Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81882.t1 | XP_024632961.1 | 81 | 637 | 58 | 2 | 1 | 574 | 81 | 717 | 2.30E-303 | 1050.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81882.t1 | Q9SZL8 | 27.5 | 559 | 362 | 10 | 6 | 546 | 104 | 637 | 1.5e-61 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81882.t1 | D3YBB9 | 76.0 | 625 | 98 | 2 | 2 | 574 | 114 | 738 | 6.7e-281 | 975.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81882.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81882.t1 | MTR_0558s0020 | 87.879 | 231 | 28 | 0 | 1 | 231 | 66 | 296 | 5.36e-152 | 438 |
| MS.gene81882.t1 | MTR_6g090505 | 82.700 | 237 | 41 | 0 | 1 | 237 | 1 | 237 | 1.20e-141 | 414 |
| MS.gene81882.t1 | MTR_6g090505 | 56.548 | 168 | 35 | 4 | 332 | 496 | 230 | 362 | 4.62e-47 | 169 |
| MS.gene81882.t1 | MTR_1g083640 | 89.216 | 204 | 22 | 0 | 1 | 204 | 81 | 284 | 4.19e-135 | 395 |
| MS.gene81882.t1 | MTR_8g446020 | 78.947 | 228 | 48 | 0 | 4 | 231 | 29 | 256 | 4.31e-130 | 381 |
| MS.gene81882.t1 | MTR_2g014100 | 86.628 | 172 | 23 | 0 | 1 | 172 | 74 | 245 | 8.07e-107 | 321 |
| MS.gene81882.t1 | MTR_0337s0040 | 77.083 | 192 | 44 | 0 | 4 | 195 | 30 | 221 | 2.86e-104 | 313 |
| MS.gene81882.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 27 | 168 | 3 | 144 | 1.89e-86 | 265 |
| MS.gene81882.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 18 | 169 | 9 | 160 | 1.32e-85 | 263 |
| MS.gene81882.t1 | MTR_3g008240 | 86.232 | 138 | 19 | 0 | 1 | 138 | 66 | 203 | 1.15e-80 | 252 |
| MS.gene81882.t1 | MTR_4g040430 | 84.783 | 138 | 17 | 1 | 1 | 138 | 65 | 198 | 2.85e-78 | 245 |
| MS.gene81882.t1 | MTR_0337s0060 | 62.944 | 197 | 26 | 2 | 383 | 565 | 21 | 184 | 5.02e-75 | 239 |
| MS.gene81882.t1 | MTR_5g071590 | 79.808 | 104 | 21 | 0 | 1 | 104 | 78 | 181 | 2.46e-56 | 188 |
| MS.gene81882.t1 | MTR_4g133495 | 76.316 | 114 | 24 | 1 | 464 | 574 | 95 | 208 | 5.57e-54 | 185 |
| MS.gene81882.t1 | MTR_4g133340 | 76.316 | 114 | 24 | 1 | 464 | 574 | 95 | 208 | 5.57e-54 | 185 |
| MS.gene81882.t1 | MTR_3g028680 | 84.211 | 76 | 12 | 0 | 499 | 574 | 1 | 76 | 1.75e-38 | 140 |
| MS.gene81882.t1 | MTR_6g051425 | 32.967 | 273 | 155 | 5 | 21 | 277 | 64 | 324 | 2.84e-36 | 139 |
| MS.gene81882.t1 | MTR_2g067090 | 81.944 | 72 | 13 | 0 | 502 | 573 | 99 | 170 | 9.20e-34 | 130 |
| MS.gene81882.t1 | MTR_1281s0010 | 80.952 | 63 | 12 | 0 | 1 | 63 | 47 | 109 | 2.93e-29 | 112 |
| MS.gene81882.t1 | MTR_1g070355 | 25.357 | 280 | 193 | 4 | 21 | 298 | 119 | 384 | 2.86e-15 | 79.3 |
| MS.gene81882.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 195 | 230 | 14 | 49 | 9.03e-14 | 67.0 |
| MS.gene81882.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.35e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81882.t1 | AT4G38180 | 28.073 | 545 | 349 | 10 | 20 | 546 | 118 | 637 | 7.83e-70 | 240 |
| MS.gene81882.t1 | AT4G15090 | 26.554 | 531 | 354 | 10 | 59 | 571 | 121 | 633 | 6.74e-58 | 207 |
| MS.gene81882.t1 | AT4G15090 | 26.554 | 531 | 354 | 10 | 59 | 571 | 121 | 633 | 6.74e-58 | 207 |
| MS.gene81882.t1 | AT4G15090 | 26.554 | 531 | 354 | 10 | 59 | 571 | 121 | 633 | 6.74e-58 | 207 |
| MS.gene81882.t1 | AT4G15090 | 26.554 | 531 | 354 | 10 | 59 | 571 | 121 | 633 | 6.74e-58 | 207 |
| MS.gene81882.t1 | AT4G15090 | 26.554 | 531 | 354 | 10 | 59 | 571 | 121 | 633 | 6.74e-58 | 207 |
| MS.gene81882.t1 | AT1G76320 | 26.471 | 544 | 341 | 13 | 19 | 543 | 41 | 544 | 5.04e-50 | 184 |
| MS.gene81882.t1 | AT3G22170 | 24.468 | 564 | 356 | 14 | 5 | 543 | 100 | 618 | 1.12e-49 | 184 |
| MS.gene81882.t1 | AT3G22170 | 24.468 | 564 | 356 | 14 | 5 | 543 | 100 | 618 | 1.12e-49 | 184 |
| MS.gene81882.t1 | AT1G76320 | 26.471 | 544 | 341 | 13 | 19 | 543 | 41 | 544 | 1.15e-49 | 183 |
| MS.gene81882.t1 | AT1G76320 | 26.471 | 544 | 341 | 13 | 19 | 543 | 41 | 544 | 1.17e-49 | 183 |
| MS.gene81882.t1 | AT1G76320 | 26.471 | 544 | 341 | 13 | 19 | 543 | 41 | 544 | 1.17e-49 | 183 |
| MS.gene81882.t1 | AT2G27110 | 25.989 | 531 | 336 | 14 | 63 | 570 | 108 | 604 | 3.81e-49 | 183 |
| MS.gene81882.t1 | AT2G27110 | 25.989 | 531 | 336 | 14 | 63 | 570 | 108 | 604 | 3.81e-49 | 183 |
| MS.gene81882.t1 | AT2G27110 | 27.314 | 443 | 282 | 10 | 149 | 570 | 36 | 459 | 1.10e-48 | 180 |
| MS.gene81882.t1 | AT3G06250 | 27.336 | 428 | 272 | 10 | 135 | 542 | 295 | 703 | 2.28e-47 | 177 |
| MS.gene81882.t1 | AT3G06250 | 27.336 | 428 | 272 | 10 | 135 | 542 | 295 | 703 | 2.28e-47 | 177 |
| MS.gene81882.t1 | AT3G06250 | 27.336 | 428 | 272 | 10 | 135 | 542 | 295 | 703 | 2.28e-47 | 177 |
| MS.gene81882.t1 | AT4G38170 | 27.041 | 392 | 251 | 9 | 171 | 543 | 24 | 399 | 3.60e-47 | 173 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 106 | 526 | 5.45e-44 | 167 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 163 | 583 | 8.94e-44 | 167 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 163 | 583 | 8.94e-44 | 167 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 177 | 597 | 9.12e-44 | 167 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 163 | 583 | 9.32e-44 | 167 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 163 | 583 | 1.47e-43 | 166 |
| MS.gene81882.t1 | AT4G19990 | 28.311 | 438 | 275 | 10 | 155 | 570 | 163 | 583 | 1.47e-43 | 166 |
| MS.gene81882.t1 | AT5G18960 | 24.816 | 544 | 316 | 16 | 20 | 542 | 256 | 727 | 3.77e-43 | 165 |
| MS.gene81882.t1 | AT5G18960 | 24.816 | 544 | 316 | 16 | 20 | 542 | 256 | 727 | 3.77e-43 | 165 |
| MS.gene81882.t1 | AT1G10240 | 26.667 | 525 | 336 | 17 | 43 | 540 | 102 | 604 | 1.28e-42 | 162 |
| MS.gene81882.t1 | AT1G10240 | 26.667 | 525 | 336 | 17 | 43 | 540 | 102 | 604 | 1.28e-42 | 162 |
| MS.gene81882.t1 | AT5G28530 | 24.824 | 568 | 364 | 17 | 5 | 541 | 84 | 619 | 3.80e-40 | 155 |
| MS.gene81882.t1 | AT5G28530 | 24.648 | 568 | 361 | 18 | 5 | 541 | 84 | 615 | 2.24e-39 | 153 |
| MS.gene81882.t1 | AT5G28530 | 24.648 | 568 | 361 | 18 | 5 | 541 | 84 | 615 | 2.24e-39 | 153 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 27 | 517 | 1.16e-38 | 152 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.33e-38 | 151 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 27 | 517 | 1.34e-38 | 151 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.46e-38 | 152 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.46e-38 | 152 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.46e-38 | 152 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.76e-38 | 151 |
| MS.gene81882.t1 | AT2G32250 | 24.028 | 566 | 333 | 14 | 5 | 548 | 68 | 558 | 1.76e-38 | 151 |
| MS.gene81882.t1 | AT1G80010 | 24.783 | 577 | 353 | 21 | 4 | 543 | 129 | 661 | 1.96e-36 | 145 |
| MS.gene81882.t1 | AT1G52520 | 23.386 | 573 | 362 | 18 | 2 | 543 | 112 | 638 | 1.60e-32 | 133 |
| MS.gene81882.t1 | AT5G28530 | 22.401 | 558 | 327 | 20 | 5 | 541 | 84 | 556 | 1.62e-21 | 99.0 |
| MS.gene81882.t1 | AT5G28530 | 22.222 | 558 | 324 | 21 | 5 | 541 | 84 | 552 | 8.94e-21 | 96.7 |
Find 83 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6.4:-54725787 | MS.gene81882:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6.4:-54725520 | MS.gene81882:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 6.4:-54726068 | MS.gene81882:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6.4:-54726591 | MS.gene81882:CDS |
| CATCATAAGAGTGTGTTATT+TGG | 0.238083 | 6.4:-54726035 | MS.gene81882:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6.4:+54725941 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6.4:-54725746 | MS.gene81882:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6.4:+54725923 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6.4:+54726541 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 6.4:-54725487 | MS.gene81882:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 6.4:+54724931 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6.4:-54725646 | MS.gene81882:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6.4:-54726534 | MS.gene81882:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 6.4:-54725478 | MS.gene81882:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6.4:-54726542 | MS.gene81882:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6.4:-54725647 | MS.gene81882:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6.4:+54727071 | None:intergenic |
| GGACCGCATAAGCTGACTAT+TGG | 0.410008 | 6.4:+54725425 | None:intergenic |
| CATGTCGTATCTTTGAGAAC+CGG | 0.411671 | 6.4:-54725099 | MS.gene81882:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6.4:+54725176 | None:intergenic |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6.4:+54725175 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6.4:-54726894 | MS.gene81882:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6.4:-54727012 | MS.gene81882:CDS |
| GACCGCATAAGCTGACTATT+GGG | 0.435741 | 6.4:+54725426 | None:intergenic |
| GGGTTGTCATAGTCGACATT+AGG | 0.442905 | 6.4:-54725141 | MS.gene81882:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 6.4:-54726980 | MS.gene81882:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6.4:+54725930 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6.4:-54727029 | MS.gene81882:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6.4:+54724998 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 6.4:-54727146 | MS.gene81882:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6.4:-54726864 | MS.gene81882:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 6.4:-54725856 | MS.gene81882:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 6.4:+54726924 | None:intergenic |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 6.4:-54725692 | MS.gene81882:CDS |
| TCTAATTACGACTCGTCAAA+AGG | 0.463883 | 6.4:-54726751 | MS.gene81882:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 6.4:-54727180 | MS.gene81882:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.481907 | 6.4:+54726055 | None:intergenic |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 6.4:-54726819 | MS.gene81882:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6.4:+54727035 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 6.4:-54727186 | MS.gene81882:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6.4:-54725745 | MS.gene81882:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6.4:-54726738 | MS.gene81882:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6.4:-54725506 | MS.gene81882:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 6.4:-54726832 | MS.gene81882:CDS |
| TGTCTTCTGCAACATCAACT+TGG | 0.500580 | 6.4:+54726646 | None:intergenic |
| ATGTCGTATCTTTGAGAACC+GGG | 0.500884 | 6.4:-54725098 | MS.gene81882:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6.4:-54725659 | MS.gene81882:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6.4:-54725162 | MS.gene81882:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6.4:+54726780 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6.4:-54725641 | MS.gene81882:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6.4:+54725182 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 6.4:+54725538 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 6.4:-54726976 | MS.gene81882:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6.4:-54725161 | MS.gene81882:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 6.4:-54724941 | MS.gene81882:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 6.4:-54727135 | MS.gene81882:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 6.4:+54725543 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6.4:-54727134 | MS.gene81882:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 6.4:+54726936 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6.4:+54725910 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6.4:-54726684 | MS.gene81882:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 6.4:-54726816 | MS.gene81882:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 6.4:+54725404 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 6.4:-54726825 | MS.gene81882:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 6.4:-54725924 | MS.gene81882:CDS |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 6.4:-54725192 | MS.gene81882:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 6.4:+54724907 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 6.4:-54726831 | MS.gene81882:CDS |
| TACGACTCGTCAAAAGGAGA+TGG | 0.606727 | 6.4:-54726745 | MS.gene81882:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.615895 | 6.4:-54726742 | MS.gene81882:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 6.4:+54725690 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6.4:+54727086 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 6.4:-54726811 | MS.gene81882:CDS |
| ATCCCAATAGTCAGCTTATG+CGG | 0.628481 | 6.4:-54725428 | MS.gene81882:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6.4:+54725177 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6.4:-54725855 | MS.gene81882:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6.4:-54725505 | MS.gene81882:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 6.4:-54726977 | MS.gene81882:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6.4:+54724956 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 6.4:+54725384 | None:intergenic |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 6.4:+54725080 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 6.4:-54725928 | MS.gene81882:CDS |
| TGTCGTATCTTTGAGAACCG+GGG | 0.676199 | 6.4:-54725097 | MS.gene81882:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr6.4:54724900-54724919 | MS.gene81882:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr6.4:54725106-54725125 | MS.gene81882:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr6.4:54725727-54725746 | MS.gene81882:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr6.4:54726369-54726388 | MS.gene81882:intron | 20.0% |
| !!! | TGAAATTTGAATGAATGTTT+TGG | - | chr6.4:54725617-54725636 | MS.gene81882:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr6.4:54725699-54725718 | MS.gene81882:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr6.4:54726207-54726226 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr6.4:54724906-54724925 | MS.gene81882:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr6.4:54725544-54725563 | MS.gene81882:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr6.4:54725570-54725589 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr6.4:54725109-54725128 | MS.gene81882:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr6.4:54726566-54726585 | MS.gene81882:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr6.4:54726705-54726724 | None:intergenic | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr6.4:54725110-54725129 | MS.gene81882:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr6.4:54726299-54726318 | MS.gene81882:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr6.4:54725719-54725738 | MS.gene81882:CDS | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | - | chr6.4:54726799-54726818 | MS.gene81882:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr6.4:54725989-54726008 | MS.gene81882:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr6.4:54725457-54725476 | MS.gene81882:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr6.4:54725458-54725477 | MS.gene81882:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr6.4:54726840-54726859 | MS.gene81882:CDS | 25.0% |
| !!! | ATGTTTTGGTTTAGAATTGA+AGG | - | chr6.4:54725631-54725650 | MS.gene81882:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr6.4:54724896-54724915 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr6.4:54725222-54725241 | MS.gene81882:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr6.4:54726373-54726392 | MS.gene81882:intron | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr6.4:54726841-54726860 | MS.gene81882:CDS | 25.0% |
| !!! | TTCAAGATTTTAGAGTTCTT+AGG | - | chr6.4:54727031-54727050 | MS.gene81882:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr6.4:54725790-54725809 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr6.4:54724952-54724971 | MS.gene81882:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr6.4:54725552-54725571 | MS.gene81882:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr6.4:54726340-54726359 | MS.gene81882:intron | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr6.4:54725255-54725274 | MS.gene81882:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr6.4:54726341-54726360 | MS.gene81882:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr6.4:54726034-54726053 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr6.4:54726912-54726931 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr6.4:54725495-54725514 | MS.gene81882:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr6.4:54725757-54725776 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr6.4:54725656-54725675 | MS.gene81882:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr6.4:54726255-54726274 | MS.gene81882:intron | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr6.4:54726913-54726932 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr6.4:54725548-54725567 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr6.4:54725041-54725060 | MS.gene81882:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr6.4:54726551-54726570 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr6.4:54724951-54724970 | MS.gene81882:CDS | 30.0% | |
| TCAAAATAGTATGGAAGGAA+AGG | + | chr6.4:54726740-54726759 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr6.4:54725423-54725442 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr6.4:54726685-54726704 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr6.4:54725309-54725328 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr6.4:54725948-54725967 | MS.gene81882:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr6.4:54725153-54725172 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr6.4:54725074-54725093 | MS.gene81882:CDS | 30.0% |
| ! | CATCATAAGAGTGTGTTATT+TGG | - | chr6.4:54726051-54726070 | MS.gene81882:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr6.4:54725299-54725318 | MS.gene81882:intron | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr6.4:54726862-54726881 | MS.gene81882:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr6.4:54726148-54726167 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr6.4:54726198-54726217 | MS.gene81882:intron | 30.0% |
| ! | TTTCCTTCCATACTATTTTG+AGG | - | chr6.4:54726739-54726758 | MS.gene81882:CDS | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr6.4:54726924-54726943 | MS.gene81882:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr6.4:54726925-54726944 | MS.gene81882:CDS | 30.0% |
| !!! | AAGATTTTAGAGTTCTTAGG+TGG | - | chr6.4:54727034-54727053 | MS.gene81882:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr6.4:54727089-54727108 | MS.gene81882:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr6.4:54726210-54726229 | MS.gene81882:intron | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr6.4:54726580-54726599 | MS.gene81882:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr6.4:54726581-54726600 | MS.gene81882:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr6.4:54725192-54725211 | MS.gene81882:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr6.4:54726914-54726933 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr6.4:54724940-54724959 | MS.gene81882:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr6.4:54725040-54725059 | MS.gene81882:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr6.4:54726427-54726446 | MS.gene81882:intron | 35.0% | |
| CTGAAATCTACCATGAATGT+TGG | - | chr6.4:54727145-54727164 | MS.gene81882:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr6.4:54725035-54725054 | MS.gene81882:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr6.4:54725254-54725273 | MS.gene81882:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr6.4:54724977-54724996 | MS.gene81882:CDS | 35.0% | |
| TCTAATTACGACTCGTCAAA+AGG | - | chr6.4:54725335-54725354 | MS.gene81882:intron | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr6.4:54725018-54725037 | None:intergenic | 35.0% | |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr6.4:54726510-54726529 | MS.gene81882:intron | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr6.4:54726223-54726242 | MS.gene81882:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr6.4:54727091-54727110 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr6.4:54726440-54726459 | MS.gene81882:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr6.4:54726094-54726113 | MS.gene81882:intron | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr6.4:54727092-54727111 | MS.gene81882:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr6.4:54726546-54726565 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr6.4:54725888-54725907 | None:intergenic | 40.0% | |
| ATCCCAATAGTCAGCTTATG+CGG | - | chr6.4:54726658-54726677 | MS.gene81882:CDS | 40.0% | |
| CCTCCTCAAAATAGTATGGA+AGG | + | chr6.4:54726745-54726764 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr6.4:54727133-54727152 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr6.4:54727158-54727177 | None:intergenic | 40.0% | |
| GTGTCCTCCTCAAAATAGTA+TGG | + | chr6.4:54726749-54726768 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr6.4:54726018-54726037 | MS.gene81882:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr6.4:54726158-54726177 | MS.gene81882:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr6.4:54725884-54725903 | MS.gene81882:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr6.4:54726159-54726178 | None:intergenic | 40.0% | |
| TGTCTTCTGCAACATCAACT+TGG | + | chr6.4:54725443-54725462 | None:intergenic | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | - | chr6.4:54726756-54726775 | MS.gene81882:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr6.4:54727182-54727201 | None:intergenic | 40.0% | |
| TTTGAGGAGGACACAACAAA+AGG | - | chr6.4:54726755-54726774 | MS.gene81882:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr6.4:54726399-54726418 | None:intergenic | 40.0% |
| ! | ATGTCGTATCTTTGAGAACC+GGG | - | chr6.4:54726988-54727007 | MS.gene81882:CDS | 40.0% |
| ! | CATGTCGTATCTTTGAGAAC+CGG | - | chr6.4:54726987-54727006 | MS.gene81882:CDS | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr6.4:54726599-54726618 | MS.gene81882:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr6.4:54725637-54725656 | MS.gene81882:CDS | 40.0% |
| !! | CCTTCCATACTATTTTGAGG+AGG | - | chr6.4:54726742-54726761 | MS.gene81882:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr6.4:54726439-54726458 | MS.gene81882:intron | 40.0% |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr6.4:54726878-54726897 | MS.gene81882:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr6.4:54724991-54725010 | None:intergenic | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr6.4:54726608-54726627 | MS.gene81882:CDS | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr6.4:54725261-54725280 | MS.gene81882:intron | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr6.4:54725465-54725484 | MS.gene81882:CDS | 40.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr6.4:54725402-54725421 | MS.gene81882:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr6.4:54725003-54725022 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr6.4:54725770-54725789 | MS.gene81882:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr6.4:54727009-54727028 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr6.4:54725045-54725064 | MS.gene81882:CDS | 45.0% | |
| GACCGCATAAGCTGACTATT+GGG | + | chr6.4:54726663-54726682 | None:intergenic | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr6.4:54726907-54726926 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr6.4:54726394-54726413 | MS.gene81882:intron | 45.0% | |
| GGGTTGTCATAGTCGACATT+AGG | - | chr6.4:54726945-54726964 | MS.gene81882:CDS | 45.0% | |
| TACGACTCGTCAAAAGGAGA+TGG | - | chr6.4:54725341-54725360 | MS.gene81882:intron | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr6.4:54725054-54725073 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr6.4:54726894-54726913 | MS.gene81882:CDS | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr6.4:54726462-54726481 | MS.gene81882:intron | 45.0% |
| ! | TGTCGTATCTTTGAGAACCG+GGG | - | chr6.4:54726989-54727008 | MS.gene81882:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr6.4:54726445-54726464 | MS.gene81882:intron | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr6.4:54725057-54725076 | MS.gene81882:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr6.4:54726166-54726185 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr6.4:54726162-54726181 | MS.gene81882:intron | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr6.4:54725165-54725184 | None:intergenic | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr6.4:54725344-54725363 | MS.gene81882:intron | 50.0% | |
| GGACCGCATAAGCTGACTAT+TGG | + | chr6.4:54726664-54726683 | None:intergenic | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr6.4:54726231-54726250 | MS.gene81882:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr6.4:54726230-54726249 | MS.gene81882:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr6.4:54725267-54725286 | MS.gene81882:intron | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr6.4:54726179-54726198 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr6.4:54725348-54725367 | MS.gene81882:intron | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr6.4:54725270-54725289 | MS.gene81882:intron | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr6.4:54725275-54725294 | MS.gene81882:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 54724883 | 54727225 | 54724883 | ID=MS.gene81882 |
| chr6.4 | mRNA | 54724883 | 54727225 | 54724883 | ID=MS.gene81882.t1;Parent=MS.gene81882 |
| chr6.4 | exon | 54726535 | 54727225 | 54726535 | ID=MS.gene81882.t1.exon1;Parent=MS.gene81882.t1 |
| chr6.4 | CDS | 54726535 | 54727225 | 54726535 | ID=cds.MS.gene81882.t1;Parent=MS.gene81882.t1 |
| chr6.4 | exon | 54725382 | 54726080 | 54725382 | ID=MS.gene81882.t1.exon2;Parent=MS.gene81882.t1 |
| chr6.4 | CDS | 54725382 | 54726080 | 54725382 | ID=cds.MS.gene81882.t1;Parent=MS.gene81882.t1 |
| chr6.4 | exon | 54724883 | 54725217 | 54724883 | ID=MS.gene81882.t1.exon3;Parent=MS.gene81882.t1 |
| chr6.4 | CDS | 54724883 | 54725217 | 54724883 | ID=cds.MS.gene81882.t1;Parent=MS.gene81882.t1 |
| Gene Sequence |
| Protein sequence |
