AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81536

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81536.t1 MTR_2g461240 97.043 372 4 2 1 370 1 367 0.0 742
MS.gene81536.t1 MTR_4g116545 72.386 373 68 8 1 370 1 341 0.0 506
MS.gene81536.t1 MTR_4g116545 73.889 360 61 7 1 357 1 330 0.0 505
MS.gene81536.t1 MTR_1g012960 81.413 269 46 2 95 359 169 437 8.23e-165 468
MS.gene81536.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 9.14e-158 448
MS.gene81536.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 1.08e-157 447
MS.gene81536.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 5.42e-157 448
MS.gene81536.t1 MTR_5g011070 67.669 266 80 2 98 357 26 291 2.37e-127 368
MS.gene81536.t1 MTR_1g017080 33.333 243 142 5 100 342 120 342 4.55e-29 116
MS.gene81536.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 8.41e-29 113
MS.gene81536.t1 MTR_2g024390 31.020 245 142 6 100 342 118 337 1.25e-28 115
MS.gene81536.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 1.42e-28 113
MS.gene81536.t1 MTR_5g033720 34.553 246 134 5 100 342 73 294 1.79e-28 113
MS.gene81536.t1 MTR_5g085860 31.174 247 130 4 103 342 50 263 2.60e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81536.t1 AT5G25220 81.949 277 43 3 97 369 157 430 1.74e-165 469
MS.gene81536.t1 AT5G11060 82.909 275 39 4 97 367 121 391 2.88e-165 468
MS.gene81536.t1 AT5G25220 84.906 265 33 3 97 357 157 418 5.10e-164 466
MS.gene81536.t1 AT4G32040 74.906 267 63 4 97 360 116 381 9.65e-143 410
MS.gene81536.t1 AT4G32040 77.419 248 53 3 97 342 116 362 5.87e-142 408
MS.gene81536.t1 AT1G62990 66.791 268 86 3 93 357 23 290 8.12e-128 369
MS.gene81536.t1 AT1G70510 33.730 252 144 6 91 342 61 289 6.59e-31 120
MS.gene81536.t1 AT4G08150 33.466 251 134 6 100 342 135 360 3.98e-30 119
MS.gene81536.t1 AT1G23380 34.909 275 136 10 96 361 82 322 4.19e-30 118
MS.gene81536.t1 AT1G70510 32.540 252 151 5 91 342 61 293 1.16e-29 116
MS.gene81536.t1 AT1G23380 34.657 277 136 11 96 361 82 324 3.12e-28 113
MS.gene81536.t1 AT1G62360 32.530 249 135 8 100 342 122 343 2.63e-23 100

Find 94 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCTTCCGTTTGGTTT+TGG 0.226014 2.2:+33607404 None:intergenic
TGAAAGTGAAAGATCTTTAA+TGG 0.234617 2.2:-33610673 MS.gene81536:CDS
TTAATTGAAGTCCTGTTTCC+TGG 0.314760 2.2:+33607499 None:intergenic
AATTAAAGCAAATAAATAAC+TGG 0.337783 2.2:-33607482 MS.gene81536:CDS
TGATGATTCTGTGTTGCTTT+CGG 0.340218 2.2:+33613483 None:intergenic
GGTTCATTAATCAAAGAAAA+AGG 0.346232 2.2:-33607461 MS.gene81536:CDS
TCATGCCATGGAAGCTGTTA+TGG 0.355360 2.2:-33610974 MS.gene81536:CDS
CGCTGATCCGGCACCGGCTC+CGG 0.366320 2.2:+33613633 None:intergenic
GCTAGGTTGGTCCAGGAAAC+AGG 0.387799 2.2:-33607510 MS.gene81536:CDS
TTTCGGCCCGGTTCCGATCC+CGG 0.391273 2.2:+33613500 None:intergenic
GTGCCGGATCAGCGCCGAAT+TGG 0.392791 2.2:-33613624 MS.gene81536:CDS
TTCGGCCCGGTTCCGATCCC+GGG 0.394283 2.2:+33613501 None:intergenic
AGAAAACCCGGGATCGGAAC+CGG 0.397626 2.2:-33613507 MS.gene81536:CDS
TTATATGAAGGAAGCCTTGA+TGG 0.403625 2.2:-33610732 MS.gene81536:CDS
GGAAGCTGTTATGGCTTGTT+GGG 0.411048 2.2:-33610965 MS.gene81536:CDS
TGGAAGCTGTTATGGCTTGT+TGG 0.413199 2.2:-33610966 MS.gene81536:CDS
AACTGTTGCTCTTCACTGAA+TGG 0.413895 2.2:+33613694 None:intergenic
TTAAAACTTACAGTTGGATA+AGG 0.418650 2.2:+33609214 None:intergenic
GAGCCAATTCGGCGCTGATC+CGG 0.419648 2.2:+33613621 None:intergenic
AAAGGAGCTTGATCAATTCA+TGG 0.424580 2.2:-33613272 MS.gene81536:intron
TAAAACTCACCTCTTCCGTT+TGG 0.425758 2.2:+33607398 None:intergenic
GTTGAAGCACGAGCTTAAAC+AGG 0.438830 2.2:-33610634 MS.gene81536:intron
GGTGGCAATCACACTCGAAA+TGG 0.440017 2.2:-33609237 MS.gene81536:CDS
CCGGCACCGGCTCCGGTGAA+TGG 0.444652 2.2:+33613640 None:intergenic
ACAGCGTTGTTGAGCCAATT+CGG 0.449648 2.2:+33613610 None:intergenic
ATTGCCACCAAGCTTTCAAA+AGG 0.450033 2.2:+33609251 None:intergenic
CAATACAAAGCAGACATACT+TGG 0.452763 2.2:-33613448 MS.gene81536:CDS
AAGTACTCTTCACTTGCTAA+TGG 0.452773 2.2:-33613307 MS.gene81536:CDS
AAAAGGGAGGTTGTGTCACC+GGG 0.455869 2.2:+33609268 None:intergenic
TGTTATGGCTTGTTGGGAGC+TGG 0.458320 2.2:-33610959 MS.gene81536:CDS
CAAAAGGGAGGTTGTGTCAC+CGG 0.459004 2.2:+33609267 None:intergenic
GTTCTTTAAAAGCACAGAGC+AGG 0.490015 2.2:+33611019 None:intergenic
TTCACTTGCTAATGGTGTTG+TGG 0.493741 2.2:-33613299 MS.gene81536:CDS
TTTAATGGAACGTGTGAGGC+AGG 0.496599 2.2:-33610658 MS.gene81536:CDS
GTATCTCCTGGTGAAGGGAG+TGG 0.497119 2.2:-33610804 MS.gene81536:CDS
GGAAGAAGACAAAGCTAGGT+TGG 0.501618 2.2:-33607523 MS.gene81536:CDS
TTTAGGAAGAAGACAAAGCT+AGG 0.501787 2.2:-33607527 MS.gene81536:intron
ATTCGGCGCTGATCCGGCAC+CGG 0.502759 2.2:+33613627 None:intergenic
GAAAACCCGGGATCGGAACC+GGG 0.504035 2.2:-33613506 MS.gene81536:CDS
TCACAAAACGAGGACGTAAG+AGG 0.506259 2.2:-33613544 MS.gene81536:CDS
AGTTTGCATTGCTCTCTGCT+TGG 0.514653 2.2:+33610754 None:intergenic
ATTCTACGGAAGAGAAGAGC+AGG 0.516568 2.2:-33609298 MS.gene81536:CDS
CTATTCAATAGTAGTGGCGC+AGG 0.525611 2.2:-33607281 MS.gene81536:intron
CTACTACCATTCACCGGAGC+CGG 0.525885 2.2:-33613646 MS.gene81536:CDS
AGCAATGCAAACTTATATGA+AGG 0.526547 2.2:-33610744 MS.gene81536:CDS
AAAGATCTTTCACTTTCAGT+AGG 0.529421 2.2:+33610678 None:intergenic
GGTGGTGATAGTCTCAGCTT+TGG 0.534812 2.2:-33610711 MS.gene81536:CDS
ATCCGCGGAAGCTGATCGAC+GGG 0.535334 2.2:+33613367 None:intergenic
AGACAAAGCTAGGTTGGTCC+AGG 0.536981 2.2:-33607517 MS.gene81536:CDS
CCATTCACCGGAGCCGGTGC+CGG 0.539777 2.2:-33613640 MS.gene81536:CDS
CAGTCTCTACAAAGCTTGAC+CGG 0.543218 2.2:-33610934 MS.gene81536:intron
GTTGCTCCACTCCCTTCACC+AGG 0.545323 2.2:+33610798 None:intergenic
GTGATGTATCTGGTTGTAAG+TGG 0.546109 2.2:+33613563 None:intergenic
ACAAGCCATAACAGCTTCCA+TGG 0.548095 2.2:+33610969 None:intergenic
GATAGAAGCTGATCGTAAAG+AGG 0.552473 2.2:+33613421 None:intergenic
GATCCGCGGAAGCTGATCGA+CGG 0.553108 2.2:+33613366 None:intergenic
CCACTGGCTCCAAAACCAAA+CGG 0.555258 2.2:-33607413 MS.gene81536:CDS
CGTAAGAGGTATGAACATGA+TGG 0.558929 2.2:-33613530 MS.gene81536:CDS
ATTCTGTGTTGCTTTCGGCC+CGG 0.559067 2.2:+33613488 None:intergenic
TCACTTTCAGTAGGAACAAG+AGG 0.559140 2.2:+33610687 None:intergenic
TGAAGCTGTGCGTCGATCCG+CGG 0.565484 2.2:+33613352 None:intergenic
TGCCGAATCACATGAAACTC+TGG 0.568006 2.2:+33607246 None:intergenic
CCACCAAGCTTTCAAAAGGG+AGG 0.569465 2.2:+33609255 None:intergenic
AGAAGAGCAGGAAAGCTCCC+CGG 0.570400 2.2:-33609286 MS.gene81536:CDS
TAATGGTGTTGTGGATGAAA+AGG 0.570805 2.2:-33613290 MS.gene81536:CDS
ACAGGTGTATCTCCTGGTGA+AGG 0.571753 2.2:-33610810 MS.gene81536:intron
CGCCCGTCGATCAGCTTCCG+CGG 0.571878 2.2:-33613369 MS.gene81536:CDS
ACTAATCCTTCGTCTTCCAC+TGG 0.572883 2.2:-33607429 MS.gene81536:CDS
GCTCCAAAACCAAACGGAAG+AGG 0.573313 2.2:-33607407 MS.gene81536:intron
TGAACATGATGGAGAAAACC+CGG 0.573901 2.2:-33613519 MS.gene81536:CDS
GCTTCAGCAGTCGCAGCGCG+TGG 0.581446 2.2:-33613335 MS.gene81536:CDS
AATTGATTTCATGAGAGAGA+TGG 0.582629 2.2:+33613722 None:intergenic
ACATGTCCGTGTTCATGCCA+TGG 0.585181 2.2:-33610986 MS.gene81536:CDS
TGATGGAGAAAACCCGGGAT+CGG 0.585256 2.2:-33613513 MS.gene81536:CDS
GGGTTACAAGAGTAAGATTG+TGG 0.594567 2.2:-33609335 MS.gene81536:CDS
GGAGAAAATTCTGCTGCCGT+AGG 0.594774 2.2:+33613584 None:intergenic
ACATAAGAGAAGAAATTCTA+CGG 0.596585 2.2:-33609312 MS.gene81536:CDS
TGAGACTATCACCACCATCA+AGG 0.601612 2.2:+33610718 None:intergenic
GCATGAACAGGTGTATCTCC+TGG 0.604904 2.2:-33610816 MS.gene81536:intron
CAGGTGTATCTCCTGGTGAA+GGG 0.604940 2.2:-33610809 MS.gene81536:CDS
TCAGCAGTCGCAGCGCGTGG+TGG 0.605137 2.2:-33613332 MS.gene81536:CDS
TTGCCACCAAGCTTTCAAAA+GGG 0.611238 2.2:+33609252 None:intergenic
CAAAGACTACTACCATTCAC+CGG 0.619446 2.2:-33613652 MS.gene81536:CDS
CAGCTTCCATGGCATGAACA+CGG 0.631221 2.2:+33610980 None:intergenic
ATAGAAGCTGATCGTAAAGA+GGG 0.632926 2.2:+33613422 None:intergenic
GATCTTTAATGGAACGTGTG+AGG 0.637290 2.2:-33610662 MS.gene81536:CDS
TTGGAGCCAGTGGAAGACGA+AGG 0.640820 2.2:+33607423 None:intergenic
AGGGAGTGGAGCAACAATGT+CGG 0.655814 2.2:-33610790 MS.gene81536:CDS
TCAACAACGCTGTAAACCTA+CGG 0.675133 2.2:-33613600 MS.gene81536:CDS
ACCAGATACATCACAAAACG+AGG 0.688090 2.2:-33613554 MS.gene81536:CDS
AAGCAACACAGAATCATCAG+AGG 0.697069 2.2:-33613479 MS.gene81536:CDS
GAACATGATGGAGAAAACCC+GGG 0.707928 2.2:-33613518 MS.gene81536:CDS
TATGAAGGAAGCCTTGATGG+TGG 0.736950 2.2:-33610729 MS.gene81536:CDS
AAAGGGAGGTTGTGTCACCG+GGG 0.760034 2.2:+33609269 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTAATAAAAAT+TGG - chr2.2:33611839-33611858 MS.gene81536:intron 0.0%
!! AAAATAAAAAAAAATAAATA+AGG + chr2.2:33608057-33608076 None:intergenic 0.0%
!! AAAATAAAATAAAAAATATT+TGG - chr2.2:33608644-33608663 MS.gene81536:intron 0.0%
!! ATTAAAAATTAATAAAAAAT+TGG - chr2.2:33610714-33610733 MS.gene81536:CDS 0.0%
!! AATCACATAATTATTTAAAA+TGG - chr2.2:33611590-33611609 MS.gene81536:intron 10.0%
!! GAAAAATAATTGAAAAAATA+CGG - chr2.2:33610855-33610874 MS.gene81536:intron 10.0%
!! GATATATAATTAAAAATAGA+TGG + chr2.2:33612556-33612575 None:intergenic 10.0%
!! TAAATAATAAAATTAGGTTT+GGG + chr2.2:33607759-33607778 None:intergenic 10.0%
!! TCTAAAAAAAATTAAAATTC+TGG + chr2.2:33611427-33611446 None:intergenic 10.0%
!! TGATGTTAAATAATAAAATT+AGG + chr2.2:33607765-33607784 None:intergenic 10.0%
!! TTAAATAATAAAATTAGGTT+TGG + chr2.2:33607760-33607779 None:intergenic 10.0%
!! TTAATGAAAAATAAAAATTC+TGG + chr2.2:33611383-33611402 None:intergenic 10.0%
!! TTTATTGTTGAAATATAAAT+TGG + chr2.2:33609581-33609600 None:intergenic 10.0%
!!! AAAAAAGTCTTTTTTTTTTA+GGG - chr2.2:33612272-33612291 MS.gene81536:intron 10.0%
!!! TATGAATTATTTAAAACTTT+GGG + chr2.2:33612219-33612238 None:intergenic 10.0%
!!! TATGGATTATTTTAAAAAAA+AGG - chr2.2:33612009-33612028 MS.gene81536:intron 10.0%
!!! TCAAAATATACTAATTTTTA+AGG + chr2.2:33611949-33611968 None:intergenic 10.0%
!!! TTATGAATTATTTAAAACTT+TGG + chr2.2:33612220-33612239 None:intergenic 10.0%
!!! TTTTTTTACCTTAAATATAA+GGG - chr2.2:33612927-33612946 MS.gene81536:intron 10.0%
!! AAAAGCTTAATCTTAAAATT+TGG + chr2.2:33609457-33609476 None:intergenic 15.0%
!! AAAATAAAACATCTCTAATA+TGG - chr2.2:33609611-33609630 MS.gene81536:intron 15.0%
!! AATTAAAGCAAATAAATAAC+TGG - chr2.2:33613510-33613529 MS.gene81536:CDS 15.0%
!! AGAAAAAAATTAAACATTAG+AGG + chr2.2:33609554-33609573 None:intergenic 15.0%
!! ATTGAAAAAATTGAAAATTC+TGG - chr2.2:33611014-33611033 MS.gene81536:CDS 15.0%
!! TAATCTAAATAGATCAATAA+TGG + chr2.2:33612070-33612089 None:intergenic 15.0%
!! TATTAAGTGAGTTTATAATT+GGG - chr2.2:33609380-33609399 MS.gene81536:intron 15.0%
!! TCAAAAATAGAAAGAAATAT+AGG - chr2.2:33612120-33612139 MS.gene81536:intron 15.0%
!! TCATAAAGTGATTTATAAAT+TGG - chr2.2:33613109-33613128 MS.gene81536:intron 15.0%
!! TTAAAAATTTCGAAAATATC+TGG - chr2.2:33610965-33610984 MS.gene81536:CDS 15.0%
!! TTAACATTCATATGTTATAT+TGG + chr2.2:33609806-33609825 None:intergenic 15.0%
!! TTTCAACAATAAATTGTTAA+TGG - chr2.2:33609588-33609607 MS.gene81536:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG + chr2.2:33610501-33610520 None:intergenic 15.0%
!!! AATAAAAAATATTTGGTGTT+CGG - chr2.2:33608651-33608670 MS.gene81536:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr2.2:33611166-33611185 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+TGG + chr2.2:33611166-33611185 None:intergenic 15.0%
!!! CAAAAAAGTCTTTTTTTTTT+AGG - chr2.2:33612271-33612290 MS.gene81536:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG + chr2.2:33610502-33610521 None:intergenic 15.0%
!!! GTTTTTTTACCTTAAATATA+AGG - chr2.2:33612926-33612945 MS.gene81536:intron 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG - chr2.2:33610502-33610521 MS.gene81536:intron 15.0%
!!! TAAAATCACTCATAATTTTT+TGG + chr2.2:33613001-33613020 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG + chr2.2:33610503-33610522 None:intergenic 15.0%
!!! TTAATGATATTTTGCATTAA+TGG - chr2.2:33608802-33608821 MS.gene81536:intron 15.0%
!!! TTTTTTACCTTAAATATAAG+GGG - chr2.2:33612928-33612947 MS.gene81536:intron 15.0%
!! AAATTAAATAATCTCGTTCA+AGG - chr2.2:33612782-33612801 MS.gene81536:intron 20.0%
!! ACAAAAAATTATGTGTATCT+CGG + chr2.2:33611115-33611134 None:intergenic 20.0%
!! ACGATTGTAATACAAATATA+AGG + chr2.2:33609668-33609687 None:intergenic 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG - chr2.2:33610980-33610999 MS.gene81536:CDS 20.0%
!! ATCAAAATATATACATCATC+CGG - chr2.2:33608997-33609016 MS.gene81536:intron 20.0%
!! ATGAATAGAATAAATTTGCA+TGG + chr2.2:33607805-33607824 None:intergenic 20.0%
!! CAAACAAAAATTTATGACAT+AGG - chr2.2:33608874-33608893 MS.gene81536:intron 20.0%
!! CATTCAATTAATGTTGTATA+TGG + chr2.2:33609093-33609112 None:intergenic 20.0%
!! GTATTAAGTGAGTTTATAAT+TGG - chr2.2:33609379-33609398 MS.gene81536:intron 20.0%
!! TAGTTAATGTCACAATATAT+GGG + chr2.2:33608680-33608699 None:intergenic 20.0%
!! TGAAAAATTGAAAACAATTC+TGG - chr2.2:33610758-33610777 MS.gene81536:CDS 20.0%
!! TTAATCAAAGAAAAAGGAAT+TGG - chr2.2:33613537-33613556 MS.gene81536:CDS 20.0%
!! TTAGTTAATGTCACAATATA+TGG + chr2.2:33608681-33608700 None:intergenic 20.0%
!! TTCAAATGTAAATAAAAGAG+AGG + chr2.2:33609733-33609752 None:intergenic 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG + chr2.2:33610500-33610519 None:intergenic 20.0%
!!! AAATAGATCAATAATGGATA+AGG + chr2.2:33612064-33612083 None:intergenic 20.0%
!!! AATAGATCAATAATGGATAA+GGG + chr2.2:33612063-33612082 None:intergenic 20.0%
!!! AATTTTCATTATGTGTATTC+CGG + chr2.2:33611141-33611160 None:intergenic 20.0%
!!! ACAAAATAAGACTTTTTTGT+TGG + chr2.2:33612300-33612319 None:intergenic 20.0%
!!! ACACATAATTTTTTGTAAAC+CGG - chr2.2:33611119-33611138 MS.gene81536:intron 20.0%
!!! ATATAGGAGTATTAATAAAC+TGG - chr2.2:33612136-33612155 MS.gene81536:intron 20.0%
!!! ATCAAAATTTTGTCTAGATT+TGG - chr2.2:33608019-33608038 MS.gene81536:intron 20.0%
!!! ATTGAAAATTCTGGAAAATA+CGG - chr2.2:33611023-33611042 MS.gene81536:CDS 20.0%
!!! ATTTTCATTCGTATTTTTTC+TGG - chr2.2:33611068-33611087 MS.gene81536:intron 20.0%
!!! ATTTTGCTTATAATAATGAC+CGG - chr2.2:33609128-33609147 MS.gene81536:intron 20.0%
!!! CTTACAAATTAGTTTTGTAT+GGG - chr2.2:33609415-33609434 MS.gene81536:intron 20.0%
!!! GGATTATTTTAAAAAAAAGG+TGG - chr2.2:33612012-33612031 MS.gene81536:intron 20.0%
!!! TAATGTTTTTTCAATATGCA+GGG - chr2.2:33611637-33611656 MS.gene81536:intron 20.0%
!!! TACCTTTATTTGAATTTTCT+AGG + chr2.2:33612763-33612782 None:intergenic 20.0%
!!! TCAAAATTTTGTCTAGATTT+GGG - chr2.2:33608020-33608039 MS.gene81536:intron 20.0%
!!! TCTTACAAATTAGTTTTGTA+TGG - chr2.2:33609414-33609433 MS.gene81536:intron 20.0%
!!! TGATTTTTTTTCCTCTAATA+AGG - chr2.2:33608245-33608264 MS.gene81536:intron 20.0%
!!! TTAATGTTTTTTCAATATGC+AGG - chr2.2:33611636-33611655 MS.gene81536:intron 20.0%
!!! TTGTGACATTAACTAATTTT+TGG - chr2.2:33608685-33608704 MS.gene81536:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr2.2:33611165-33611184 None:intergenic 20.0%
!!! TTTTCATTCGTATTTTTTCT+GGG - chr2.2:33611069-33611088 MS.gene81536:intron 20.0%
!!! TTTTTACTATTCAATAGTAG+TGG - chr2.2:33613705-33613724 MS.gene81536:CDS 20.0%
! AAAATTTGAAAACGGAATTC+TGG - chr2.2:33610988-33611007 MS.gene81536:CDS 25.0%
! AATGTTCGAAGAAAAAGTAA+AGG + chr2.2:33608347-33608366 None:intergenic 25.0%
! ACAAAATCCCCTTATATTTA+AGG + chr2.2:33612938-33612957 None:intergenic 25.0%
! ACATAAGAGAAGAAATTCTA+CGG - chr2.2:33611680-33611699 MS.gene81536:intron 25.0%
! ACATTCATATGTTATATTGG+AGG + chr2.2:33609803-33609822 None:intergenic 25.0%
! AGAAAAAAGAGTCCATTATT+AGG + chr2.2:33613624-33613643 None:intergenic 25.0%
! ATACAAATATAAGGAAATGC+AGG + chr2.2:33609659-33609678 None:intergenic 25.0%
! ATGATCACACTAAATATGAT+AGG + chr2.2:33612355-33612374 None:intergenic 25.0%
! ATGTTCGAAGAAAAAGTAAA+GGG + chr2.2:33608346-33608365 None:intergenic 25.0%
! CATCAAATTAAGATTCAAGT+CGG + chr2.2:33608436-33608455 None:intergenic 25.0%
! CATTCATATGTTATATTGGA+GGG + chr2.2:33609802-33609821 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2.2:33609054-33609073 MS.gene81536:intron 25.0%
! CATTGAAAATTAAGTAGTGA+AGG + chr2.2:33612711-33612730 None:intergenic 25.0%
! GAAAAAAGAGTCCATTATTA+GGG + chr2.2:33613623-33613642 None:intergenic 25.0%
! GACCTAGAAAATTCAAATAA+AGG - chr2.2:33612758-33612777 MS.gene81536:intron 25.0%
! GATAGTTGAAACTTAATTAC+CGG + chr2.2:33610080-33610099 None:intergenic 25.0%
! GGAAAAAATGCAAAAAGTTA+GGG - chr2.2:33612813-33612832 MS.gene81536:intron 25.0%
! GGTTCATTAATCAAAGAAAA+AGG - chr2.2:33613531-33613550 MS.gene81536:CDS 25.0%
! GTTATTGCACATAGTTAATT+AGG + chr2.2:33607929-33607948 None:intergenic 25.0%
! TACACATAATGAAAATTTCC+CGG - chr2.2:33611144-33611163 MS.gene81536:intron 25.0%
! TGAAAGTGAAAGATCTTTAA+TGG - chr2.2:33610319-33610338 MS.gene81536:intron 25.0%
! TGATCACACTAAATATGATA+GGG + chr2.2:33612354-33612373 None:intergenic 25.0%
! TGGAAAAAATGCAAAAAGTT+AGG - chr2.2:33612812-33612831 MS.gene81536:intron 25.0%
! TTAAAACTTACAGTTGGATA+AGG + chr2.2:33611781-33611800 None:intergenic 25.0%
! TTGATCTTAAAACTTACAGT+TGG + chr2.2:33611787-33611806 None:intergenic 25.0%
! TTGATTAAAGTAGTTGTAGT+GGG + chr2.2:33607837-33607856 None:intergenic 25.0%
! TTTAACATGATTAGCATTCA+TGG + chr2.2:33613431-33613450 None:intergenic 25.0%
!! AACCATGGTGTATATATTTT+AGG - chr2.2:33610426-33610445 MS.gene81536:intron 25.0%
!! ACTTTAAAAAACAGTAAACG+AGG - chr2.2:33608134-33608153 MS.gene81536:intron 25.0%
!! TAAGCAAAACTTTGCATTTT+AGG - chr2.2:33609029-33609048 MS.gene81536:intron 25.0%
!! TTTAGGCTTAATTACACTTT+TGG - chr2.2:33610443-33610462 MS.gene81536:intron 25.0%
!!! AAGACTTTTTTGTTGTTAGA+AGG + chr2.2:33612263-33612282 None:intergenic 25.0%
!!! AAGTGAACTATTTTTCTCAA+AGG - chr2.2:33612460-33612479 MS.gene81536:intron 25.0%
!!! AGTGAACTATTTTTCTCAAA+GGG - chr2.2:33612461-33612480 MS.gene81536:intron 25.0%
!!! ATTTTAACAAACTTCAAGGA+AGG + chr2.2:33612651-33612670 None:intergenic 25.0%
!!! GAGTTTTATTTCCCTAATAA+TGG - chr2.2:33613609-33613628 MS.gene81536:CDS 25.0%
!!! GTTGATTTAACTTTTAGTGT+TGG - chr2.2:33609869-33609888 MS.gene81536:intron 25.0%
!!! TGACATTTTAACAAACTTCA+AGG + chr2.2:33612655-33612674 None:intergenic 25.0%
!!! TTTCTTTAAAATACCCTCAT+GGG + chr2.2:33612432-33612451 None:intergenic 25.0%
!!! TTTTCTTTAAAATACCCTCA+TGG + chr2.2:33612433-33612452 None:intergenic 25.0%
AAAGATCTTTCACTTTCAGT+AGG + chr2.2:33610317-33610336 None:intergenic 30.0%
AAAGTCTAATCAACAAACTC+CGG + chr2.2:33608119-33608138 None:intergenic 30.0%
AAATTTATGACATAGGACTG+TGG - chr2.2:33608881-33608900 MS.gene81536:intron 30.0%
AAGTTAACACCGTTTAAGTA+CGG + chr2.2:33612892-33612911 None:intergenic 30.0%
AATTACATTTACCTCCTTTG+AGG + chr2.2:33612975-33612994 None:intergenic 30.0%
AATTGATCCTTGCAACAAAT+GGG + chr2.2:33608399-33608418 None:intergenic 30.0%
AATTTATGACATAGGACTGT+GGG - chr2.2:33608882-33608901 MS.gene81536:intron 30.0%
AGATGAATTCTTAGTTAGCT+AGG + chr2.2:33613371-33613390 None:intergenic 30.0%
AGCAATGCAAACTTATATGA+AGG - chr2.2:33610248-33610267 MS.gene81536:intron 30.0%
AGCCTAAAATATATACACCA+TGG + chr2.2:33610431-33610450 None:intergenic 30.0%
ATACGATATGACAATTGTCA+CGG + chr2.2:33611813-33611832 None:intergenic 30.0%
ATATACCCGCAAATTATTGA+TGG - chr2.2:33608516-33608535 MS.gene81536:intron 30.0%
ATTTACTCCATAGTTGTCAT+AGG + chr2.2:33611872-33611891 None:intergenic 30.0%
CAACAACATGAAAGAATCAT+AGG + chr2.2:33609236-33609255 None:intergenic 30.0%
CAACTACCATCAATAATTTG+CGG + chr2.2:33608525-33608544 None:intergenic 30.0%
CTTCTTGATCATTACTAGTA+CGG + chr2.2:33613294-33613313 None:intergenic 30.0%
GTAGATACGTAATAGATTGA+CGG + chr2.2:33609212-33609231 None:intergenic 30.0%
GTTGATTAAAGTAGTTGTAG+TGG + chr2.2:33607838-33607857 None:intergenic 30.0%
GTTGTTTAGTTAAACCTCAA+AGG - chr2.2:33612958-33612977 MS.gene81536:intron 30.0%
TATTCGAGAGAAAATTACGA+GGG + chr2.2:33613214-33613233 None:intergenic 30.0%
TGATTAAAGTAGTTGTAGTG+GGG + chr2.2:33607836-33607855 None:intergenic 30.0%
TTAGTATATATGTCGAGCTT+AGG + chr2.2:33611246-33611265 None:intergenic 30.0%
TTATTCGAGAGAAAATTACG+AGG + chr2.2:33613215-33613234 None:intergenic 30.0%
TTTGATCTTTCCTGAATTTC+CGG - chr2.2:33608097-33608116 MS.gene81536:intron 30.0%
! AAACTCGTGAATGTACTTTT+AGG - chr2.2:33613448-33613467 MS.gene81536:CDS 30.0%
! AACTACCATCAATAATTTGC+GGG + chr2.2:33608524-33608543 None:intergenic 30.0%
! AATTGATTTCATGAGAGAGA+TGG + chr2.2:33607273-33607292 None:intergenic 30.0%
! ATTGACGGATGGAAAATATA+TGG + chr2.2:33609197-33609216 None:intergenic 30.0%
! CATCTAAGATGAAGATCTAA+AGG + chr2.2:33608716-33608735 None:intergenic 30.0%
! CGACTTGAATCTTAATTTGA+TGG - chr2.2:33608434-33608453 MS.gene81536:intron 30.0%
! CTTTTGTTGAATGAAATCCT+AGG - chr2.2:33612498-33612517 MS.gene81536:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr2.2:33609019-33609038 None:intergenic 30.0%
! TGGCTTTTTATCTTTGCAAA+TGG + chr2.2:33610144-33610163 None:intergenic 30.0%
! TTTTTCTCCTATGACAACTA+TGG - chr2.2:33611862-33611881 MS.gene81536:intron 30.0%
!! TAATTAGTTTGTCCTGACTT+AGG - chr2.2:33608299-33608318 MS.gene81536:intron 30.0%
!! TCAATAATGGATAAGGGTAT+TGG + chr2.2:33612057-33612076 None:intergenic 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG - chr2.2:33610534-33610553 MS.gene81536:intron 30.0%
!! TTCATTTTCAACGTTGATTG+AGG - chr2.2:33608574-33608593 MS.gene81536:intron 30.0%
!!! TTTTGATAGTGTGAATCAGA+AGG + chr2.2:33609279-33609298 None:intergenic 30.0%
AAAAAACAGTAAACGAGGAG+AGG - chr2.2:33608139-33608158 MS.gene81536:intron 35.0%
AAACCAGTAACGTATACGAA+GGG + chr2.2:33608491-33608510 None:intergenic 35.0%
AAAGGAGCTTGATCAATTCA+TGG - chr2.2:33607720-33607739 MS.gene81536:intron 35.0%
AATGCAGGAAACTTGAATGT+AGG + chr2.2:33609644-33609663 None:intergenic 35.0%
AGTTAGCTAGGCACATTAAT+TGG + chr2.2:33613359-33613378 None:intergenic 35.0%
AGTTTCGACATATACTTCCT+AGG + chr2.2:33612518-33612537 None:intergenic 35.0%
ATACGTAATAGATTGACGGA+TGG + chr2.2:33609208-33609227 None:intergenic 35.0%
ATAGAAGCTGATCGTAAAGA+GGG + chr2.2:33607573-33607592 None:intergenic 35.0%
ATGATTAGCATTCATGGAAG+AGG + chr2.2:33613425-33613444 None:intergenic 35.0%
ATGCAGGAAACTTGAATGTA+GGG + chr2.2:33609643-33609662 None:intergenic 35.0%
ATGCTTATGACTTGACACAT+TGG + chr2.2:33613249-33613268 None:intergenic 35.0%
ATTGATCCTTGCAACAAATG+GGG + chr2.2:33608398-33608417 None:intergenic 35.0%
ATTTATGACATAGGACTGTG+GGG - chr2.2:33608883-33608902 MS.gene81536:intron 35.0%
CAACCAAAAGTGAACTTAAG+GGG + chr2.2:33610528-33610547 None:intergenic 35.0%
CAATACAAAGCAGACATACT+TGG - chr2.2:33607544-33607563 MS.gene81536:intron 35.0%
CAATTGATCCTTGCAACAAA+TGG + chr2.2:33608400-33608419 None:intergenic 35.0%
CACAACTCTCAAAACTTAAG+AGG - chr2.2:33612836-33612855 MS.gene81536:intron 35.0%
CACTAAAATTCAGTATCACG+AGG + chr2.2:33608928-33608947 None:intergenic 35.0%
CGTTATTAATTCACCAGTCA+TGG + chr2.2:33613321-33613340 None:intergenic 35.0%
GATAACGTTATTACACCTTC+CGG + chr2.2:33609150-33609169 None:intergenic 35.0%
GCAACCAAAAGTGAACTTAA+GGG + chr2.2:33610529-33610548 None:intergenic 35.0%
GTGTCCCATTAGAAAATAGA+GGG + chr2.2:33612685-33612704 None:intergenic 35.0%
GTTTAGTTAAACCTCAAAGG+AGG - chr2.2:33612961-33612980 MS.gene81536:intron 35.0%
TGAACTGAATGTAGAACCTA+CGG - chr2.2:33609749-33609768 MS.gene81536:intron 35.0%
TGCAACCAAAAGTGAACTTA+AGG + chr2.2:33610530-33610549 None:intergenic 35.0%
TGCTTATAATAATGACCGGA+AGG - chr2.2:33609132-33609151 MS.gene81536:intron 35.0%
TGCTTATGACTTGACACATT+GGG + chr2.2:33613248-33613267 None:intergenic 35.0%
TGTCCCATTAGAAAATAGAG+GGG + chr2.2:33612684-33612703 None:intergenic 35.0%
TGTGTCCCATTAGAAAATAG+AGG + chr2.2:33612686-33612705 None:intergenic 35.0%
TTAATTGAAGTCCTGTTTCC+TGG + chr2.2:33613496-33613515 None:intergenic 35.0%
TTATATGAAGGAAGCCTTGA+TGG - chr2.2:33610260-33610279 MS.gene81536:intron 35.0%
TTATCTTTGCAAATGGTACG+TGG + chr2.2:33610137-33610156 None:intergenic 35.0%
TTCATGTTGTTGCTGTAAGT+GGG - chr2.2:33609244-33609263 MS.gene81536:CDS 35.0%
TTTAGGAAGAAGACAAAGCT+AGG - chr2.2:33613465-33613484 MS.gene81536:CDS 35.0%
TTTCATGTTGTTGCTGTAAG+TGG - chr2.2:33609243-33609262 MS.gene81536:CDS 35.0%
TTTCTTGATACGCATGAAAG+TGG + chr2.2:33612585-33612604 None:intergenic 35.0%
! AAGTACTCTTCACTTGCTAA+TGG - chr2.2:33607685-33607704 MS.gene81536:intron 35.0%
! ACACCCCTCTATTTTCTAAT+GGG - chr2.2:33612678-33612697 MS.gene81536:intron 35.0%
! ACTTAAACGGTGTTAACTTG+AGG - chr2.2:33612893-33612912 MS.gene81536:intron 35.0%
! ATCGCAACTTTTGGATACTT+AGG + chr2.2:33610472-33610491 None:intergenic 35.0%
! CGCAAATTATTGATGGTAGT+TGG - chr2.2:33608523-33608542 MS.gene81536:intron 35.0%
! CTTAAACGGTGTTAACTTGA+GGG - chr2.2:33612894-33612913 MS.gene81536:intron 35.0%
! GACTCTCTTTTCCTTATTAG+AGG + chr2.2:33608259-33608278 None:intergenic 35.0%
! TCGCAACTTTTGGATACTTA+GGG + chr2.2:33610471-33610490 None:intergenic 35.0%
! TTAAACGGTGTTAACTTGAG+GGG - chr2.2:33612895-33612914 MS.gene81536:intron 35.0%
! TTTATTCCCCATTTGTTGCA+AGG - chr2.2:33608389-33608408 MS.gene81536:intron 35.0%
!! ATAATGGATAAGGGTATTGG+AGG + chr2.2:33612054-33612073 None:intergenic 35.0%
!! TAATGGTGTTGTGGATGAAA+AGG - chr2.2:33607702-33607721 MS.gene81536:intron 35.0%
!! TATTTTTCTCAAAGGGTGTG+AGG - chr2.2:33612468-33612487 MS.gene81536:intron 35.0%
!! TGATGATTCTGTGTTGCTTT+CGG + chr2.2:33607512-33607531 None:intergenic 35.0%
!!! ATCTCGTTCAAGGAGTTTTT+TGG - chr2.2:33612792-33612811 MS.gene81536:intron 35.0%
AACCAGTAACGTATACGAAG+GGG + chr2.2:33608490-33608509 None:intergenic 40.0%
AACTGTTGCTCTTCACTGAA+TGG + chr2.2:33607301-33607320 None:intergenic 40.0%
AAGCAACACAGAATCATCAG+AGG - chr2.2:33607513-33607532 MS.gene81536:CDS 40.0%
AATAATGCCCAGCAACATCA+AGG + chr2.2:33613400-33613419 None:intergenic 40.0%
AATGCAATGCAATGCAACCA+TGG - chr2.2:33610411-33610430 MS.gene81536:intron 40.0%
AATGGAACAAGTTCCCATGA+GGG - chr2.2:33612416-33612435 MS.gene81536:intron 40.0%
ACCAGATACATCACAAAACG+AGG - chr2.2:33607438-33607457 MS.gene81536:CDS 40.0%
ACTGTGGGGTAATACTTCAA+GGG - chr2.2:33608897-33608916 MS.gene81536:intron 40.0%
AGAACCTACGGTTGAAATCA+AGG - chr2.2:33609761-33609780 MS.gene81536:intron 40.0%
AGTAAACGAGGAGAGGATAA+TGG - chr2.2:33608146-33608165 MS.gene81536:intron 40.0%
ATCAAGAAGACAACCATGAC+TGG - chr2.2:33613305-33613324 MS.gene81536:CDS 40.0%
ATTGCCACCAAGCTTTCAAA+AGG + chr2.2:33611744-33611763 None:intergenic 40.0%
CAAACCAGTAACGTATACGA+AGG + chr2.2:33608492-33608511 None:intergenic 40.0%
CAAAGACTACTACCATTCAC+CGG - chr2.2:33607340-33607359 MS.gene81536:intron 40.0%
GAACCTACGGTTGAAATCAA+GGG - chr2.2:33609762-33609781 MS.gene81536:intron 40.0%
GATAGAAGCTGATCGTAAAG+AGG + chr2.2:33607574-33607593 None:intergenic 40.0%
GATCTTTAATGGAACGTGTG+AGG - chr2.2:33610330-33610349 MS.gene81536:intron 40.0%
GGGTTACAAGAGTAAGATTG+TGG - chr2.2:33611657-33611676 MS.gene81536:intron 40.0%
GTATCCAAAAGTTGCGATTC+AGG - chr2.2:33610474-33610493 MS.gene81536:intron 40.0%
GTGATGTATCTGGTTGTAAG+TGG + chr2.2:33607432-33607451 None:intergenic 40.0%
GTTCATGCATGCATCATGTA+TGG + chr2.2:33610164-33610183 None:intergenic 40.0%
TAAAACTCACCTCTTCCGTT+TGG + chr2.2:33613597-33613616 None:intergenic 40.0%
TAATGGAACAAGTTCCCATG+AGG - chr2.2:33612415-33612434 MS.gene81536:intron 40.0%
TACATGATGCATGCATGAAC+AGG - chr2.2:33610164-33610183 MS.gene81536:intron 40.0%
TACGGTTGAAATCAAGGGTA+GGG - chr2.2:33609767-33609786 MS.gene81536:intron 40.0%
TCAACAAACTCCGGAAATTC+AGG + chr2.2:33608110-33608129 None:intergenic 40.0%
TCAACAACGCTGTAAACCTA+CGG - chr2.2:33607392-33607411 MS.gene81536:intron 40.0%
TCACTTTCAGTAGGAACAAG+AGG + chr2.2:33610308-33610327 None:intergenic 40.0%
TCTCACTGACCGTACTTAAA+CGG - chr2.2:33612880-33612899 MS.gene81536:intron 40.0%
TTGCCACCAAGCTTTCAAAA+GGG + chr2.2:33611743-33611762 None:intergenic 40.0%
! CACACCCCTCTATTTTCTAA+TGG - chr2.2:33612677-33612696 MS.gene81536:intron 40.0%
! CGCAACTTTTGGATACTTAG+GGG + chr2.2:33610470-33610489 None:intergenic 40.0%
! CGTAAGAGGTATGAACATGA+TGG - chr2.2:33607462-33607481 MS.gene81536:CDS 40.0%
! GCAACTTTTGGATACTTAGG+GGG + chr2.2:33610469-33610488 None:intergenic 40.0%
! GTTCTTTAAAAGCACAGAGC+AGG + chr2.2:33609976-33609995 None:intergenic 40.0%
! TCCTCGTTTTGTGATGTATC+TGG + chr2.2:33607442-33607461 None:intergenic 40.0%
! TGAACATGATGGAGAAAACC+CGG - chr2.2:33607473-33607492 MS.gene81536:CDS 40.0%
! TTAATGGACACGTCATCATC+TGG - chr2.2:33608818-33608837 MS.gene81536:intron 40.0%
! TTCACTTGCTAATGGTGTTG+TGG - chr2.2:33607693-33607712 MS.gene81536:intron 40.0%
ACAAGCCATAACAGCTTCCA+TGG + chr2.2:33610026-33610045 None:intergenic 45.0%
ACAGCGTTGTTGAGCCAATT+CGG + chr2.2:33607385-33607404 None:intergenic 45.0%
ACTAATCCTTCGTCTTCCAC+TGG - chr2.2:33613563-33613582 MS.gene81536:CDS 45.0%
ACTGGGTCAAAATTGGGCTA+GGG + chr2.2:33610562-33610581 None:intergenic 45.0%
AGTTTGCATTGCTCTCTGCT+TGG + chr2.2:33610241-33610260 None:intergenic 45.0%
ATTCTACGGAAGAGAAGAGC+AGG - chr2.2:33611694-33611713 MS.gene81536:intron 45.0%
CAGTCTCTACAAAGCTTGAC+CGG - chr2.2:33610058-33610077 MS.gene81536:intron 45.0%
CTACCCTTGATTTCAACCGT+AGG + chr2.2:33609768-33609787 None:intergenic 45.0%
CTACGGTTGAAATCAAGGGT+AGG - chr2.2:33609766-33609785 MS.gene81536:intron 45.0%
CTATTCAATAGTAGTGGCGC+AGG - chr2.2:33613711-33613730 MS.gene81536:CDS 45.0%
GACTGTGGGGTAATACTTCA+AGG - chr2.2:33608896-33608915 MS.gene81536:intron 45.0%
GCAAATGGTACGTGGATGAT+TGG + chr2.2:33610129-33610148 None:intergenic 45.0%
GGAAGAAGACAAAGCTAGGT+TGG - chr2.2:33613469-33613488 MS.gene81536:CDS 45.0%
GTAACGTATACGAAGGGGAA+AGG + chr2.2:33608485-33608504 None:intergenic 45.0%
GTTGAAGCACGAGCTTAAAC+AGG - chr2.2:33610358-33610377 MS.gene81536:intron 45.0%
TACGCAACCTTGATGTTGCT+GGG - chr2.2:33613390-33613409 MS.gene81536:CDS 45.0%
TATGAAGGAAGCCTTGATGG+TGG - chr2.2:33610263-33610282 MS.gene81536:intron 45.0%
TCACAAAACGAGGACGTAAG+AGG - chr2.2:33607448-33607467 MS.gene81536:CDS 45.0%
TCATGCCATGGAAGCTGTTA+TGG - chr2.2:33610018-33610037 MS.gene81536:intron 45.0%
TGAGACTATCACCACCATCA+AGG + chr2.2:33610277-33610296 None:intergenic 45.0%
TTCCCCTTCGTATACGTTAC+TGG - chr2.2:33608485-33608504 MS.gene81536:intron 45.0%
TTTAATGGAACGTGTGAGGC+AGG - chr2.2:33610334-33610353 MS.gene81536:intron 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG - chr2.2:33610522-33610541 MS.gene81536:intron 45.0%
! GAACATGATGGAGAAAACCC+GGG - chr2.2:33607474-33607493 MS.gene81536:CDS 45.0%
! TGGAAGCTGTTATGGCTTGT+TGG - chr2.2:33610026-33610045 MS.gene81536:intron 45.0%
!! AGCGTTGACTGGGTCAAAAT+TGG + chr2.2:33610569-33610588 None:intergenic 45.0%
!! CAACCTCCCTTTTGAAAGCT+TGG - chr2.2:33611734-33611753 MS.gene81536:intron 45.0%
!! GCGTTGACTGGGTCAAAATT+GGG + chr2.2:33610568-33610587 None:intergenic 45.0%
!! GGAAGCTGTTATGGCTTGTT+GGG - chr2.2:33610027-33610046 MS.gene81536:intron 45.0%
!! TCACCTCTTCCGTTTGGTTT+TGG + chr2.2:33613591-33613610 None:intergenic 45.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr2.2:33610738-33610757 MS.gene81536:CDS 5.0%
!! AAAAAAATTTAAAAAAATTC+TGG + chr2.2:33611529-33611548 None:intergenic 5.0%
!! ATATATAATTAAAAATAGAT+GGG + chr2.2:33612555-33612574 None:intergenic 5.0%
!! TAAAAAATAAATAAAAATTC+TGG - chr2.2:33610639-33610658 MS.gene81536:CDS 5.0%
!! TTATTTAGTTATTAATATTA+TGG - chr2.2:33611991-33612010 MS.gene81536:intron 5.0%
!!! AATAATACTTTTAATATTAA+TGG - chr2.2:33612398-33612417 MS.gene81536:intron 5.0%
!!! TTTTATTTTTAAAAAAATGT+TGG - chr2.2:33608189-33608208 MS.gene81536:intron 5.0%
AAAAGGGAGGTTGTGTCACC+GGG + chr2.2:33611727-33611746 None:intergenic 50.0%
ACAGGTGTATCTCCTGGTGA+AGG - chr2.2:33610182-33610201 MS.gene81536:intron 50.0%
ACATGTCCGTGTTCATGCCA+TGG - chr2.2:33610006-33610025 MS.gene81536:intron 50.0%
AGGGAGTGGAGCAACAATGT+CGG - chr2.2:33610202-33610221 MS.gene81536:intron 50.0%
CAAAAGGGAGGTTGTGTCAC+CGG + chr2.2:33611728-33611747 None:intergenic 50.0%
CAACTGCAGCATCCTAAGTC+AGG + chr2.2:33608314-33608333 None:intergenic 50.0%
CAGCTTCCATGGCATGAACA+CGG + chr2.2:33610015-33610034 None:intergenic 50.0%
CAGGTGTATCTCCTGGTGAA+GGG - chr2.2:33610183-33610202 MS.gene81536:intron 50.0%
CCACCAAGCTTTCAAAAGGG+AGG + chr2.2:33611740-33611759 None:intergenic 50.0%
CTACGCAACCTTGATGTTGC+TGG - chr2.2:33613389-33613408 MS.gene81536:CDS 50.0%
CTTAGGATGCTGCAGTTGTG+AGG - chr2.2:33608316-33608335 MS.gene81536:intron 50.0%
GACTGGGTCAAAATTGGGCT+AGG + chr2.2:33610563-33610582 None:intergenic 50.0%
GCATGAACAGGTGTATCTCC+TGG - chr2.2:33610176-33610195 MS.gene81536:intron 50.0%
GCTCCAAAACCAAACGGAAG+AGG - chr2.2:33613585-33613604 MS.gene81536:CDS 50.0%
GGAGAAAATTCTGCTGCCGT+AGG + chr2.2:33607411-33607430 None:intergenic 50.0%
GGTGGCAATCACACTCGAAA+TGG - chr2.2:33611755-33611774 MS.gene81536:intron 50.0%
GGTGGTGATAGTCTCAGCTT+TGG - chr2.2:33610281-33610300 MS.gene81536:intron 50.0%
TGATGGAGAAAACCCGGGAT+CGG - chr2.2:33607479-33607498 MS.gene81536:CDS 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG + chr2.2:33610561-33610580 None:intergenic 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG + chr2.2:33610560-33610579 None:intergenic 50.0%
!! AGACAAAGCTAGGTTGGTCC+AGG - chr2.2:33613475-33613494 MS.gene81536:CDS 50.0%
!! ATTCTGTGTTGCTTTCGGCC+CGG + chr2.2:33607507-33607526 None:intergenic 50.0%
!! CCACTGGCTCCAAAACCAAA+CGG - chr2.2:33613579-33613598 MS.gene81536:CDS 50.0%
!! CCTCCCTTTTGAAAGCTTGG+TGG - chr2.2:33611737-33611756 MS.gene81536:intron 50.0%
!! TGTTATGGCTTGTTGGGAGC+TGG - chr2.2:33610033-33610052 MS.gene81536:intron 50.0%
AAAGGGAGGTTGTGTCACCG+GGG + chr2.2:33611726-33611745 None:intergenic 55.0%
AGAAAACCCGGGATCGGAAC+CGG - chr2.2:33607485-33607504 MS.gene81536:CDS 55.0%
AGAAGAGCAGGAAAGCTCCC+CGG - chr2.2:33611706-33611725 MS.gene81536:intron 55.0%
CTACTACCATTCACCGGAGC+CGG - chr2.2:33607346-33607365 MS.gene81536:intron 55.0%
GTATCTCCTGGTGAAGGGAG+TGG - chr2.2:33610188-33610207 MS.gene81536:intron 55.0%
TTGGAGCCAGTGGAAGACGA+AGG + chr2.2:33613572-33613591 None:intergenic 55.0%
! GGGGCCTGAATCGCAACTTT+TGG + chr2.2:33610481-33610500 None:intergenic 55.0%
!! GCTAGGTTGGTCCAGGAAAC+AGG - chr2.2:33613482-33613501 MS.gene81536:CDS 55.0%
!!! CCGTTTGGTTTTGGAGCCAG+TGG + chr2.2:33613582-33613601 None:intergenic 55.0%
ATCCGCGGAAGCTGATCGAC+GGG + chr2.2:33607628-33607647 None:intergenic 60.0%
GAAAACCCGGGATCGGAACC+GGG - chr2.2:33607486-33607505 MS.gene81536:CDS 60.0%
GATCCGCGGAAGCTGATCGA+CGG + chr2.2:33607629-33607648 None:intergenic 60.0%
GTTGCTCCACTCCCTTCACC+AGG + chr2.2:33610197-33610216 None:intergenic 60.0%
TGACCCAGTCAACGCTGACG+TGG - chr2.2:33610573-33610592 MS.gene81536:intron 60.0%
! TGAAGCTGTGCGTCGATCCG+CGG + chr2.2:33607643-33607662 None:intergenic 60.0%
!! CGTCCACGTCAGCGTTGACT+GGG + chr2.2:33610579-33610598 None:intergenic 60.0%
!! GAGCCAATTCGGCGCTGATC+CGG + chr2.2:33607374-33607393 None:intergenic 60.0%
TTTCGGCCCGGTTCCGATCC+CGG + chr2.2:33607495-33607514 None:intergenic 65.0%
! GTGCCGGATCAGCGCCGAAT+TGG - chr2.2:33607368-33607387 MS.gene81536:intron 65.0%
!! ATTCGGCGCTGATCCGGCAC+CGG + chr2.2:33607368-33607387 None:intergenic 65.0%
!! GCGTCCACGTCAGCGTTGAC+TGG + chr2.2:33610580-33610599 None:intergenic 65.0%
CCATTCACCGGAGCCGGTGC+CGG - chr2.2:33607352-33607371 MS.gene81536:intron 70.0%
CGCCCGTCGATCAGCTTCCG+CGG - chr2.2:33607623-33607642 MS.gene81536:intron 70.0%
GCTTCAGCAGTCGCAGCGCG+TGG - chr2.2:33607657-33607676 MS.gene81536:intron 70.0%
TCAGCAGTCGCAGCGCGTGG+TGG - chr2.2:33607660-33607679 MS.gene81536:intron 70.0%
TTCGGCCCGGTTCCGATCCC+GGG + chr2.2:33607494-33607513 None:intergenic 70.0%
!! CCGGCACCGGCTCCGGTGAA+TGG + chr2.2:33607355-33607374 None:intergenic 75.0%
!! CGCTGATCCGGCACCGGCTC+CGG + chr2.2:33607362-33607381 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 33607253 33613761 33607253 ID=MS.gene81536
chr2.2 mRNA 33607253 33613761 33607253 ID=MS.gene81536.t1;Parent=MS.gene81536
chr2.2 exon 33613273 33613761 33613273 ID=MS.gene81536.t1.exon1;Parent=MS.gene81536.t1
chr2.2 CDS 33613273 33613761 33613273 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
chr2.2 exon 33610935 33611055 33610935 ID=MS.gene81536.t1.exon2;Parent=MS.gene81536.t1
chr2.2 CDS 33610935 33611055 33610935 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
chr2.2 exon 33610635 33610828 33610635 ID=MS.gene81536.t1.exon3;Parent=MS.gene81536.t1
chr2.2 CDS 33610635 33610828 33610635 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
chr2.2 exon 33609225 33609356 33609225 ID=MS.gene81536.t1.exon4;Parent=MS.gene81536.t1
chr2.2 CDS 33609225 33609356 33609225 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
chr2.2 exon 33607408 33607544 33607408 ID=MS.gene81536.t1.exon5;Parent=MS.gene81536.t1
chr2.2 CDS 33607408 33607544 33607408 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
chr2.2 exon 33607253 33607292 33607253 ID=MS.gene81536.t1.exon6;Parent=MS.gene81536.t1
chr2.2 CDS 33607253 33607292 33607253 ID=cds.MS.gene81536.t1;Parent=MS.gene81536.t1
Gene Sequence

>MS.gene81536

ATGGCTTTTCATCAGGACCATCTCTCTCATGAAATCAATTTTCAACCATTCAGTGAAGAGCAACAGTTAAATCAAAGCAGAGATATGCAAAGACTACTACCATTCACCGGAGCCGGTGCCGGATCAGCGCCGAATTGGCTCAACAACGCTGTAAACCTACGGCAGCAGAATTTTCTCCACTTACAACCAGATACATCACAAAACGAGGACGTAAGAGGTATGAACATGATGGAGAAAACCCGGGATCGGAACCGGGCCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATACAAAGCAGACATACTTGGACACCCTCTTTACGATCAGCTTCTATCTGCTCATGTTTCGTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGGTTAGTTACAACAACCCAAACCTAATTTTATTATTTAACATCAATTATATATCTTCTTATCCATGCAAATTTATTCTATTCATCTCTATTACCCCACTACAACTACTTTAATCAACTTTTCAATGATAGATTTGTATGATTTTATTTATGTCTCTATTTCTTTGTTGCTGTTGTCGCTTTTTAACCTAATTAACTATGTGCAATAACAATACTGCAATAGTAGTAAGCTTCTTTACTATTCTAATAATTAAGCTTCTTTGTGATTTTAATATTTTTAATCAAAATTTTGTCTAGATTTGGGTGCTTTTGTTTCCTTATTTATTTTTTTTTATTTTACTCTTATTTTGTGAAACTCTTTGATCTTTCCTGAATTTCCGGAGTTTGTTGATTAGACTTTAAAAAACAGTAAACGAGGAGAGGATAATGGAAAAAGTAACATTCTTTTTATTTTATTTTTAAAAAAATGTTGGACTGTAGTAGTACGAATTGTGAGTAAATGAATCTGATTTTTTTTCCTCTAATAAGGAAAAGAGAGTCATTAATAGAGTAAATGAGTGTAATTAGTTTGTCCTGACTTAGGATGCTGCAGTTGTGAGGTTTTCCCTTTACTTTTTCTTCGAACATTTTGATTAAAGTTGTGAAAAATATTTATTCCCCATTTGTTGCAAGGATCAATTGTTTACTCTTTTTGCCGACTTGAATCTTAATTTGATGGTTTATAAGTTCTTTAATTTTATCAACCTTTCCCCTTCGTATACGTTACTGGTTTGATTAATATACCCGCAAATTATTGATGGTAGTTGGTAAATTTAATTGTTTATACATTAATTGATTCATTTTCAACGTTGATTGAGGACTTTGTTAAATAAGAAACAGAAAATAATCTAGTCACTAAAAATATAAAAATAAAATAAAAAATATTTGGTGTTCGGTAACCCATATATTGTGACATTAACTAATTTTTGGTTCAACCTTTAGATCTTCATCTTAGATGAATAAAACTGTGTCTGTGACTGTGACTTTGACTTGCTTGCGAGTAAATTGTTTTCATTTTGATTTCTTAATGATATTTTGCATTAATGGACACGTCATCATCTGGCTTATTATTGATTCTGTTAATTTTTTTTACAAACAAACAAAAATTTATGACATAGGACTGTGGGGTAATACTTCAAGGGTTGCACCTCGTGATACTGAATTTTAGTGATATTGATGATATTGTGTTTATCTCTCTCAGTTATAATCATTCTCTTTCATCAAAATATATACATCATCCGGTCACTATTATAAGCAAAACTTTGCATTTTAGGTTCATTCATTAAATGATGTATGTGGTCTATAATAAAGACCATATACAACATTAATTGAATGAATCTAAAATGCAAAATTTTGCTTATAATAATGACCGGAAGGTGTAATAACGTTATCAATGTCATAAAAACTCAATGTCATCCATATATTTTCCATCCGTCAATCTATTACGTATCTACTCCTATGATTCTTTCATGTTGTTGCTGTAAGTGGGTAATTTCGTCCTTCTGATTCACACTATCAAAATCTAATCATATATTTTTATTCATTGAATCGTTATATGATAATAATTTGATCAATTATTTTACAAGTGTAGAGAGTCTCACGTATTAAGTGAGTTTATAATTGGGATATCATCTCATCTTACAAATTAGTTTTGTATGGGTTGACTCAAAATCAATCCAAATTTTAAGATTAAGCTTTTACATAACTAAAGAAAATCAACAATTTTTCAACTTGTCAAAATTATTAGATTTTTTTTAACACAAAATTATTAAACCTCTAATGTTTAATTTTTTTCTTGCACCAATTTATATTTCAACAATAAATTGTTAATGGAAAATAAAACATCTCTAATATGGAATAGACCCTACATTCAAGTTTCCTGCATTTCCTTATATTTGTATTACAATCGTTGTGATTTTAGTATTTTCATTTTCTATATCATATTTATCACTCCTCTCTTTTATTTACATTTGAACTGAATGTAGAACCTACGGTTGAAATCAAGGGTAGGGAATCGCAATCCCTCCAATATAACATATGAATGTTAACAGAGTTCTACTAAAAAGTAGACAATTAAAAATAAATAGAAAAGTTGATTTAACTTTTAGTGTTGGATGACTAGTAAAATAAGAGCTAGAAATGTTGATTTGTATTTTGTTCTGATACATATTTTTGTTGTAGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTACAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTAATTAAGTTTCAACTATCAGTAATGATATCTTTGTTTCAAATTTCCAATCATCCACGTACCATTTGCAAAGATAAAAAGCCATACATGATGCATGCATGAACAGGTGTATCTCCTGGTGAAGGGAGTGGAGCAACAATGTCGGACGATGAAGACGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTTAAACAGGTAGCACATTATAACTTTCTCATATATATGCAATGCAATGCAATGCAACCATGGTGTATATATTTTAGGCTTAATTACACTTTTGGCCCCCTAAGTATCCAAAAGTTGCGATTCAGGCCCCCTAAAAAAAATAACTCTTTTCAGGCCCCTTAAGTTCACTTTTGGTTGCAATTTTGGCCCCCTAGCCCAATTTTGACCCAGTCAACGCTGACGTGGACGCATATTTGAATTTTTTAATATTTTTTTTTAATTTTGTAATTAAAAAATAAATAAAAATTCTGGAAAAATGAAAAATTAATAAAAAAATTGATTTTTTTTTAAAAAATTCTAAAAAATTAAAAATTAATAAAAAATTGGAAAAAAAATATTAAAAAATTCTGAAAAATTGAAAACAATTCTGGAAAATTGAAAAATTAATAAAGAAATTGAAAAAAAATATTAAAAAATTCTGGAAAATTGAAAAATTAATAAAAATGAAAAATAATTGAAAAAATACGGAAAAATTAATAAAAATAAAAAATGATTAAAAAATTGAAAATTCATTAGTATTAAAAAAATTTAAAAATTGAAAAAAATTAAAAAAATTTAAAAATTTCGAAAATATCTGGAAAATTTGAAAACGGAATTCTGGAAAATTGAAAAAATTGAAAATTCTGGAAAATACGGAAAATATTTAAAAATTTTCGAAATTTTCATTCGTATTTTTTCTGGGAATTTTTGTGTATTTATAAACCGAGATACACATAATTTTTTGTAAACCGGAATACACATAATGAAAATTTCCCGGAAAAAATACTAATGAAAATTTTTCCAGAAAAAATACTAATGAAAATTTAGAAGTTTCGAAAAATACACTGAAAAAACCTAAGCTCGACATATATACTAATGAAAATTTCGAAATTTCGAGAAATAGTAATGAAAATTTCAAAAATTTCATTTTTTTAAAAATGATTAATCTTTTTAATTTTTTCGAAAATTTCGAATTTTTTTTAAATATTTTCCAGAATTTTTATTTTTCATTAAAATTTCGAAAATTTCATTTTTCCAGAATTTTAATTTTTTTTAGAAAATTTCGAAATTTTATTTTTTCAGAATTTTTTAGATTATTTTATTTTTTTAATCATTTTTTATTAATTTTTCAATTATCCAGAATTTTTTTAAATTTTTTTTATACGTGACATGCATGTGTCTTTGCAAAGATGAAAGAATCAATCACATAATTATTTAAAATGGATTGATTTGCATAGTTAATTAATTTAATGTTTTTTCAATATGCAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCAGGAAAGCTCCCCGGTGACACAACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCGAAATGGCCTTATCCAACTGTAAGTTTTAAGATCAATGTCCGTGACAATTGTCATATCGTATATCTATAAAAAAAAATTAATAAAAATTGGTTTTTCTCCTATGACAACTATGGAGTAAATTGAAATTAAATTAGAATTATATGATATTTTTTACTCTTAAGAATAAAACATATACCTTAAAAATTAGTATATTTTGAAACTAATCTAATATTAATTATTTTATTTAGTTATTAATATTATGGATTATTTTAAAAAAAAGGTGGAGTAGTAATATCTTTTCCTCCAATACCCTTATCCATTATTGATCTATTTAGATTAACATGTTTTTTAATCTTTATAAATAGTATATCAAAAATAGAAAGAAATATAGGAGTATTAATAAACTGGTACAAGATAGATAATATATGTATAAAAATATAAAATCTTCAATAATAATAACAATGTCCCAAAGTTTTAAATAATTCATAAAAAAAACTAATTTTATACTTCCTTCTAACAACAAAAAAGTCTTTTTTTTTTAGGGATCCAACAAAAAAGTCTTATTTTGTTATCTCAAATATAAGAAAAAAAATCAACTAACCCTATCATATTTAGTGTGATCATTCTTAAATTTAAATTTATTTTTCAATAATACTTTTAATATTAATGGAACAAGTTCCCATGAGGGTATTTTAAAGAAAATTAAATGAAGTGAACTATTTTTCTCAAAGGGTGTGAGGTAGTTTGCTTTTGTTGAATGAAATCCTAGGAAGTATATGTCGAAACTCATTTGAATAATTACCCATCTATTTTTAATTATATATCATTTTGCCACTTTCATGCGTATCAAGAAATGTAATTGATTTTATATAAAAAAATTAGAGTAAATTACACTTACCTTCCTTGAAGTTTGTTAAAATGTCACTCACACCCCTCTATTTTCTAATGGGACACAAACCTTCACTACTTAATTTTCAATGTCAAGAAAATAACTTAATCAAGAAAATGACCTAGAAAATTCAAATAAAGGTAAATTAAATAATCTCGTTCAAGGAGTTTTTTGGAAAAAATGCAAAAAGTTAGGGCACAACTCTCAAAACTTAAGAGGCAAAGTGTACAATTGTGTTTTTCTCACTGACCGTACTTAAACGGTGTTAACTTGAGGGGATGTAATTGTTTTTTTACCTTAAATATAAGGGGATTTTGTGTTGTTTAGTTAAACCTCAAAGGAGGTAAATGTAATTTTACCAAAAAATTATGAGTGATTTTATAAAATTATTCTTTATTAACATTAATAACATGTGAAAAAAAACATTAATATTTTTTTATAAGCAAAAATTATTAATATTTAATTGATATCATAAAGTGATTTATAAATTGGTAAAAACAAAATTTGTTTTCAAAATATACTTATGTGATTTGAAAATATACTAGTGAAGAGTAATTAGAAAAGTCTTGCACCCTCGTAATTTTCTCTCGAATAATACTGTGTCTCCCAATGTGTCAAGTCATAAGCATATAGTAGAACTTGATTATTTATCCGTACTAGTAATGATCAAGAAGACAACCATGACTGGTGAATTAATAACGTATTAATGTTATGTTCCAATTAATGTGCCTAGCTAACTAAGAATTCATCTACGCAACCTTGATGTTGCTGGGCATTATTTGCCTCTTCCATGAATGCTAATCATGTTAAACTCGTGAATGTACTTTTAGGAAGAAGACAAAGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGGAAGAGGTGAGTTTTATTTCCCTAATAATGGACTCTTTTTTCTTGTTTCACAATGTGTTTATTTTAATTGATGCTTAATCTGATTCTTGTTTTTTGTTTTTTGTTTTTTACTATTCAATAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCATGTGA
Protein sequence

>MS.gene81536.t1

MAFHQDHLSHEINFQPFSEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMEKTRDRNRAESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM