Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81508.t1 | KEH26369.1 | 73.7 | 395 | 91 | 2 | 1 | 395 | 155 | 536 | 1.90E-120 | 442.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81508.t1 | Q9FLX8 | 51.0 | 98 | 46 | 2 | 154 | 251 | 144 | 239 | 3.3e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81508.t1 | A0A072U999 | 73.7 | 395 | 91 | 2 | 1 | 395 | 155 | 536 | 1.4e-120 | 442.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81508.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81508.t1 | MTR_6g053200 | 82.025 | 395 | 58 | 2 | 1 | 395 | 155 | 536 | 0.0 | 582 |
| MS.gene81508.t1 | MTR_2g024380 | 44.444 | 333 | 140 | 3 | 78 | 395 | 168 | 470 | 6.19e-84 | 264 |
| MS.gene81508.t1 | MTR_2g024350 | 48.458 | 227 | 117 | 0 | 169 | 395 | 1 | 227 | 2.00e-70 | 221 |
| MS.gene81508.t1 | MTR_8g067650 | 38.226 | 327 | 148 | 6 | 80 | 391 | 229 | 516 | 2.59e-61 | 206 |
| MS.gene81508.t1 | MTR_8g067635 | 37.433 | 374 | 151 | 6 | 57 | 380 | 181 | 521 | 1.27e-59 | 202 |
| MS.gene81508.t1 | MTR_8g069935 | 49.490 | 196 | 84 | 1 | 80 | 260 | 220 | 415 | 2.91e-53 | 184 |
| MS.gene81508.t1 | MTR_7g104980 | 49.749 | 199 | 99 | 1 | 197 | 395 | 18 | 215 | 1.02e-49 | 167 |
| MS.gene81508.t1 | MTR_1g099600 | 50.000 | 98 | 47 | 2 | 154 | 251 | 164 | 259 | 1.53e-26 | 108 |
| MS.gene81508.t1 | MTR_8g028565 | 46.939 | 98 | 49 | 2 | 153 | 250 | 134 | 228 | 8.46e-23 | 98.6 |
| MS.gene81508.t1 | MTR_7g105000 | 39.474 | 152 | 73 | 4 | 77 | 213 | 209 | 356 | 2.90e-22 | 97.4 |
| MS.gene81508.t1 | MTR_7g079040 | 45.918 | 98 | 52 | 1 | 153 | 250 | 131 | 227 | 5.40e-22 | 96.3 |
| MS.gene81508.t1 | MTR_7g109600 | 45.977 | 87 | 47 | 0 | 169 | 255 | 46 | 132 | 9.28e-20 | 88.6 |
| MS.gene81508.t1 | MTR_2g032030 | 46.753 | 77 | 40 | 1 | 177 | 253 | 268 | 343 | 1.28e-18 | 87.4 |
| MS.gene81508.t1 | MTR_8g098945 | 41.905 | 105 | 51 | 3 | 177 | 275 | 130 | 230 | 2.45e-18 | 84.7 |
| MS.gene81508.t1 | MTR_2g032030 | 46.753 | 77 | 40 | 1 | 177 | 253 | 268 | 343 | 3.19e-18 | 86.7 |
| MS.gene81508.t1 | MTR_7g062220 | 42.453 | 106 | 49 | 3 | 128 | 233 | 87 | 180 | 5.40e-17 | 81.6 |
| MS.gene81508.t1 | MTR_5g016610 | 43.529 | 85 | 45 | 1 | 152 | 233 | 172 | 256 | 7.12e-16 | 77.4 |
| MS.gene81508.t1 | MTR_2g016770 | 48.485 | 66 | 34 | 0 | 171 | 236 | 22 | 87 | 1.48e-15 | 75.5 |
| MS.gene81508.t1 | MTR_1g070455 | 45.122 | 82 | 42 | 1 | 157 | 235 | 271 | 352 | 1.65e-15 | 77.8 |
| MS.gene81508.t1 | MTR_2g016770 | 48.485 | 66 | 34 | 0 | 171 | 236 | 30 | 95 | 1.87e-15 | 75.1 |
| MS.gene81508.t1 | MTR_2g083870 | 50.794 | 63 | 31 | 0 | 177 | 239 | 81 | 143 | 1.89e-15 | 76.3 |
| MS.gene81508.t1 | MTR_8g087000 | 49.206 | 63 | 32 | 0 | 177 | 239 | 78 | 140 | 1.95e-15 | 75.9 |
| MS.gene81508.t1 | MTR_8g087000 | 49.206 | 63 | 32 | 0 | 177 | 239 | 77 | 139 | 2.30e-15 | 75.5 |
| MS.gene81508.t1 | MTR_4g127040 | 42.353 | 85 | 46 | 1 | 152 | 233 | 218 | 302 | 3.23e-15 | 76.3 |
| MS.gene81508.t1 | MTR_4g094908 | 50.000 | 62 | 31 | 0 | 177 | 238 | 267 | 328 | 9.72e-15 | 75.1 |
| MS.gene81508.t1 | MTR_4g082580 | 39.785 | 93 | 51 | 2 | 174 | 262 | 276 | 367 | 1.18e-14 | 75.5 |
| MS.gene81508.t1 | MTR_7g011820 | 45.455 | 66 | 35 | 1 | 174 | 239 | 408 | 472 | 2.37e-14 | 75.1 |
| MS.gene81508.t1 | MTR_7g011820 | 44.615 | 65 | 34 | 2 | 172 | 236 | 224 | 286 | 6.57e-11 | 64.3 |
| MS.gene81508.t1 | MTR_1g009613 | 34.286 | 105 | 64 | 1 | 146 | 245 | 227 | 331 | 3.92e-14 | 73.2 |
| MS.gene81508.t1 | MTR_0117s0040 | 38.272 | 81 | 50 | 0 | 170 | 250 | 68 | 148 | 7.17e-14 | 71.2 |
| MS.gene81508.t1 | MTR_5g042920 | 44.928 | 69 | 37 | 1 | 174 | 242 | 318 | 385 | 8.08e-14 | 73.2 |
| MS.gene81508.t1 | MTR_3g108960 | 36.667 | 90 | 56 | 1 | 145 | 233 | 282 | 371 | 8.74e-14 | 72.8 |
| MS.gene81508.t1 | MTR_8g099350 | 36.957 | 92 | 52 | 2 | 146 | 231 | 98 | 189 | 1.95e-13 | 71.2 |
| MS.gene81508.t1 | MTR_4g130900 | 31.579 | 114 | 72 | 3 | 127 | 239 | 313 | 421 | 1.81e-12 | 68.9 |
| MS.gene81508.t1 | MTR_7g080020 | 47.826 | 69 | 34 | 2 | 168 | 236 | 272 | 338 | 2.28e-12 | 69.3 |
| MS.gene81508.t1 | MTR_7g080020 | 42.424 | 66 | 37 | 1 | 176 | 241 | 493 | 557 | 4.32e-12 | 68.2 |
| MS.gene81508.t1 | MTR_2g045360 | 45.000 | 60 | 33 | 0 | 177 | 236 | 212 | 271 | 2.62e-12 | 68.2 |
| MS.gene81508.t1 | MTR_1g077780 | 42.029 | 69 | 39 | 1 | 174 | 242 | 60 | 127 | 2.66e-12 | 64.3 |
| MS.gene81508.t1 | MTR_4g094588 | 47.541 | 61 | 31 | 1 | 176 | 236 | 178 | 237 | 3.26e-12 | 67.4 |
| MS.gene81508.t1 | MTR_3g009470 | 51.613 | 62 | 28 | 2 | 175 | 236 | 279 | 338 | 5.16e-12 | 67.8 |
| MS.gene81508.t1 | MTR_3g009470 | 40.299 | 67 | 39 | 1 | 176 | 242 | 495 | 560 | 1.25e-11 | 66.6 |
| MS.gene81508.t1 | MTR_4g007060 | 40.964 | 83 | 48 | 1 | 171 | 252 | 123 | 205 | 5.60e-12 | 66.2 |
| MS.gene81508.t1 | MTR_4g132430 | 31.731 | 104 | 64 | 3 | 133 | 236 | 91 | 187 | 5.81e-12 | 67.0 |
| MS.gene81508.t1 | MTR_4g007060 | 40.964 | 83 | 48 | 1 | 171 | 252 | 157 | 239 | 6.38e-12 | 66.6 |
| MS.gene81508.t1 | MTR_7g100510 | 45.000 | 60 | 32 | 1 | 177 | 236 | 362 | 420 | 6.43e-12 | 67.0 |
| MS.gene81508.t1 | MTR_2g023930 | 33.010 | 103 | 65 | 3 | 135 | 236 | 266 | 365 | 7.09e-12 | 67.4 |
| MS.gene81508.t1 | MTR_3g009470 | 51.613 | 62 | 28 | 2 | 175 | 236 | 279 | 338 | 7.60e-12 | 67.0 |
| MS.gene81508.t1 | MTR_7g071120 | 50.000 | 68 | 32 | 2 | 169 | 236 | 159 | 224 | 7.96e-12 | 67.0 |
| MS.gene81508.t1 | MTR_7g080000 | 42.188 | 64 | 36 | 1 | 176 | 239 | 432 | 494 | 8.27e-12 | 67.4 |
| MS.gene81508.t1 | MTR_5g091390 | 46.774 | 62 | 32 | 1 | 176 | 237 | 157 | 217 | 9.08e-12 | 65.9 |
| MS.gene81508.t1 | MTR_3g056100 | 36.000 | 100 | 52 | 3 | 154 | 242 | 369 | 467 | 9.18e-12 | 67.0 |
| MS.gene81508.t1 | MTR_3g056100 | 36.000 | 100 | 52 | 3 | 154 | 242 | 382 | 480 | 9.65e-12 | 67.0 |
| MS.gene81508.t1 | MTR_5g094430 | 40.299 | 67 | 39 | 1 | 176 | 242 | 364 | 429 | 1.06e-11 | 66.6 |
| MS.gene81508.t1 | MTR_3g056100 | 40.299 | 67 | 39 | 1 | 176 | 242 | 258 | 323 | 1.09e-11 | 66.6 |
| MS.gene81508.t1 | MTR_3g056100 | 40.299 | 67 | 39 | 1 | 176 | 242 | 271 | 336 | 1.18e-11 | 66.2 |
| MS.gene81508.t1 | MTR_3g095040 | 37.681 | 69 | 40 | 3 | 173 | 240 | 115 | 181 | 1.44e-11 | 63.9 |
| MS.gene81508.t1 | MTR_5g094430 | 40.299 | 67 | 39 | 1 | 176 | 242 | 230 | 295 | 1.45e-11 | 65.9 |
| MS.gene81508.t1 | MTR_5g094430 | 40.299 | 67 | 39 | 1 | 176 | 242 | 252 | 317 | 1.50e-11 | 65.9 |
| MS.gene81508.t1 | MTR_4g132430 | 31.731 | 104 | 64 | 3 | 133 | 236 | 225 | 321 | 1.80e-11 | 65.9 |
| MS.gene81508.t1 | MTR_2g105060 | 42.188 | 64 | 37 | 0 | 174 | 237 | 92 | 155 | 1.82e-11 | 64.3 |
| MS.gene81508.t1 | MTR_3g106060 | 44.828 | 58 | 32 | 0 | 176 | 233 | 138 | 195 | 2.33e-11 | 64.7 |
| MS.gene81508.t1 | MTR_1g086790 | 38.028 | 71 | 43 | 1 | 176 | 246 | 158 | 227 | 3.26e-11 | 64.3 |
| MS.gene81508.t1 | MTR_5g097490 | 34.513 | 113 | 60 | 3 | 140 | 239 | 203 | 314 | 3.51e-11 | 64.7 |
| MS.gene81508.t1 | MTR_2g105060 | 42.188 | 64 | 37 | 0 | 174 | 237 | 167 | 230 | 4.64e-11 | 63.9 |
| MS.gene81508.t1 | MTR_1g013790 | 30.496 | 141 | 90 | 2 | 122 | 257 | 45 | 182 | 7.73e-11 | 62.4 |
| MS.gene81508.t1 | MTR_4g013260 | 40.625 | 64 | 37 | 1 | 176 | 239 | 336 | 398 | 9.89e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81508.t1 | AT4G01250 | 36.184 | 152 | 89 | 3 | 120 | 266 | 74 | 222 | 2.58e-23 | 99.4 |
| MS.gene81508.t1 | AT4G23550 | 45.349 | 86 | 46 | 1 | 168 | 253 | 132 | 216 | 2.94e-19 | 88.2 |
| MS.gene81508.t1 | AT5G52830 | 30.672 | 238 | 94 | 5 | 31 | 251 | 56 | 239 | 5.08e-19 | 87.8 |
| MS.gene81508.t1 | AT5G28650 | 42.391 | 92 | 50 | 1 | 147 | 235 | 230 | 321 | 1.30e-17 | 83.6 |
| MS.gene81508.t1 | AT3G04670 | 42.391 | 92 | 50 | 1 | 147 | 235 | 230 | 321 | 1.85e-17 | 83.2 |
| MS.gene81508.t1 | AT1G30650 | 34.000 | 150 | 95 | 1 | 130 | 279 | 175 | 320 | 2.86e-17 | 83.6 |
| MS.gene81508.t1 | AT5G45050 | 38.182 | 110 | 66 | 2 | 136 | 245 | 1002 | 1109 | 4.09e-17 | 84.0 |
| MS.gene81508.t1 | AT5G45050 | 38.182 | 110 | 66 | 2 | 136 | 245 | 1141 | 1248 | 4.32e-17 | 84.0 |
| MS.gene81508.t1 | AT2G34830 | 49.275 | 69 | 34 | 1 | 177 | 245 | 216 | 283 | 4.90e-17 | 82.8 |
| MS.gene81508.t1 | AT5G45050 | 38.182 | 110 | 66 | 2 | 136 | 245 | 1113 | 1220 | 5.24e-17 | 84.0 |
| MS.gene81508.t1 | AT2G34830 | 49.275 | 69 | 34 | 1 | 177 | 245 | 225 | 292 | 5.51e-17 | 82.8 |
| MS.gene81508.t1 | AT2G23320 | 44.706 | 85 | 44 | 1 | 152 | 233 | 213 | 297 | 7.45e-17 | 81.3 |
| MS.gene81508.t1 | AT4G24240 | 41.935 | 93 | 51 | 1 | 144 | 233 | 246 | 338 | 7.73e-16 | 78.6 |
| MS.gene81508.t1 | AT4G31550 | 39.785 | 93 | 53 | 1 | 152 | 241 | 219 | 311 | 8.23e-15 | 75.1 |
| MS.gene81508.t1 | AT3G58710 | 46.970 | 66 | 35 | 0 | 177 | 242 | 71 | 136 | 9.54e-15 | 74.3 |
| MS.gene81508.t1 | AT3G58710 | 46.970 | 66 | 35 | 0 | 177 | 242 | 72 | 137 | 9.76e-15 | 74.3 |
| MS.gene81508.t1 | AT2G24570 | 40.230 | 87 | 49 | 1 | 152 | 235 | 216 | 302 | 1.64e-14 | 74.3 |
| MS.gene81508.t1 | AT4G31550 | 38.000 | 100 | 59 | 1 | 145 | 241 | 211 | 310 | 2.64e-14 | 73.6 |
| MS.gene81508.t1 | AT1G29280 | 48.333 | 60 | 31 | 0 | 177 | 236 | 75 | 134 | 2.72e-14 | 72.8 |
| MS.gene81508.t1 | AT2G30590 | 40.230 | 87 | 49 | 1 | 152 | 235 | 286 | 372 | 9.42e-14 | 72.4 |
| MS.gene81508.t1 | AT2G03340 | 42.029 | 69 | 39 | 1 | 174 | 242 | 413 | 480 | 1.13e-13 | 72.8 |
| MS.gene81508.t1 | AT3G01080 | 37.634 | 93 | 47 | 2 | 154 | 236 | 312 | 403 | 4.07e-13 | 70.9 |
| MS.gene81508.t1 | AT5G43290 | 42.466 | 73 | 41 | 1 | 161 | 233 | 99 | 170 | 4.55e-13 | 69.3 |
| MS.gene81508.t1 | AT3G01080 | 44.444 | 63 | 34 | 1 | 174 | 236 | 304 | 365 | 5.18e-13 | 70.5 |
| MS.gene81508.t1 | AT1G80840 | 31.884 | 138 | 85 | 3 | 171 | 307 | 141 | 270 | 7.98e-13 | 68.9 |
| MS.gene81508.t1 | AT2G04880 | 46.032 | 63 | 33 | 1 | 177 | 239 | 284 | 345 | 1.42e-12 | 69.3 |
| MS.gene81508.t1 | AT2G04880 | 46.032 | 63 | 33 | 1 | 177 | 239 | 308 | 369 | 1.49e-12 | 69.3 |
| MS.gene81508.t1 | AT5G07100 | 46.970 | 66 | 34 | 1 | 171 | 236 | 19 | 83 | 4.66e-12 | 65.5 |
| MS.gene81508.t1 | AT5G07100 | 46.970 | 66 | 34 | 1 | 171 | 236 | 19 | 83 | 4.66e-12 | 65.5 |
| MS.gene81508.t1 | AT5G07100 | 46.970 | 66 | 34 | 1 | 171 | 236 | 19 | 83 | 4.66e-12 | 65.5 |
| MS.gene81508.t1 | AT5G07100 | 46.970 | 66 | 34 | 1 | 171 | 236 | 19 | 83 | 4.66e-12 | 65.5 |
| MS.gene81508.t1 | AT5G07100 | 46.970 | 66 | 34 | 1 | 171 | 236 | 112 | 176 | 4.77e-12 | 67.0 |
| MS.gene81508.t1 | AT5G45260 | 38.462 | 78 | 45 | 2 | 177 | 252 | 1209 | 1285 | 6.69e-12 | 67.8 |
| MS.gene81508.t1 | AT1G13960 | 41.270 | 63 | 36 | 1 | 174 | 236 | 254 | 315 | 7.62e-12 | 66.6 |
| MS.gene81508.t1 | AT1G13960 | 41.270 | 63 | 36 | 1 | 174 | 236 | 407 | 468 | 7.81e-12 | 67.0 |
| MS.gene81508.t1 | AT4G26640 | 42.308 | 78 | 42 | 3 | 174 | 250 | 169 | 244 | 8.35e-12 | 67.0 |
| MS.gene81508.t1 | AT4G26640 | 42.308 | 78 | 42 | 3 | 174 | 250 | 137 | 212 | 8.87e-12 | 67.0 |
| MS.gene81508.t1 | AT4G26640 | 42.308 | 78 | 42 | 3 | 174 | 250 | 209 | 284 | 9.41e-12 | 67.0 |
| MS.gene81508.t1 | AT4G26640 | 43.421 | 76 | 40 | 3 | 174 | 248 | 33 | 106 | 9.91e-12 | 66.2 |
| MS.gene81508.t1 | AT4G26640 | 43.421 | 76 | 40 | 3 | 174 | 248 | 33 | 106 | 9.91e-12 | 66.2 |
| MS.gene81508.t1 | AT4G26640 | 43.421 | 76 | 40 | 3 | 174 | 248 | 33 | 106 | 9.91e-12 | 66.2 |
| MS.gene81508.t1 | AT4G26640 | 43.421 | 76 | 40 | 3 | 174 | 248 | 33 | 106 | 9.91e-12 | 66.2 |
| MS.gene81508.t1 | AT4G31800 | 41.333 | 75 | 41 | 1 | 176 | 247 | 111 | 185 | 1.15e-11 | 64.7 |
| MS.gene81508.t1 | AT2G37260 | 38.272 | 81 | 45 | 2 | 157 | 233 | 326 | 405 | 1.51e-11 | 66.2 |
| MS.gene81508.t1 | AT1G29860 | 45.161 | 62 | 33 | 1 | 176 | 237 | 136 | 196 | 1.55e-11 | 65.1 |
| MS.gene81508.t1 | AT2G37260 | 38.272 | 81 | 45 | 2 | 157 | 233 | 246 | 325 | 1.64e-11 | 65.5 |
| MS.gene81508.t1 | AT2G37260 | 38.272 | 81 | 45 | 2 | 157 | 233 | 244 | 323 | 1.70e-11 | 65.5 |
| MS.gene81508.t1 | AT4G11070 | 38.235 | 102 | 57 | 2 | 136 | 231 | 65 | 166 | 1.87e-11 | 64.7 |
| MS.gene81508.t1 | AT5G56270 | 40.625 | 64 | 37 | 1 | 176 | 239 | 487 | 549 | 2.13e-11 | 66.2 |
| MS.gene81508.t1 | AT5G56270 | 48.387 | 62 | 30 | 2 | 175 | 236 | 272 | 331 | 7.99e-11 | 64.3 |
| MS.gene81508.t1 | AT4G11070 | 38.235 | 102 | 57 | 2 | 136 | 231 | 97 | 198 | 2.50e-11 | 64.7 |
| MS.gene81508.t1 | AT4G18170 | 45.902 | 61 | 32 | 1 | 176 | 236 | 172 | 231 | 2.77e-11 | 64.7 |
| MS.gene81508.t1 | AT4G31800 | 41.333 | 75 | 41 | 1 | 176 | 247 | 176 | 250 | 2.86e-11 | 64.3 |
| MS.gene81508.t1 | AT2G21900 | 45.161 | 62 | 33 | 1 | 176 | 237 | 109 | 169 | 2.94e-11 | 62.8 |
| MS.gene81508.t1 | AT4G30935 | 39.683 | 63 | 37 | 1 | 177 | 239 | 332 | 393 | 3.57e-11 | 65.1 |
| MS.gene81508.t1 | AT2G25000 | 44.262 | 61 | 34 | 0 | 176 | 236 | 103 | 163 | 3.65e-11 | 63.2 |
| MS.gene81508.t1 | AT2G25000 | 44.262 | 61 | 34 | 0 | 176 | 236 | 103 | 163 | 3.65e-11 | 63.2 |
| MS.gene81508.t1 | AT2G25000 | 44.262 | 61 | 34 | 0 | 176 | 236 | 125 | 185 | 4.06e-11 | 63.2 |
| MS.gene81508.t1 | AT2G47260 | 36.364 | 88 | 54 | 2 | 149 | 236 | 148 | 233 | 4.53e-11 | 63.9 |
| MS.gene81508.t1 | AT5G46350 | 39.706 | 68 | 40 | 1 | 176 | 243 | 183 | 249 | 9.37e-11 | 63.2 |
| MS.gene81508.t1 | AT2G25000 | 44.262 | 61 | 34 | 0 | 176 | 236 | 146 | 206 | 9.72e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAATATATGTTTATT+TGG | + | 43393:6380-6399 | MS.gene81508:intergenic | 10.0% |
| !! | AACAAGTAGAAAAAATAAAA+AGG | + | 43393:6223-6242 | MS.gene81508:intergenic | 15.0% |
| !! | TATCAAAATTAATGTATGTT+TGG | - | 43393:6115-6134 | MS.gene81508:intron | 15.0% |
| !! | AAGGATTAATATGAATATTC+AGG | + | 43393:6290-6309 | MS.gene81508:intergenic | 20.0% |
| !! | TTACAGAAAAATTAACAACA+AGG | - | 43393:5707-5726 | MS.gene81508:CDS | 20.0% |
| !!! | TAACAATCAAAACTTTTACA+TGG | + | 43393:6176-6195 | MS.gene81508:intergenic | 20.0% |
| ! | AATGAGTGATATATTTGTTC+AGG | + | 43393:6316-6335 | MS.gene81508:intergenic | 25.0% |
| ! | AATTAACAACAAGGTAACTT+TGG | - | 43393:5716-5735 | MS.gene81508:CDS | 25.0% |
| ! | ACAAATATATCACTCATTTC+AGG | - | 43393:6318-6337 | MS.gene81508:intron | 25.0% |
| ! | ATAAGTTCAGTTTCTGAATA+AGG | + | 43393:6785-6804 | MS.gene81508:intergenic | 25.0% |
| ! | ATTAAAGTGATACGATTTAG+AGG | - | 43393:6414-6433 | MS.gene81508:CDS | 25.0% |
| ! | CAAATATATCACTCATTTCA+GGG | - | 43393:6319-6338 | MS.gene81508:intron | 25.0% |
| ! | CAAATCATAATTCAAGAATC+AGG | - | 43393:5587-5606 | MS.gene81508:CDS | 25.0% |
| ! | GATATATTTGTTCAGGAATA+AGG | + | 43393:6309-6328 | MS.gene81508:intergenic | 25.0% |
| ! | TAAGTTCAGTTTCTGAATAA+GGG | + | 43393:6784-6803 | MS.gene81508:intergenic | 25.0% |
| ! | TATGGACAAAAAAACATTAG+CGG | - | 43393:5792-5811 | MS.gene81508:intron | 25.0% |
| !! | CAATCTATGAATGATTTTTC+AGG | - | 43393:6453-6472 | MS.gene81508:CDS | 25.0% |
| !! | GAAAACAAGTTTTCAACATT+AGG | + | 43393:6848-6867 | MS.gene81508:intergenic | 25.0% |
| !! | TGTTTGGTTTAAGTACAAAA+TGG | - | 43393:6131-6150 | MS.gene81508:intron | 25.0% |
| !!! | ATACCTTGAGTTTTAAATAG+TGG | - | 43393:5918-5937 | MS.gene81508:intron | 25.0% |
| AACACTTGACTGTTATTGTT+TGG | + | 43393:5448-5467 | MS.gene81506:intergenic | 30.0% | |
| AACATTATCACTAGTGTTCA+TGG | - | 43393:5361-5380 | MS.gene81508:CDS | 30.0% | |
| ATGGACAAAAAAACATTAGC+GGG | - | 43393:5793-5812 | MS.gene81508:intron | 30.0% | |
| ATTTGGTAAAATCCTAGATC+TGG | + | 43393:5551-5570 | MS.gene81508:intergenic | 30.0% | |
| GAAATAGAAAACCATCATTG+AGG | + | 43393:7051-7070 | MS.gene81508:intergenic | 30.0% | |
| TATGTCAGAGGATTTCTTAT+TGG | - | 43393:7015-7034 | MS.gene81508:CDS | 30.0% | |
| TGATTGATTGAGCTTTCTTA+GGG | + | 43393:5509-5528 | MS.gene81508:intergenic | 30.0% | |
| TTGAAACACAAACAAAACCT+AGG | + | 43393:5989-6008 | MS.gene81508:intergenic | 30.0% | |
| ! | ACTTTTATTGTGACGTTTGT+TGG | - | 43393:6551-6570 | MS.gene81508:intron | 30.0% |
| ! | AGACCACTATTTAAAACTCA+AGG | + | 43393:5924-5943 | MS.gene81508:intergenic | 30.0% |
| ! | AGTGATAATGTTAGTCAAGT+TGG | + | 43393:5353-5372 | MS.gene81508:intergenic | 30.0% |
| ! | ATTGAAATTATTGGTAGTCG+TGG | + | 43393:5200-5219 | MS.gene81508:intergenic | 30.0% |
| ! | ATTGCATAATCTGAAATGGT+AGG | + | 43393:5400-5419 | MS.gene81508:intergenic | 30.0% |
| ! | GAGTATTGCATAATCTGAAA+TGG | + | 43393:5404-5423 | MS.gene81508:intergenic | 30.0% |
| ! | GCTTTTTGTGAATCTGAATT+TGG | + | 43393:5568-5587 | MS.gene81508:intergenic | 30.0% |
| ! | TTGAAATTATTGGTAGTCGT+GGG | + | 43393:5199-5218 | MS.gene81508:intergenic | 30.0% |
| ! | TTTTGAATGTGAAAAGACCT+TGG | + | 43393:5828-5847 | MS.gene81508:intergenic | 30.0% |
| AAAATCCTAGATCTGGTGTT+GGG | + | 43393:5544-5563 | MS.gene81506:intergenic | 35.0% | |
| AAGGGATTTCTGATTGACTA+GGG | + | 43393:6766-6785 | MS.gene81508:intergenic | 35.0% | |
| ACAAAAAAGTGACACCAAAG+AGG | - | 43393:6526-6545 | MS.gene81508:intron | 35.0% | |
| ATAGAAAACCATCATTGAGG+TGG | + | 43393:7048-7067 | MS.gene81508:intergenic | 35.0% | |
| ATATATCACTCATTTCAGGG+AGG | - | 43393:6322-6341 | MS.gene81508:intron | 35.0% | |
| ATGAAAAACCAGCAGGTAAA+TGG | - | 43393:6585-6604 | MS.gene81508:intron | 35.0% | |
| CAAACAAGCTTTCAGAAGAT+TGG | - | 43393:5754-5773 | MS.gene81508:intron | 35.0% | |
| CCTTCAGGAAACAAACTTAT+TGG | - | 43393:6947-6966 | MS.gene81508:CDS | 35.0% | |
| GAGAGAAAAAAGTTGTTGTG+GGG | + | 43393:5294-5313 | MS.gene81508:intergenic | 35.0% | |
| GATTGATTGAGCTTTCTTAG+GGG | + | 43393:5508-5527 | MS.gene81508:intergenic | 35.0% | |
| GGAGAGAAAAAAGTTGTTGT+GGG | + | 43393:5295-5314 | MS.gene81508:intergenic | 35.0% | |
| GTAAATGGAACTCTATTGGT+GGG | - | 43393:6600-6619 | MS.gene81508:intron | 35.0% | |
| GTGATTGATTGAGCTTTCTT+AGG | + | 43393:5510-5529 | MS.gene81508:intergenic | 35.0% | |
| TAAAATCCTAGATCTGGTGT+TGG | + | 43393:5545-5564 | MS.gene81508:intergenic | 35.0% | |
| TAAGACCACAATTAGTGCAA+TGG | + | 43393:5965-5984 | MS.gene81508:intergenic | 35.0% | |
| TAAGGGATTTCTGATTGACT+AGG | + | 43393:6767-6786 | MS.gene81508:intergenic | 35.0% | |
| TATATCACTCATTTCAGGGA+GGG | - | 43393:6323-6342 | MS.gene81508:intron | 35.0% | |
| TCACCAAACATTTCAAAGCT+GGG | - | 43393:6680-6699 | MS.gene81508:CDS | 35.0% | |
| TGAAATGGTAGGATATTGAC+TGG | + | 43393:5389-5408 | MS.gene81508:intergenic | 35.0% | |
| ! | AAAGCTTGTTTGTTCTCACA+TGG | + | 43393:5746-5765 | MS.gene81508:intergenic | 35.0% |
| ! | ACTAATTGTGGTCTTAACCT+AGG | - | 43393:5969-5988 | MS.gene81508:intron | 35.0% |
| ! | CCAATAAGTTTGTTTCCTGA+AGG | + | 43393:6950-6969 | MS.gene81508:intergenic | 35.0% |
| ! | TAAGTTTGTTTCCTGAAGGA+AGG | + | 43393:6946-6965 | MS.gene81508:intergenic | 35.0% |
| ! | TGAAATTATTGGTAGTCGTG+GGG | + | 43393:5198-5217 | MS.gene81508:intergenic | 35.0% |
| !! | AGTCTTTGATGACTTGTTCT+GGG | + | 43393:6630-6649 | MS.gene81508:intergenic | 35.0% |
| !! | CACAATAAAAGTGTCCTCTT+TGG | + | 43393:6543-6562 | MS.gene81508:intergenic | 35.0% |
| !! | GATAATGTTAGTCAAGTTGG+TGG | + | 43393:5350-5369 | MS.gene81508:intergenic | 35.0% |
| !! | GGTGGGAGTATTGAAATTAT+TGG | + | 43393:5209-5228 | MS.gene81508:intergenic | 35.0% |
| !! | TAGTCTTTGATGACTTGTTC+TGG | + | 43393:6631-6650 | MS.gene81508:intergenic | 35.0% |
| !!! | ATTTACCTGCTGGTTTTTCA+TGG | + | 43393:6586-6605 | MS.gene81508:intergenic | 35.0% |
| AAGCATGACTGATATGTCAG+AGG | - | 43393:7003-7022 | MS.gene81508:CDS | 40.0% | |
| AATTACCCAACACCAGATCT+AGG | - | 43393:5536-5555 | MS.gene81508:CDS | 40.0% | |
| AATTAGTGCAATGGCAAGGA+TGG | + | 43393:5956-5975 | MS.gene81508:intergenic | 40.0% | |
| ACAAGCTTTCAGAAGATTGG+TGG | - | 43393:5757-5776 | MS.gene81508:intron | 40.0% | |
| ACTTGAATATTCCTGCTCTC+TGG | + | 43393:6740-6759 | MS.gene81508:intergenic | 40.0% | |
| AGGAAGGATTTGTGATTCAC+CGG | + | 43393:6930-6949 | MS.gene81508:intergenic | 40.0% | |
| ATAGAGTTCCATTTACCTGC+TGG | + | 43393:6596-6615 | MS.gene81508:intergenic | 40.0% | |
| ATGTGAAAAGACCTTGGATG+TGG | + | 43393:5822-5841 | MS.gene81508:intergenic | 40.0% | |
| CGACTTGAAATTTCCAACAG+CGG | + | 43393:6660-6679 | MS.gene81508:intergenic | 40.0% | |
| CGGAGAGAAAAAAGTTGTTG+TGG | + | 43393:5296-5315 | MS.gene81508:intergenic | 40.0% | |
| GAATCACAAATCCTTCCTTC+AGG | - | 43393:6932-6951 | MS.gene81508:CDS | 40.0% | |
| GACTTGAAATTTCCAACAGC+GGG | + | 43393:6659-6678 | MS.gene81508:intergenic | 40.0% | |
| GATTCAATTTCTCTAGCAGC+AGG | + | 43393:6821-6840 | MS.gene81508:intergenic | 40.0% | |
| GCAGGTAAATGGAACTCTAT+TGG | - | 43393:6596-6615 | MS.gene81508:intron | 40.0% | |
| GGTAAATGGAACTCTATTGG+TGG | - | 43393:6599-6618 | MS.gene81508:intron | 40.0% | |
| GTCACCAAACATTTCAAAGC+TGG | - | 43393:6679-6698 | MS.gene81508:CDS | 40.0% | |
| TCTGACATATCAGTCATGCT+TGG | + | 43393:7004-7023 | MS.gene81508:intergenic | 40.0% | |
| TGTGAAAAGACCTTGGATGT+GGG | + | 43393:5821-5840 | MS.gene81508:intergenic | 40.0% | |
| TTCTCTAGCAGCAGGTAAAT+GGG | + | 43393:6813-6832 | MS.gene81508:intergenic | 40.0% | |
| TTTCTCTAGCAGCAGGTAAA+TGG | + | 43393:6814-6833 | MS.gene81508:intergenic | 40.0% | |
| !! | AAGGTGTTGGTAGTGGTAAT+GGG | + | 43393:5265-5284 | MS.gene81508:intergenic | 40.0% |
| !! | AATGTTAGTCAAGTTGGTGG+TGG | + | 43393:5347-5366 | MS.gene81508:intergenic | 40.0% |
| !! | GAACCCAGCTTTGAAATGTT+TGG | + | 43393:6686-6705 | MS.gene81508:intergenic | 40.0% |
| !! | GATTTTGACCACCTCAATGA+TGG | - | 43393:7037-7056 | MS.gene81508:CDS | 40.0% |
| AAGACTAGATTACCCGCTGT+TGG | - | 43393:6644-6663 | MS.gene81508:CDS | 45.0% | |
| AGCTTTCTTAGGGGTTGTTG+TGG | + | 43393:5499-5518 | MS.gene81508:intergenic | 45.0% | |
| CACAACCATGAAAAACCAGC+AGG | - | 43393:6578-6597 | MS.gene81508:intron | 45.0% | |
| CCACAATTAGTGCAATGGCA+AGG | + | 43393:5960-5979 | MS.gene81508:intergenic | 45.0% | |
| CCTTGCCATTGCACTAATTG+TGG | - | 43393:5957-5976 | MS.gene81508:intron | 45.0% | |
| GTGAAAAGACCTTGGATGTG+GGG | + | 43393:5820-5839 | MS.gene81508:intergenic | 45.0% | |
| TAATGGGAGTCGGTCTAGTT+GGG | + | 43393:5249-5268 | MS.gene81508:intergenic | 45.0% | |
| TGATTCACCGGAGTAATCCT+GGG | + | 43393:6918-6937 | MS.gene81508:intergenic | 45.0% | |
| TGGTGGTCGTGGACAAAATA+TGG | - | 43393:5774-5793 | MS.gene81508:intron | 45.0% | |
| ! | TTTCAGAAGATTGGTGGTCG+TGG | - | 43393:5763-5782 | MS.gene81508:intron | 45.0% |
| !! | CTTTGATGACTTGTTCTGGG+AGG | + | 43393:6627-6646 | MS.gene81508:intergenic | 45.0% |
| !! | GAAGGTGTTGGTAGTGGTAA+TGG | + | 43393:5266-5285 | MS.gene81508:intergenic | 45.0% |
| !! | TTGGTAGTGGTAATGGGAGT+CGG | + | 43393:5259-5278 | MS.gene81508:intergenic | 45.0% |
| !!! | TTAAGATAAATAAATTTTAT+GGG | + | 43393:6259-6278 | MS.gene81508:intergenic | 5.0% |
| !!! | TTTAAGATAAATAAATTTTA+TGG | + | 43393:6260-6279 | MS.gene81508:intergenic | 5.0% |
| AATGGGAGTCGGTCTAGTTG+GGG | + | 43393:5248-5267 | MS.gene81508:intergenic | 50.0% | |
| ACTCATTTCAGGGAGGGAGT+TGG | - | 43393:6329-6348 | MS.gene81508:intron | 50.0% | |
| AGCAATGCCCAGGATTACTC+CGG | - | 43393:6908-6927 | MS.gene81508:CDS | 50.0% | |
| ATGTCGATCATCCAGAGAGC+AGG | - | 43393:6726-6745 | MS.gene81508:CDS | 50.0% | |
| CTAATAGGTCCAGTGGTGGT+CGG | + | 43393:5316-5335 | MS.gene81508:intergenic | 50.0% | |
| CTCATTTCAGGGAGGGAGTT+GGG | - | 43393:6330-6349 | MS.gene81508:intron | 50.0% | |
| GTGATTCACCGGAGTAATCC+TGG | + | 43393:6919-6938 | MS.gene81508:intergenic | 50.0% | |
| ! | AGTTGTTGTGGGGTTAGCGA+AGG | + | 43393:5284-5303 | MS.gene81508:intergenic | 50.0% |
| ! | GTAATGGGAGTCGGTCTAGT+TGG | + | 43393:5250-5269 | MS.gene81508:intergenic | 50.0% |
| ! | TCCTGGGCATTGCTACTCAT+TGG | + | 43393:6902-6921 | MS.gene81508:intergenic | 50.0% |
| ! | TTGGTAGTCGTGGGGTTAAC+AGG | + | 43393:5190-5209 | MS.gene81508:intergenic | 50.0% |
| ! | TTTTTCTCTCCGACCACCAC+TGG | - | 43393:5304-5323 | MS.gene81508:CDS | 50.0% |
| !! | GTTAGCGAAGGTGTTGGTAG+TGG | + | 43393:5272-5291 | MS.gene81508:intergenic | 50.0% |
| !! | TCAAGTTGGTGGTGGTGCAA+GGG | + | 43393:5339-5358 | MS.gene81508:intergenic | 50.0% |
| AGGGCTAATAGGTCCAGTGG+TGG | + | 43393:5320-5339 | MS.gene81508:intergenic | 55.0% | |
| GCAAGGGCTAATAGGTCCAG+TGG | + | 43393:5323-5342 | MS.gene81508:intergenic | 55.0% | |
| GCCAATGAGTAGCAATGCCC+AGG | - | 43393:6898-6917 | MS.gene81508:CDS | 55.0% | |
| GTGCAAGGAGTAGTGAGGGT+GGG | + | 43393:5226-5245 | MS.gene81508:intergenic | 55.0% | |
| TGGGGTGCAAGGAGTAGTGA+GGG | + | 43393:5230-5249 | MS.gene81508:intergenic | 55.0% | |
| TTGGGGTGCAAGGAGTAGTG+AGG | + | 43393:5231-5250 | MS.gene81508:intergenic | 55.0% | |
| ! | GTGGTGGTGCAAGGGCTAAT+AGG | + | 43393:5331-5350 | MS.gene81508:intergenic | 55.0% |
| ! | TGTGGGGTTAGCGAAGGTGT+TGG | + | 43393:5278-5297 | MS.gene81508:intergenic | 55.0% |
| !! | GTCAAGTTGGTGGTGGTGCA+AGG | + | 43393:5340-5359 | MS.gene81508:intergenic | 55.0% |
| GGTGCAAGGAGTAGTGAGGG+TGG | + | 43393:5227-5246 | MS.gene81508:intergenic | 60.0% | |
| GTCGGTCTAGTTGGGGTGCA+AGG | + | 43393:5241-5260 | MS.gene81508:intergenic | 60.0% | |
| ! | TTAGCGGGTCCCCACATCCA+AGG | - | 43393:5808-5827 | MS.gene81508:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43393 | gene | 5139 | 7075 | 5139 | ID=MS.gene81508 |
| 43393 | mRNA | 5139 | 7075 | 5139 | ID=MS.gene81508.t1;Parent=MS.gene81508 |
| 43393 | exon | 6606 | 7075 | 6606 | ID=MS.gene81508.t1.exon1;Parent=MS.gene81508.t1 |
| 43393 | CDS | 6606 | 7075 | 6606 | ID=cds.MS.gene81508.t1;Parent=MS.gene81508.t1 |
| 43393 | exon | 6385 | 6501 | 6385 | ID=MS.gene81508.t1.exon2;Parent=MS.gene81508.t1 |
| 43393 | CDS | 6385 | 6501 | 6385 | ID=cds.MS.gene81508.t1;Parent=MS.gene81508.t1 |
| 43393 | exon | 5139 | 5739 | 5139 | ID=MS.gene81508.t1.exon3;Parent=MS.gene81508.t1 |
| 43393 | CDS | 5139 | 5739 | 5139 | ID=cds.MS.gene81508.t1;Parent=MS.gene81508.t1 |
| Gene Sequence |
| Protein sequence |
