AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81637

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81637.t1 MTR_5g085310 80.357 56 11 0 112 167 932 987 2.80e-22 92.8
MS.gene81637.t1 MTR_5g085310 71.154 52 11 1 18 69 383 430 1.43e-14 70.9
MS.gene81637.t1 MTR_3g101100 41.429 140 43 4 32 167 1237 1341 2.39e-20 87.4
MS.gene81637.t1 MTR_3g101100 77.273 44 10 0 26 69 677 720 1.81e-14 70.5
MS.gene81637.t1 MTR_3g107960 78.000 50 11 0 118 167 1103 1152 9.73e-20 85.9
MS.gene81637.t1 MTR_3g107960 68.182 44 14 0 26 69 502 545 8.21e-13 65.9
MS.gene81637.t1 MTR_6g017010 65.517 58 18 1 112 167 661 718 1.61e-16 76.3
MS.gene81637.t1 MTR_6g017010 66.667 42 14 0 28 69 135 176 3.34e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 24 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGGTTGCATACAATTTC+AGG 0.241704 5.1:+67180343 None:intergenic
ATGCAAAATTCGAGTGAATT+GGG 0.338777 5.1:-67178797 MS.gene81637:CDS
AATGCAAAATTCGAGTGAAT+TGG 0.339185 5.1:-67178798 MS.gene81637:CDS
GATGAGAAAATCACATTCAA+TGG 0.376475 5.1:-67181478 MS.gene81637:CDS
TCATGCAAGAGAGAGGAAAC+TGG 0.410600 5.1:-67181077 MS.gene81637:CDS
ATCTCAATGCCGCGCAACTA+AGG 0.439497 5.1:-67178881 MS.gene81637:CDS
AGATGAAGTACTTGAAGAAC+CGG 0.440007 5.1:-67181416 MS.gene81637:intron
TTCTTGATTTGAGAACAGTA+TGG 0.446378 5.1:+67178841 None:intergenic
TTTCTTGTCTTCCTCAACAT+TGG 0.469012 5.1:+67182237 None:intergenic
ATGAGAAAATCACATTCAAT+GGG 0.496081 5.1:-67181477 MS.gene81637:CDS
TCTTCCTCAACATTGGAAGC+AGG 0.504734 5.1:+67182244 None:intergenic
TCAACATTGGAAGCAGGAGT+TGG 0.505913 5.1:+67182250 None:intergenic
TTTGATGTGTGAGAAGAACT+TGG 0.528186 5.1:+67182213 None:intergenic
AACTCCTGCTTCCAATGTTG+AGG 0.543778 5.1:-67182248 MS.gene81637:CDS
TGCAAAATTCGAGTGAATTG+GGG 0.567604 5.1:-67178796 MS.gene81637:CDS
CATGCAAGAGAGAGGAAACT+GGG 0.568003 5.1:-67181076 MS.gene81637:CDS
ATGGTTCAGCCTTAGTTGCG+CGG 0.575355 5.1:+67178872 None:intergenic
GAGCGTCTCATGCAAGAGAG+AGG 0.599848 5.1:-67181084 MS.gene81637:CDS
TTGATGTGTGAGAAGAACTT+GGG 0.611930 5.1:+67182214 None:intergenic
GAACAGTATGGACGAGAGCA+TGG 0.616911 5.1:+67178853 None:intergenic
ATTGGAAGCAGGAGTTGGAG+TGG 0.619025 5.1:+67182255 None:intergenic
CTTCTCACACATCAAATCGA+AGG 0.643032 5.1:-67182206 MS.gene81637:intron
TAGGATTCTCCACAGACTGG+CGG 0.664722 5.1:-67180372 MS.gene81637:intron
AGGGAATGAGAAACTTGATG+AGG 0.676669 5.1:-67181043 MS.gene81637:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAATTATTCAATAAAA+GGG - chr5.1:67181366-67181385 MS.gene81637:intron 10.0%
!! TCAATAAATTATTCAATAAA+AGG - chr5.1:67181365-67181384 MS.gene81637:intron 10.0%
!! TTAAAGAAAAAAAATTCAAA+CGG + chr5.1:67180866-67180885 None:intergenic 10.0%
!!! AATTATTTTTTTAGCTTTTT+TGG + chr5.1:67180963-67180982 None:intergenic 10.0%
!! AAAAATTGCAGAAAAAAAAT+TGG + chr5.1:67179208-67179227 None:intergenic 15.0%
!! AAAGTAAAAAACTAAAAAGT+AGG + chr5.1:67179468-67179487 None:intergenic 15.0%
!! ATATATTAATAATCTAGTAC+CGG - chr5.1:67181529-67181548 MS.gene81637:intron 15.0%
!! GTATATTAATAATCTATTAC+CGG + chr5.1:67180844-67180863 None:intergenic 15.0%
!! TTATTATAACAACTGATATT+AGG + chr5.1:67180927-67180946 None:intergenic 15.0%
!! TTCTTATATAATGTGTATTT+CGG + chr5.1:67181078-67181097 None:intergenic 15.0%
!! TTTAATACACATAAATTTCA+AGG + chr5.1:67178987-67179006 None:intergenic 15.0%
!! TTTACAAATATGTCTAATAT+TGG + chr5.1:67181465-67181484 None:intergenic 15.0%
!!! AATTTTTTTTCTGCAATTTT+TGG - chr5.1:67179207-67179226 MS.gene81637:intron 15.0%
!!! ATTTGTTGATTATTAACTTA+TGG - chr5.1:67180515-67180534 MS.gene81637:intron 15.0%
!!! ATTTTTAAAGTATTGAGTAT+TGG + chr5.1:67180398-67180417 None:intergenic 15.0%
!!! TACATCTTTTAATCAATTTA+AGG + chr5.1:67180323-67180342 None:intergenic 15.0%
!!! TTATGTATTTTTGTTCTTTT+TGG - chr5.1:67178924-67178943 MS.gene81637:intron 15.0%
!!! TTCCATTTTCTATTTATTTT+AGG + chr5.1:67179849-67179868 None:intergenic 15.0%
!! AAGAGTGGTAAAAAATATTT+GGG - chr5.1:67179343-67179362 MS.gene81637:intron 20.0%
!! AATCATATGAACTTAACTTT+AGG + chr5.1:67181666-67181685 None:intergenic 20.0%
!! AGAAATGTTTAAGTAGAAAT+TGG + chr5.1:67180466-67180485 None:intergenic 20.0%
!! AGAGTTAACTATTCATTAAA+AGG + chr5.1:67181204-67181223 None:intergenic 20.0%
!! GAATAATTAACTTTCATCAT+TGG + chr5.1:67181179-67181198 None:intergenic 20.0%
!! TAAAAGAATCCAATTGAAAA+AGG + chr5.1:67179249-67179268 None:intergenic 20.0%
!! TTCTTATATAATGTGTATTC+TGG - chr5.1:67181300-67181319 MS.gene81637:intron 20.0%
!!! AAAGATTATACTAATTTGCA+TGG + chr5.1:67181707-67181726 None:intergenic 20.0%
!!! ATTTTCATCCAAATTTATAC+TGG - chr5.1:67180183-67180202 MS.gene81637:intron 20.0%
!!! CATTTTCTATTTATTTTAGG+CGG + chr5.1:67179846-67179865 None:intergenic 20.0%
!!! TGATTTAATTTTCACTTCAA+AGG - chr5.1:67180751-67180770 MS.gene81637:intron 20.0%
!!! TTTCAAATAATGCATTTTCA+AGG + chr5.1:67181797-67181816 None:intergenic 20.0%
!!! TTTTCAAACCAGTATAAATT+TGG + chr5.1:67180194-67180213 None:intergenic 20.0%
!!! TTTTCATTAATTGTTTGCTA+CGG - chr5.1:67182059-67182078 MS.gene81637:intron 20.0%
!!! TTTTTCAATTGGATTCTTTT+AGG - chr5.1:67179248-67179267 MS.gene81637:intron 20.0%
! AAAAAACTAAAAAGTAGGAC+TGG + chr5.1:67179463-67179482 None:intergenic 25.0%
! AAGTCAAAAACAATCTATTC+CGG + chr5.1:67181551-67181570 None:intergenic 25.0%
! AAGTCAATAAAAATCTACTC+CGG - chr5.1:67180822-67180841 MS.gene81637:intron 25.0%
! AATGCAATAAATACGAAAGA+TGG - chr5.1:67179739-67179758 MS.gene81637:intron 25.0%
! ACACACTTCAATTAAAAATG+AGG - chr5.1:67181610-67181629 MS.gene81637:intron 25.0%
! ATGAGAAAATCACATTCAAT+GGG - chr5.1:67179565-67179584 MS.gene81637:intron 25.0%
! CAAGCTGAATTATATAGTAA+TGG + chr5.1:67179665-67179684 None:intergenic 25.0%
! CATAAGAATAAGAAAAAGAC+AGG + chr5.1:67180127-67180146 None:intergenic 25.0%
! CGCCTAAAATAAATAGAAAA+TGG - chr5.1:67179844-67179863 MS.gene81637:intron 25.0%
! GAAGAGTGGTAAAAAATATT+TGG - chr5.1:67179342-67179361 MS.gene81637:intron 25.0%
! GATGAATTAAGAAATCAACT+AGG - chr5.1:67180651-67180670 MS.gene81637:intron 25.0%
! TAATTAACTTTCATCATTGG+TGG + chr5.1:67181176-67181195 None:intergenic 25.0%
! TAATTGTTGTCCAGAATATA+AGG - chr5.1:67181939-67181958 MS.gene81637:intron 25.0%
! TAGTATTCTTTAGATGATAG+AGG + chr5.1:67181891-67181910 None:intergenic 25.0%
! TCAATGTACAATCACTTATT+AGG - chr5.1:67179103-67179122 MS.gene81637:intron 25.0%
! TGACGTGTAATTTCATAATT+TGG - chr5.1:67181323-67181342 MS.gene81637:intron 25.0%
! TGTAATAACTATCCAATTTC+AGG + chr5.1:67179146-67179165 None:intergenic 25.0%
! TTCTAGATTCTTTACTTATG+TGG - chr5.1:67180214-67180233 MS.gene81637:intron 25.0%
!! TTTTTCTTCTTGTTGAACAA+CGG + chr5.1:67180719-67180738 None:intergenic 25.0%
!!! AGGATCATAAAAGTATTCTA+AGG - chr5.1:67179279-67179298 MS.gene81637:intron 25.0%
AAAAGATGTATCATGCTGAA+TGG - chr5.1:67180333-67180352 MS.gene81637:CDS 30.0%
AATGCAAAATTCGAGTGAAT+TGG - chr5.1:67182244-67182263 MS.gene81637:CDS 30.0%
AATTTGCATGGAACTACTAA+TGG + chr5.1:67181695-67181714 None:intergenic 30.0%
AGACGAGTTAAATCAAAAAC+CGG - chr5.1:67181999-67182018 MS.gene81637:intron 30.0%
AGTGTGAGAATATAAGTCTA+GGG - chr5.1:67179039-67179058 MS.gene81637:intron 30.0%
ATGCAAAATTCGAGTGAATT+GGG - chr5.1:67182245-67182264 MS.gene81637:CDS 30.0%
GAATAGTTAACTCTCTTCAT+CGG - chr5.1:67181210-67181229 MS.gene81637:intron 30.0%
GATGAGAAAATCACATTCAA+TGG - chr5.1:67179564-67179583 MS.gene81637:intron 30.0%
GTTCATCATTGAGGAATATT+TGG + chr5.1:67181869-67181888 None:intergenic 30.0%
TAGGATTGTTAGCAGTAAAA+TGG - chr5.1:67180360-67180379 MS.gene81637:CDS 30.0%
TCAAGGATTACTTTGATTAG+AGG + chr5.1:67178970-67178989 None:intergenic 30.0%
TTGAATTGCTGCAAAATTGT+AGG - chr5.1:67180238-67180257 MS.gene81637:intron 30.0%
! ATCATACTGTTGATTGTTGA+AGG + chr5.1:67181769-67181788 None:intergenic 30.0%
! TAATGGATCGTAAAACTTAC+CGG + chr5.1:67179648-67179667 None:intergenic 30.0%
! TCATACTGTTGATTGTTGAA+GGG + chr5.1:67181768-67181787 None:intergenic 30.0%
! TTCTTGATTTGAGAACAGTA+TGG + chr5.1:67182204-67182223 None:intergenic 30.0%
!! AACATTTGTTTTCCAATGCA+AGG - chr5.1:67179311-67179330 MS.gene81637:intron 30.0%
!! ACATTTGTTTTCCAATGCAA+GGG - chr5.1:67179312-67179331 MS.gene81637:intron 30.0%
!!! AGAAGATGATTTTGATTCAC+AGG - chr5.1:67179506-67179525 MS.gene81637:intron 30.0%
!!! ATCCAATTTCAGGTTTTTCT+TGG + chr5.1:67179136-67179155 None:intergenic 30.0%
!!! ATTTATTTTAGGCGGCATAA+AGG + chr5.1:67179838-67179857 None:intergenic 30.0%
!!! GAAGATGATTTTGATTCACA+GGG - chr5.1:67179507-67179526 MS.gene81637:intron 30.0%
!!! TCCAATTTCAGGTTTTTCTT+GGG + chr5.1:67179135-67179154 None:intergenic 30.0%
!!! TTTTTCTGCAATTTTTGGCA+TGG - chr5.1:67179212-67179231 MS.gene81637:intron 30.0%
AGACAATTCATGTAAGTCCA+AGG - chr5.1:67179387-67179406 MS.gene81637:intron 35.0%
ATGATAGAGGTTCATCATTG+AGG + chr5.1:67181878-67181897 None:intergenic 35.0%
CAATGCTTAGACACAATTCA+AGG + chr5.1:67180783-67180802 None:intergenic 35.0%
CACAAGAACCAAAATGAGAA+AGG + chr5.1:67181142-67181161 None:intergenic 35.0%
CTCACAGATCTTTGATGTAT+TGG - chr5.1:67179168-67179187 MS.gene81637:intron 35.0%
CTTGATTCAACTTGTGTTGA+TGG + chr5.1:67181981-67182000 None:intergenic 35.0%
GAAACTGGGAAAAAGTTGAA+GGG - chr5.1:67179980-67179999 MS.gene81637:intron 35.0%
GAAGTTTATGTACATGCATG+CGG + chr5.1:67180039-67180058 None:intergenic 35.0%
GAGTGTGAGAATATAAGTCT+AGG - chr5.1:67179038-67179057 MS.gene81637:intron 35.0%
GTATCTCTCTCCTTATATTC+TGG + chr5.1:67181952-67181971 None:intergenic 35.0%
GTTAGCAGTAAAATGGTCTA+TGG - chr5.1:67180367-67180386 MS.gene81637:intron 35.0%
TAGACTGTTACATCACAAAG+TGG + chr5.1:67181641-67181660 None:intergenic 35.0%
TGCAAAATTCGAGTGAATTG+GGG - chr5.1:67182246-67182265 MS.gene81637:CDS 35.0%
TGTGAACAGCAATCAGAAAT+TGG + chr5.1:67180496-67180515 None:intergenic 35.0%
TTATATTCCCTACACACAGA+TGG - chr5.1:67182111-67182130 MS.gene81637:intron 35.0%
TTGATGTGTGAGAAGAACTT+GGG + chr5.1:67178831-67178850 None:intergenic 35.0%
TTTCTTGTCTTCCTCAACAT+TGG + chr5.1:67178808-67178827 None:intergenic 35.0%
TTTGATGTGTGAGAAGAACT+TGG + chr5.1:67178832-67178851 None:intergenic 35.0%
! AGATGAAGTACTTGAAGAAC+CGG - chr5.1:67179626-67179645 MS.gene81637:intron 35.0%
! CATACTGTTGATTGTTGAAG+GGG + chr5.1:67181767-67181786 None:intergenic 35.0%
! GATTCTTTTAGGCTACAAGT+AGG - chr5.1:67179259-67179278 MS.gene81637:intron 35.0%
!! ATGACTGTTGTTTCTTCTTG+TGG - chr5.1:67179712-67179731 MS.gene81637:intron 35.0%
!! TGACTGTTGTTTCTTCTTGT+GGG - chr5.1:67179713-67179732 MS.gene81637:intron 35.0%
!!! CCAATTTCAGGTTTTTCTTG+GGG + chr5.1:67179134-67179153 None:intergenic 35.0%
!!! CGGAGTTTACCTTTTTCAAT+TGG - chr5.1:67179237-67179256 MS.gene81637:intron 35.0%
!!! TGAGTTTTTTTGCTTTGCCT+TGG + chr5.1:67179407-67179426 None:intergenic 35.0%
AAAGTTAGCAGCCTATAGTG+AGG + chr5.1:67179881-67179900 None:intergenic 40.0%
AAGTTAGCAGCCTATAGTGA+GGG + chr5.1:67179880-67179899 None:intergenic 40.0%
AATGCATGTTCCCTCACTAT+AGG - chr5.1:67179867-67179886 MS.gene81637:intron 40.0%
ACATCAAATCGAAGGTCCAA+GGG - chr5.1:67178844-67178863 MS.gene81637:CDS 40.0%
AGGGAATGAGAAACTTGATG+AGG - chr5.1:67179999-67180018 MS.gene81637:intron 40.0%
CAAAATGAGAAAGGAGAGAG+AGG + chr5.1:67181133-67181152 None:intergenic 40.0%
CAACGGTTGCATACAATTTC+AGG + chr5.1:67180702-67180721 None:intergenic 40.0%
CACAAGAACCAAAATGAGAG+AGG - chr5.1:67181247-67181266 MS.gene81637:intron 40.0%
CCCCAAGAAAAACCTGAAAT+TGG - chr5.1:67179131-67179150 MS.gene81637:intron 40.0%
CTACAACAAGAAAGCAGATG+TGG - chr5.1:67179782-67179801 MS.gene81637:intron 40.0%
CTGTTACATCACAAAGTGGA+TGG + chr5.1:67181637-67181656 None:intergenic 40.0%
CTTCTCACACATCAAATCGA+AGG - chr5.1:67178836-67178855 MS.gene81637:CDS 40.0%
GACACATATAGAGAGAGAGA+TGG + chr5.1:67181106-67181125 None:intergenic 40.0%
GAGAAAAACGAATTTGCCCT+TGG + chr5.1:67178863-67178882 None:intergenic 40.0%
GGAAACTGGGAAAAAGTTGA+AGG - chr5.1:67179979-67179998 MS.gene81637:intron 40.0%
GTTAAATCAAAAACCGGTGC+TGG - chr5.1:67182005-67182024 MS.gene81637:intron 40.0%
TAGTTAACTCTCTTCATCGG+TGG - chr5.1:67181213-67181232 MS.gene81637:intron 40.0%
TATCATGCTGAATGGCTCAT+AGG - chr5.1:67180341-67180360 MS.gene81637:CDS 40.0%
TCACTATAGGCTGCTAACTT+TGG - chr5.1:67179880-67179899 MS.gene81637:intron 40.0%
TCATTGAGGAATATTTGGCG+TGG + chr5.1:67181864-67181883 None:intergenic 40.0%
TGGGAAACAACATTAGCAGT+TGG - chr5.1:67179362-67179381 MS.gene81637:intron 40.0%
! AAGAAAGCAGATGTGGATTG+TGG - chr5.1:67179789-67179808 MS.gene81637:intron 40.0%
! CGAAGAGTCTTTTCTCTAAC+TGG + chr5.1:67179939-67179958 None:intergenic 40.0%
! CTCTCTCTCCTTTCTCATTT+TGG - chr5.1:67181131-67181150 MS.gene81637:intron 40.0%
! TGTCTCAACCTCTCTCATTT+TGG + chr5.1:67181258-67181277 None:intergenic 40.0%
AACTAGGATTCTCCACAGAC+TGG - chr5.1:67180667-67180686 MS.gene81637:intron 45.0%
AACTCCTGCTTCCAATGTTG+AGG - chr5.1:67178794-67178813 MS.gene81637:CDS 45.0%
AACTGTGTTCTTACCAGCAC+CGG + chr5.1:67182021-67182040 None:intergenic 45.0%
AATCGAGAAGATGCTTGCCA+AGG - chr5.1:67180564-67180583 MS.gene81637:intron 45.0%
AATGAGAAAGGAGAGAGAGG+TGG + chr5.1:67181130-67181149 None:intergenic 45.0%
AATTGAAGTGTGTGCGTCAG+CGG + chr5.1:67181603-67181622 None:intergenic 45.0%
ATCGAGAAGATGCTTGCCAA+GGG - chr5.1:67180565-67180584 MS.gene81637:intron 45.0%
CACATCAAATCGAAGGTCCA+AGG - chr5.1:67178843-67178862 MS.gene81637:CDS 45.0%
CAGTTCACCATCTGTGTGTA+GGG + chr5.1:67182121-67182140 None:intergenic 45.0%
CATGCAAGAGAGAGGAAACT+GGG - chr5.1:67179966-67179985 MS.gene81637:intron 45.0%
GTACATGCATGCGGATTTCT+AGG + chr5.1:67180030-67180049 None:intergenic 45.0%
TCAACATTGGAAGCAGGAGT+TGG + chr5.1:67178795-67178814 None:intergenic 45.0%
TCATGCAAGAGAGAGGAAAC+TGG - chr5.1:67179965-67179984 MS.gene81637:intron 45.0%
TCTTCCTCAACATTGGAAGC+AGG + chr5.1:67178801-67178820 None:intergenic 45.0%
TTGAGGAATATTTGGCGTGG+CGG + chr5.1:67181861-67181880 None:intergenic 45.0%
! TTTCATCATTGGTGGACGCA+TGG + chr5.1:67181168-67181187 None:intergenic 45.0%
!!! CTGCAATTTTTGGCATGGAG+CGG - chr5.1:67179217-67179236 MS.gene81637:intron 45.0%
!! TTAATAAATTATTCAATAAA+AGG + chr5.1:67181013-67181032 None:intergenic 5.0%
ATCTCAATGCCGCGCAACTA+AGG - chr5.1:67182161-67182180 MS.gene81637:intron 50.0%
ATGGTTCAGCCTTAGTTGCG+CGG + chr5.1:67182173-67182192 None:intergenic 50.0%
ATTGGAAGCAGGAGTTGGAG+TGG + chr5.1:67178790-67178809 None:intergenic 50.0%
CCAAGGGTTGTCATCTTGGT+GGG - chr5.1:67180581-67180600 MS.gene81637:intron 50.0%
CTTGCCAAGGGTTGTCATCT+TGG - chr5.1:67180577-67180596 MS.gene81637:intron 50.0%
GAACAGTATGGACGAGAGCA+TGG + chr5.1:67182192-67182211 None:intergenic 50.0%
GCAGTTCACCATCTGTGTGT+AGG + chr5.1:67182122-67182141 None:intergenic 50.0%
TAGGATTCTCCACAGACTGG+CGG - chr5.1:67180670-67180689 MS.gene81637:intron 50.0%
TGAGGAATATTTGGCGTGGC+GGG + chr5.1:67181860-67181879 None:intergenic 50.0%
! CGTGGCGGGAAATGATTCTT+CGG + chr5.1:67181846-67181865 None:intergenic 50.0%
! GTGGCGGGAAATGATTCTTC+GGG + chr5.1:67181845-67181864 None:intergenic 50.0%
! TTTCCAATGCAAGGGTGCAG+CGG - chr5.1:67179320-67179339 MS.gene81637:intron 50.0%
AGGATGATACCGCCAGTCTG+TGG + chr5.1:67180682-67180701 None:intergenic 55.0%
CCCACCAAGATGACAACCCT+TGG + chr5.1:67180584-67180603 None:intergenic 55.0%
GAGCGTCTCATGCAAGAGAG+AGG - chr5.1:67179958-67179977 MS.gene81637:intron 55.0%
GCCAAGGGTTGTCATCTTGG+TGG - chr5.1:67180580-67180599 MS.gene81637:intron 55.0%
TCTCTTCATCGGTGGACGCA+TGG - chr5.1:67181221-67181240 MS.gene81637:intron 55.0%
CTTCCGCTGCACCCTTGCAT+TGG + chr5.1:67179326-67179345 None:intergenic 60.0%
! GCAAGGGTGCAGCGGAAGAG+TGG - chr5.1:67179328-67179347 MS.gene81637:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 67178771 67182293 67178771 ID=MS.gene81637
chr5.1 mRNA 67178771 67182293 67178771 ID=MS.gene81637.t1;Parent=MS.gene81637
chr5.1 exon 67182207 67182293 67182207 ID=MS.gene81637.t1.exon1;Parent=MS.gene81637.t1
chr5.1 CDS 67182207 67182293 67182207 ID=cds.MS.gene81637.t1;Parent=MS.gene81637.t1
chr5.1 exon 67181417 67181536 67181417 ID=MS.gene81637.t1.exon2;Parent=MS.gene81637.t1
chr5.1 CDS 67181417 67181536 67181417 ID=cds.MS.gene81637.t1;Parent=MS.gene81637.t1
chr5.1 exon 67181044 67181124 67181044 ID=MS.gene81637.t1.exon3;Parent=MS.gene81637.t1
chr5.1 CDS 67181044 67181124 67181044 ID=cds.MS.gene81637.t1;Parent=MS.gene81637.t1
chr5.1 exon 67180325 67180379 67180325 ID=MS.gene81637.t1.exon4;Parent=MS.gene81637.t1
chr5.1 CDS 67180325 67180379 67180325 ID=cds.MS.gene81637.t1;Parent=MS.gene81637.t1
chr5.1 exon 67178771 67178934 67178771 ID=MS.gene81637.t1.exon5;Parent=MS.gene81637.t1
chr5.1 CDS 67178771 67178934 67178771 ID=cds.MS.gene81637.t1;Parent=MS.gene81637.t1
Gene Sequence

>MS.gene81637

ATGTCTTGTGAAGCTTCCACTCCAACTCCTGCTTCCAATGTTGAGGAAGACAAGAAACCCAAGTTCTTCTCACACATCAAATCGAAGGTCCAAGGGCAAATTCGTTTTTCTCTTTTTACGTGTATATCAATTTTATGTGTTGAATTTTTTGATTTATGTATTTTTGTTCTTTTTGGTTTTCATTATTGTTTTGATTCCTCTAATCAAAGTAATCCTTGAAATTTATGTGTATTAAATGTTTTTGTTAGATAGAAGACTATTATATTTGAGTGTGAGAATATAAGTCTAGGGTTTATCATTTTTTTATAGTTTCTGTATTTAAGTTATAGAATTCAATGTACAATCACTTATTAGGTCAAACCCCAAGAAAAACCTGAAATTGGATAGTTATTACAAGCTCACAGATCTTTGATGTATTGGTTCATTTGCATGTGCCAATTTTTTTTCTGCAATTTTTGGCATGGAGCGGAGTTTACCTTTTTCAATTGGATTCTTTTAGGCTACAAGTAGGATCATAAAAGTATTCTAAGGATAAGAATTAACATTTGTTTTCCAATGCAAGGGTGCAGCGGAAGAGTGGTAAAAAATATTTGGGAAACAACATTAGCAGTTGGATAGACAATTCATGTAAGTCCAAGGCAAAGCAAAAAAACTCAGATGAAGTTGACTTACTAGTTTTTTACTTTGCACCAGTCCTACTTTTTAGTTTTTTACTTTTAGAACATATTTCTCAAAAGAAGATGATTTTGATTCACAGGGTTGCATTTGCTCTGCGTGTTACAAGACTTCTAAAGATGAGAAAATCACATTCAATGGGACATCTATTTCTAAGAAAAATCTTGAAAAAACAAATAAAGATGAAGTACTTGAAGAACCGGTAAGTTTTACGATCCATTACTATATAATTCAGCTTGATATAGAGAAATTTAAACTAACTCTTTATGACTGTTGTTTCTTCTTGTGGGTTGAATGCAATAAATACGAAAGATGGCAGCATCAAATATGTGCACTCTACAACAAGAAAGCAGATGTGGATTGTGGACTGCAGTGCTGAGTATATATGTCCTTTATGCCGCCTAAAATAAATAGAAAATGGAATGCATGTTCCCTCACTATAGGCTGCTAACTTTGGTGCTAAGAACTTGACATGAACTGTGCTATGTGACCAGTTAGAGAAAAGACTCTTCGAGCGTCTCATGCAAGAGAGAGGAAACTGGGAAAAAGTTGAAGGGAATGAGAAACTTGATGAGGTAATACCTAGAAATCCGCATGCATGTACATAAACTTCAAATATCTTAACATTTTCTTATTCTTATGTAAGCATGTAAATTGAAAATAGTAATAAATTAGTATCCTGTCTTTTTCTTATTCTTATGCATGTAAATTGAAGTTTGCTATTAAAATTATTGATCATTTTCATCCAAATTTATACTGGTTTGAAAATTCTAGATTCTTTACTTATGTGGCTTGAATTGCTGCAAAATTGTAGGTTTCAGTAGAAGAAAATCTTTTAATTAGAGACGTGCTATCTGTCGACAATCAATTCATACCTTAAATTGATTAAAAGATGTATCATGCTGAATGGCTCATAGGATTGTTAGCAGTAAAATGGTCTATGGTTAATCCAATACTCAATACTTTAAAAATGCATTTCAGATTAGTCTTCTTTACTCTCTTTTTTCTCGTGTTCATCCAATTTCTACTTAAACATTTCTTGATCATCCAATTTCTGATTGCTGTTCACATTTGTTGATTATTAACTTATGGATTCATAATTTAAGTAGCTTCTGATAAATCGAGAAGATGCTTGCCAAGGGTTGTCATCTTGGTGGGAATACAATTCGTCAGTTGTCTCAAACATTTTGCGAAAGAGATGTTTTGATGAATTAAGAAATCAACTAGGATTCTCCACAGACTGGCGGTATCATCCTGAAATTGTATGCAACCGTTGTTCAACAAGAAGAAAAATGTAAGTGAAAGTGATTTAATTTTCACTTCAAAGGTATGTTCCTTGAATTGTGTCTAAGCATTGAAGTACTATTAAAATATGAAAGTCAATAAAAATCTACTCCGGTAATAGATTATTAATATACCGTTTGAATTTTTTTTCTTTAAATCATAAAGATTTAATTTAATAAAAATTTACAAATATGCCTAATATCAGTTGTTATAATAAAAATAATTATTGACCAAAAAAGCTAAAAAAATAATTTTATTTAAAATTTTAAAGCAATAAATTCCTTTTATTGAATAATTTATTAAATAAAAACACAATCTCAATCTAAATTACAAAATTACACGTCACCGAAATACACATTATATAAGAATTGTTCCATCTCTCTCTCTATATGTGTCTCCACCTCTCTCTCCTTTCTCATTTTGGTTCTTGTGCAACCATGCGTCCACCAATGATGAAAGTTAATTATTCTTCCTTTTAATGAATAGTTAACTCTCTTCATCGGTGGACGCATGGTTGCACAAGAACCAAAATGAGAGAGGTTGAGACACAGATAGAGAGAGATAAGATCGTTCTTATATAATGTGTATTCTGGTGACGTGTAATTTCATAATTTGGATTGAAATTTTATTTTTATTCAATAAATTATTCAATAAAAGGGATATATTGCTTTAAAATTCTAAAATAAAATTATTCTTAGTTTGTTTTGTCAATAATTTTTTTTATTATAACAACCAATATTAGACATATTTGTAAATTTTTATTAAATTAAATCTTTATCATTTAAAAAAATTGAACGATATATATTAATAATCTAGTACCGGAATAGATTGTTTTTGACTTTCATATTTTAATATATTTCAGATGTCATACCGCTGACGCACACACTTCAATTAAAAATGAGGTCCATCCACTTTGTGATGTAACAGTCTAAACCTAAAGTTAAGTTCATATGATTTTCTCACCATTAGTAGTTCCATGCAAATTAGTATAATCTTTGAATTTTATGTCGTTTTCAAGTCTTTGTGATTGATATCCCCTTCAACAATCAACAGTATGATATCATCCTTGAAAATGCATTATTTGAAAATAGAAATAACTTTCTGAGCTTCTGCCCGAAGAATCATTTCCCGCCACGCCAAATATTCCTCAATGATGAACCTCTATCATCTAAAGAATACTATTCTGCAGACAGTTTGAAAATTATGTGATAATTGTTGTCCAGAATATAAGGAGAGAGATACTGATTGCCATCAACACAAGTTGAATCAAGACGAGTTAAATCAAAAACCGGTGCTGGTAAGAACACAGTTATCTCTCGAGCTTTATAGTTTTCATTAATTGTTTGCTACGGATTGTAGTTCAAAATTCACTTTATAAATTTTATATTCCCTACACACAGATGGTGAACTGCTGAACATTTTGAAGCATGCATCTCAATGCCGCGCAACTAAGGCTGAACCATGCTCTCGTCCATACTGTTCTCAAATCAAGAAGTTGTTCTCTCATGCTAGTAAATGCAAAATTCGAGTGAATTGGGGCTGCCAGCACCGAAAAAGATACTAA
Protein sequence

>MS.gene81637.t1

MSCEASTPTPASNVEEDKKPKFFSHIKSKGCICSACYKTSKDEKITFNGTSISKKNLEKTNKDEVLEEPLEKRLFERLMQERGNWEKVEGNEKLDETGGIILKLYATVVQQEEKYGELLNILKHASQCRATKAEPCSRPYCSQIKKLFSHASKCKIRVNWGCQHRKRY