Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81458.t1 | XP_013461367.1 | 92.2 | 51 | 4 | 0 | 1 | 51 | 1 | 51 | 8.10E-18 | 100.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81458.t1 | Q6R0C4 | 73.7 | 38 | 10 | 0 | 14 | 51 | 3 | 40 | 3.1e-10 | 66.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81458.t1 | A0A072V0T7 | 92.2 | 51 | 4 | 0 | 1 | 51 | 1 | 51 | 5.8e-18 | 100.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81458.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81458.t1 | MTR_3g089045 | 90.385 | 52 | 5 | 0 | 1 | 52 | 1 | 52 | 5.93e-27 | 103 |
| MS.gene81458.t1 | MTR_4g117140 | 60.000 | 130 | 42 | 2 | 57 | 176 | 398 | 527 | 5.19e-25 | 100 |
| MS.gene81458.t1 | MTR_4g117220 | 55.285 | 123 | 34 | 2 | 73 | 176 | 392 | 512 | 1.12e-15 | 74.3 |
| MS.gene81458.t1 | MTR_6g074860 | 69.231 | 39 | 12 | 0 | 14 | 52 | 2 | 40 | 4.41e-13 | 65.5 |
| MS.gene81458.t1 | MTR_4g082040 | 65.854 | 41 | 14 | 0 | 11 | 51 | 100 | 140 | 4.40e-12 | 63.5 |
| MS.gene81458.t1 | MTR_7g086960 | 52.727 | 55 | 23 | 1 | 1 | 52 | 71 | 125 | 5.48e-12 | 63.2 |
| MS.gene81458.t1 | MTR_5g041570 | 61.905 | 42 | 16 | 0 | 11 | 52 | 129 | 170 | 1.31e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81458.t1 | AT1G17950 | 71.795 | 39 | 11 | 0 | 14 | 52 | 3 | 41 | 1.06e-13 | 67.4 |
| MS.gene81458.t1 | AT1G73410 | 73.684 | 38 | 10 | 0 | 14 | 51 | 4 | 41 | 1.09e-12 | 63.9 |
| MS.gene81458.t1 | AT1G73410 | 73.684 | 38 | 10 | 0 | 14 | 51 | 4 | 41 | 1.26e-12 | 64.3 |
| MS.gene81458.t1 | AT4G33450 | 57.692 | 52 | 21 | 1 | 1 | 51 | 3 | 54 | 4.31e-12 | 62.8 |
| MS.gene81458.t1 | AT1G69560 | 69.231 | 39 | 12 | 0 | 13 | 51 | 120 | 158 | 2.38e-11 | 61.6 |
| MS.gene81458.t1 | AT1G69560 | 69.231 | 39 | 12 | 0 | 13 | 51 | 104 | 142 | 2.63e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATATGGTGCTGAAAAT+TGG | 0.291230 | 6.4:-20135372 | MS.gene81458:CDS |
| CGTCAGCTTGTTGAACAATA+TGG | 0.319582 | 6.4:-20135385 | MS.gene81458:CDS |
| TAAGGATCTGGAGGAGGATA+AGG | 0.339463 | 6.4:+20134095 | None:intergenic |
| TTACCACCCATTTGGTTCAT+TGG | 0.340765 | 6.4:-20134255 | MS.gene81458:CDS |
| TTACCACCCATTTGGTTCAT+TGG | 0.340765 | 6.4:+20134541 | None:intergenic |
| CGGGAATGTTACCACCCATT+TGG | 0.397076 | 6.4:-20134263 | MS.gene81458:CDS |
| CGGGAATGTTACCACCCATT+TGG | 0.397076 | 6.4:+20134533 | None:intergenic |
| TGGTTCATTGGCATATTCAT+TGG | 0.404289 | 6.4:+20134553 | None:intergenic |
| TGGTTCATTGGCATACTCAT+TGG | 0.433991 | 6.4:-20134243 | MS.gene81458:CDS |
| GGTAACATTCCCGCTGTTCA+AGG | 0.449548 | 6.4:+20134273 | None:intergenic |
| GGTAACATTCCCGCTGTTCA+AGG | 0.449548 | 6.4:-20134523 | MS.gene81458:CDS |
| GAATATGCCAATGAACCAAA+TGG | 0.463745 | 6.4:-20134548 | MS.gene81458:CDS |
| GGTCTACCAGCAGGCGGACG+AGG | 0.464251 | 6.4:-20134502 | MS.gene81458:CDS |
| AAGGATCTGGAGGAGGATAA+GGG | 0.466318 | 6.4:+20134096 | None:intergenic |
| AAAGCATGTGAGTAAGGATC+TGG | 0.469198 | 6.4:+20134083 | None:intergenic |
| AATGCATACCTGATATTCCT+TGG | 0.469302 | 6.4:+20135329 | None:intergenic |
| AAGTATCCTCGTCCGCCTGC+TGG | 0.472984 | 6.4:+20134496 | None:intergenic |
| TCACTGAAAGCATGTGAGTA+AGG | 0.480372 | 6.4:+20134077 | None:intergenic |
| GCCGGTAGACCTTGAACAGC+GGG | 0.491898 | 6.4:-20134282 | MS.gene81458:intron |
| AGAGTTGTCCACGTGGTCAC+TGG | 0.498220 | 6.4:-20135432 | MS.gene81458:CDS |
| GGTGGCCTTGCATACATCAT+TGG | 0.501791 | 6.4:+20134149 | None:intergenic |
| AGGCCCGCTGAGTATGCCAA+TGG | 0.503273 | 6.4:-20134599 | MS.gene81458:CDS |
| TCTGGAGGAGGATAAGGGTA+AGG | 0.506412 | 6.4:+20134101 | None:intergenic |
| AGGTCCGCTGAGTATGCCAA+TGG | 0.510814 | 6.4:+20134197 | None:intergenic |
| CACCCATTGGCATACTCAGC+GGG | 0.516695 | 6.4:+20134596 | None:intergenic |
| GAGTATGCCAATGAACCAAA+TGG | 0.517292 | 6.4:+20134248 | None:intergenic |
| CTGAGTATGCCAATGGGTGG+TGG | 0.525067 | 6.4:-20134592 | MS.gene81458:CDS |
| ACATCACATACTATTGCAGC+TGG | 0.526445 | 6.4:+20134043 | None:intergenic |
| ATTGGCATACTCAGCGGACC+TGG | 0.528746 | 6.4:-20134195 | MS.gene81458:CDS |
| GTGACCACGTGGACAACTCT+TGG | 0.531230 | 6.4:+20135435 | None:intergenic |
| GCTGGTAGACCTTGAACAGC+GGG | 0.540070 | 6.4:+20134514 | None:intergenic |
| CTGAGTATGCCAATGGGTGG+TGG | 0.540107 | 6.4:+20134204 | None:intergenic |
| GGCGGACGAGGATACTTTCA+AGG | 0.543946 | 6.4:-20134490 | MS.gene81458:intron |
| GGAGGAGGATAAGGGTAAGG+AGG | 0.547967 | 6.4:+20134104 | None:intergenic |
| TTATTACCTCCACCACCCAT+TGG | 0.551672 | 6.4:-20134213 | MS.gene81458:CDS |
| TTATTACCTCCACCACCCAT+TGG | 0.551672 | 6.4:+20134583 | None:intergenic |
| GGCCCGCTGAGTATGCCAAT+GGG | 0.553274 | 6.4:-20134598 | MS.gene81458:CDS |
| GCTGTTCAAGGTCTACCAGC+AGG | 0.565222 | 6.4:-20134511 | MS.gene81458:CDS |
| AATATGCCAATGAACCAAAT+GGG | 0.576628 | 6.4:-20134547 | MS.gene81458:CDS |
| AGCAGCCAATGATGTATGCA+AGG | 0.586173 | 6.4:-20134154 | MS.gene81458:CDS |
| TACATGTAATTCACCTCAAG+AGG | 0.588223 | 6.4:+20134128 | None:intergenic |
| AGTATGCCAATGGGTGGTGG+AGG | 0.595369 | 6.4:+20134207 | None:intergenic |
| AGTATGCCAATGGGTGGTGG+AGG | 0.595369 | 6.4:-20134589 | MS.gene81458:CDS |
| TGCTGGTAGACCTTGAACAG+CGG | 0.600955 | 6.4:+20134513 | None:intergenic |
| TGTGAGTAAGGATCTGGAGG+AGG | 0.603879 | 6.4:+20134089 | None:intergenic |
| GGTCCGCTGAGTATGCCAAT+GGG | 0.606777 | 6.4:+20134198 | None:intergenic |
| ATGTAATTCACCTCAAGAGG+TGG | 0.609219 | 6.4:+20134131 | None:intergenic |
| AGTATGCCAATGAACCAAAT+GGG | 0.610690 | 6.4:+20134249 | None:intergenic |
| GTATGCAAGGCCACCTCTTG+AGG | 0.628233 | 6.4:-20134141 | MS.gene81458:CDS |
| TGCCGGTAGACCTTGAACAG+CGG | 0.630038 | 6.4:-20134283 | MS.gene81458:intron |
| GCATGTGAGTAAGGATCTGG+AGG | 0.633919 | 6.4:+20134086 | None:intergenic |
| CCACCCATTGGCATACTCAG+CGG | 0.654121 | 6.4:+20134595 | None:intergenic |
| GGTGGTGGAGGTAATAATGT+GGG | 0.662176 | 6.4:+20134219 | None:intergenic |
| GGTGGTGGAGGTAATAATGT+GGG | 0.662176 | 6.4:-20134577 | MS.gene81458:CDS |
| ATGCCAATGAACCAAATGGG+TGG | 0.670290 | 6.4:-20134544 | MS.gene81458:CDS |
| GGGTGGTGGAGGTAATAATG+TGG | 0.672373 | 6.4:+20134218 | None:intergenic |
| GGGTGGTGGAGGTAATAATG+TGG | 0.672373 | 6.4:-20134578 | MS.gene81458:CDS |
| CCGCTGAGTATGCCAATGGG+TGG | 0.673311 | 6.4:-20134595 | MS.gene81458:CDS |
| ATGCCAATGAACCAAATGGG+TGG | 0.690349 | 6.4:+20134252 | None:intergenic |
| GCAGGTCGCCAGTGACCACG+TGG | 0.690527 | 6.4:+20135424 | None:intergenic |
| CCGCTGAGTATGCCAATGGG+TGG | 0.699035 | 6.4:+20134201 | None:intergenic |
| CCACCCATTGGCATACTCAG+CGG | 0.700638 | 6.4:-20134201 | MS.gene81458:CDS |
| GTTCAAGGTCTACCAGCAGG+CGG | 0.701941 | 6.4:-20134508 | MS.gene81458:CDS |
| GATACCAAGAGTTGTCCACG+TGG | 0.762573 | 6.4:-20135439 | MS.gene81458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTTGAAAAATTAAATA+AGG | + | chr6.4:20134254-20134273 | None:intergenic | 10.0% |
| !!! | TATTTAATTTTTCAAATTCA+CGG | - | chr6.4:20134254-20134273 | MS.gene81458:CDS | 10.0% |
| !!! | TTTATATGTGTTTATATTTT+GGG | + | chr6.4:20134492-20134511 | None:intergenic | 10.0% |
| !! | ATATTGCATAAAATTAGAAA+GGG | - | chr6.4:20134692-20134711 | MS.gene81458:intron | 15.0% |
| !! | ATTTGAAAAATTAAATAAGG+CGG | + | chr6.4:20134251-20134270 | None:intergenic | 15.0% |
| !! | TATATTGCATAAAATTAGAA+AGG | - | chr6.4:20134691-20134710 | MS.gene81458:intron | 15.0% |
| !!! | GTTTATATGTGTTTATATTT+TGG | + | chr6.4:20134493-20134512 | None:intergenic | 15.0% |
| !! | AATGAAATGTTATTGAGAAT+GGG | + | chr6.4:20134447-20134466 | None:intergenic | 20.0% |
| !! | TAAAAAACTCATGTTTCATT+GGG | - | chr6.4:20134663-20134682 | MS.gene81458:intron | 20.0% |
| !! | TTCTATAAACTATTCCTTTA+TGG | - | chr6.4:20134579-20134598 | MS.gene81458:CDS | 20.0% |
| !! | TTGAAACTTTAATATTGCTA+TGG | - | chr6.4:20134409-20134428 | MS.gene81458:intron | 20.0% |
| !!! | ACTATGTTTATTTTGTTCTT+TGG | + | chr6.4:20134542-20134561 | None:intergenic | 20.0% |
| !!! | CTTTAAGCTTTATTACTAAT+CGG | - | chr6.4:20134217-20134236 | MS.gene81458:CDS | 20.0% |
| ! | CTAAAAAACTCATGTTTCAT+TGG | - | chr6.4:20134662-20134681 | MS.gene81458:intron | 25.0% |
| ! | GAATGAAATGTTATTGAGAA+TGG | + | chr6.4:20134448-20134467 | None:intergenic | 25.0% |
| !! | ATATAGTTGATTAGAAGTGT+TGG | - | chr6.4:20134285-20134304 | MS.gene81458:intron | 25.0% |
| !!! | TATAGTTGATTAGAAGTGTT+GGG | - | chr6.4:20134286-20134305 | MS.gene81458:intron | 25.0% |
| AATATGCCAATGAACCAAAT+GGG | - | chr6.4:20134965-20134984 | MS.gene81458:intron | 30.0% | |
| ATATCACATAATATTGCAGC+TGG | - | chr6.4:20134772-20134791 | MS.gene81458:intron | 30.0% | |
| TGATTCATCAAAACCAACAA+TGG | + | chr6.4:20134753-20134772 | None:intergenic | 30.0% | |
| TGATTCCCATTTCATCTTTA+GGG | + | chr6.4:20134617-20134636 | None:intergenic | 30.0% | |
| TGCATAAAATTAGAAAGGGT+AGG | - | chr6.4:20134696-20134715 | MS.gene81458:intron | 30.0% | |
| TTGATTCCCATTTCATCTTT+AGG | + | chr6.4:20134618-20134637 | None:intergenic | 30.0% | |
| ! | AACAATATGGTGCTGAAAAT+TGG | - | chr6.4:20134140-20134159 | MS.gene81458:CDS | 30.0% |
| ! | GAAATCTTTGATCATTTTCC+AGG | - | chr6.4:20134893-20134912 | MS.gene81458:intron | 30.0% |
| ! | GAAATCTTTGATCATTTTCC+AGG | + | chr6.4:20134912-20134893 | None:intergenic | 30.0% |
| AAACCCCCTAAAGATGAAAT+GGG | - | chr6.4:20134609-20134628 | MS.gene81458:intron | 35.0% | |
| AATGCATACCTGATATTCCT+TGG | + | chr6.4:20134186-20134205 | None:intergenic | 35.0% | |
| AGTATGCCAATGAACCAAAT+GGG | + | chr6.4:20135266-20135285 | None:intergenic | 35.0% | |
| ATCAAAACCAACAATGGTCA+TGG | + | chr6.4:20134747-20134766 | None:intergenic | 35.0% | |
| ATTCCCATTTCATCTTTAGG+GGG | + | chr6.4:20134615-20134634 | None:intergenic | 35.0% | |
| GAAAAACTCCAAGGAATATC+AGG | - | chr6.4:20134175-20134194 | MS.gene81458:CDS | 35.0% | |
| GAATATGCCAATGAACCAAA+TGG | - | chr6.4:20134964-20134983 | MS.gene81458:intron | 35.0% | |
| GATTCCCATTTCATCTTTAG+GGG | + | chr6.4:20134616-20134635 | None:intergenic | 35.0% | |
| GGGGTTTCTAATTACCATAA+AGG | + | chr6.4:20134596-20134615 | None:intergenic | 35.0% | |
| TACATGTAATTCACCTCAAG+AGG | + | chr6.4:20135387-20135406 | None:intergenic | 35.0% | |
| TGGTTCATTGGCATATTCAT+TGG | + | chr6.4:20134962-20134981 | None:intergenic | 35.0% | |
| ! | TGTTGCTGTTGTTGTTGATA+AGG | - | chr6.4:20135146-20135165 | MS.gene81458:intron | 35.0% |
| ! | TGTTGCTGTTGTTGTTGATA+AGG | + | chr6.4:20135165-20135146 | None:intergenic | 35.0% |
| ! | TTTCTGAAAGCATGTGAGTA+AGG | - | chr6.4:20134806-20134825 | MS.gene81458:intron | 35.0% |
| AAAGCATGTGAGTAAGGATC+TGG | - | chr6.4:20134812-20134831 | MS.gene81458:intron | 40.0% | |
| AAAGCATGTGAGTAAGGATC+TGG | + | chr6.4:20134831-20134812 | None:intergenic | 40.0% | |
| ATGTAATTCACCTCAAGAGG+TGG | + | chr6.4:20135384-20135403 | None:intergenic | 40.0% | |
| GAAACCCCCTAAAGATGAAA+TGG | - | chr6.4:20134608-20134627 | MS.gene81458:intron | 40.0% | |
| GAGTATGCCAATGAACCAAA+TGG | + | chr6.4:20135267-20135286 | None:intergenic | 40.0% | |
| GATCAAAGATTTCTGCAGCA+AGG | + | chr6.4:20134886-20134905 | None:intergenic | 40.0% | |
| GGATACATGTAATTCACCTC+AGG | - | chr6.4:20134854-20134873 | MS.gene81458:intron | 40.0% | |
| TACATGTAATTCACCTCAGG+AGG | - | chr6.4:20134857-20134876 | MS.gene81458:intron | 40.0% | |
| TCAACTGCTGAAAAACTCCA+AGG | - | chr6.4:20134166-20134185 | MS.gene81458:CDS | 40.0% | |
| TGGTTCATTGGCATACTCAT+TGG | - | chr6.4:20135269-20135288 | MS.gene81458:intron | 40.0% | |
| ! | CGAAGTTTTTCATCTTCAGC+AGG | + | chr6.4:20134109-20134128 | None:intergenic | 40.0% |
| ! | TCACTGAAAGCATGTGAGTA+AGG | + | chr6.4:20135438-20135457 | None:intergenic | 40.0% |
| ! | TTACCACCCATTTGGTTCAT+TGG | - | chr6.4:20135257-20135276 | MS.gene81458:intron | 40.0% |
| ! | TTACCACCCATTTGGTTCAT+TGG | + | chr6.4:20135276-20135257 | None:intergenic | 40.0% |
| !! | CGTCAGCTTGTTGAACAATA+TGG | - | chr6.4:20134127-20134146 | MS.gene81458:CDS | 40.0% |
| AAGGATCTGGAGGAGGATAA+GGG | - | chr6.4:20134825-20134844 | MS.gene81458:intron | 45.0% | |
| AAGGATCTGGAGGAGGATAA+GGG | + | chr6.4:20134844-20134825 | None:intergenic | 45.0% | |
| ACCAACAATGGTCATGGTGA+TGG | + | chr6.4:20134741-20134760 | None:intergenic | 45.0% | |
| ACCATCACCATGACCATTGT+TGG | - | chr6.4:20134737-20134756 | MS.gene81458:intron | 45.0% | |
| AGCAGCCAATGATGTATGCA+AGG | - | chr6.4:20135358-20135377 | MS.gene81458:CDS | 45.0% | |
| ATGCCAATGAACCAAATGGG+TGG | - | chr6.4:20134968-20134987 | MS.gene81458:intron | 45.0% | |
| ATGCCAATGAACCAAATGGG+TGG | + | chr6.4:20134987-20134968 | None:intergenic | 45.0% | |
| ATGTAATTCACCTCAGGAGG+TGG | - | chr6.4:20134860-20134879 | MS.gene81458:intron | 45.0% | |
| CGAGGATACTTTCAAGGTAG+TGG | - | chr6.4:20135028-20135047 | MS.gene81458:intron | 45.0% | |
| TAAGGATCTGGAGGAGGATA+AGG | - | chr6.4:20134824-20134843 | MS.gene81458:intron | 45.0% | |
| TAAGGATCTGGAGGAGGATA+AGG | + | chr6.4:20134843-20134824 | None:intergenic | 45.0% | |
| TTATTACCTCCACCACCCAT+TGG | - | chr6.4:20135299-20135318 | MS.gene81458:intron | 45.0% | |
| TTATTACCTCCACCACCCAT+TGG | + | chr6.4:20135318-20135299 | None:intergenic | 45.0% | |
| ! | ATTCCCCTGCATCATTTTCG+GGG | + | chr6.4:20135062-20135081 | None:intergenic | 45.0% |
| ! | GATTCCCCTGCATCATTTTC+GGG | + | chr6.4:20135063-20135082 | None:intergenic | 45.0% |
| ! | GGATACTTTCAAGGTAGTGG+TGG | - | chr6.4:20135031-20135050 | MS.gene81458:intron | 45.0% |
| ! | GGATTCCCCTGCATCATTTT+CGG | + | chr6.4:20135064-20135083 | None:intergenic | 45.0% |
| !! | GGTGGTGGAGGTAATAATGT+GGG | - | chr6.4:20134935-20134954 | MS.gene81458:intron | 45.0% |
| !! | GGTGGTGGAGGTAATAATGT+GGG | + | chr6.4:20134954-20134935 | None:intergenic | 45.0% |
| CGAGGATACTTTCAAGGTGG+TGG | + | chr6.4:20135203-20135222 | None:intergenic | 50.0% | |
| CGGGAATGTTACCACCCATT+TGG | - | chr6.4:20135249-20135268 | MS.gene81458:intron | 50.0% | |
| CGGGAATGTTACCACCCATT+TGG | + | chr6.4:20135268-20135249 | None:intergenic | 50.0% | |
| GATACCAAGAGTTGTCCACG+TGG | - | chr6.4:20134073-20134092 | MS.gene81458:CDS | 50.0% | |
| GATTCCCCTGCATCATTTCC+GGG | - | chr6.4:20135168-20135187 | MS.gene81458:intron | 50.0% | |
| GCATGTGAGTAAGGATCTGG+AGG | - | chr6.4:20134815-20134834 | MS.gene81458:intron | 50.0% | |
| GCATGTGAGTAAGGATCTGG+AGG | + | chr6.4:20134834-20134815 | None:intergenic | 50.0% | |
| GGACGAGGATACTTTCAAGG+TGG | + | chr6.4:20135044-20135025 | None:intergenic | 50.0% | |
| GGATTCCCCTGCATCATTTC+CGG | - | chr6.4:20135167-20135186 | MS.gene81458:intron | 50.0% | |
| GGTAACATTCCCGCTGTTCA+AGG | - | chr6.4:20134989-20135008 | MS.gene81458:intron | 50.0% | |
| GGTAACATTCCCGCTGTTCA+AGG | + | chr6.4:20135008-20134989 | None:intergenic | 50.0% | |
| TCTGGAGGAGGATAAGGGTA+AGG | - | chr6.4:20134830-20134849 | MS.gene81458:intron | 50.0% | |
| TCTGGAGGAGGATAAGGGTA+AGG | + | chr6.4:20134849-20134830 | None:intergenic | 50.0% | |
| TGCTGGTAGACCTTGAACAG+CGG | + | chr6.4:20135002-20135021 | None:intergenic | 50.0% | |
| TGTGAGTAAGGATCTGGAGG+AGG | - | chr6.4:20134818-20134837 | MS.gene81458:intron | 50.0% | |
| TGTGAGTAAGGATCTGGAGG+AGG | + | chr6.4:20134837-20134818 | None:intergenic | 50.0% | |
| ! | GGATACTTTCAAGGTGGTGG+TGG | + | chr6.4:20135200-20135219 | None:intergenic | 50.0% |
| ! | GGTGGCCTTGCATACATCAT+TGG | + | chr6.4:20135366-20135385 | None:intergenic | 50.0% |
| !! | GGGTGGTGGAGGTAATAATG+TGG | - | chr6.4:20134934-20134953 | MS.gene81458:intron | 50.0% |
| !! | GGGTGGTGGAGGTAATAATG+TGG | + | chr6.4:20134953-20134934 | None:intergenic | 50.0% |
| AGAGTTGTCCACGTGGTCAC+TGG | - | chr6.4:20134080-20134099 | MS.gene81458:CDS | 55.0% | |
| AGGTCCGCTGAGTATGCCAA+TGG | + | chr6.4:20135318-20135337 | None:intergenic | 55.0% | |
| ATTGGCATACTCAGCGGACC+TGG | - | chr6.4:20135317-20135336 | MS.gene81458:intron | 55.0% | |
| CACCCATTGGCATACTCAGC+GGG | + | chr6.4:20135331-20135312 | None:intergenic | 55.0% | |
| CAGCCCCGAAAATGATGCAG+GGG | - | chr6.4:20135056-20135075 | MS.gene81458:intron | 55.0% | |
| CCACCCATTGGCATACTCAG+CGG | - | chr6.4:20135311-20135330 | MS.gene81458:intron | 55.0% | |
| CCACCCATTGGCATACTCAG+CGG | + | chr6.4:20135330-20135311 | None:intergenic | 55.0% | |
| CCAGCCCCGAAAATGATGCA+GGG | - | chr6.4:20135055-20135074 | MS.gene81458:intron | 55.0% | |
| CTGAGTATGCCAATGGGTGG+TGG | - | chr6.4:20134920-20134939 | MS.gene81458:intron | 55.0% | |
| CTGAGTATGCCAATGGGTGG+TGG | + | chr6.4:20134939-20134920 | None:intergenic | 55.0% | |
| GCTGGTAGACCTTGAACAGC+GGG | + | chr6.4:20135001-20135020 | None:intergenic | 55.0% | |
| GCTGTTCAAGGTCTACCAGC+AGG | - | chr6.4:20135001-20135020 | MS.gene81458:intron | 55.0% | |
| GGAGGAGGATAAGGGTAAGG+AGG | - | chr6.4:20134833-20134852 | MS.gene81458:intron | 55.0% | |
| GGAGGAGGATAAGGGTAAGG+AGG | + | chr6.4:20134852-20134833 | None:intergenic | 55.0% | |
| GGCGGACGAGGATACTTTCA+AGG | - | chr6.4:20135022-20135041 | MS.gene81458:intron | 55.0% | |
| GGCGGACGAGGATACTTTCA+AGG | + | chr6.4:20135041-20135022 | None:intergenic | 55.0% | |
| GGTCCGCTGAGTATGCCAAT+GGG | + | chr6.4:20135317-20135336 | None:intergenic | 55.0% | |
| GTATGCAAGGCCACCTCTTG+AGG | - | chr6.4:20135371-20135390 | MS.gene81458:CDS | 55.0% | |
| GTGACCACGTGGACAACTCT+TGG | + | chr6.4:20134080-20134099 | None:intergenic | 55.0% | |
| GTTCAAGGTCTACCAGCAGG+CGG | - | chr6.4:20135004-20135023 | MS.gene81458:intron | 55.0% | |
| TCCAGCCCCGAAAATGATGC+AGG | - | chr6.4:20135054-20135073 | MS.gene81458:intron | 55.0% | |
| TCCCGCTGTTCAAGGTCTAC+CGG | + | chr6.4:20135016-20134997 | None:intergenic | 55.0% | |
| TGCCGGTAGACCTTGAACAG+CGG | - | chr6.4:20135229-20135248 | MS.gene81458:intron | 55.0% | |
| ! | AGTATGCCAATGGGTGGTGG+AGG | - | chr6.4:20134923-20134942 | MS.gene81458:intron | 55.0% |
| ! | AGTATGCCAATGGGTGGTGG+AGG | + | chr6.4:20134942-20134923 | None:intergenic | 55.0% |
| !! | TTTCAAGGTGGTGGTGGTCC+AGG | + | chr6.4:20135194-20135213 | None:intergenic | 55.0% |
| AAGTATCCTCGTCCGCCTGC+CGG | - | chr6.4:20135212-20135231 | MS.gene81458:intron | 60.0% | |
| AAGTATCCTCGTCCGCCTGC+TGG | + | chr6.4:20135231-20135212 | None:intergenic | 60.0% | |
| AGGCCCGCTGAGTATGCCAA+TGG | - | chr6.4:20134913-20134932 | MS.gene81458:intron | 60.0% | |
| ATTGGCATACTCAGCGGGCC+TGG | + | chr6.4:20134914-20134933 | None:intergenic | 60.0% | |
| CAGGCCCGGAAATGATGCAG+GGG | + | chr6.4:20135175-20135194 | None:intergenic | 60.0% | |
| CCAGGCCCGGAAATGATGCA+GGG | + | chr6.4:20135176-20135195 | None:intergenic | 60.0% | |
| CCGCTGAGTATGCCAATGGG+TGG | - | chr6.4:20134917-20134936 | MS.gene81458:intron | 60.0% | |
| CCGCTGAGTATGCCAATGGG+TGG | + | chr6.4:20134936-20134917 | None:intergenic | 60.0% | |
| GCCGGTAGACCTTGAACAGC+GGG | - | chr6.4:20135230-20135249 | MS.gene81458:intron | 60.0% | |
| GCTGTTCAAGGTCTACCGGC+AGG | + | chr6.4:20135230-20135249 | None:intergenic | 60.0% | |
| GGCCCGCTGAGTATGCCAAT+GGG | - | chr6.4:20134914-20134933 | MS.gene81458:intron | 60.0% | |
| GTTCAAGGTCTACCGGCAGG+CGG | + | chr6.4:20135227-20135246 | None:intergenic | 60.0% | |
| TCCAGGCCCGGAAATGATGC+AGG | + | chr6.4:20135177-20135196 | None:intergenic | 60.0% | |
| !! | CCCTGCATCATTTTCGGGGC+TGG | + | chr6.4:20135058-20135077 | None:intergenic | 60.0% |
| CCCTGCATCATTTCCGGGCC+TGG | - | chr6.4:20135173-20135192 | MS.gene81458:intron | 65.0% | |
| TGCAGCAAGGCCACCTCCTG+AGG | + | chr6.4:20134873-20134892 | None:intergenic | 65.0% | |
| GCAGGTCGCCAGTGACCACG+TGG | + | chr6.4:20134091-20134110 | None:intergenic | 70.0% | |
| GGTCTACCAGCAGGCGGACG+AGG | - | chr6.4:20135010-20135029 | MS.gene81458:intron | 70.0% | |
| !! | AGGTGGTGGTGGTCCAGGCC+CGG | + | chr6.4:20135189-20135208 | None:intergenic | 70.0% |
| GGTCTACCGGCAGGCGGACG+AGG | + | chr6.4:20135221-20135240 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 20134046 | 20135488 | 20134046 | ID=MS.gene81458 |
| chr6.4 | mRNA | 20134046 | 20135488 | 20134046 | ID=MS.gene81458.t1;Parent=MS.gene81458 |
| chr6.4 | exon | 20135338 | 20135488 | 20135338 | ID=MS.gene81458.t1.exon1;Parent=MS.gene81458.t1 |
| chr6.4 | CDS | 20135338 | 20135488 | 20135338 | ID=cds.MS.gene81458.t1;Parent=MS.gene81458.t1 |
| chr6.4 | exon | 20134491 | 20134619 | 20134491 | ID=MS.gene81458.t1.exon2;Parent=MS.gene81458.t1 |
| chr6.4 | CDS | 20134491 | 20134619 | 20134491 | ID=cds.MS.gene81458.t1;Parent=MS.gene81458.t1 |
| chr6.4 | exon | 20134046 | 20134296 | 20134046 | ID=MS.gene81458.t1.exon3;Parent=MS.gene81458.t1 |
| chr6.4 | CDS | 20134046 | 20134296 | 20134046 | ID=cds.MS.gene81458.t1;Parent=MS.gene81458.t1 |
| Gene Sequence |
| Protein sequence |
