AlfalfaGEDB | MS.gene81444

M. sativa cultivar XinJiangDaYe / MS.gene81444

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81444.t1	KEH26369.1	46.9	320	71	3	55	287	229	536	2.10E-55	226.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81444.t1	Q9FLX8	45.5	55	29	1	90	144	186	239	2.0e-06	54.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81444.t1	A0A072U999	46.9	320	71	3	55	287	229	536	1.5e-55	226.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene81444.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81444.t1	MTR_6g053200	79.798	198	28	2	90	287	351	536	2.51e-103	311
MS.gene81444.t1	MTR_6g053200	87.356	87	11	0	3	89	177	263	3.89e-16	78.6
MS.gene81444.t1	MTR_2g024380	48.241	199	102	1	90	287	272	470	3.40e-55	185
MS.gene81444.t1	MTR_2g024350	45.729	199	107	1	90	287	29	227	1.43e-54	177
MS.gene81444.t1	MTR_7g104980	50.739	203	98	2	86	287	14	215	7.42e-52	169
MS.gene81444.t1	MTR_8g067650	37.755	196	81	5	90	283	360	516	3.52e-29	116
MS.gene81444.t1	MTR_8g067635	38.919	185	78	5	90	272	370	521	1.33e-25	106
MS.gene81444.t1	MTR_8g069935	60.417	48	19	0	90	137	352	399	1.89e-12	67.4
MS.gene81444.t1	MTR_1g099600	50.000	54	26	1	91	144	207	259	1.36e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTTGACTGTTATTGTT+TGG	-	43392:75010-75029	MS.gene81444:intergenic	30.0%
AACATTATCACTAGTGTTCA+TGG	+	43392:74923-74942	MS.gene81444:CDS	30.0%
AACGAGTGATATATTTGTTC+AGG	-	43392:75878-75897	MS.gene81444:intergenic	30.0%
ACAAATATATCACTCGTTTC+AGG	+	43392:75880-75899	MS.gene81444:intron	30.0%
ATGGACAAAAAAACATTAGC+GGG	+	43392:75355-75374	MS.gene81444:intron	30.0%
ATTTGGTAAAATCCTAGATC+TGG	-	43392:75113-75132	MS.gene81444:intergenic	30.0%
CAAATATATCACTCGTTTCA+GGG	+	43392:75881-75900	MS.gene81444:intron	30.0%
GAAATAGAAAACCAACATTG+AGG	-	43392:76610-76629	MS.gene81444:intergenic	30.0%
TATGTCAGAGGATTTCTTAT+TGG	+	43392:76574-76593	MS.gene81444:CDS	30.0%
TGATTGATTGAGCTTTCTTA+GGG	-	43392:75071-75090	MS.gene81444:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
43392	gene	74761	76634	74761	ID=MS.gene81444
43392	mRNA	74761	76634	74761	ID=MS.gene81444.t1;Parent=MS.gene81444
43392	exon	74761	75026	74761	ID=MS.gene81444.t1.exon1;Parent=MS.gene81444.t1
43392	CDS	74761	75026	74761	ID=cds.MS.gene81444.t1;Parent=MS.gene81444.t1
43392	exon	76037	76634	76037	ID=MS.gene81444.t1.exon2;Parent=MS.gene81444.t1
43392	CDS	76037	76634	76037	ID=cds.MS.gene81444.t1;Parent=MS.gene81444.t1

Gene Sequence

>MS.gene81444

ATGCCAACCAATAATTTCAATACTCCCACCCTCACCACTCCTTGCACCCCAACTAGACTTACTCCCATGACCACTACCAACGCCTTCGCTAACCCCACAACAACTTTTTTCACTCCAACCACCACTGGACCTATTAGCCCTAGCACCACCACCAACTTGACTAACATTATCACTAGTGTTCATGGAACCAGTCAATATCCTACCATTTCAGATTATGCAATACTCATCAAACAACAACAAATTCAACCAAACAATAACAGTCAAGTGTTTGATCATGCATACAACTATTCATTTGTTCCACAACAACCCCTAAGAAAGCTCAATCAATCACAAATTCAATTACCCAACACCAGATCTAGGATTTTACCAAATTCAGATTCACAAAAAGCAAATCATAATTCAAGAATCAGGTAAATCATTTATTATTTTGATTTAAATTATTTTTATTATAAATCAATCTTAATGCATTTTAATAATCGAAACATTTAAATGATTTATCTTTCTTATCTTACAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAACAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGTCTTTTCACATTCAAAAATCTAACTTTTACGTATTCTTGTTTTATTTCATAATAAAAACAATAATTATGTGATCTAATACAGACATGATACCTTGAGTTTTAAATAGTGGTCTCTAGCATTACCATCCTTGCCATTGCACTAATTGTGGTCTTAACCTAGGTTTTGTTTGTGTTTCAATTTCAAAAAGATAATAAATTAGTACTCTATTCTAAAAAATGCGTAACATATTTAAAAAATAAAAAGTATGTTATAAAATGAGTGTCATTTTCAATATTCTATGTAATATCAAAATTAATGTATTTTTGGTTTAAGTACAAAATGGATCACTTTCTTCGTCTAATCCATGTAAAAGTTTTGATTGTTACTTTTATTCATTGCAAATATAACACCTTTTTATTTTTTCTACTTGTTGTTTGTTTTTGTTCCCATAAAATTTATTTATCTTAAAATTAGTTCCTGAATATTCATATTAATCCTTATTCCTGAACAAATATATCACTCGTTTCAGGGAGGGAGTTGGGTTGTAACATTTATGTAAAACTTGACCAAATAAACATATATTTTTAGTATATGATTTTAGCTTTTAAAGTGATACGATTTAGAGGTGTTTGATATAGAAAACAATCCTTGAATGATTTTTCAGGAGCTACTTTAAATGTAGCAGTTCTAAAGATTGTTCAGCAAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAACCATGAAAAACCAGCAGGTAAACGGAACTCTATTGGTGGGACCTACCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAAGTCGTCACCAAACATTTCAAAGCCAGGTTCTCAAAATGTGACGATGATGCATGTCGATCATCCAGAGAGTAGGAATATTCAAGTTCTCCCTAGTCAATCAGAAATCCCTTTAGAAACTGAACTTATAGAGACCCATTTACCCGCTGCTAGAGAAATTGAATCATCTCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTATTGTTTGATGAGCCAATGAGTAGCAATGCCCAGGTTTACTCCGGTGAATCACAAATCCTTCCTTCAGGAAACATACTTATTGGAAACTCTGATGATGATGAAGAAATTATGATACCAAACATGACTGATATGTCAGAGGATTTCTTATTGGATTTTGACCACCTCAATGTTGGTTTTCTATTTCCTTAG

Protein sequence

>MS.gene81444.t1

MPTNNFNTPTLTTPCTPTRLTPMTTTNAFANPTTTFFTPTTTGPISPSTTTNLTNIITSVHGTSQYPTISDYAILIKQQQIQPNNNSQVSYFKCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKRNSIGGTYQNKSSKTRLPAVGNFKSSPNISKPGSQNVTMMHVDHPESRNIQVLPSQSEIPLETELIETHLPAAREIESSPNVENLFSYDVTMLLFDEPMSSNAQVYSGESQILPSGNILIGNSDDDEEIMIPNMTDMSEDFLLDFDHLNVGFLFP