Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81844.t1 | XP_024632961.1 | 95 | 317 | 16 | 0 | 1 | 317 | 1 | 317 | 3.60E-157 | 564.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81844.t1 | Q9SZL8 | 29.3 | 259 | 165 | 7 | 50 | 308 | 72 | 312 | 2.1e-25 | 117.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81844.t1 | A0A072TE13 | 87.5 | 311 | 24 | 1 | 1 | 311 | 1 | 296 | 1.5e-152 | 548.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene81844.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81844.t1 | MTR_0558s0020 | 89.389 | 311 | 18 | 1 | 1 | 311 | 1 | 296 | 0.0 | 581 |
MS.gene81844.t1 | MTR_1g083640 | 93.706 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 0.0 | 565 |
MS.gene81844.t1 | MTR_8g446020 | 77.492 | 311 | 15 | 2 | 1 | 311 | 1 | 256 | 1.97e-171 | 476 |
MS.gene81844.t1 | MTR_2g014100 | 88.142 | 253 | 21 | 2 | 1 | 252 | 1 | 245 | 1.20e-163 | 456 |
MS.gene81844.t1 | MTR_6g090505 | 90.435 | 230 | 22 | 0 | 81 | 310 | 1 | 230 | 7.03e-156 | 441 |
MS.gene81844.t1 | MTR_0337s0040 | 73.188 | 276 | 20 | 2 | 1 | 276 | 1 | 222 | 3.42e-138 | 390 |
MS.gene81844.t1 | MTR_3g008240 | 83.945 | 218 | 20 | 1 | 1 | 218 | 1 | 203 | 4.70e-132 | 374 |
MS.gene81844.t1 | MTR_4g040430 | 84.404 | 218 | 14 | 2 | 1 | 218 | 1 | 198 | 2.37e-131 | 372 |
MS.gene81844.t1 | MTR_5g071590 | 86.885 | 183 | 21 | 1 | 1 | 183 | 1 | 180 | 5.76e-117 | 335 |
MS.gene81844.t1 | MTR_1g055240 | 94.366 | 142 | 8 | 0 | 107 | 248 | 3 | 144 | 6.77e-98 | 285 |
MS.gene81844.t1 | MTR_0019s0290 | 88.889 | 153 | 14 | 1 | 100 | 249 | 8 | 160 | 7.07e-97 | 283 |
MS.gene81844.t1 | MTR_1281s0010 | 95.413 | 109 | 5 | 0 | 35 | 143 | 1 | 109 | 1.86e-72 | 219 |
MS.gene81844.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 5.55e-40 | 140 |
MS.gene81844.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 1.13e-37 | 142 |
MS.gene81844.t1 | MTR_6g051425 | 30.522 | 249 | 158 | 4 | 56 | 304 | 22 | 255 | 3.47e-32 | 122 |
MS.gene81844.t1 | MTR_1g070355 | 24.919 | 309 | 207 | 7 | 3 | 307 | 24 | 311 | 1.65e-22 | 98.2 |
MS.gene81844.t1 | MTR_0337s0050 | 70.213 | 47 | 11 | 1 | 275 | 318 | 14 | 60 | 7.83e-16 | 71.6 |
MS.gene81844.t1 | MTR_0402s0040 | 25.946 | 185 | 118 | 4 | 65 | 249 | 40 | 205 | 2.58e-14 | 73.6 |
MS.gene81844.t1 | MTR_1g013060 | 30.093 | 216 | 132 | 8 | 56 | 269 | 29 | 227 | 3.89e-14 | 70.9 |
MS.gene81844.t1 | MTR_4g035820 | 23.194 | 263 | 177 | 5 | 56 | 313 | 80 | 322 | 2.78e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81844.t1 | AT4G38180 | 28.413 | 271 | 169 | 6 | 50 | 316 | 72 | 321 | 3.59e-26 | 109 |
MS.gene81844.t1 | AT5G28530 | 25.185 | 270 | 168 | 7 | 56 | 313 | 60 | 307 | 7.51e-16 | 78.6 |
MS.gene81844.t1 | AT5G28530 | 25.185 | 270 | 168 | 7 | 56 | 313 | 60 | 307 | 7.51e-16 | 78.6 |
MS.gene81844.t1 | AT5G28530 | 25.185 | 270 | 168 | 7 | 56 | 313 | 60 | 307 | 7.67e-16 | 78.6 |
MS.gene81844.t1 | AT1G10240 | 23.320 | 253 | 170 | 7 | 65 | 312 | 62 | 295 | 7.62e-14 | 72.8 |
MS.gene81844.t1 | AT1G10240 | 23.320 | 253 | 170 | 7 | 65 | 312 | 62 | 295 | 7.62e-14 | 72.8 |
MS.gene81844.t1 | AT4G15090 | 24.498 | 249 | 167 | 6 | 66 | 313 | 66 | 294 | 1.65e-11 | 65.5 |
MS.gene81844.t1 | AT4G15090 | 24.498 | 249 | 167 | 6 | 66 | 313 | 66 | 294 | 1.65e-11 | 65.5 |
MS.gene81844.t1 | AT4G15090 | 24.498 | 249 | 167 | 6 | 66 | 313 | 66 | 294 | 1.65e-11 | 65.5 |
MS.gene81844.t1 | AT4G15090 | 24.498 | 249 | 167 | 6 | 66 | 313 | 66 | 294 | 1.65e-11 | 65.5 |
MS.gene81844.t1 | AT4G15090 | 24.498 | 249 | 167 | 6 | 66 | 313 | 66 | 294 | 1.65e-11 | 65.5 |
MS.gene81844.t1 | AT1G76320 | 23.485 | 264 | 166 | 8 | 57 | 316 | 3 | 234 | 7.52e-11 | 63.5 |
MS.gene81844.t1 | AT1G76320 | 23.485 | 264 | 166 | 8 | 57 | 316 | 3 | 234 | 7.92e-11 | 63.5 |
MS.gene81844.t1 | AT1G76320 | 23.485 | 264 | 166 | 8 | 57 | 316 | 3 | 234 | 7.92e-11 | 63.5 |
MS.gene81844.t1 | AT1G80010 | 25.940 | 266 | 156 | 10 | 57 | 310 | 101 | 337 | 8.26e-11 | 63.5 |
MS.gene81844.t1 | AT1G76320 | 23.485 | 264 | 166 | 8 | 57 | 316 | 3 | 234 | 8.66e-11 | 63.2 |
Find 41 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 6.4:-53874680 | None:intergenic |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 6.4:-53874871 | None:intergenic |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 6.4:+53875187 | MS.gene81844:CDS |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6.4:-53875237 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 6.4:+53875244 | MS.gene81844:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6.4:+53875236 | MS.gene81844:CDS |
GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 6.4:+53874946 | MS.gene81844:CDS |
GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 6.4:+53874952 | MS.gene81844:CDS |
GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 6.4:+53874959 | MS.gene81844:CDS |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 6.4:+53874632 | MS.gene81844:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6.4:+53874884 | MS.gene81844:CDS |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 6.4:-53874469 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 6.4:-53874470 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6.4:+53874749 | MS.gene81844:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 6.4:+53874801 | MS.gene81844:CDS |
ACATCAACTTCATCTGATAG+TGG | 0.459514 | 6.4:+53874344 | MS.gene81844:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 6.4:+53874914 | MS.gene81844:CDS |
ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 6.4:-53874692 | None:intergenic |
AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 6.4:+53874947 | MS.gene81844:CDS |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 6.4:+53874669 | MS.gene81844:CDS |
TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 6.4:-53874998 | None:intergenic |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 6.4:+53874468 | MS.gene81844:CDS |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 6.4:-53874743 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 6.4:+53874766 | MS.gene81844:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 6.4:+53874598 | MS.gene81844:CDS |
CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 6.4:-53874854 | None:intergenic |
GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 6.4:-53874429 | None:intergenic |
GGTAATTATGCATATAACAC+TGG | 0.523547 | 6.4:+53874536 | MS.gene81844:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 6.4:+53874643 | MS.gene81844:CDS |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 6.4:+53874808 | MS.gene81844:CDS |
GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 6.4:-53874842 | None:intergenic |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 6.4:-53874468 | None:intergenic |
TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 6.4:-53874430 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6.4:+53874644 | MS.gene81844:CDS |
GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 6.4:+53874962 | MS.gene81844:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 6.4:+53874802 | MS.gene81844:CDS |
TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 6.4:+53874389 | MS.gene81844:CDS |
TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 6.4:+53874953 | MS.gene81844:CDS |
GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 6.4:+53874691 | MS.gene81844:CDS |
TTCACAAACTCAATAACCTG+TGG | 0.626760 | 6.4:-53874707 | None:intergenic |
TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 6.4:-53874428 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTGTATAAGATATATAGA+TGG | + | chr6.4:53874801-53874820 | MS.gene81844:CDS | 20.0% |
!! | TGAATATCATAGTAAAAAGA+TGG | - | chr6.4:53875115-53875134 | None:intergenic | 20.0% |
!! | TGTGTATAAGATATATAGAT+GGG | + | chr6.4:53874802-53874821 | MS.gene81844:CDS | 20.0% |
!!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr6.4:53874515-53874534 | MS.gene81844:CDS | 20.0% |
!!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr6.4:53875305-53875324 | MS.gene81844:intron | 20.0% |
! | ACAAAACAAGAAATCTGATA+AGG | + | chr6.4:53874598-53874617 | MS.gene81844:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr6.4:53875236-53875255 | MS.gene81844:CDS | 25.0% |
! | AGTAAAAAACACTAACCTAA+TGG | - | chr6.4:53875262-53875281 | None:intergenic | 25.0% |
! | CAACTAGATTATTCTCTATT+CGG | + | chr6.4:53875187-53875206 | MS.gene81844:CDS | 25.0% |
! | TCTTACTTATTTGAACTACA+CGG | + | chr6.4:53875381-53875400 | MS.gene81844:intron | 25.0% |
!! | ATAACACTGGATTTTCTATT+AGG | + | chr6.4:53874549-53874568 | MS.gene81844:CDS | 25.0% |
!! | TTAACCATGTTGTTTGTTTA+GGG | + | chr6.4:53875406-53875425 | MS.gene81844:intron | 25.0% |
!! | TTTAACCATGTTGTTTGTTT+AGG | + | chr6.4:53875405-53875424 | MS.gene81844:intron | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr6.4:53875149-53875168 | MS.gene81844:CDS | 25.0% |
!!! | ATTTATATTTTGAACTGCCT+AGG | + | chr6.4:53875483-53875502 | MS.gene81844:intron | 25.0% |
AAATCCCTAAACAAACAACA+TGG | - | chr6.4:53875413-53875432 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr6.4:53874644-53874663 | MS.gene81844:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr6.4:53875244-53875263 | MS.gene81844:CDS | 30.0% | |
AGAACGTCTTATGAAGTTAT+GGG | + | chr6.4:53874947-53874966 | MS.gene81844:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr6.4:53874632-53874651 | MS.gene81844:CDS | 30.0% | |
CTTACTTATTTGAACTACAC+GGG | + | chr6.4:53875382-53875401 | MS.gene81844:intron | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr6.4:53875240-53875259 | None:intergenic | 30.0% | |
GGTAATTATGCATATAACAC+TGG | + | chr6.4:53874536-53874555 | MS.gene81844:CDS | 30.0% | |
GTTTACTTAATCCTAACAAC+AGG | + | chr6.4:53874669-53874688 | MS.gene81844:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr6.4:53874643-53874662 | MS.gene81844:CDS | 30.0% | |
TAAGATATATAGATGGGATG+TGG | + | chr6.4:53874808-53874827 | MS.gene81844:CDS | 30.0% | |
TAAGTTTGTCTCAAACCAAA+TGG | - | chr6.4:53875447-53875466 | None:intergenic | 30.0% | |
TCCATGATTCTTTATTGCTA+GGG | - | chr6.4:53874472-53874491 | None:intergenic | 30.0% | |
TTACTTCTCGAAATGATCTA+AGG | - | chr6.4:53874874-53874893 | None:intergenic | 30.0% | |
TTCCATGATTCTTTATTGCT+AGG | - | chr6.4:53874473-53874492 | None:intergenic | 30.0% | |
TTTAAGTCTGAAAACCGAAA+AGG | - | chr6.4:53875001-53875020 | None:intergenic | 30.0% | |
!! | GCTCTTATAAATTCTAAAGC+TGG | + | chr6.4:53874914-53874933 | MS.gene81844:CDS | 30.0% |
!!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr6.4:53875268-53875287 | MS.gene81844:intron | 30.0% |
AATTCGTCAAAAAGAGATGG+TGG | + | chr6.4:53875036-53875055 | MS.gene81844:CDS | 35.0% | |
ACATCAACTTCATCTGATAG+TGG | + | chr6.4:53874344-53874363 | MS.gene81844:CDS | 35.0% | |
AGTAAAAAGATGGTTTCGAG+AGG | - | chr6.4:53875105-53875124 | None:intergenic | 35.0% | |
CCATGATTCTTTATTGCTAG+GGG | - | chr6.4:53874471-53874490 | None:intergenic | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr6.4:53874884-53874903 | MS.gene81844:CDS | 35.0% | |
GAAAGAAAAACCTGAGGAAA+GGG | + | chr6.4:53874733-53874752 | MS.gene81844:CDS | 35.0% | |
GAAAGTGAAAGAAAAACCTG+AGG | + | chr6.4:53874727-53874746 | MS.gene81844:CDS | 35.0% | |
GACAATTCGTCAAAAAGAGA+TGG | + | chr6.4:53875033-53875052 | MS.gene81844:CDS | 35.0% | |
GAGAACGTCTTATGAAGTTA+TGG | + | chr6.4:53874946-53874965 | MS.gene81844:CDS | 35.0% | |
GTAAAAAGATGGTTTCGAGA+GGG | - | chr6.4:53875104-53875123 | None:intergenic | 35.0% | |
TAAGACCTATAGTCAATCCT+AGG | - | chr6.4:53875366-53875385 | None:intergenic | 35.0% | |
TCTTATGAAGTTATGGGTCA+GGG | + | chr6.4:53874953-53874972 | MS.gene81844:CDS | 35.0% | |
TGAAAGAAAAACCTGAGGAA+AGG | + | chr6.4:53874732-53874751 | MS.gene81844:CDS | 35.0% | |
TTCACAAACTCAATAACCTG+TGG | - | chr6.4:53874710-53874729 | None:intergenic | 35.0% | |
! | AGCTGGAATATATTTGAAGC+TGG | + | chr6.4:53874766-53874785 | MS.gene81844:CDS | 35.0% |
! | GAATGCTCTGGTTTATGTAA+TGG | - | chr6.4:53874845-53874864 | None:intergenic | 35.0% |
!!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr6.4:53875157-53875176 | MS.gene81844:CDS | 35.0% |
AACTGCCTAGGATTGACTAT+AGG | + | chr6.4:53875358-53875377 | MS.gene81844:intron | 40.0% | |
CCCCTAGCAATAAAGAATCA+TGG | + | chr6.4:53874468-53874487 | MS.gene81844:CDS | 40.0% | |
GTCAGCATGAATCATTGCTA+GGG | - | chr6.4:53874432-53874451 | None:intergenic | 40.0% | |
GTCTTATGAAGTTATGGGTC+AGG | + | chr6.4:53874952-53874971 | MS.gene81844:CDS | 40.0% | |
TCACACAAGACAAAATGCCT+AGG | - | chr6.4:53875503-53875522 | None:intergenic | 40.0% | |
TCAGCATGAATCATTGCTAG+GGG | - | chr6.4:53874431-53874450 | None:intergenic | 40.0% | |
TGTCAGCATGAATCATTGCT+AGG | - | chr6.4:53874433-53874452 | None:intergenic | 40.0% | |
! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr6.4:53875429-53875448 | MS.gene81844:intron | 40.0% |
! | CAGTACATTTTGAACTGCCT+AGG | + | chr6.4:53875346-53875365 | MS.gene81844:intron | 40.0% |
! | GCACAGAGAATCTTCCTTTT+CGG | + | chr6.4:53874984-53875003 | MS.gene81844:CDS | 40.0% |
CTAAGGTAACACGAATGCTC+TGG | - | chr6.4:53874857-53874876 | None:intergenic | 45.0% | |
GAAAAACCTGAGGAAAGGGT+TGG | + | chr6.4:53874737-53874756 | MS.gene81844:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+AGG | - | chr6.4:53874746-53874765 | None:intergenic | 45.0% | |
! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr6.4:53875040-53875059 | MS.gene81844:CDS | 45.0% |
! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr6.4:53874683-53874702 | None:intergenic | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr6.4:53874749-53874768 | MS.gene81844:CDS | 45.0% |
!! | TCACTGATTCATGCTGAGAG+TGG | + | chr6.4:53874389-53874408 | MS.gene81844:CDS | 45.0% |
GAAGTTATGGGTCAGGGAGT+TGG | + | chr6.4:53874959-53874978 | MS.gene81844:CDS | 50.0% | |
! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr6.4:53874695-53874714 | None:intergenic | 50.0% |
GCCAACAACAGACAGTCCAC+AGG | + | chr6.4:53874691-53874710 | MS.gene81844:CDS | 55.0% | |
GTTATGGGTCAGGGAGTTGG+AGG | + | chr6.4:53874962-53874981 | MS.gene81844:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 53874335 | 53875533 | 53874335 | ID=MS.gene81844 |
chr6.4 | mRNA | 53874335 | 53875533 | 53874335 | ID=MS.gene81844.t1;Parent=MS.gene81844 |
chr6.4 | exon | 53874335 | 53875265 | 53874335 | ID=MS.gene81844.t1.exon1;Parent=MS.gene81844.t1 |
chr6.4 | CDS | 53874335 | 53875265 | 53874335 | ID=cds.MS.gene81844.t1;Parent=MS.gene81844.t1 |
chr6.4 | exon | 53875505 | 53875533 | 53875505 | ID=MS.gene81844.t1.exon2;Parent=MS.gene81844.t1 |
chr6.4 | CDS | 53875505 | 53875533 | 53875505 | ID=cds.MS.gene81844.t1;Parent=MS.gene81844.t1 |
Gene Sequence |
Protein sequence |