Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82026.t1 | XP_013444572.1 | 88.8 | 250 | 23 | 3 | 1 | 247 | 1 | 248 | 3.30E-110 | 407.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82026.t1 | A0A072TMF0 | 88.8 | 250 | 23 | 3 | 1 | 247 | 1 | 248 | 2.4e-110 | 407.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82026.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82026.t1 | MTR_8g024690 | 93.600 | 250 | 11 | 3 | 1 | 247 | 1 | 248 | 1.24e-168 | 465 |
| MS.gene82026.t1 | MTR_8g024690 | 93.600 | 250 | 11 | 3 | 1 | 247 | 1 | 248 | 2.69e-167 | 466 |
| MS.gene82026.t1 | MTR_3g100180 | 73.387 | 248 | 61 | 4 | 1 | 247 | 1 | 244 | 4.55e-119 | 355 |
| MS.gene82026.t1 | MTR_3g100180 | 73.387 | 248 | 61 | 4 | 1 | 247 | 1 | 244 | 9.76e-118 | 358 |
| MS.gene82026.t1 | MTR_2g066850 | 39.583 | 144 | 73 | 8 | 86 | 223 | 153 | 288 | 9.59e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82026.t1 | AT1G09710 | 45.714 | 245 | 121 | 6 | 4 | 247 | 9 | 242 | 8.35e-60 | 199 |
| MS.gene82026.t1 | AT1G09710 | 45.714 | 245 | 121 | 6 | 4 | 247 | 9 | 242 | 8.35e-60 | 199 |
| MS.gene82026.t1 | AT1G09710 | 45.714 | 245 | 121 | 6 | 4 | 247 | 9 | 242 | 1.83e-59 | 199 |
| MS.gene82026.t1 | AT1G58220 | 45.200 | 250 | 113 | 9 | 4 | 247 | 6 | 237 | 2.25e-54 | 186 |
| MS.gene82026.t1 | AT1G58220 | 45.200 | 250 | 113 | 9 | 4 | 247 | 6 | 237 | 3.44e-54 | 187 |
| MS.gene82026.t1 | AT1G09710 | 46.637 | 223 | 107 | 6 | 26 | 247 | 2 | 213 | 6.64e-54 | 182 |
| MS.gene82026.t1 | AT1G09710 | 46.637 | 223 | 107 | 6 | 26 | 247 | 2 | 213 | 6.64e-54 | 182 |
Find 63 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAATCAAATTTGGTATC+AGG | 0.181230 | 8.3:+67733095 | None:intergenic |
| CAATTCATTCCAATCAAATT+TGG | 0.191519 | 8.3:+67733088 | None:intergenic |
| GACCTTATTGACGTTGTTTC+AGG | 0.199531 | 8.3:-67733132 | MS.gene82026:CDS |
| CCTCAATTGTTGAGCTATTA+GGG | 0.224586 | 8.3:+67730245 | None:intergenic |
| GCCTCAATTGTTGAGCTATT+AGG | 0.234237 | 8.3:+67730244 | None:intergenic |
| TCTGTTGCACTTCTCTTAAT+AGG | 0.263867 | 8.3:+67729920 | None:intergenic |
| ACTGGAAAATTTACAGTCAT+TGG | 0.296643 | 8.3:+67730220 | None:intergenic |
| TTCTGTCTCTGAACAGTAAC+TGG | 0.300327 | 8.3:+67730124 | None:intergenic |
| TTCGGAGAAGGTAACCTTCT+TGG | 0.304445 | 8.3:+67733283 | None:intergenic |
| AGAGATGCGGTGAAGGGAAT+TGG | 0.330563 | 8.3:-67729970 | MS.gene82026:CDS |
| CAAATTTGATTGGAATGAAT+TGG | 0.371586 | 8.3:-67733087 | MS.gene82026:CDS |
| GTTCTCGATGAACGGTAAAC+TGG | 0.372611 | 8.3:+67730202 | None:intergenic |
| TCGGAGAAGGTAACCTTCTT+GGG | 0.378162 | 8.3:+67733284 | None:intergenic |
| ATGATTCCAGCTCGCAATCT+AGG | 0.387454 | 8.3:+67730840 | None:intergenic |
| TTCACAGCCCTCTGATTTGA+CGG | 0.395277 | 8.3:-67730167 | MS.gene82026:CDS |
| TTCCTGAAACAACGTCAATA+AGG | 0.413081 | 8.3:+67733130 | None:intergenic |
| ACCCTGATACCAAATTTGAT+TGG | 0.413869 | 8.3:-67733097 | MS.gene82026:CDS |
| AAAAGAATGGTCAGAGGAAG+AGG | 0.418034 | 8.3:-67730017 | MS.gene82026:CDS |
| TTAGAAACCAAGAGAATAGT+TGG | 0.438935 | 8.3:-67730073 | MS.gene82026:CDS |
| GGTACCACCAACTATTCTCT+TGG | 0.446261 | 8.3:+67730066 | None:intergenic |
| CTATGGCGCCGCTTGGCGTA+TGG | 0.469893 | 8.3:-67733017 | MS.gene82026:CDS |
| GAGATGCGGTGAAGGGAATT+GGG | 0.473351 | 8.3:-67729969 | MS.gene82026:CDS |
| TCCAATCAAATTTGGTATCA+GGG | 0.474839 | 8.3:+67733096 | None:intergenic |
| TCCCCTTGTTTGAAATCTTG+CGG | 0.501955 | 8.3:+67732984 | None:intergenic |
| CCATAGCATCTGATACTCTC+TGG | 0.501959 | 8.3:+67733034 | None:intergenic |
| TCAGATGCTATGGCGCCGCT+TGG | 0.503407 | 8.3:-67733024 | MS.gene82026:CDS |
| CCCTAATAGCTCAACAATTG+AGG | 0.514916 | 8.3:-67730245 | MS.gene82026:CDS |
| CCAGTACCACAGCTTCCAAA+AGG | 0.521688 | 8.3:-67730045 | MS.gene82026:CDS |
| CCGTTCATCGAGAACTTCAA+AGG | 0.526541 | 8.3:-67730194 | MS.gene82026:CDS |
| GCTGTTCAGAGATGCGGTGA+AGG | 0.527721 | 8.3:-67729977 | MS.gene82026:CDS |
| CCAGAGAGTATCAGATGCTA+TGG | 0.533322 | 8.3:-67733034 | MS.gene82026:CDS |
| AATTGGGTAGCCATGGCAAA+AGG | 0.538707 | 8.3:-67729953 | MS.gene82026:CDS |
| CCTTTGAAGTTCTCGATGAA+CGG | 0.541805 | 8.3:+67730194 | None:intergenic |
| AAGTGCAACAGAATTGTCTC+AGG | 0.543345 | 8.3:-67729909 | None:intergenic |
| TTGGTGAACAAAACTTCCAC+TGG | 0.548762 | 8.3:-67733068 | MS.gene82026:CDS |
| CCAAAAGGAAAAGAAAAGAA+TGG | 0.553085 | 8.3:-67730030 | MS.gene82026:CDS |
| ACAAGGGGACGATGAACCTA+TGG | 0.553695 | 8.3:-67732970 | MS.gene82026:intron |
| TCGCCGCAAGATTTCAAACA+AGG | 0.557645 | 8.3:-67732987 | MS.gene82026:CDS |
| GTCTGTTCCGTCAAATCAGA+GGG | 0.558000 | 8.3:+67730160 | None:intergenic |
| GAAAAGAAAAGAATGGTCAG+AGG | 0.561735 | 8.3:-67730023 | MS.gene82026:CDS |
| TGATGTAGCTTCAACATGTA+CGG | 0.566855 | 8.3:+67730811 | None:intergenic |
| TGTCTGTTCCGTCAAATCAG+AGG | 0.568559 | 8.3:+67730159 | None:intergenic |
| GGAAGAGGACAATCAGCTAC+GGG | 0.574165 | 8.3:-67730002 | MS.gene82026:CDS |
| GGTAGATTCACTTAGCGTGC+GGG | 0.580813 | 8.3:+67730267 | None:intergenic |
| CTGTTCAGAGATGCGGTGAA+GGG | 0.582365 | 8.3:-67729976 | MS.gene82026:CDS |
| GCCAGAAAATAATCCCAAGA+AGG | 0.583604 | 8.3:-67733297 | MS.gene82026:CDS |
| CGGGCTGCTGTTCAGAGATG+CGG | 0.586482 | 8.3:-67729983 | MS.gene82026:CDS |
| AGGAAGAGGACAATCAGCTA+CGG | 0.586801 | 8.3:-67730003 | MS.gene82026:CDS |
| TGAAGGGAATTGGGTAGCCA+TGG | 0.588079 | 8.3:-67729960 | MS.gene82026:CDS |
| CGCCGCAAGATTTCAAACAA+GGG | 0.604213 | 8.3:-67732986 | MS.gene82026:CDS |
| GGGTAGATTCACTTAGCGTG+CGG | 0.613224 | 8.3:+67730266 | None:intergenic |
| GTAGCTTCAACATGTACGGA+AGG | 0.615313 | 8.3:+67730815 | None:intergenic |
| AGGAACAACCATACGCCAAG+CGG | 0.617202 | 8.3:+67733009 | None:intergenic |
| ATTCACCTTCGCACATGCTG+AGG | 0.618037 | 8.3:+67730784 | None:intergenic |
| CTCAATTGTTGAGCTATTAG+GGG | 0.619081 | 8.3:+67730246 | None:intergenic |
| GCCGCAAGATTTCAAACAAG+GGG | 0.627051 | 8.3:-67732985 | MS.gene82026:CDS |
| TAGTGACCTAGATTGCGAGC+TGG | 0.630707 | 8.3:-67730846 | MS.gene82026:CDS |
| AGAGTCCTCAGCATGTGCGA+AGG | 0.635460 | 8.3:-67730789 | MS.gene82026:intron |
| ATACCGTTGTGTGATTGAAG+CGG | 0.642344 | 8.3:+67733253 | None:intergenic |
| GAAACCAAGAGAATAGTTGG+TGG | 0.642501 | 8.3:-67730070 | MS.gene82026:CDS |
| TTGTTTGAAATCTTGCGGCG+AGG | 0.668744 | 8.3:+67732989 | None:intergenic |
| TCTGGCATTAGAAATACCAG+TGG | 0.709866 | 8.3:+67733052 | None:intergenic |
| ACGCCGCTTCAATCACACAA+CGG | 0.764373 | 8.3:-67733256 | MS.gene82026:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | chr8.3:67730862-67730881 | MS.gene82026:intron | 0.0% |
| !! | ATAAATATAGATAACAAAAT+AGG | + | chr8.3:67730628-67730647 | None:intergenic | 10.0% |
| !! | TAAATATAGATAACAAAATA+GGG | + | chr8.3:67730627-67730646 | None:intergenic | 10.0% |
| !! | AAAGATAAAATAACGTTAAA+TGG | - | chr8.3:67731467-67731486 | MS.gene82026:intron | 15.0% |
| !! | AAATATAGATAACAAAATAG+GGG | + | chr8.3:67730626-67730645 | None:intergenic | 15.0% |
| !! | ATTTCTGATAATTGATTATT+TGG | - | chr8.3:67731347-67731366 | MS.gene82026:intron | 15.0% |
| !! | TTATTTATAAAGATCCTTAA+TGG | - | chr8.3:67732588-67732607 | MS.gene82026:intron | 15.0% |
| !! | TTTCTGATAATTGATTATTT+GGG | - | chr8.3:67731348-67731367 | MS.gene82026:intron | 15.0% |
| !!! | AATGTTTTTACTGAAAAATA+TGG | - | chr8.3:67732750-67732769 | MS.gene82026:intron | 15.0% |
| !!! | TGCAAATAAATAAACTTTTA+TGG | - | chr8.3:67730451-67730470 | MS.gene82026:intron | 15.0% |
| !!! | TTTTTTGTTTTCATATTTTC+AGG | - | chr8.3:67732333-67732352 | MS.gene82026:intron | 15.0% |
| !! | AAAAAATAAGTCAACTCAAA+TGG | + | chr8.3:67730424-67730443 | None:intergenic | 20.0% |
| !! | AATACTGTTTCATTTAATAG+AGG | + | chr8.3:67732543-67732562 | None:intergenic | 20.0% |
| !! | ATCTATCAAACAACAAAAAT+AGG | + | chr8.3:67732788-67732807 | None:intergenic | 20.0% |
| !! | TATCACAATACATTAATTCA+AGG | - | chr8.3:67732011-67732030 | MS.gene82026:intron | 20.0% |
| !! | TTCTGATAATTGATTATTTG+GGG | - | chr8.3:67731349-67731368 | MS.gene82026:intron | 20.0% |
| !! | TTGTAATTCTAGTAAAAATG+CGG | - | chr8.3:67732664-67732683 | MS.gene82026:intron | 20.0% |
| !!! | AGTTTTTATTAGCAACATAA+AGG | - | chr8.3:67732095-67732114 | MS.gene82026:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | - | chr8.3:67731070-67731089 | MS.gene82026:intron | 20.0% |
| ! | AAAAAACAAGTCAATCCAAA+CGG | - | chr8.3:67730598-67730617 | MS.gene82026:intron | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | + | chr8.3:67731375-67731394 | None:intergenic | 25.0% |
| ! | AATAATCATAGTTGTCAAAG+CGG | - | chr8.3:67730765-67730784 | MS.gene82026:intron | 25.0% |
| ! | ATTAAATGAAACAGTATTCG+TGG | - | chr8.3:67732545-67732564 | MS.gene82026:intron | 25.0% |
| ! | CAAATTTGATTGGAATGAAT+TGG | - | chr8.3:67730122-67730141 | MS.gene82026:CDS | 25.0% |
| ! | CAATTCATTCCAATCAAATT+TGG | + | chr8.3:67730124-67730143 | None:intergenic | 25.0% |
| ! | TTAAATGTGTGATTCCATTA+AGG | + | chr8.3:67732605-67732624 | None:intergenic | 25.0% |
| ! | TTTGAATTACTGCAATGTAT+TGG | - | chr8.3:67731755-67731774 | MS.gene82026:intron | 25.0% |
| !! | AACTGATTAGTCATAGAATA+TGG | + | chr8.3:67731983-67732002 | None:intergenic | 25.0% |
| !! | AAGATACAATTTTCGTTAGT+GGG | - | chr8.3:67730520-67730539 | MS.gene82026:intron | 25.0% |
| !! | ATACTGGCACAATTTAATTT+CGG | - | chr8.3:67732038-67732057 | MS.gene82026:intron | 25.0% |
| !!! | ATTTTTGTTTCGTAGATTCT+TGG | - | chr8.3:67732278-67732297 | MS.gene82026:intron | 25.0% |
| !!! | TAAGTTTTCTGAGACTATTT+TGG | + | chr8.3:67731586-67731605 | None:intergenic | 25.0% |
| AAAAAATACTATGAGACCGA+AGG | + | chr8.3:67730279-67730298 | None:intergenic | 30.0% | |
| AAAAACAAGTCAATCCAAAC+GGG | - | chr8.3:67730599-67730618 | MS.gene82026:intron | 30.0% | |
| AAAAATACTATGAGACCGAA+GGG | + | chr8.3:67730278-67730297 | None:intergenic | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | + | chr8.3:67731063-67731082 | None:intergenic | 30.0% | |
| ACTGGAAAATTTACAGTCAT+TGG | + | chr8.3:67732992-67733011 | None:intergenic | 30.0% | |
| ATTAATATCTGACAGTGATG+CGG | - | chr8.3:67732697-67732716 | MS.gene82026:intron | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | + | chr8.3:67731062-67731081 | None:intergenic | 30.0% | |
| CATTGAAACCATAAAGAACT+TGG | + | chr8.3:67732833-67732852 | None:intergenic | 30.0% | |
| CCAAAAGGAAAAGAAAAGAA+TGG | - | chr8.3:67733179-67733198 | MS.gene82026:intron | 30.0% | |
| CCTTGAATAATTGATGTATC+CGG | - | chr8.3:67730321-67730340 | MS.gene82026:intron | 30.0% | |
| GCAAATTTCTTTCTGATTGT+GGG | - | chr8.3:67732630-67732649 | MS.gene82026:intron | 30.0% | |
| TATCTGCTTCATAAACAAAC+CGG | + | chr8.3:67730343-67730362 | None:intergenic | 30.0% | |
| TCCAATCAAATTTGGTATCA+GGG | + | chr8.3:67730116-67730135 | None:intergenic | 30.0% | |
| TGCAAATTTCTTTCTGATTG+TGG | - | chr8.3:67732629-67732648 | MS.gene82026:intron | 30.0% | |
| TGGAATAACCAAGTTCTTTA+TGG | - | chr8.3:67732822-67732841 | MS.gene82026:intron | 30.0% | |
| TGTAGTAAGTAGTTCATACA+AGG | - | chr8.3:67731900-67731919 | MS.gene82026:intron | 30.0% | |
| TTAGAAACCAAGAGAATAGT+TGG | - | chr8.3:67733136-67733155 | MS.gene82026:CDS | 30.0% | |
| TTCCAATCAAATTTGGTATC+AGG | + | chr8.3:67730117-67730136 | None:intergenic | 30.0% | |
| TTGGTTATTCCACACTAAAT+GGG | + | chr8.3:67732814-67732833 | None:intergenic | 30.0% | |
| ! | ATTAATTCAAGGCATCATAC+TGG | - | chr8.3:67732022-67732041 | MS.gene82026:intron | 30.0% |
| ! | CCATTCTTTTCTTTTCCTTT+TGG | + | chr8.3:67733182-67733201 | None:intergenic | 30.0% |
| ! | CTTCAGGTTAATTGAATAAC+CGG | + | chr8.3:67730368-67730387 | None:intergenic | 30.0% |
| ! | GAAGATACAATTTTCGTTAG+TGG | - | chr8.3:67730519-67730538 | MS.gene82026:intron | 30.0% |
| !! | ATTGGAAAGCACCTTAATTT+CGG | - | chr8.3:67731773-67731792 | MS.gene82026:intron | 30.0% |
| !!! | AATCGTTTTTTGTGTTTTGC+AGG | - | chr8.3:67730043-67730062 | MS.gene82026:CDS | 30.0% |
| !!! | ACGTTCTTATTTTCATCATG+AGG | + | chr8.3:67732125-67732144 | None:intergenic | 30.0% |
| AAAGCTATTCGAACAAAACG+AGG | + | chr8.3:67730699-67730718 | None:intergenic | 35.0% | |
| ACAAAGGCAGTACATGTAAA+AGG | + | chr8.3:67732184-67732203 | None:intergenic | 35.0% | |
| ACCCTGATACCAAATTTGAT+TGG | - | chr8.3:67730112-67730131 | MS.gene82026:CDS | 35.0% | |
| AGTCCTATAGCTGTATGATA+AGG | + | chr8.3:67732727-67732746 | None:intergenic | 35.0% | |
| ATAGATAGTCCCATTTAGTG+TGG | - | chr8.3:67732802-67732821 | MS.gene82026:intron | 35.0% | |
| ATGTTTGCGTCTGTTATTGT+TGG | - | chr8.3:67730721-67730740 | MS.gene82026:intron | 35.0% | |
| CAAAGGCAGTACATGTAAAA+GGG | + | chr8.3:67732183-67732202 | None:intergenic | 35.0% | |
| CCGGATACATCAATTATTCA+AGG | + | chr8.3:67730324-67730343 | None:intergenic | 35.0% | |
| CCTCAATTGTTGAGCTATTA+GGG | + | chr8.3:67732967-67732986 | None:intergenic | 35.0% | |
| CTAGGTCTCAAATATAAGCA+CGG | + | chr8.3:67730398-67730417 | None:intergenic | 35.0% | |
| CTCAATTGTTGAGCTATTAG+GGG | + | chr8.3:67732966-67732985 | None:intergenic | 35.0% | |
| CTTGGTTATTCCACACTAAA+TGG | + | chr8.3:67732815-67732834 | None:intergenic | 35.0% | |
| GAAAAGAAAAGAATGGTCAG+AGG | - | chr8.3:67733186-67733205 | MS.gene82026:intron | 35.0% | |
| GATTAGAGATCTAGAGATCT+AGG | + | chr8.3:67731024-67731043 | None:intergenic | 35.0% | |
| GCTAAAAGTTTCCAGAACTA+AGG | + | chr8.3:67731812-67731831 | None:intergenic | 35.0% | |
| GTAGATAAGCTAATCCAAAC+AGG | - | chr8.3:67731611-67731630 | MS.gene82026:intron | 35.0% | |
| TCTGTTGCACTTCTCTTAAT+AGG | + | chr8.3:67733292-67733311 | None:intergenic | 35.0% | |
| TGATGTAGCTTCAACATGTA+CGG | + | chr8.3:67732401-67732420 | None:intergenic | 35.0% | |
| TGTTTATGAAGCAGATACAC+CGG | - | chr8.3:67730346-67730365 | MS.gene82026:intron | 35.0% | |
| TGTTTCGTAGATTCTTGGAT+AGG | - | chr8.3:67732283-67732302 | MS.gene82026:intron | 35.0% | |
| TTCCTGAAACAACGTCAATA+AGG | + | chr8.3:67730082-67730101 | None:intergenic | 35.0% | |
| TTGCCTTATCATACAGCTAT+AGG | - | chr8.3:67732721-67732740 | MS.gene82026:intron | 35.0% | |
| TTTGCAGCTTATAACACAAG+TGG | - | chr8.3:67731393-67731412 | MS.gene82026:intron | 35.0% | |
| ! | ACCTTCTTGGGATTATTTTC+TGG | + | chr8.3:67729916-67729935 | None:intergenic | 35.0% |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | chr8.3:67731104-67731123 | MS.gene82026:intron | 35.0% |
| ! | GTGCTTATATTTGAGACCTA+GGG | - | chr8.3:67730397-67730416 | MS.gene82026:intron | 35.0% |
| !! | GTTTGGATTAGCTTATCTAC+TGG | + | chr8.3:67731611-67731630 | None:intergenic | 35.0% |
| AAAAGAATGGTCAGAGGAAG+AGG | - | chr8.3:67733192-67733211 | MS.gene82026:intron | 40.0% | |
| ACAAGTGACGGTACTTATGT+GGG | - | chr8.3:67731643-67731662 | MS.gene82026:intron | 40.0% | |
| ACCTAACAGGAAATGGCAAT+TGG | + | chr8.3:67732214-67732233 | None:intergenic | 40.0% | |
| ATACCAACAGTAGTTAGCTC+AGG | + | chr8.3:67731703-67731722 | None:intergenic | 40.0% | |
| ATACCGTTGTGTGATTGAAG+CGG | + | chr8.3:67729959-67729978 | None:intergenic | 40.0% | |
| ATACCTGAGCTAACTACTGT+TGG | - | chr8.3:67731697-67731716 | MS.gene82026:intron | 40.0% | |
| ATTGCCTCTGTTGTCAATAG+CGG | + | chr8.3:67731316-67731335 | None:intergenic | 40.0% | |
| CCCTAATAGCTCAACAATTG+AGG | - | chr8.3:67732964-67732983 | MS.gene82026:intron | 40.0% | |
| GAAACCAAGAGAATAGTTGG+TGG | - | chr8.3:67733139-67733158 | MS.gene82026:CDS | 40.0% | |
| GAAGCCGAATGCTCAAATAA+AGG | + | chr8.3:67731837-67731856 | None:intergenic | 40.0% | |
| GCCAGAAAATAATCCCAAGA+AGG | - | chr8.3:67729912-67729931 | MS.gene82026:CDS | 40.0% | |
| GCCTCAATTGTTGAGCTATT+AGG | + | chr8.3:67732968-67732987 | None:intergenic | 40.0% | |
| GGCAATTGGAAGAGTAACAA+AGG | + | chr8.3:67732200-67732219 | None:intergenic | 40.0% | |
| TAAGCACGGATTCTTTCTTC+AGG | + | chr8.3:67730384-67730403 | None:intergenic | 40.0% | |
| TACAAGTGACGGTACTTATG+TGG | - | chr8.3:67731642-67731661 | MS.gene82026:intron | 40.0% | |
| TAGTTGTCAAAGCGGAAATG+CGG | - | chr8.3:67730773-67730792 | MS.gene82026:intron | 40.0% | |
| TCTGGCATTAGAAATACCAG+TGG | + | chr8.3:67730160-67730179 | None:intergenic | 40.0% | |
| TGAAGACGATCTAGAGATCT+AGG | + | chr8.3:67730984-67731003 | None:intergenic | 40.0% | |
| TTCTGTCTCTGAACAGTAAC+TGG | + | chr8.3:67733088-67733107 | None:intergenic | 40.0% | |
| TTGGTGAACAAAACTTCCAC+TGG | - | chr8.3:67730141-67730160 | MS.gene82026:CDS | 40.0% | |
| ! | AAATCTGTCTCCTTTTGCCA+TGG | + | chr8.3:67733269-67733288 | None:intergenic | 40.0% |
| ! | ATTGCCATTTCCTGTTAGGT+TGG | - | chr8.3:67732214-67732233 | MS.gene82026:intron | 40.0% |
| ! | CGTGCTTATATTTGAGACCT+AGG | - | chr8.3:67730396-67730415 | MS.gene82026:intron | 40.0% |
| ! | GACCTTATTGACGTTGTTTC+AGG | - | chr8.3:67730077-67730096 | MS.gene82026:CDS | 40.0% |
| ! | GCTGCCTTTATTTGAGCATT+CGG | - | chr8.3:67731830-67731849 | MS.gene82026:intron | 40.0% |
| ! | TCCAATTGCCATTTCCTGTT+AGG | - | chr8.3:67732210-67732229 | MS.gene82026:intron | 40.0% |
| ! | TCCCCTTGTTTGAAATCTTG+CGG | + | chr8.3:67730228-67730247 | None:intergenic | 40.0% |
| ! | TTGATTATTTGGGGCCTGTT+TGG | - | chr8.3:67731358-67731377 | MS.gene82026:intron | 40.0% |
| ! | TTTCCAGAACTAAGGCACTA+GGG | + | chr8.3:67731804-67731823 | None:intergenic | 40.0% |
| !! | CCTTTGAAGTTCTCGATGAA+CGG | + | chr8.3:67733018-67733037 | None:intergenic | 40.0% |
| !! | TCTTTTCCTTTTGGAAGCTG+TGG | + | chr8.3:67733173-67733192 | None:intergenic | 40.0% |
| !! | TTCTTCAATTTTGACCAGCC+TGG | - | chr8.3:67732882-67732901 | MS.gene82026:intron | 40.0% |
| AACAAAATAGGGGACCCGTT+TGG | + | chr8.3:67730616-67730635 | None:intergenic | 45.0% | |
| AATTGGGTAGCCATGGCAAA+AGG | - | chr8.3:67733256-67733275 | MS.gene82026:intron | 45.0% | |
| AGGAAGAGGACAATCAGCTA+CGG | - | chr8.3:67733206-67733225 | MS.gene82026:intron | 45.0% | |
| AGGCAGTACATGTAAAAGGG+TGG | + | chr8.3:67732180-67732199 | None:intergenic | 45.0% | |
| AGGCCTCTTGTTACAAGTGA+CGG | - | chr8.3:67731631-67731650 | MS.gene82026:intron | 45.0% | |
| AGTCAACTCAAATGGACCCT+AGG | + | chr8.3:67730416-67730435 | None:intergenic | 45.0% | |
| ATGATTCCAGCTCGCAATCT+AGG | + | chr8.3:67732372-67732391 | None:intergenic | 45.0% | |
| ATTAAACAACGCCGAGAACC+AGG | + | chr8.3:67732903-67732922 | None:intergenic | 45.0% | |
| CACCACATAACTGGTGCTTA+AGG | + | chr8.3:67731941-67731960 | None:intergenic | 45.0% | |
| CCATAGCATCTGATACTCTC+TGG | + | chr8.3:67730178-67730197 | None:intergenic | 45.0% | |
| CCGTTCATCGAGAACTTCAA+AGG | - | chr8.3:67733015-67733034 | MS.gene82026:CDS | 45.0% | |
| CGCCGCAAGATTTCAAACAA+GGG | - | chr8.3:67730223-67730242 | MS.gene82026:CDS | 45.0% | |
| CTAGGGGAAGACCGAAATTA+AGG | + | chr8.3:67731787-67731806 | None:intergenic | 45.0% | |
| CTAGTGCATCACCACATAAC+TGG | + | chr8.3:67731950-67731969 | None:intergenic | 45.0% | |
| CTCGGCGTTGTTTAATCATC+AGG | - | chr8.3:67732907-67732926 | MS.gene82026:intron | 45.0% | |
| CTTGTAACAAGAGGCCTGTT+TGG | + | chr8.3:67731628-67731647 | None:intergenic | 45.0% | |
| GATCAACGCGGGCAAAAAAT+GGG | + | chr8.3:67731154-67731173 | None:intergenic | 45.0% | |
| GCCGCAAGATTTCAAACAAG+GGG | - | chr8.3:67730224-67730243 | MS.gene82026:CDS | 45.0% | |
| GGTACCACCAACTATTCTCT+TGG | + | chr8.3:67733146-67733165 | None:intergenic | 45.0% | |
| GTACCGTCACTTGTAACAAG+AGG | + | chr8.3:67731637-67731656 | None:intergenic | 45.0% | |
| GTAGCTTCAACATGTACGGA+AGG | + | chr8.3:67732397-67732416 | None:intergenic | 45.0% | |
| GTCTGTTCCGTCAAATCAGA+GGG | + | chr8.3:67733052-67733071 | None:intergenic | 45.0% | |
| GTTCTCGATGAACGGTAAAC+TGG | + | chr8.3:67733010-67733029 | None:intergenic | 45.0% | |
| TAGACCGCTATTGACAACAG+AGG | - | chr8.3:67731309-67731328 | MS.gene82026:intron | 45.0% | |
| TCGCCGCAAGATTTCAAACA+AGG | - | chr8.3:67730222-67730241 | MS.gene82026:CDS | 45.0% | |
| TCGGAGAAGGTAACCTTCTT+GGG | + | chr8.3:67729928-67729947 | None:intergenic | 45.0% | |
| TGTCTGTTCCGTCAAATCAG+AGG | + | chr8.3:67733053-67733072 | None:intergenic | 45.0% | |
| TGTGCCAACCTAACAGGAAA+TGG | + | chr8.3:67732221-67732240 | None:intergenic | 45.0% | |
| TTCGGAGAAGGTAACCTTCT+TGG | + | chr8.3:67729929-67729948 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | + | chr8.3:67731306-67731325 | None:intergenic | 45.0% | |
| ! | GTTTCCAGAACTAAGGCACT+AGG | + | chr8.3:67731805-67731824 | None:intergenic | 45.0% |
| ! | TTCACAGCCCTCTGATTTGA+CGG | - | chr8.3:67733042-67733061 | MS.gene82026:CDS | 45.0% |
| ! | TTCCAGAACTAAGGCACTAG+GGG | + | chr8.3:67731803-67731822 | None:intergenic | 45.0% |
| ! | TTGTTTGAAATCTTGCGGCG+AGG | + | chr8.3:67730223-67730242 | None:intergenic | 45.0% |
| !! | ATTTTGACCAGCCTGGTTCT+CGG | - | chr8.3:67732889-67732908 | MS.gene82026:intron | 45.0% |
| !! | CCAGAGAGTATCAGATGCTA+TGG | - | chr8.3:67730175-67730194 | MS.gene82026:CDS | 45.0% |
| ACAAGGGGACGATGAACCTA+TGG | - | chr8.3:67730239-67730258 | MS.gene82026:CDS | 50.0% | |
| ACGCCGCTTCAATCACACAA+CGG | - | chr8.3:67729953-67729972 | MS.gene82026:CDS | 50.0% | |
| AGAGATGCGGTGAAGGGAAT+TGG | - | chr8.3:67733239-67733258 | MS.gene82026:intron | 50.0% | |
| AGGAACAACCATACGCCAAG+CGG | + | chr8.3:67730203-67730222 | None:intergenic | 50.0% | |
| AGGCCAATGCGGAACAATAG+CGG | + | chr8.3:67731218-67731237 | None:intergenic | 50.0% | |
| ATTCACCTTCGCACATGCTG+AGG | + | chr8.3:67732428-67732447 | None:intergenic | 50.0% | |
| CCAGTACCACAGCTTCCAAA+AGG | - | chr8.3:67733164-67733183 | MS.gene82026:intron | 50.0% | |
| CGCCTTAAGCACCAGTTATG+TGG | - | chr8.3:67731936-67731955 | MS.gene82026:intron | 50.0% | |
| CTGTTCAGAGATGCGGTGAA+GGG | - | chr8.3:67733233-67733252 | MS.gene82026:intron | 50.0% | |
| GAGATGCGGTGAAGGGAATT+GGG | - | chr8.3:67733240-67733259 | MS.gene82026:intron | 50.0% | |
| GCTGATTGTGCCAACCTAAC+AGG | + | chr8.3:67732227-67732246 | None:intergenic | 50.0% | |
| GGAAGAGGACAATCAGCTAC+GGG | - | chr8.3:67733207-67733226 | MS.gene82026:intron | 50.0% | |
| GGATCAACGCGGGCAAAAAA+TGG | + | chr8.3:67731155-67731174 | None:intergenic | 50.0% | |
| GGGTAGATTCACTTAGCGTG+CGG | + | chr8.3:67732946-67732965 | None:intergenic | 50.0% | |
| GGTAGATTCACTTAGCGTGC+GGG | + | chr8.3:67732945-67732964 | None:intergenic | 50.0% | |
| TAGTGACCTAGATTGCGAGC+TGG | - | chr8.3:67732363-67732382 | MS.gene82026:intron | 50.0% | |
| TGAAGGGAATTGGGTAGCCA+TGG | - | chr8.3:67733249-67733268 | MS.gene82026:intron | 50.0% | |
| TTCCCCTAGTGCCTTAGTTC+TGG | - | chr8.3:67731798-67731817 | MS.gene82026:intron | 50.0% | |
| ! | AGACCGAAGGGAGTATGAGA+CGG | + | chr8.3:67730266-67730285 | None:intergenic | 50.0% |
| !! | CCTTTTGGAAGCTGTGGTAC+TGG | + | chr8.3:67733167-67733186 | None:intergenic | 50.0% |
| !! | GATTGAAGCGGCGTCGTTTT+CGG | + | chr8.3:67729947-67729966 | None:intergenic | 50.0% |
| AGAGTCCTCAGCATGTGCGA+AGG | - | chr8.3:67732420-67732439 | MS.gene82026:intron | 55.0% | |
| AGTCGTGCGTTAGGCCAATG+CGG | + | chr8.3:67731229-67731248 | None:intergenic | 55.0% | |
| ATTCGGCTTCGTCACTGTGC+TGG | - | chr8.3:67731847-67731866 | MS.gene82026:intron | 55.0% | |
| CCCAAAAATTGACGCGACGC+GGG | - | chr8.3:67730810-67730829 | MS.gene82026:CDS | 55.0% | |
| CCCCAAAAATTGACGCGACG+CGG | - | chr8.3:67730809-67730828 | MS.gene82026:CDS | 55.0% | |
| GACCCGCTATTGTTCCGCAT+TGG | - | chr8.3:67731212-67731231 | MS.gene82026:intron | 55.0% | |
| GCGGGCGCTATTACATGAAG+CGG | - | chr8.3:67730828-67730847 | MS.gene82026:CDS | 55.0% | |
| GCTGTTCAGAGATGCGGTGA+AGG | - | chr8.3:67733232-67733251 | MS.gene82026:intron | 55.0% | |
| GGCAAAAAGCGGATCAACGC+GGG | + | chr8.3:67731165-67731184 | None:intergenic | 55.0% | |
| GGCCAATGCGGAACAATAGC+GGG | + | chr8.3:67731217-67731236 | None:intergenic | 55.0% | |
| GGGCAAAAAGCGGATCAACG+CGG | + | chr8.3:67731166-67731185 | None:intergenic | 55.0% | |
| GGTCCGTCTCATACTCCCTT+CGG | - | chr8.3:67730260-67730279 | MS.gene82026:CDS | 55.0% | |
| TTCGGCTTCGTCACTGTGCT+GGG | - | chr8.3:67731848-67731867 | MS.gene82026:intron | 55.0% | |
| ! | CATTGGCCTAACGCACGACT+CGG | - | chr8.3:67731229-67731248 | MS.gene82026:intron | 55.0% |
| ! | CCCGCGTCGCGTCAATTTTT+GGG | + | chr8.3:67730813-67730832 | None:intergenic | 55.0% |
| ! | CCGCGTCGCGTCAATTTTTG+GGG | + | chr8.3:67730812-67730831 | None:intergenic | 55.0% |
| ! | GGGAGTATGAGACGGACCAT+AGG | + | chr8.3:67730258-67730277 | None:intergenic | 55.0% |
| !! | CGTCGCGTCAATTTTTGGGG+TGG | + | chr8.3:67730809-67730828 | None:intergenic | 55.0% |
| !! | GAACAATAGCGGGTCAACGC+GGG | + | chr8.3:67731207-67731226 | None:intergenic | 55.0% |
| !! | GGAACAATAGCGGGTCAACG+CGG | + | chr8.3:67731208-67731227 | None:intergenic | 55.0% |
| AACAACGCCGAGAACCAGGC+TGG | + | chr8.3:67732899-67732918 | None:intergenic | 60.0% | |
| CGGGCTGCTGTTCAGAGATG+CGG | - | chr8.3:67733226-67733245 | MS.gene82026:intron | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | + | chr8.3:67731186-67731205 | None:intergenic | 60.0% | |
| GGGCAAAAAGCGGGTCAACG+CGG | + | chr8.3:67731187-67731206 | None:intergenic | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | chr8.3:67731176-67731195 | None:intergenic | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | chr8.3:67731175-67731194 | None:intergenic | 60.0% | |
| GTCAAAGCGGAAATGCGGCG+CGG | - | chr8.3:67730778-67730797 | MS.gene82026:intron | 60.0% | |
| TCAGATGCTATGGCGCCGCT+TGG | - | chr8.3:67730185-67730204 | MS.gene82026:CDS | 60.0% | |
| ! | GCCCGCGTCGCGTCAATTTT+TGG | + | chr8.3:67730814-67730833 | None:intergenic | 60.0% |
| !! | AGCGGCGTCGTTTTCGGAGA+AGG | + | chr8.3:67729941-67729960 | None:intergenic | 60.0% |
| ACGCGACCGAGTCGTGCGTT+AGG | + | chr8.3:67731238-67731257 | None:intergenic | 65.0% | |
| CTATGGCGCCGCTTGGCGTA+TGG | - | chr8.3:67730192-67730211 | MS.gene82026:CDS | 65.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | - | chr8.3:67731249-67731268 | MS.gene82026:intron | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | + | chr8.3:67731295-67731314 | None:intergenic | 70.0% | |
| AGCGGAAATGCGGCGCGGCG+CGG | - | chr8.3:67730783-67730802 | MS.gene82026:intron | 75.0% | |
| ! | AACGCGGCGCGATCGCGGCG+CGG | + | chr8.3:67731290-67731309 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | + | chr8.3:67731285-67731304 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 67729910 | 67733321 | 67729910 | ID=MS.gene82026 |
| chr8.3 | mRNA | 67729910 | 67733321 | 67729910 | ID=MS.gene82026.t1;Parent=MS.gene82026 |
| chr8.3 | exon | 67733257 | 67733321 | 67733257 | ID=MS.gene82026.t1.exon1;Parent=MS.gene82026.t1 |
| chr8.3 | CDS | 67733257 | 67733321 | 67733257 | ID=cds.MS.gene82026.t1;Parent=MS.gene82026.t1 |
| chr8.3 | exon | 67732971 | 67733166 | 67732971 | ID=MS.gene82026.t1.exon2;Parent=MS.gene82026.t1 |
| chr8.3 | CDS | 67732971 | 67733166 | 67732971 | ID=cds.MS.gene82026.t1;Parent=MS.gene82026.t1 |
| chr8.3 | exon | 67730790 | 67730876 | 67730790 | ID=MS.gene82026.t1.exon3;Parent=MS.gene82026.t1 |
| chr8.3 | CDS | 67730790 | 67730876 | 67730790 | ID=cds.MS.gene82026.t1;Parent=MS.gene82026.t1 |
| chr8.3 | exon | 67729910 | 67730302 | 67729910 | ID=MS.gene82026.t1.exon4;Parent=MS.gene82026.t1 |
| chr8.3 | CDS | 67729910 | 67730302 | 67729910 | ID=cds.MS.gene82026.t1;Parent=MS.gene82026.t1 |
| Gene Sequence |
| Protein sequence |
