AlfalfaGEDB | MS.gene81844

M. sativa cultivar XinJiangDaYe / MS.gene81844

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81844.t1	XP_024632961.1	95	317	16	0	1	317	1	317	3.60E-157	564.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81844.t1	Q9SZL8	29.3	259	165	7	50	308	72	312	2.1e-25	117.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81844.t1	A0A072TE13	87.5	311	24	1	1	311	1	296	1.5e-152	548.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene81844.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81844.t1	MTR_0558s0020	89.389	311	18	1	1	311	1	296	0.0	581
MS.gene81844.t1	MTR_1g083640	93.706	286	18	0	1	286	1	286	0.0	565
MS.gene81844.t1	MTR_8g446020	77.492	311	15	2	1	311	1	256	1.97e-171	476
MS.gene81844.t1	MTR_2g014100	88.142	253	21	2	1	252	1	245	1.20e-163	456
MS.gene81844.t1	MTR_6g090505	90.435	230	22	0	81	310	1	230	7.03e-156	441
MS.gene81844.t1	MTR_0337s0040	73.188	276	20	2	1	276	1	222	3.42e-138	390
MS.gene81844.t1	MTR_3g008240	83.945	218	20	1	1	218	1	203	4.70e-132	374
MS.gene81844.t1	MTR_4g040430	84.404	218	14	2	1	218	1	198	2.37e-131	372
MS.gene81844.t1	MTR_5g071590	86.885	183	21	1	1	183	1	180	5.76e-117	335
MS.gene81844.t1	MTR_1g055240	94.366	142	8	0	107	248	3	144	6.77e-98	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81844.t1	AT4G38180	28.413	271	169	6	50	316	72	321	3.59e-26	109
MS.gene81844.t1	AT5G28530	25.185	270	168	7	56	313	60	307	7.51e-16	78.6
MS.gene81844.t1	AT5G28530	25.185	270	168	7	56	313	60	307	7.51e-16	78.6
MS.gene81844.t1	AT5G28530	25.185	270	168	7	56	313	60	307	7.67e-16	78.6
MS.gene81844.t1	AT1G10240	23.320	253	170	7	65	312	62	295	7.62e-14	72.8
MS.gene81844.t1	AT1G10240	23.320	253	170	7	65	312	62	295	7.62e-14	72.8
MS.gene81844.t1	AT4G15090	24.498	249	167	6	66	313	66	294	1.65e-11	65.5
MS.gene81844.t1	AT4G15090	24.498	249	167	6	66	313	66	294	1.65e-11	65.5
MS.gene81844.t1	AT4G15090	24.498	249	167	6	66	313	66	294	1.65e-11	65.5
MS.gene81844.t1	AT4G15090	24.498	249	167	6	66	313	66	294	1.65e-11	65.5

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Find 41 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	6.4:+53874644	MS.gene81844:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	6.4:+53875244	MS.gene81844:CDS
ACAAAACAAGAAATCTGATA+AGG	0.511435	6.4:+53874598	MS.gene81844:CDS
ACATCAACTTCATCTGATAG+TGG	0.459514	6.4:+53874344	MS.gene81844:CDS
ACCGAACAAACAATAAATAT+CGG	0.389395	6.4:+53875236	MS.gene81844:CDS
ACCTGTGGACTGTCTGTTGT+TGG	0.465317	6.4:-53874692	None:intergenic
AGAACGTCTTATGAAGTTAT+GGG	0.466325	6.4:+53874947	MS.gene81844:CDS
AGCTGGAATATATTTGAAGC+TGG	0.507410	6.4:+53874766	MS.gene81844:CDS
ATGTGTATAAGATATATAGA+TGG	0.452819	6.4:+53874801	MS.gene81844:CDS
CAACTAGATTATTCTCTATT+CGG	0.323831	6.4:+53875187	MS.gene81844:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCCTAAACAAACAACA+TGG	-	chr6.4:53875413-53875432	None:intergenic	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	+	chr6.4:53874644-53874663	MS.gene81844:CDS	30.0%
AACAATAAATATCGGCCATT+AGG	+	chr6.4:53875244-53875263	MS.gene81844:CDS	30.0%
AGAACGTCTTATGAAGTTAT+GGG	+	chr6.4:53874947-53874966	MS.gene81844:CDS	30.0%
CGTTATGTTTGTAACAAAGA+AGG	+	chr6.4:53874632-53874651	MS.gene81844:CDS	30.0%
CTTACTTATTTGAACTACAC+GGG	+	chr6.4:53875382-53875401	MS.gene81844:intron	30.0%
GCCGATATTTATTGTTTGTT+CGG	-	chr6.4:53875240-53875259	None:intergenic	30.0%
GGTAATTATGCATATAACAC+TGG	+	chr6.4:53874536-53874555	MS.gene81844:CDS	30.0%
GTTTACTTAATCCTAACAAC+AGG	+	chr6.4:53874669-53874688	MS.gene81844:CDS	30.0%
TAACAAAGAAGGTTTCAAGA+AGG	+	chr6.4:53874643-53874662	MS.gene81844:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	53874335	53875533	53874335	ID=MS.gene81844
chr6.4	mRNA	53874335	53875533	53874335	ID=MS.gene81844.t1;Parent=MS.gene81844
chr6.4	exon	53874335	53875265	53874335	ID=MS.gene81844.t1.exon1;Parent=MS.gene81844.t1
chr6.4	CDS	53874335	53875265	53874335	ID=cds.MS.gene81844.t1;Parent=MS.gene81844.t1
chr6.4	exon	53875505	53875533	53875505	ID=MS.gene81844.t1.exon2;Parent=MS.gene81844.t1
chr6.4	CDS	53875505	53875533	53875505	ID=cds.MS.gene81844.t1;Parent=MS.gene81844.t1

Gene Sequence

>MS.gene81844

ATGGATTTGACATCAACTTCATCTGATAGTGGACAACTGAGTGTTGAAACTTCATCACTGATTCATGCTGAGAGTGGACAATTGAGTGTTACTCCCCTAGCAATGATTCATGCTGACAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAACAAGAAATCTGATAAGGTACATTATTTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTTTACTTAATCCTAACAACAGGCCAACAACAGACAGTCCACAGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGATCACTGTCATCCATTACATAAACCAGAGCATTCGTGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAGGGAGTTGGAGGCACAGAGAATCTTCCTTTTCGGTTTTCAGACTTAAAGAACTATCTAATGACAATTCGTCAAAAAGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGCCCTCTCGAAACCATCTTTTTACTATGATATTCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGTCAGATGGAATTATGCAACTAGATTATTCTCTATTCGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTGTTTTTTACTTCTCTCAGGTTTTAAATTATTGTTTAATTTCATTAAGTTGTTCTGGCATGTGTATTATAAGTAGCAGTACATTTTGAACTGCCTAGGATTGACTATAGGTCTTACTTATTTGAACTACACGGGTTTAACCATGTTGTTTGTTTAGGGATTTTCTCGCTTCTGCCATTTGGTTTGAGACAAACTTAAATGATGTTGATTGAAATTTATATTTTGAACTGCCTAGGCATTTTGTCTTGTGTGATCGAACTTTAG

Protein sequence

>MS.gene81844.t1

MDLTSTSSDSGQLSVETSSLIHAESGQLSVTPLAMIHADSSQCYSPSNKESWKSLVFQSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSDKVHYLRYVCNKEGFKKGSLLNPNNRPTTDSPQVIEFVKVKEKPEERVGCKAGIYLKLDEVLNVYKIYRWDVDHCHPLHKPEHSCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTIRQKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWSDGIMQLDYSLFGDVISFDTTYRTNNKYRPLGILSCVIEL