Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82030.t1 | XP_013444574.1 | 88.9 | 253 | 28 | 0 | 1 | 253 | 202 | 454 | 4.00E-111 | 411 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82030.t1 | Q39204 | 46.9 | 226 | 101 | 6 | 33 | 253 | 411 | 622 | 4.6e-39 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82030.t1 | A0A072TM63 | 88.9 | 253 | 28 | 0 | 1 | 253 | 202 | 454 | 2.9e-111 | 411.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82030.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82030.t1 | MTR_8g024770 | 94.466 | 253 | 14 | 0 | 1 | 253 | 202 | 454 | 1.68e-175 | 491 |
| MS.gene82030.t1 | MTR_8g024790 | 78.682 | 258 | 44 | 6 | 1 | 253 | 211 | 462 | 1.42e-134 | 387 |
| MS.gene82030.t1 | MTR_5g030430 | 51.485 | 202 | 89 | 4 | 59 | 253 | 474 | 673 | 5.44e-56 | 190 |
| MS.gene82030.t1 | MTR_8g067280 | 48.187 | 193 | 92 | 3 | 60 | 245 | 444 | 635 | 1.40e-51 | 177 |
| MS.gene82030.t1 | MTR_7g096350 | 40.000 | 200 | 76 | 5 | 27 | 225 | 319 | 475 | 6.11e-31 | 120 |
| MS.gene82030.t1 | MTR_8g027495 | 38.596 | 171 | 91 | 5 | 76 | 245 | 456 | 613 | 5.95e-26 | 106 |
| MS.gene82030.t1 | MTR_7g117670 | 35.465 | 172 | 95 | 3 | 76 | 245 | 400 | 557 | 4.32e-23 | 98.2 |
| MS.gene82030.t1 | MTR_3g104100 | 32.927 | 164 | 102 | 3 | 66 | 222 | 183 | 345 | 5.29e-18 | 82.8 |
| MS.gene82030.t1 | MTR_1g072320 | 31.579 | 209 | 115 | 6 | 43 | 234 | 432 | 629 | 6.12e-17 | 80.1 |
| MS.gene82030.t1 | MTR_4g009110 | 25.989 | 177 | 120 | 3 | 64 | 237 | 164 | 332 | 1.15e-16 | 78.6 |
| MS.gene82030.t1 | MTR_2g081040 | 33.548 | 155 | 95 | 3 | 75 | 222 | 174 | 327 | 6.84e-16 | 76.6 |
| MS.gene82030.t1 | MTR_4g009540 | 28.177 | 181 | 108 | 5 | 64 | 234 | 142 | 310 | 1.08e-15 | 75.5 |
| MS.gene82030.t1 | MTR_0250s0040 | 29.730 | 148 | 80 | 4 | 49 | 191 | 69 | 197 | 2.40e-15 | 73.9 |
| MS.gene82030.t1 | MTR_4g009540 | 28.177 | 181 | 108 | 5 | 64 | 234 | 142 | 310 | 2.50e-15 | 74.7 |
| MS.gene82030.t1 | MTR_3g030700 | 35.795 | 176 | 98 | 5 | 55 | 222 | 173 | 341 | 5.88e-15 | 73.9 |
| MS.gene82030.t1 | MTR_4g097940 | 29.193 | 161 | 99 | 4 | 64 | 218 | 138 | 289 | 1.88e-14 | 72.0 |
| MS.gene82030.t1 | MTR_7g083900 | 60.000 | 55 | 22 | 0 | 76 | 130 | 284 | 338 | 7.27e-14 | 70.9 |
| MS.gene82030.t1 | MTR_7g083900 | 60.000 | 55 | 22 | 0 | 76 | 130 | 284 | 338 | 7.42e-14 | 70.9 |
| MS.gene82030.t1 | MTR_3g498695 | 58.182 | 55 | 23 | 0 | 76 | 130 | 296 | 350 | 1.14e-13 | 70.5 |
| MS.gene82030.t1 | MTR_3g498695 | 58.182 | 55 | 23 | 0 | 76 | 130 | 296 | 350 | 1.15e-13 | 70.5 |
| MS.gene82030.t1 | MTR_5g014640 | 31.944 | 144 | 83 | 3 | 79 | 218 | 155 | 287 | 2.17e-13 | 68.9 |
| MS.gene82030.t1 | MTR_2g022280 | 26.786 | 168 | 106 | 5 | 77 | 231 | 1 | 164 | 3.61e-13 | 66.6 |
| MS.gene82030.t1 | MTR_4g097950 | 32.624 | 141 | 82 | 4 | 53 | 190 | 55 | 185 | 7.47e-13 | 66.6 |
| MS.gene82030.t1 | MTR_4g066460 | 30.263 | 152 | 72 | 5 | 45 | 191 | 139 | 261 | 1.16e-12 | 67.0 |
| MS.gene82030.t1 | MTR_4g067010 | 28.788 | 132 | 74 | 4 | 65 | 191 | 137 | 253 | 1.19e-12 | 67.0 |
| MS.gene82030.t1 | MTR_6g047570 | 30.159 | 126 | 74 | 3 | 71 | 191 | 152 | 268 | 1.99e-12 | 66.2 |
| MS.gene82030.t1 | MTR_8g098275 | 56.364 | 55 | 24 | 0 | 77 | 131 | 307 | 361 | 5.02e-12 | 65.5 |
| MS.gene82030.t1 | MTR_8g098275 | 56.364 | 55 | 24 | 0 | 77 | 131 | 243 | 297 | 5.07e-12 | 65.5 |
| MS.gene82030.t1 | MTR_8g098275 | 56.364 | 55 | 24 | 0 | 77 | 131 | 400 | 454 | 5.14e-12 | 65.9 |
| MS.gene82030.t1 | MTR_4g092700 | 38.372 | 86 | 48 | 2 | 46 | 131 | 131 | 211 | 7.01e-12 | 64.7 |
| MS.gene82030.t1 | MTR_2g084280 | 29.801 | 151 | 90 | 6 | 82 | 227 | 137 | 276 | 9.00e-12 | 64.3 |
| MS.gene82030.t1 | MTR_2g038040 | 50.000 | 62 | 24 | 1 | 79 | 133 | 53 | 114 | 9.45e-12 | 63.5 |
| MS.gene82030.t1 | MTR_2g104490 | 26.630 | 184 | 114 | 8 | 61 | 232 | 116 | 290 | 1.12e-11 | 63.9 |
| MS.gene82030.t1 | MTR_4g097920 | 29.167 | 168 | 98 | 7 | 57 | 220 | 121 | 271 | 1.79e-11 | 63.5 |
| MS.gene82030.t1 | MTR_7g110810 | 31.624 | 117 | 69 | 2 | 28 | 134 | 153 | 268 | 2.00e-11 | 63.5 |
| MS.gene82030.t1 | MTR_4g097920 | 29.167 | 168 | 98 | 7 | 57 | 220 | 136 | 286 | 2.02e-11 | 63.2 |
| MS.gene82030.t1 | MTR_0246s0020 | 28.814 | 118 | 75 | 2 | 78 | 190 | 198 | 311 | 2.05e-11 | 63.5 |
| MS.gene82030.t1 | MTR_0246s0020 | 28.814 | 118 | 75 | 2 | 78 | 190 | 198 | 311 | 2.22e-11 | 63.5 |
| MS.gene82030.t1 | MTR_2g104490 | 26.667 | 180 | 111 | 8 | 61 | 228 | 116 | 286 | 2.22e-11 | 63.2 |
| MS.gene82030.t1 | MTR_0011s0260 | 27.778 | 144 | 94 | 3 | 78 | 218 | 183 | 319 | 2.24e-11 | 63.5 |
| MS.gene82030.t1 | MTR_2g104550 | 20.707 | 198 | 146 | 5 | 48 | 239 | 104 | 296 | 2.43e-11 | 63.2 |
| MS.gene82030.t1 | MTR_0011s0210 | 31.624 | 117 | 70 | 3 | 78 | 191 | 183 | 292 | 2.54e-11 | 63.2 |
| MS.gene82030.t1 | MTR_2g010450 | 25.904 | 166 | 102 | 3 | 78 | 234 | 177 | 330 | 3.19e-11 | 62.8 |
| MS.gene82030.t1 | MTR_4g094762 | 30.769 | 156 | 94 | 6 | 79 | 224 | 293 | 444 | 3.34e-11 | 63.2 |
| MS.gene82030.t1 | MTR_1g112680 | 50.000 | 50 | 25 | 0 | 82 | 131 | 321 | 370 | 3.79e-11 | 63.2 |
| MS.gene82030.t1 | MTR_4g057270 | 52.000 | 50 | 24 | 0 | 82 | 131 | 153 | 202 | 5.45e-11 | 62.0 |
| MS.gene82030.t1 | MTR_4g066380 | 40.476 | 84 | 33 | 2 | 45 | 128 | 137 | 203 | 9.22e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82030.t1 | AT1G32640 | 51.485 | 202 | 80 | 6 | 58 | 253 | 433 | 622 | 5.67e-55 | 186 |
| MS.gene82030.t1 | AT4G17880 | 48.691 | 191 | 83 | 5 | 59 | 244 | 397 | 577 | 1.97e-52 | 179 |
| MS.gene82030.t1 | AT5G46760 | 47.980 | 198 | 95 | 5 | 59 | 253 | 396 | 588 | 1.07e-51 | 177 |
| MS.gene82030.t1 | AT5G46830 | 49.412 | 170 | 77 | 4 | 76 | 244 | 341 | 502 | 1.30e-39 | 144 |
| MS.gene82030.t1 | AT4G00870 | 49.123 | 171 | 79 | 3 | 77 | 244 | 248 | 413 | 1.18e-38 | 139 |
| MS.gene82030.t1 | AT2G46510 | 37.089 | 213 | 97 | 6 | 28 | 231 | 342 | 526 | 1.63e-31 | 122 |
| MS.gene82030.t1 | AT1G01260 | 38.372 | 172 | 79 | 4 | 62 | 233 | 417 | 561 | 1.77e-28 | 113 |
| MS.gene82030.t1 | AT1G01260 | 38.372 | 172 | 79 | 4 | 62 | 233 | 417 | 561 | 1.77e-28 | 113 |
| MS.gene82030.t1 | AT1G01260 | 38.372 | 172 | 79 | 4 | 62 | 233 | 417 | 561 | 1.77e-28 | 113 |
| MS.gene82030.t1 | AT4G16430 | 36.095 | 169 | 81 | 2 | 58 | 226 | 300 | 441 | 1.66e-27 | 110 |
| MS.gene82030.t1 | AT4G37850 | 29.954 | 217 | 120 | 7 | 24 | 218 | 84 | 290 | 1.92e-16 | 77.8 |
| MS.gene82030.t1 | AT4G37850 | 29.954 | 217 | 120 | 7 | 24 | 218 | 84 | 290 | 1.92e-16 | 77.8 |
| MS.gene82030.t1 | AT3G26744 | 60.000 | 55 | 22 | 0 | 76 | 130 | 305 | 359 | 1.52e-14 | 73.2 |
| MS.gene82030.t1 | AT3G26744 | 60.000 | 55 | 22 | 0 | 76 | 130 | 305 | 359 | 1.52e-14 | 73.2 |
| MS.gene82030.t1 | AT3G26744 | 60.000 | 55 | 22 | 0 | 76 | 130 | 305 | 359 | 1.52e-14 | 73.2 |
| MS.gene82030.t1 | AT3G26744 | 60.000 | 55 | 22 | 0 | 76 | 130 | 305 | 359 | 1.57e-14 | 73.2 |
| MS.gene82030.t1 | AT1G12860 | 60.000 | 55 | 22 | 0 | 76 | 130 | 265 | 319 | 2.15e-14 | 72.4 |
| MS.gene82030.t1 | AT1G12860 | 60.000 | 55 | 22 | 0 | 76 | 130 | 265 | 319 | 2.49e-14 | 72.4 |
| MS.gene82030.t1 | AT5G57150 | 27.523 | 218 | 112 | 8 | 29 | 226 | 16 | 207 | 2.75e-13 | 67.4 |
| MS.gene82030.t1 | AT5G57150 | 27.523 | 218 | 112 | 8 | 29 | 226 | 16 | 207 | 3.67e-13 | 67.8 |
| MS.gene82030.t1 | AT5G57150 | 28.272 | 191 | 96 | 7 | 56 | 226 | 39 | 208 | 4.74e-13 | 67.0 |
| MS.gene82030.t1 | AT5G57150 | 28.272 | 191 | 96 | 7 | 56 | 226 | 39 | 208 | 5.23e-13 | 67.0 |
| MS.gene82030.t1 | AT1G63650 | 26.061 | 165 | 106 | 4 | 78 | 227 | 405 | 568 | 5.52e-13 | 68.6 |
| MS.gene82030.t1 | AT1G63650 | 26.061 | 165 | 106 | 4 | 78 | 227 | 405 | 568 | 5.52e-13 | 68.6 |
| MS.gene82030.t1 | AT1G63650 | 26.061 | 165 | 106 | 4 | 78 | 227 | 405 | 568 | 5.52e-13 | 68.6 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 6.75e-13 | 66.6 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 7.45e-13 | 66.6 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 7.52e-13 | 66.2 |
| MS.gene82030.t1 | AT4G09820 | 50.909 | 55 | 27 | 0 | 77 | 131 | 362 | 416 | 1.15e-12 | 67.8 |
| MS.gene82030.t1 | AT5G57150 | 27.979 | 193 | 98 | 7 | 54 | 226 | 37 | 208 | 1.16e-12 | 66.2 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 1.46e-12 | 66.2 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 1.46e-12 | 66.2 |
| MS.gene82030.t1 | AT4G29930 | 62.222 | 45 | 17 | 0 | 79 | 123 | 55 | 99 | 1.48e-12 | 65.9 |
| MS.gene82030.t1 | AT4G29930 | 63.636 | 44 | 16 | 0 | 80 | 123 | 56 | 99 | 2.07e-12 | 64.3 |
| MS.gene82030.t1 | AT2G16910 | 29.843 | 191 | 107 | 7 | 82 | 250 | 318 | 503 | 3.54e-12 | 66.2 |
| MS.gene82030.t1 | AT2G22750 | 36.842 | 133 | 75 | 4 | 65 | 190 | 137 | 267 | 2.69e-11 | 63.2 |
| MS.gene82030.t1 | AT2G22750 | 36.842 | 133 | 75 | 4 | 65 | 190 | 137 | 267 | 2.75e-11 | 63.2 |
| MS.gene82030.t1 | AT2G22750 | 36.842 | 133 | 75 | 4 | 65 | 190 | 109 | 239 | 2.95e-11 | 62.8 |
| MS.gene82030.t1 | AT2G22750 | 36.842 | 133 | 75 | 4 | 65 | 190 | 133 | 263 | 2.96e-11 | 62.8 |
| MS.gene82030.t1 | AT2G22750 | 36.842 | 133 | 75 | 4 | 65 | 190 | 109 | 239 | 2.99e-11 | 62.8 |
| MS.gene82030.t1 | AT5G41315 | 25.140 | 179 | 112 | 6 | 69 | 227 | 441 | 617 | 3.39e-11 | 63.2 |
| MS.gene82030.t1 | AT5G41315 | 25.140 | 179 | 112 | 6 | 69 | 227 | 438 | 614 | 3.61e-11 | 63.2 |
| MS.gene82030.t1 | AT5G41315 | 25.140 | 179 | 112 | 6 | 69 | 227 | 433 | 609 | 4.33e-11 | 63.2 |
| MS.gene82030.t1 | AT4G38070 | 31.579 | 114 | 73 | 2 | 19 | 130 | 37 | 147 | 5.24e-11 | 61.6 |
| MS.gene82030.t1 | AT3G24140 | 24.537 | 216 | 138 | 5 | 58 | 249 | 175 | 389 | 6.05e-11 | 62.4 |
| MS.gene82030.t1 | AT3G24140 | 24.537 | 216 | 138 | 5 | 58 | 249 | 175 | 389 | 6.09e-11 | 62.4 |
| MS.gene82030.t1 | AT1G10610 | 50.000 | 54 | 24 | 1 | 79 | 129 | 168 | 221 | 7.00e-11 | 62.0 |
| MS.gene82030.t1 | AT2G28160 | 36.735 | 98 | 50 | 2 | 34 | 131 | 99 | 184 | 7.62e-11 | 61.6 |
| MS.gene82030.t1 | AT1G10610 | 46.269 | 67 | 32 | 2 | 79 | 141 | 235 | 301 | 7.88e-11 | 62.0 |
| MS.gene82030.t1 | AT1G10610 | 46.269 | 67 | 32 | 2 | 79 | 141 | 265 | 331 | 8.72e-11 | 62.0 |
| MS.gene82030.t1 | AT2G28160 | 36.735 | 98 | 50 | 2 | 34 | 131 | 99 | 184 | 9.35e-11 | 61.2 |
Find 32 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTGAAGATTTAAAATT+AGG | 0.097958 | 8.4:-70295008 | MS.gene82030:CDS |
| CTTGAAAGATTTGGAGTTTC+AGG | 0.118528 | 8.4:-70294769 | MS.gene82030:CDS |
| CTTCTCATGGGTGGCTTCTT+TGG | 0.173047 | 8.4:+70295358 | None:intergenic |
| GAGATTGATGTGAAGATTAT+AGG | 0.182361 | 8.4:-70294858 | MS.gene82030:CDS |
| TGAGAATTGCAGACCTAATT+AGG | 0.229660 | 8.4:+70294655 | None:intergenic |
| TACTACAACTAGGTTTGTTT+TGG | 0.270219 | 8.4:+70294898 | None:intergenic |
| TCTTCATTTCTCATCTCATT+AGG | 0.290165 | 8.4:+70294681 | None:intergenic |
| GACCGTTAATAAAGTTATAA+TGG | 0.291909 | 8.4:-70294727 | MS.gene82030:CDS |
| ATCTTAAAGCATAGAATCTA+TGG | 0.304209 | 8.4:+70295111 | None:intergenic |
| AGATTGAAGATTTAAAATTA+GGG | 0.310294 | 8.4:-70295007 | MS.gene82030:CDS |
| AACCATTATAACTTTATTAA+CGG | 0.312837 | 8.4:+70294725 | None:intergenic |
| TTATCCATCTTTGAAACGTT+TGG | 0.324231 | 8.4:+70295080 | None:intergenic |
| GCCAACATGGGTGTCGTCTC+TGG | 0.337682 | 8.4:-70295389 | None:intergenic |
| AATGAGTGTCTTGAAAGATT+TGG | 0.347886 | 8.4:-70294778 | MS.gene82030:CDS |
| TTTATCTCTCCTTTGTCTCT+CGG | 0.386285 | 8.4:+70295139 | None:intergenic |
| ATGGGTGGCTTCTTTGGCGC+TGG | 0.396457 | 8.4:+70295364 | None:intergenic |
| GGTTCCAAACGTTTCAAAGA+TGG | 0.424360 | 8.4:-70295084 | MS.gene82030:CDS |
| GAAATGAAGAGAGCCTAATT+AGG | 0.443372 | 8.4:-70294668 | MS.gene82030:CDS |
| TTTAAAATTAGGGCAACAAA+AGG | 0.456499 | 8.4:-70294997 | MS.gene82030:CDS |
| AAAAGAGAACCGAAGAAAAG+AGG | 0.478932 | 8.4:-70295209 | MS.gene82030:CDS |
| TCGGCTTCCACATGGTTCAT+CGG | 0.486588 | 8.4:+70295158 | None:intergenic |
| GGTGTTTGAGTTCGTGTCAA+CGG | 0.501817 | 8.4:+70295179 | None:intergenic |
| ATTCTATGCTTTAAGATCTG+TGG | 0.527981 | 8.4:-70295105 | MS.gene82030:CDS |
| ACACTCATTAATCGTGCACT+AGG | 0.531276 | 8.4:+70294792 | None:intergenic |
| TTCTTTGTTATCAGATGCAG+TGG | 0.539939 | 8.4:-70295054 | MS.gene82030:CDS |
| TTTGTCTCTCGGCTTCCACA+TGG | 0.548386 | 8.4:+70295150 | None:intergenic |
| ATGTGGAAGCCGAGAGACAA+AGG | 0.579932 | 8.4:-70295148 | MS.gene82030:CDS |
| ATAAGATTCTTACTACAACT+AGG | 0.600771 | 8.4:+70294888 | None:intergenic |
| GATTATAGGACATGATGCTA+TGG | 0.615350 | 8.4:-70294844 | MS.gene82030:CDS |
| CACTCATTAATCGTGCACTA+GGG | 0.626623 | 8.4:+70294793 | None:intergenic |
| TGCAACGACAACTTCAATCG+TGG | 0.678130 | 8.4:-70294925 | MS.gene82030:CDS |
| TCAAACACCGATGAACCATG+TGG | 0.723026 | 8.4:-70295165 | MS.gene82030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCATTATAACTTTATTAA+CGG | + | chr8.4:70295305-70295324 | None:intergenic | 15.0% |
| !!! | AAGATTGAAGATTTAAAATT+AGG | - | chr8.4:70295019-70295038 | MS.gene82030:CDS | 15.0% |
| !!! | AGATTGAAGATTTAAAATTA+GGG | - | chr8.4:70295020-70295039 | MS.gene82030:CDS | 15.0% |
| ! | ATAAGATTCTTACTACAACT+AGG | + | chr8.4:70295142-70295161 | None:intergenic | 25.0% |
| ! | ATCTTAAAGCATAGAATCTA+TGG | + | chr8.4:70294919-70294938 | None:intergenic | 25.0% |
| ! | GACCGTTAATAAAGTTATAA+TGG | - | chr8.4:70295300-70295319 | MS.gene82030:CDS | 25.0% |
| !! | TTTAAAATTAGGGCAACAAA+AGG | - | chr8.4:70295030-70295049 | MS.gene82030:CDS | 25.0% |
| !!! | CAATTTTTTTTGCTTCTCAT+GGG | + | chr8.4:70294684-70294703 | None:intergenic | 25.0% |
| AATGAGTGTCTTGAAAGATT+TGG | - | chr8.4:70295249-70295268 | MS.gene82030:CDS | 30.0% | |
| GAGATTGATGTGAAGATTAT+AGG | - | chr8.4:70295169-70295188 | MS.gene82030:CDS | 30.0% | |
| TCTTCATTTCTCATCTCATT+AGG | + | chr8.4:70295349-70295368 | None:intergenic | 30.0% | |
| !! | ATTCTATGCTTTAAGATCTG+TGG | - | chr8.4:70294922-70294941 | MS.gene82030:CDS | 30.0% |
| !! | TACTACAACTAGGTTTGTTT+TGG | + | chr8.4:70295132-70295151 | None:intergenic | 30.0% |
| !! | TTATCCATCTTTGAAACGTT+TGG | + | chr8.4:70294950-70294969 | None:intergenic | 30.0% |
| !!! | GCAATTTTTTTTGCTTCTCA+TGG | + | chr8.4:70294685-70294704 | None:intergenic | 30.0% |
| !!! | GTTGTTTTTGTTGCTAATAG+TGG | + | chr8.4:70294773-70294792 | None:intergenic | 30.0% |
| AAAAGAGAACCGAAGAAAAG+AGG | - | chr8.4:70294818-70294837 | MS.gene82030:CDS | 35.0% | |
| GAAATGAAGAGAGCCTAATT+AGG | - | chr8.4:70295359-70295378 | MS.gene82030:CDS | 35.0% | |
| GATTATAGGACATGATGCTA+TGG | - | chr8.4:70295183-70295202 | MS.gene82030:CDS | 35.0% | |
| TGAGAATTGCAGACCTAATT+AGG | + | chr8.4:70295375-70295394 | None:intergenic | 35.0% | |
| TTTATCTCTCCTTTGTCTCT+CGG | + | chr8.4:70294891-70294910 | None:intergenic | 35.0% | |
| ! | CTTGAAAGATTTGGAGTTTC+AGG | - | chr8.4:70295258-70295277 | MS.gene82030:CDS | 35.0% |
| ! | GGTTTTCTTCCTCTTTTCTT+CGG | + | chr8.4:70294830-70294849 | None:intergenic | 35.0% |
| ! | TTCTTTGTTATCAGATGCAG+TGG | - | chr8.4:70294973-70294992 | MS.gene82030:CDS | 35.0% |
| !!! | TTTTTTTTGCTTCTCATGGG+TGG | + | chr8.4:70294681-70294700 | None:intergenic | 35.0% |
| ACACTCATTAATCGTGCACT+AGG | + | chr8.4:70295238-70295257 | None:intergenic | 40.0% | |
| CACTCATTAATCGTGCACTA+GGG | + | chr8.4:70295237-70295256 | None:intergenic | 40.0% | |
| GGTTCCAAACGTTTCAAAGA+TGG | - | chr8.4:70294943-70294962 | MS.gene82030:CDS | 40.0% | |
| TCAAACACCGATGAACCATG+TGG | - | chr8.4:70294862-70294881 | MS.gene82030:CDS | 45.0% | |
| TGCAACGACAACTTCAATCG+TGG | - | chr8.4:70295102-70295121 | MS.gene82030:CDS | 45.0% | |
| ! | GGTGTTTGAGTTCGTGTCAA+CGG | + | chr8.4:70294851-70294870 | None:intergenic | 45.0% |
| ATGTGGAAGCCGAGAGACAA+AGG | - | chr8.4:70294879-70294898 | MS.gene82030:CDS | 50.0% | |
| CTTCTCATGGGTGGCTTCTT+TGG | + | chr8.4:70294672-70294691 | None:intergenic | 50.0% | |
| TCGGCTTCCACATGGTTCAT+CGG | + | chr8.4:70294872-70294891 | None:intergenic | 50.0% | |
| TTTGTCTCTCGGCTTCCACA+TGG | + | chr8.4:70294880-70294899 | None:intergenic | 50.0% | |
| ATGGGTGGCTTCTTTGGCGC+TGG | + | chr8.4:70294666-70294685 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 70294644 | 70295405 | 70294644 | ID=MS.gene82030 |
| chr8.4 | mRNA | 70294644 | 70295405 | 70294644 | ID=MS.gene82030.t1;Parent=MS.gene82030 |
| chr8.4 | exon | 70294644 | 70295405 | 70294644 | ID=MS.gene82030.t1.exon1;Parent=MS.gene82030.t1 |
| chr8.4 | CDS | 70294644 | 70295405 | 70294644 | ID=cds.MS.gene82030.t1;Parent=MS.gene82030.t1 |
| Gene Sequence |
| Protein sequence |
