTCACTATCATTGGTTATACTATACTCAAACTGTTTAATGAAGTTCATGAAAAGAAACATATTAGTAAAACAAAGAGTGCTATTATAGCTAGCAAGCATTTATGTTTGGATTTTGAAAAAAATTATATAACTGCTACTTCACGCCAATTATATATAACGACTATTGTGGTGATGTTAGAGGATGGAGTGCAAGCAGCTAGTTCGAGGGTGCAAGAAGAATTTTCAAGAGCCTTTCCCATTGCCAATGTGCATAGGTTGATGAAAAAAGCACTTCCAAAACATGCAAAGATAACCGATGAAAGCAAGGAAATTATGGTGAAATATGCAGCTGAATTCATTAGCTTTGTTACTGCTGAGGCCAACCATTATTGCAAGTTAGATTATAGGACAACAGTTACTGCTGAAGATTTGTTAATTACAATGCACAAATTGGGTTTTGATGTCTATGCTGAGTATTCCTTCCGCTACATCCAACTTTTTCGTGATCGTGCTCGTGTAGGTCAATATGCTCCCCCACCTCCACCTCCACCTCCACCACCGCCGCTGCCACAGGATTTTCAAGCTCATAATTTCCCGTTGGATCCAAATTTCGTGTTTGCCGACCCAACAGAAATGGGTGCAATTTTAGGAGATGATGATGATGATGATGATAGAGAACTTGGTGGTGGTGGTGGTGGTGATGGCAACTCAAGTGATGGAAGCTTTGATGTTATGGCTTTTCTTAATAGTGATGACTAA
Protein sequence

>MS.gene81314.t1

MASGGPDHPGESSSKDGVQAASSRVQEEFSRAFPIANVHRLMKKALPKHAKITDESKEIMVKYAAEFISFVTAEANHYCKLDYRTTVTAEDLLITMHKLGFDVYAEYSFRYIQLFRDRARVGQYAPPPPPPPPPPPLPQDFQAHNFPLDPNFVFADPTEMGAILGDDDDDDDRELGGGGGGDGNSSDGSFDVMAFLNSDD