AlfalfaGEDB | MS.gene81987

M. sativa cultivar XinJiangDaYe / MS.gene81987

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81987.t1	XP_003602195.1	96.2	342	11	1	1	342	1	340	5.30E-183	650.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81987.t1	Q8H0Y8	35.4	353	164	12	3	338	7	312	1.4e-35	151.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81987.t1	B3U399	96.2	342	11	1	1	342	1	340	3.8e-183	650.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene81987.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81987.t1	MTR_3g090860	96.491	342	10	1	1	342	1	340	0.0	682
MS.gene81987.t1	MTR_8g099350	36.220	381	167	17	7	342	12	361	1.17e-52	177
MS.gene81987.t1	MTR_7g117200	34.551	356	173	12	7	342	12	327	7.89e-50	169
MS.gene81987.t1	MTR_8g027860	45.500	200	81	6	7	193	12	196	5.67e-45	157
MS.gene81987.t1	MTR_7g073430	33.333	204	102	4	2	197	9	186	5.82e-26	105
MS.gene81987.t1	MTR_7g073380	32.487	197	97	5	7	194	15	184	5.95e-25	102
MS.gene81987.t1	MTR_5g067680	62.500	64	24	0	129	192	198	261	2.24e-23	99.8
MS.gene81987.t1	MTR_8g005750	33.503	197	102	6	8	204	6	173	2.79e-22	95.1
MS.gene81987.t1	MTR_0002s1250	29.000	200	116	4	1	198	1	176	2.60e-20	89.4
MS.gene81987.t1	MTR_3g093830	31.532	222	112	9	13	223	23	215	6.38e-20	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81987.t1	AT4G23810	35.424	271	137	8	3	250	10	265	1.88e-46	160
MS.gene81987.t1	AT4G11070	34.844	353	166	11	3	338	7	312	2.26e-46	160
MS.gene81987.t1	AT5G24110	39.910	223	102	6	5	225	14	206	2.06e-42	149
MS.gene81987.t1	AT4G11070	32.258	341	159	8	3	338	7	280	4.01e-40	142
MS.gene81987.t1	AT2G46400	30.816	331	166	12	1	321	2	279	1.42e-30	118
MS.gene81987.t1	AT2G40750	32.227	211	110	7	5	193	13	212	3.59e-25	104
MS.gene81987.t1	AT3G56400	33.333	186	107	3	7	192	11	179	4.56e-24	100
MS.gene81987.t1	AT2G40740	59.677	62	25	0	131	192	171	232	4.75e-22	94.7
MS.gene81987.t1	AT2G40740	59.677	62	25	0	131	192	180	241	6.12e-22	94.7
MS.gene81987.t1	AT5G01900	28.708	209	124	5	5	213	6	189	2.47e-17	80.9

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Find 76 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACCAACTGCTTCTA+TGG	0.316690	3.2:-76699026	MS.gene81987:CDS
AAACATATTCGAGTTGAACC+AGG	0.613692	3.2:-76699687	MS.gene81987:CDS
AAGGTGGCGAATCTGATATT+CGG	0.465518	3.2:+76700079	None:intergenic
AATCTCACGTGTTTCATTAG+AGG	0.318717	3.2:+76700224	None:intergenic
AATTATATACCTTGGATGCA+CGG	0.579367	3.2:+76699593	None:intergenic
AATTATATCCACATTTGAAA+AGG	0.478087	3.2:-76700190	MS.gene81987:CDS
ACAATTGCTTCCAATGTGGT+TGG	0.610236	3.2:-76699385	MS.gene81987:CDS
ACCTTGGATGCACGGCTCCA+AGG	0.515275	3.2:+76699601	None:intergenic
ACTTATTCCTGAATTTGCAG+GGG	0.668793	3.2:+76699126	None:intergenic
AGATAAGCTACTACAAGGAT+TGG	0.478321	3.2:-76700289	MS.gene81987:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATATACCTTGGATGCA+CGG	+	chr3.2:76699677-76699696	None:intergenic	30.0%
ATAATCTCACTTGCCATATT+TGG	+	chr3.2:76700200-76700219	None:intergenic	30.0%
CAAATTTACATACCTCTTTC+TGG	+	chr3.2:76699274-76699293	None:intergenic	30.0%
CCGTAAAAGACATGTTAATA+TGG	-	chr3.2:76699116-76699135	MS.gene81987:CDS	30.0%
TAATCTCACTTGCCATATTT+GGG	+	chr3.2:76700199-76700218	None:intergenic	30.0%
TTCAAAAGTTGTTCATTTGG+TGG	+	chr3.2:76699993-76700012	None:intergenic	30.0%
AAGAGAAAAATCGTGAGTTG+TGG	+	chr3.2:76700313-76700332	None:intergenic	35.0%
AATCTCACGTGTTTCATTAG+AGG	+	chr3.2:76699046-76699065	None:intergenic	35.0%
ACTTATTCCTGAATTTGCAG+GGG	+	chr3.2:76700144-76700163	None:intergenic	35.0%
AGATAAGCTACTACAAGGAT+TGG	-	chr3.2:76698978-76698997	MS.gene81987:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	76698955	76700334	76698955	ID=MS.gene81987
chr3.2	mRNA	76698955	76700334	76698955	ID=MS.gene81987.t1;Parent=MS.gene81987
chr3.2	exon	76700009	76700334	76700009	ID=MS.gene81987.t1.exon1;Parent=MS.gene81987.t1
chr3.2	CDS	76700009	76700334	76700009	ID=cds.MS.gene81987.t1;Parent=MS.gene81987.t1
chr3.2	exon	76699603	76699734	76699603	ID=MS.gene81987.t1.exon2;Parent=MS.gene81987.t1
chr3.2	CDS	76699603	76699734	76699603	ID=cds.MS.gene81987.t1;Parent=MS.gene81987.t1
chr3.2	exon	76698955	76699525	76698955	ID=MS.gene81987.t1.exon3;Parent=MS.gene81987.t1
chr3.2	CDS	76698955	76699525	76698955	ID=cds.MS.gene81987.t1;Parent=MS.gene81987.t1

Gene Sequence

>MS.gene81987

ATGGGAGATTCAAAGAACTTAATAGATAAGCTACTACAAGGATTGGAGTTGGCAAGACAGCTTCAAATCTATCTCAACGTGTCATCTTCCTCTAATGAAACACGTGAGATTTTGATCCAGAAAATTATATCCACATTTGAAAAGGCACTTGAAATGGTTAACCGTAAAAGACATGTTAATATGGGTGAATCTTCACACCAACAATACCCTTCAGCCTCAGGAACACTTGCCATCCGAATATCAGATTCGCCACCTTTGAGCTGTAGTCCGCGAAGTGAAGACTCCGACAGAGATTTTAACCGTGATCACAATGCTTCCAGAAAGAGGTATGTAAATTTGTTAACTACTCTACTATTAATTAGACACATTAGATTGTCGAGAAAACTCTCGTTAGGCATTATCAAGTTTTTTTTTTAATACCGTAGGGTGCGCATAGATAATATGGCGAGTGATCTGAATGGGAGAAGTGTAGCTCTTTATAAACTTTTTTTATACGACCCGGGTTATTCTTAATAATACAAAAGTTGCTTGATTTGCTTCTCTATATGTATTGTACTAAACATGTGACCTTACCCTAGTTTTTATATTTATTTATTTTAGGAACACTCTAGCAATTAGATGGACAAAACATATTCGAGTTGAACCAGGAATGGCAGTGGAAGGTCCTCTTGATGATGGGTATAGTTGGAGAAAATATGGTCAGAAAGACATCCTTGGAGCCGTGCATCCAAGGTATATAATTTCTCAATTTAATGTTATATATCTATTGATATAGTATTGTTATATTAATTTTGTGTGTGTGTATGCAGAGGCTATTACAGATGCAGTCATAGAAACGTTCTAGGATGTTTAGCAACAAAGCAAGTACAAAGATCTGATGAAGACCCAACTATCTTTGAAATCACATACCGAGGAAACCACACATGCACAATTGCTTCCAATGTGGTTGGCCTTGGTCCAACATTAACTAATCCATTTCAAACCCAAGAAACAAATATTGTTAACACAAACCCTCAAAGCCTTGATCAACAAAAACCACCAAATGAACAACTTTTGAACAACCTACGAACAGGTCTAAGAGTTCAAACTGAGAACCTAGATTTCCTAAACCAATCATTTGTTCCATTTGAAAACCATGTACTTGAAAGTAGCTTTGCTGAAAATTTCAATTCTCCTTCATATGTTTCCCCTGCAAATTCAGGAATAAGTCACTTCTCAATGTCTCCAACTCCAAGTGTTTTCCCAAATATGGCAAGTGAGATTATTCCACCAGCTACTTCTGCTGCAAACACACCAACTGCTTCTATGGAGTTTCCATTTGATCAATTTGAATTTGATGGCCAAAACTTCACATTCCACAACTCACGATTTTTCTCTTAA

Protein sequence

>MS.gene81987.t1

MGDSKNLIDKLLQGLELARQLQIYLNVSSSSNETREILIQKIISTFEKALEMVNRKRHVNMGESSHQQYPSASGTLAIRISDSPPLSCSPRSEDSDRDFNRDHNASRKRNTLAIRWTKHIRVEPGMAVEGPLDDGYSWRKYGQKDILGAVHPRGYYRCSHRNVLGCLATKQVQRSDEDPTIFEITYRGNHTCTIASNVVGLGPTLTNPFQTQETNIVNTNPQSLDQQKPPNEQLLNNLRTGLRVQTENLDFLNQSFVPFENHVLESSFAENFNSPSYVSPANSGISHFSMSPTPSVFPNMASEIIPPATSAANTPTASMEFPFDQFEFDGQNFTFHNSRFFS